+F Repair protein KO #

  DNA Repair and Recombination Proteins - Bradyrhizobium sp. ORS 278

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D BRADO6764 ogt2; O-6-methylguanine-DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D BRADO6430 ogt; Putative methylated-DNA-protein-cystein methyltransferase (6-O-methylguanine-DNA methyltransferase) K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D BRADO0442 putative Deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D BRADO3224 Deoxyribodipyrimidine photo-lyase (DNA photolyase) (Photoreactivating enzyme) K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E BRADO3880 putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E BRADO2005 mutY; adenine glycosylase mutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E BRADO0152 nth; endonuclease III DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D BRADO0585 Putative mutator protein mutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BRADO2283 conserved hypothetical protein; putative NUDIX domain K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BRADO5692 putative NUDIX hydrolase (modular protein) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BRADO3690 conserved hypothetical protein; putative NUDIX hydrolase family protein. K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BRADO2052 putative Nudix hydrolase family protein; putative ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BRADO3028 conserved hypothetical protein; putative MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BRADO2098 Putative Nudix hydrolase family protein; putative ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BRADO0078 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) (dUTP pyrophosphatase) K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D BRADO6764 ogt2; O-6-methylguanine-DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D BRADO6430 ogt; Putative methylated-DNA-protein-cystein methyltransferase (6-O-methylguanine-DNA methyltransferase) K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D BRADO0154 putative methylated-DNA--protein-cysteine methyltransferase (O-6-methylguanine-DNA alkyltransferase); putative ADA regulatory protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D BRADO0442 putative Deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D BRADO3224 Deoxyribodipyrimidine photo-lyase (DNA photolyase) (Photoreactivating enzyme) K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D BRADO2608 conserved hypothetical protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] D BRADO2590 alkB; Alkylated DNA repair protein alkB K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E BRADO5719 putative G/U mismatch-specific DNA glycosylase (mug-like) K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] E BRADO2643 Putative Uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E BRADO4471 putative uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E BRADO2019 putative DNA polymerases K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E BRADO6499 putative DNA-3-methyladenine glycosidase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E BRADO3880 putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E BRADO2005 mutY; adenine glycosylase mutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E BRADO2046 tag; 3-methyl-adenine DNA glycosylase I, constitutive K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E BRADO0074 mutM; Bifunctional mutM protein:Formamidopyrimidine-DNA glycosylase (Fapy-DNA glycosylase); (DNA-(apurinic or apyrimidinic site) lyase mutM) (AP lyase mutM) K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E BRADO0152 nth; endonuclease III DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E BRADO4062 xthA2; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E BRADO0181 putative exodeoxyribonuclease III (xthA) K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E BRADO3288 exodeoxyribonuclease III (Exonuclease III) (EXO III) (AP endonuclease VI) K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E BRADO3577 putative single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E BRADO5649 ligA; DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E BRADO0752 polA; DNA polymerase I (POL I) K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E BRADO4010 uvrA; UvrABC system protein A (UvrA protein)(Excinuclease ABC subunit A)(Excinuclease ATPase subunit) K03701 uvrA; excinuclease ABC subunit A E BRADO5995 putative UvrABC system, protein B (UvrB, Excinuclease ABC subunit B) K03702 uvrB; excinuclease ABC subunit B E BRADO6055 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E BRADO0671 Putative ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BRADO5618 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BRADO0752 polA; DNA polymerase I (POL I) K02335 polA; DNA polymerase I [EC:2.7.7.7] E BRADO5649 ligA; DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F BRADO3054 rpoB; RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F BRADO3055 rpoC; RNA polymerase, beta prime subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F BRADO3090 rpoA; DNA-directed RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F BRADO4469 rpoZ; RNA polymerase omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F BRADO3771 Mfd; transcription repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] F BRADO2286 putative transcription repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E BRADO0537 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E BRADO6079 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E BRADO6092 putative exonuclease VII, large subunit OB-fold nucleic acid binding domain K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E BRADO2164 xseB; exodeoxyribonuclease small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E BRADO4145 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E BRADO0002 dnaN; DNA polymerase III, beta-subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E BRADO3329 putative DNA polymerase III, chi subunit, HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E BRADO0191 conserved hypothetical protein; putative DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E BRADO3828 putative DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E BRADO0202 dnaQ; DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E BRADO4398 hypothetical protein; putative DNA-directed DNA polymerase K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E BRADO0763 Putative DNA polymerase