+D GENES KO
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KEGG Orthology (KO) - Clostridium botulinum A2
%
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A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:cby00010]
D CLM_1845 putative glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D CLM_3712 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D CLM_3835 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D CLM_2979 glpX; fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D CLM_0607 fructose-1,6-bisphosphatase K04041 fbp3; fructose-1,6-bisphosphatase III [EC:3.1.3.11]
D CLM_0242 fba; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D CLM_0278 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D CLM_0276 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D CLM_1253 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00150 gap2; glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) [EC:1.2.1.59]
D CLM_0277 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D CLM_0279 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D CLM_0280 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D CLM_3834 pykA; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D CLM_3336 ppdK; pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D CLM_1874 acoC; TPP-dependent acetoin dehydrogenase complex, E2 component, dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D CLM_0819 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CLM_1875 acoL; TPP-dependent acetoin dehydrogenase complex, E3 component, dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CLM_3126 pyruvate ferredoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D CLM_1345 pyruvate ferredoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D CLM_3889 putative 2-oxoacid:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D CLM_3888 putative 2-oxoacid:acceptor oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D CLM_1754 ldh; L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D CLM_0413 adhE; aldehyde-alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D CLM_1257 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D CLM_3521 phosphoglucomutase/phosphomannomutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D CLM_4124 phosphoglucomutase/phosphomannomutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D CLM_1411 putative glyceraldehyde-3-phosphate dehydrogenase, NADP-dependent K00131 gapN; glyceraldehyde-3-phosphate dehydrogenase (NADP+) [EC:1.2.1.9]
D CLM_3808 glycosyl hydrolase, family 4 K01222 E3.2.1.86A; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D CLM_1021 glycosyl hydrolase, family 1 K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D CLM_1355 putative beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D CLM_0337 PTS system, glucose/glucoside family, IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D CLM_3201 ptbA; PTS system, glucose subfamily, IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D CLM_0348 PTS system, glucose family, IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D CLM_0330 PTS system, glucose family, EIIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D CLM_0327 PTS system, maltose/glucose-specfic, IIBC component K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]
D CLM_0346 PTS system, glucose/maltose-specfic, IIBC component K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]
D CLM_1502 ptsG; PTS system, glucose-specific, IIABC component K20118 ptsG; glucose PTS system EIICBA or EIICB component [EC:2.7.1.199]
D CLM_3120 PTS system, glucose family, IIABC component K20118 ptsG; glucose PTS system EIICBA or EIICB component [EC:2.7.1.199]
C 00020 Citrate cycle (TCA cycle) [PATH:cby00020]
D CLM_0496 HMGL-related enzyme K05942 E2.3.3.3; citrate (Re)-synthase [EC:2.3.3.3]
D CLM_0497 aconitase/isopropylmalate dehydratase family protein K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D CLM_0498 dehydrogenase, isocitrate/isopropylmalate family K00030 IDH3; isocitrate dehydrogenase (NAD+) [EC:1.1.1.41]
D CLM_0819 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CLM_1875 acoL; TPP-dependent acetoin dehydrogenase complex, E3 component, dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CLM_3889 putative 2-oxoacid:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D CLM_3888 putative 2-oxoacid:acceptor oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D CLM_3887 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3]
D CLM_3890 putative 2-oxoacid:acceptor oxidoreductase, delta subunit K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3]
D CLM_3909 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha region K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2]
D CLM_3908 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta region K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2]
D CLM_3746 pyc; pyruvate carboxylase K01958 PC; pyruvate carboxylase [EC:6.4.1.1]
