+F Repair protein KO #

  DNA Repair and Recombination Proteins - Bradyrhizobium diazoefficiens USDA 110

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D bll7808 bll7808; methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D bll1113 bll1113; methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D blr0915 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D blr5310 blr5310; DNA photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E bll4476 bll4476; DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E blr2499 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E blr0689 blr0689; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D blr0207 blr0207; NTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D bll6630 bll6630; ORF_ID:bll6630; hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D bll2562 nudD; GDP-mannose mannosyl hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D bll0758 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D bll7808 bll7808; methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D bll1113 bll1113; methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D blr0915 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D bll0687 bll0687; transcriptional regulatory protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D bll8171 bll8171; transcriptional regulatory protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D blr5310 blr5310; DNA photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D blr2963 alkB; alkylated DNA repair protein K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E blr6661 blr6661; ORF_ID:blr6661; putative glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] E bll3023 bll3023; ORF_ID:bll3023; hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E blr5068 blr5068; ORF_ID:blr5068; hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E bll2523 bll2523; ORF_ID:bll2523; hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E bll1371 alkA; DNA-3-methyladenine glycosidase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E bll4476 bll4476; DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E blr2499 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E bll2553 tag; 3-methyladenine-DNA glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E blr0762 blr0762; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E blr0689 blr0689; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E blr0618 blr0618; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E blr4761 blr4761; exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E bll4069 bll4069; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E blr3667 blr3667; ORF_ID:blr3667; hypothetical protein K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E blr4377 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E bll6591 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E blr8131 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E blr4702 uvrA; ABC excinuclease subunit A K03701 uvrA; excinuclease ABC subunit A E blr8051 uvrA; ORF_ID:blr8051; putative excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E blr7431 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E blr7470 uvrC; excinuclease ABC chain C K03703 uvrC; excinuclease ABC subunit C E blr6561 blr6561; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E blr5493 uvrD; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E blr8131 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E bll6591 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F bll5410 rpoB; DNA-directed RNA polymerase beta chain K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F bll5409 rpoC; DNA-directed RNA polymerase beta' chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F bll5376 rpoA; DNA-directed RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F bll5066 rnpO; RNA polymerase omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F bll4601 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] F bll4667 bll4667; ORF_ID:bll4667; probable transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E bll0924 mutS; DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E blr7493 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E bll0068 bll0068; exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E blr7507 blr7507; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E bsl2652 bsl2652; exodeoxyribonuclease small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E bll4866 dnaE; DNA polymerase III alpha chain K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E bll0829 dnaN; DNA polymerase III beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E blr4109 blr4109; ORF_ID:blr4109; hypothetical protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E blr0629 blr0629; ORF_ID:blr0629; hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E bll4517 bll4517; ORF_ID:bll4517; probable DNA polymerase III delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E blr0640 dnaQ; DNA polymerase III epsilon chain K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E blr4117 blr4117; ORF_ID:blr4117; putative nuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E blr8018 blr8018; ORF_ID:blr8018; hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E bll8083 bll8083; ORF_ID:bll8083; hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E bll8116 bll8116; DNA polymerase III tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E bll6591 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E blr6561 blr6561; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E blr5493 uvrD; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E bll4698 ssb; single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E bll4266 bll4266; ORF_ID:bll4266; unknown protein