+F Repair protein KO
#
DNA Repair and Recombination Proteins - Bacillus cereus ATCC 14579
%
!
AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D BC2024 O6-methylguanine-DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D BC3137 Deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E BC5398 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E BC0885 DNA-3-methyladenine glycosylase II K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E BC0504 A/G-specific adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E BC1548 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D BC5157 Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BC0540 Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BC3058 Phosphohydrolase (MutT/nudix family protein) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BC3037 Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BC0623 Phosphohydrolase (MutT/nudix family protein) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BC1752 Phosphohydrolase (MutT/nudix family protein) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BC4785 Phosphohydrolase (MutT/nudix family protein) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D BC2024 O6-methylguanine-DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D BC3740 ADA regulatory protein K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-]
D BC3741 O6-methylguanine-DNA methyltransferase K13531 adaB; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D BC3137 Deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E BC5398 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E BC1529 DNA polymerase, bacteriophage-type K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E BC3742 DNA-3-methyladenine glycosylase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E BC0468 DNA-3-methyladenine glycosylase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E BC0885 DNA-3-methyladenine glycosylase II K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E BC0504 A/G-specific adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E BC4586 Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E BC1548 Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E BC3739 Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E BC4282 Endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D RecJ
E BC4403 Single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E BC0341 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E BC4587 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E BC5167 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
E BC5168 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
E BC4520 Excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
E BC0340 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E BC1041 ATP-dependent DNA helicase rep K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E BC1223 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E BC4587 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E BC0341 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F BC0122 DNA-directed RNA polymerase beta chain K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F BC0123 DNA-directed RNA polymerase beta' chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F BC0158 DNA-directed RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F BC5339 DNA-directed RNA polymerase delta chain K03048 rpoE; DNA-directed RNA polymerase subunit delta
F BC3868 DNA-directed RNA polymerase omega chain K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F BC0058 Transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E BC3769 DNA mismatch repair protein mutS K03555 mutS; DNA mismatch repair protein MutS
E BC3480 DNA mismatch repair protein mutS K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
E BC3768 DNA mismatch repair protein mutL K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E BC4179 Exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E BC4178 Exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E BC4605 DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E BC3816 DNA polymerase III alpha subunit K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
E BC0002 DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E BC2693 DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E BC4321 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E BC0037 DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E BC3611 DNA polymerase III alpha subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E BC0024 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E BC0341 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E BC0340 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E BC1041 ATP-dependent DNA helicase rep K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E BC1223 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E BC2154 Single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein
E BC5475 Single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E BC4389 Exodeoxyribonuclease V alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E BC3779 RecA protein K03553 recA; recombination protein RecA
E BC4415 Holliday junction DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA
E BC4414 Holliday junction DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E BC3866 Primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E BC1852 Exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50
E BC2296 Exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50
E BC1857 Exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11
E BC2295 Exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E BC3779 RecA protein K03553 recA; recombination protein RecA
E BC0103 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
E BC0004 DNA replication and repair protein recF K03629 recF; DNA replication and repair protein RecF
E BC3853 ATP-dependent DNA helicase recG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E BC4403 Single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E BC4295 DNA repair protein recO K03584 recO; DNA repair protein RecO (recombination protein O)
E BC0026 Recombination protein recR K06187 recR; recombination protein RecR
E BC1554 Recombination protein recU K03700 recU; recombination protein U
E BC4415 Holliday junction DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA
E BC4414 Holliday junction DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D AddAB pathway proteins
E BC1138 ATP-dependent nuclease subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
E BC1137 ATP-dependent nuclease subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D Other HR factor
D Archaeal homologous recombinant proteins
E BC1852 Exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50
E BC2296 Exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50
E BC1857 Exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11
E BC2295 Exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
E BC0826 hypothetical DNA-binding protein K10979 ku; DNA end-binding protein Ku
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F BC0006 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F BC0005 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F BC3831 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F BC1510 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
F BC2313 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
F BC3728 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F BC4403 Single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F BC4295 DNA repair protein recO K03584 recO; DNA repair protein RecO (recombination protein O)
F BC0026 Recombination protein recR K06187 recR; recombination protein RecR
F BC0341 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
E Supressor
F BC2815 ATP-dependent DNA helicase recQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F BC1485 ATP-dependent DNA helicase recQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F BC5167 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
F BC5168 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D BC4142 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
C Other SOS response factors
D BC3779 RecA protein K03553 recA; recombination protein RecA
D BCp0006 LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D BC3690 LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D BC3704 LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D BC2154 Single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein
D BC5475 Single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein
D BC0498 Regulatory protein recX K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
D BC4553 DNA polymerase X family K02347 polX; DNA polymerase (family X)
C DNA helicases
D BC1565 ATP-dependent helicase, DinG family K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
C Modulation of nucleotide pools
D BC5157 Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BC0540 Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BC3058 Phosphohydrolase (MutT/nudix family protein) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BC3037 Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BC0623 Phosphohydrolase (MutT/nudix family protein) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BC1752 Phosphohydrolase (MutT/nudix family protein) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BC4785 Phosphohydrolase (MutT/nudix family protein) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BC1354 Ribonucleoside-diphosphate reductase alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D BC1355 Ribonucleoside-diphosphate reductase beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
D BC4608 phosphoesterase, DHH family protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024