D CLM_1874 acoC; TPP-dependent acetoin dehydrogenase complex, E2 component, dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D CLM_3126 pyruvate ferredoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D CLM_1345 pyruvate ferredoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
C 00030 Pentose phosphate pathway [PATH:cby00030]
D CLM_3712 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D CLM_2802 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D CLM_3856 transketolase, pyridine binding subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D CLM_3857 transketolase, thiamine diphosphate binding subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D CLM_1452 transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D CLM_2365 transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D CLM_0187 rpiB; ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D CLM_1804 deoC; deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D CLM_1805 rbsK; ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15]
D CLM_3521 phosphoglucomutase/phosphomannomutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D CLM_4124 phosphoglucomutase/phosphomannomutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D CLM_4036 prsA; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D CLM_0350 eda; 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D CLM_1411 putative glyceraldehyde-3-phosphate dehydrogenase, NADP-dependent K00131 gapN; glyceraldehyde-3-phosphate dehydrogenase (NADP+) [EC:1.2.1.9]
D CLM_0351 kinase, pfkB family K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]
D CLM_2153 aor; aldehyde ferredoxin oxidoreductase, tungsten-containing K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5]
D CLM_0242 fba; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D CLM_2979 glpX; fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D CLM_0607 fructose-1,6-bisphosphatase K04041 fbp3; fructose-1,6-bisphosphatase III [EC:3.1.3.11]
D CLM_3835 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C 00040 Pentose and glucuronate interconversions [PATH:cby00040]
D CLM_3519 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D CLM_2802 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D CLM_3884 putative L-iditol 2-dehydrogenase K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14]
D CLM_1429 aldolase, class II, AraD/FucA subfamily K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]
C 00051 Fructose and mannose metabolism [PATH:cby00051]
D CLM_0483 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D CLM_0145 putative mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D CLM_1429 aldolase, class II, AraD/FucA subfamily K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]
D CLM_3835 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D CLM_2979 glpX; fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D CLM_0607 fructose-1,6-bisphosphatase K04041 fbp3; fructose-1,6-bisphosphatase III [EC:3.1.3.11]
D CLM_3879 srlD; sorbitol-6-phosphate 2-dehydrogenase K00068 srlD; sorbitol-6-phosphate 2-dehydrogenase [EC:1.1.1.140]
D CLM_1923 pfkB; 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D CLM_3884 putative L-iditol 2-dehydrogenase K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14]
D CLM_0242 fba; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D CLM_0278 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D CLM_1131 dhaKL; dihydroxyacetone kinase, DhaK/DhaL subunit K00863 DAK; triose/dihydroxyacetone kinase / FAD-AMP lyase (cyclizing) [EC:2.7.1.28 2.7.1.29 4.6.1.15]
D CLM_0187 rpiB; ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D CLM_3215 PTS system sorbose-specific iic component K02795 manY; mannose PTS system EIIC component
D CLM_3216 PTS system, mannose/fructose/sorbose family, IID component K02796 manZ; mannose PTS system EIID component
D CLM_3880 PTS system, glucitol/sorbitol-specific, IIA component K02781 srlB; glucitol/sorbitol PTS system EIIA component [EC:2.7.1.198]
D CLM_3881 PTS system, glucitol/sorbitol-specific, IIBC component K02782 srlE; glucitol/sorbitol PTS system EIIB component [EC:2.7.1.198]
D CLM_3882 PTS system, glucitol/sorbitol-specific, IIC component K02783 srlA; glucitol/sorbitol PTS system EIIC component
C 00052 Galactose metabolism [PATH:cby00052]
D CLM_3043 NAD-dependent epimerase/dehydratase family protein K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D CLM_3145 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D CLM_2304 NAD-dependent epimerase/dehydratase family protein K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D CLM_3519 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D CLM_3521 phosphoglucomutase/phosphomannomutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D CLM_4124 phosphoglucomutase/phosphomannomutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D CLM_1845 putative glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D CLM_3049 glf; UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D CLM_3835 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D CLM_2210 class II aldolase, tagatose bisphosphate family K08302 gatY-kbaY; tagatose 1,6-diphosphate aldolase GatY/KbaY [EC:4.1.2.40]