K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E bll5755 recA; RecA protein K03553 recA; recombination protein RecA E blr1536 ruvA; holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA E blr1537 ruvB; holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E blr1535 ruvC; ORF_ID:blr1535; probable holliday junction nuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E bll0445 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E bll0068 bll0068; exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E bll1921 bll1921; ORF_ID:bll1921; exonuclease subunit SbcD homolog K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E bll5755 recA; RecA protein K03553 recA; recombination protein RecA E bll4062 radA; DNA repair protein K04485 radA; DNA repair protein RadA/Sms E bll0827 recF; DNA replication and repair protein K03629 recF; DNA replication and repair protein RecF E blr4603 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E blr4377 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E bll5058 bll5058; recO-like protein K03584 recO; DNA repair protein RecO (recombination protein O) E bll8114 recR; recombination protein K06187 recR; recombination protein RecR E bll6593 recN; DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) E blr1536 ruvA; holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA E blr1537 ruvB; holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E blr1535 ruvC; ORF_ID:blr1535; probable holliday junction nuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E bll0752 bll0752; ORF_ID:bll0752; putative helicase 2 K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E bll0753 bll0753; ORF_ID:bll0753; hypothetical protein K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E bll1921 bll1921; ORF_ID:bll1921; exonuclease subunit SbcD homolog K03547 sbcD; DNA repair protein SbcD/Mre11 E blr3062 blr3062; ORF_ID:blr3062; hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E blr6774 blr6774; ORF_ID:blr6774; hypothetical protein K10979 ku; DNA end-binding protein Ku E bll8014 bll8014; ORF_ID:bll8014; hypothetical protein K10979 ku; DNA end-binding protein Ku E blr1588 blr1588; conserved hypothetical protein K10979 ku; DNA end-binding protein Ku E bll3120 bll3120; ORF_ID:bll3120; putative ATP-dependent DNA ligase protein K10979 ku; DNA end-binding protein Ku E bll6773 bll6773; ORF_ID:bll6773; probable DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E blr8022 blr8022; ORF_ID:blr8022; similar to DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F bll4696 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F bll0823 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F blr5111 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F bll0572 bll0572; ORF_ID:bll0572; putative DNA topoisomerase I (EC 5.99.1.2) K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F bsr4925 hup; ORF_ID:bsr4925; probable DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta F bsl8312 hupT; HNS-type DNA binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F blr4377 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F bll5058 bll5058; recO-like protein K03584 recO; DNA repair protein RecO (recombination protein O) F bll8114 recR; recombination protein K06187 recR; recombination protein RecR F bll6591 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F bll5019 ihfA; integration host factor alpha subunit K04764 ihfA; integration host factor subunit alpha F blr0742 ihfB; integration host factor beta subunit K05788 ihfB; integration host factor subunit beta E Supressor F bll0068 bll0068; exonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F bll0242 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F blr4702 uvrA; ABC excinuclease subunit A K03701 uvrA; excinuclease ABC subunit A F blr8051 uvrA; ORF_ID:blr8051; putative excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F blr7431 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D bll0861 dinP; DNA-damage-inducible protein K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D blr5126 blr5126; DNA-damage inducible protein P K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D bll5755 recA; RecA protein K03553 recA; recombination protein RecA D blr4826 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D blr6135 blr6135; ORF_ID:blr6135; unknown protein K01356 lexA; repressor LexA [EC:3.4.21.88] D bll6593 recN; DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) D blr3024 blr3024; ORF_ID:blr3024; hypothetical protein K14160 imuA; protein ImuA D blr3025 blr3025; ORF_ID:blr3025; hypothetical protein K14161 imuB; protein ImuB D blr3026 dnaE; DNA polymerase III alpha chain K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D bll4698 ssb; single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein B Other factors with a suspected DNA repair function C DNA polymerase D blr8027 blr8027; ORF_ID:blr8027; putative DNA polymerase beta family K02347 polX; DNA polymerase (family X) C DNA helicases D blr1148 lhr; large ATP-dependent helicase-related protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D blr0207 blr0207; NTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D bll6630 bll6630; ORF_ID:bll6630; hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D bll2562 nudD; GDP-mannose mannosyl hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D bll0758 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D bll0007 bll0007; ORF_ID:bll0007; probable ribonucleoside-diphosphate reductase (EC 1.17.4.1) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D bll4274 nrdE; ribonucleoside-diphosphate reductase 2 alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D bll0006 nrdB; ribonucleoside-diphosphate reductase beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024