III (gamma and tau subunits) K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E BRADO5649 ligA; DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E BRADO0671 Putative ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BRADO5618 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BRADO4002 ssb; Single-stranded DNA-binding protein controls activity of RecBCD nuclease K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E BRADO4985 recA; Recombinase A (recA) K03553 recA; recombination protein RecA E BRADO1145 ruvA; Holliday junction DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA E BRADO1147 ruvB; Holliday junction DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E BRADO1144 ruvC; Crossover junction endodeoxyribonuclease ruvC (Holliday junction nuclease ruvC) K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E BRADO0413 priA; Primosomal protein N' (replication factor Y) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E BRADO4985 recA; Recombinase A (recA) K03553 recA; recombination protein RecA E BRADO3282 radA; DNA repair protein (DNA repair protein) K04485 radA; DNA repair protein RadA/Sms E BRADO0003 recF; DNA replication and repair protein recF K03629 recF; DNA replication and repair protein RecF E BRADO3769 recG; DNA helicase, ATP-dependent resolution of Holliday junctions, branch migration K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E BRADO3577 putative single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E BRADO4460 putative DNA repair protein RecO (Recombination protein O) K03584 recO; DNA repair protein RecO (recombination protein O) E BRADO0765 recR; Recombination protein recR K06187 recR; recombination protein RecR E BRADO5650 recN; DNA repair protein RecN (Recombination protein N) K03631 recN; DNA repair protein RecN (Recombination protein N) E BRADO1145 ruvA; Holliday junction DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA E BRADO1147 ruvB; Holliday junction DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E BRADO1144 ruvC; Crossover junction endodeoxyribonuclease ruvC (Holliday junction nuclease ruvC) K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E BRADO0084 putative helicase-exonuclease type V protein family, addA subunit K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E BRADO0083 putative helicase-exonuclease type V protein family, addB subunit K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E BRADO2688 Conserved hypothetical protein; Putative ATPase K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E BRADO2726 conserved hypothetical protein; putative Ku family protein K10979 ku; DNA end-binding protein Ku E BRADO5824 conserved hypothetical protein; putative Ku protein K10979 ku; DNA end-binding protein Ku E BRADO5823 putative ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F BRADO3999 gyrA; DNA gyrase, subunit A, type II topoisomerase K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F BRADO0004 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F BRADO4508 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F BRADO0345 conserved hypothetical protein; putative eukaryotic-like DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F BRADO3577 putative single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F BRADO4460 putative DNA repair protein RecO (Recombination protein O) K03584 recO; DNA repair protein RecO (recombination protein O) F BRADO0765 recR; Recombination protein recR K06187 recR; recombination protein RecR F BRADO5649 ligA; DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F BRADO4416 ihfA; integration host factor alpha-subunit (IHF-alpha) K04764 ihfA; integration host factor subunit alpha F BRADO0094 ihfB; Integration host factor beta-subunit (IHF-beta) K05788 ihfB; integration host factor subunit beta E Supressor F BRADO1125 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F BRADO4010 uvrA; UvrABC system protein A (UvrA protein)(Excinuclease ABC subunit A)(Excinuclease ATPase subunit) K03701 uvrA; excinuclease ABC subunit A F BRADO5995 putative UvrABC system, protein B (UvrB, Excinuclease ABC subunit B) K03702 uvrB; excinuclease ABC subunit B F BRADO4837 putative histone-like nucleoid-structuring protein H-NS family K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D BRADO4523 dinB; DNA polymerase IV, devoid of proofreading, damage-inducible protein P K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D BRADO1464 dinB; DNA polymerase IV, devoid of proofreading, damage-inducible protein P K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D BRADO4985 recA; Recombinase A (recA) K03553 recA; recombination protein RecA D BRADO5340 putative LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D BRADO4120 lexA; SOS response transcriptional repressor, lexA K01356 lexA; repressor LexA [EC:3.4.21.88] D BRADO5650 recN; DNA repair protein RecN (Recombination protein N) K03631 recN; DNA repair protein RecN (Recombination protein N) D BRADO2645 conserved hypothetical protein K14160 imuA; protein ImuA D BRADO2646 putative DNA-directed DNA polymerase K14161 imuB; protein ImuB D BRADO2647 dnaE2; Error-prone DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D BRADO4002 ssb; Single-stranded DNA-binding protein controls activity of RecBCD nuclease K03111 ssb; single-strand DNA-binding protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D BRADO6735 putative ATP dependent DNA helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D BRADO0585 Putative mutator protein mutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BRADO2283 conserved hypothetical protein; putative NUDIX domain K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BRADO5692 putative NUDIX hydrolase (modular protein) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BRADO3690 conserved hypothetical protein; putative NUDIX hydrolase family protein. K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BRADO2052 putative Nudix hydrolase family protein; putative ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BRADO3028 conserved hypothetical protein; putative MutT/nudix family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BRADO2098 Putative Nudix hydrolase family protein; putative ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BRADO0078 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) (dUTP pyrophosphatase) K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D BRADO3475 nrd; ribonucleotide reductase large subunit. K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024