D CLM_1846 glycosyl hydrolase, family 13 K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
C 00053 Ascorbate and aldarate metabolism [PATH:cby00053]
D CLM_2364 putative PTS system, L-ascorbate family, IIA component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D CLM_2363 putative PTS system, L-Ascorbate family, IIB component K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D CLM_2362 putative PTS system, L-ascorbate family, IIC component K03475 ulaA; ascorbate PTS system EIIC component
D CLM_1257 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00500 Starch and sucrose metabolism [PATH:cby00500]
D CLM_1521 PTS system, IIBC components K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211]
D CLM_1846 glycosyl hydrolase, family 13 K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D CLM_3519 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D CLM_3804 PTS system, lactose/cellobiose-specific family, IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D CLM_3805 PTS system, lactose/cellobiose-specific family, IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D CLM_3807 PTS system, lactose/cellobiose family, IIC component K02761 celB; cellobiose PTS system EIIC component
D CLM_3808 glycosyl hydrolase, family 4 K01222 E3.2.1.86A; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D CLM_1021 glycosyl hydrolase, family 1 K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D CLM_1355 putative beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D CLM_0337 PTS system, glucose/glucoside family, IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D CLM_3201 ptbA; PTS system, glucose subfamily, IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D CLM_0348 PTS system, glucose family, IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D CLM_0330 PTS system, glucose family, EIIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D CLM_0327 PTS system, maltose/glucose-specfic, IIBC component K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]
D CLM_0346 PTS system, glucose/maltose-specfic, IIBC component K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]
D CLM_1847 PTS system, glucose/glucoside family, IIBC component K20108 malT; maltose PTS system EIICB or EIICBA component [EC:2.7.1.208]
D CLM_0335 PTS system, glucose/glucoside family, IIBC component K02750 glvC; alpha-glucoside PTS system EIICB component [EC:2.7.1.208 2.7.1.-]
D CLM_1848 endonuclease/exonuclease/phosphatase family protein K06896 mapP; maltose 6'-phosphate phosphatase [EC:3.1.3.90]
D CLM_0347 glvA; maltose-6'-phosphate glucosidase K01232 glvA; maltose-6'-phosphate glucosidase [EC:3.2.1.122]
D CLM_0336 glvA; maltose-6'-phosphate glucosidase K01232 glvA; maltose-6'-phosphate glucosidase [EC:3.2.1.122]
D CLM_2204 treP; PTS system, trehalose-specific IIBC component K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201]
D CLM_2205 treC; alpha,alpha-phosphotrehalase K01226 treC; trehalose-6-phosphate hydrolase [EC:3.2.1.93]
D CLM_3521 phosphoglucomutase/phosphomannomutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D CLM_4124 phosphoglucomutase/phosphomannomutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D CLM_1845 putative glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D CLM_3712 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:cby00520]
D CLM_3196 glycosyl hydrolase, family 18 K01183 E3.2.1.14; chitinase [EC:3.2.1.14]
D CLM_1214 chiA; chitinase A K01183 E3.2.1.14; chitinase [EC:3.2.1.14]
D CLM_1240 putative glycosyl hydrolase K01183 E3.2.1.14; chitinase [EC:3.2.1.14]
D CLM_0871 glycosyl hydrolase, family 18 K01183 E3.2.1.14; chitinase [EC:3.2.1.14]
D CLM_0337 PTS system, glucose/glucoside family, IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D CLM_3201 ptbA; PTS system, glucose subfamily, IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D CLM_0348 PTS system, glucose family, IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D CLM_0330 PTS system, glucose family, EIIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D CLM_3202 nagE; PTS system, N-acetylglucosamine-specific, IIBC component K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D CLM_3198 nagA; N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
D CLM_3197 nagB; glucosamine-6-phosphate deaminase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6]
D CLM_3875 glmS; glutamine-fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D CLM_3886 glmM; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D CLM_4037 glmU; UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D CLM_1520 murQ; N-acetylmuramic acid 6-phosphate etherase K07106 murQ; N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126]
D CLM_4058 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D CLM_0203 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D CLM_3840 murB; UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D CLM_0192 mnaA; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D CLM_3514 UDP-glucose/GDP-mannose dehydrogenase family K13015 wbpA; UDP-N-acetyl-D-glucosamine dehydrogenase [EC:1.1.1.136]
D CLM_3513 oxidoreductase, NAD-binding Rossmann fold family K13020 wlbA; UDP-N-acetyl-2-amino-2-deoxyglucuronate dehydrogenase [EC:1.1.1.335]
D CLM_0977 putative pleiotropic regulatory protein K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98]
D CLM_3506 UDP-N-acetylglucosamine 2-epimerase K13019 wbpI; UDP-GlcNAc3NAcA epimerase [EC:5.1.3.23]
D CLM_3086 pseI; pseudaminic acid synthase K15898 pseI; pseudaminic acid synthase [EC:2.5.1.97]
D CLM_0327 PTS system, maltose/glucose-specfic, IIBC component K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]
D CLM_0346 PTS system, glucose/maltose-specfic, IIBC component K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]
D CLM_1502 ptsG; PTS system, glucose-specific, IIABC component K20118 ptsG; glucose PTS system EIICBA or EIICB component [EC:2.7.1.199]
D CLM_3120 PTS system, glucose family, IIABC component K20118 ptsG; glucose PTS system EIICBA or EIICB component [EC:2.7.1.199]
D CLM_1845 putative glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D CLM_3521 phosphoglucomutase/phosphomannomutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D CLM_4124 phosphoglucomutase/phosphomannomutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D CLM_3519 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D CLM_3043 NAD-dependent epimerase/dehydratase family protein K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D CLM_3145 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D CLM_2304 NAD-dependent epimerase/dehydratase family protein K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D CLM_3049 glf; UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D CLM_3215 PTS system sorbose-specific iic component K02795 manY; mannose PTS system EIIC component
D CLM_3216 PTS system, mannose/fructose/sorbose family, IID component K02796 manZ; mannose PTS system EIID component
D CLM_3712 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D CLM_0483 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D CLM_0145 putative mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
C 00620 Pyruvate metabolism [PATH:cby00620]
D CLM_3126 pyruvate ferredoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D CLM_1345 pyruvate ferredoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D CLM_3889 putative 2-oxoacid:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D CLM_3888 putative 2-oxoacid:acceptor oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D CLM_1874 acoC; TPP-dependent acetoin dehydrogenase complex, E2 component, dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D CLM_0819 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CLM_1875 acoL; TPP-dependent acetoin dehydrogenase complex, E3 component, dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CLM_3627 pfl; formate acetyltransferase 1 K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D CLM_2316 eutE; acetaldehyde dehydrogenase (acetylating) K00132 E1.2.1.10; acetaldehyde dehydrogenase (acetylating) [EC:1.2.1.10]
D CLM_0413 adhE; aldehyde-alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D CLM_2753 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D CLM_2754 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D CLM_3834 pykA; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D CLM_4086 accA; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D CLM_4090 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D CLM_4088 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D CLM_4087 accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D CLM_1257 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D CLM_1164 putative glycolate oxidase K26113 lctD; lactate dehydrogenase (NAD+,ferredoxin) subunit LctD [EC:1.1.1.436]
D CLM_1163 electron transfer flavoprotein, alpha subunit/FixB family protein K26114 lctC; lactate dehydrogenase (NAD+,ferredoxin) subunit LctC
D CLM_1162 electron transfer flavoprotein, beta subunit/FixA family protein K26115 lctB; lactate dehydrogenase (NAD+,ferredoxin) subunit LctB
D CLM_1754 ldh; L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D CLM_3716 ldhA; D-lactate dehydrogenase K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28]
D CLM_1138 oxidoreductase, aldo/keto reductase family K23257 yvgN; methylglyoxal/glyoxal reductase [EC:1.1.1.283 1.1.1.-]
D CLM_0738 lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D CLM_1765 glyoxalase family protein K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D CLM_3462 metallo-beta-lactamase family protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D CLM_1161 conserved hypothetical protein K22373 larA; lactate racemase [EC:5.1.2.1]
D CLM_2236 conserved hypothetical protein K22373 larA; lactate racemase [EC:5.1.2.1]
D CLM_1971 conserved hypothetical protein K22373 larA; lactate racemase [EC:5.1.2.1]
D CLM_0260 malate dehydrogenase (oxaloacetate-decarboxylating) K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D CLM_3746 pyc; pyruvate carboxylase K01958 PC; pyruvate carboxylase [EC:6.4.1.1]
D CLM_3909 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha region K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2]
D CLM_3908 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta region K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2]
D CLM_3336 ppdK; pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D CLM_3612 thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:cby00630]
D CLM_0497 aconitase/isopropylmalate dehydratase family protein K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D CLM_3612 thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D CLM_4056 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CLM_2902 glyA; glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D CLM_0817 gcvPA; glycine cleavage system P protein, subunit 1 K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2]
D CLM_0818 gcvPB; glycine cleavage system P protein, subunit 2 K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2]
D CLM_0815 gcvT; glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D CLM_0819 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CLM_1875 acoL; TPP-dependent acetoin dehydrogenase complex, E3 component, dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CLM_0816 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D CLM_2440 glxK; glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D CLM_0350 eda; 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D CLM_1003 oxdD; oxalate decarboxylase K01569 oxdD; oxalate decarboxylase [EC:4.1.1.2]
C 00640 Propanoate metabolism [PATH:cby00640]
D CLM_2753 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D CLM_2754 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D CLM_0819 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CLM_1875 acoL; TPP-dependent acetoin dehydrogenase complex, E3 component, dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CLM_3627 pfl; formate acetyltransferase 1 K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D CLM_3611 bcd; butyryl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1]
D CLM_4086 accA; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D CLM_4090 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D CLM_4088 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D CLM_4087 accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D CLM_1754 ldh; L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D CLM_1132 dhaD; glycerol dehydrogenase K00005 gldA; glycerol dehydrogenase [EC:1.1.1.6]
D CLM_2215 glycerol dehydrogenase K00005 gldA; glycerol dehydrogenase [EC:1.1.1.6]
D CLM_1138 oxidoreductase, aldo/keto reductase family K23257 yvgN; methylglyoxal/glyoxal reductase [EC:1.1.1.283 1.1.1.-]
C 00650 Butanoate metabolism [PATH:cby00650]
D CLM_3612 thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D CLM_3613 hbd; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D CLM_3614 crt; 3-hydroxybutyryl-CoA dehydratase K01715 crt; enoyl-CoA hydratase [EC:4.2.1.17]
D CLM_3611 bcd; butyryl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1]
D CLM_3218 CoA-transferase, A subunit K01034 atoD; acetate CoA/acetoacetate CoA-transferase alpha subunit [EC:2.8.3.8 2.8.3.9]
D CLM_3219 CoA-transferase, B subunit K01035 atoA; acetate CoA/acetoacetate CoA-transferase beta subunit [EC:2.8.3.8 2.8.3.9]
D CLM_3892 buk; butyrate kinase K00929 buk; butyrate kinase [EC:2.7.2.7]
D CLM_3894 buk; butyrate kinase K00929 buk; butyrate kinase [EC:2.7.2.7]
D CLM_3893 ptb; phosphate butyryltransferase K00634 ptb; phosphate butyryltransferase [EC:2.3.1.19]
D CLM_3525 phosphate acetyl/butyryl transferase K00634 ptb; phosphate butyryltransferase [EC:2.3.1.19]
D CLM_2316 eutE; acetaldehyde dehydrogenase (acetylating) K00132 E1.2.1.10; acetaldehyde dehydrogenase (acetylating) [EC:1.2.1.10]
D CLM_0413 adhE; aldehyde-alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D CLM_1584 NADH-dependent butanol dehydrogenase K00100 bdhAB; butanol dehydrogenase [EC:1.1.1.-]
D CLM_2134 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D CLM_3627 pfl; formate acetyltransferase 1 K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D CLM_3126 pyruvate ferredoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D CLM_1345 pyruvate ferredoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D CLM_3889 putative 2-oxoacid:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D CLM_3888 putative 2-oxoacid:acceptor oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D CLM_2420 oxidoreductase, zinc-binding dehydrogenase family K00004 BDH; (R,R)-butanediol dehydrogenase / meso-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.4 1.1.1.- 1.1.1.303]
C 00660 C5-Branched dibasic acid metabolism
C 00562 Inositol phosphate metabolism [PATH:cby00562]
D CLM_2998 putative phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3]
D CLM_0278 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:cby00190]
D CLM_2009 putative Fe] hydrogenase, electron-transfer subunit K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D CLM_2008 putative [Fe] hydrogenase, electron-transfer subunit K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D CLM_2007 iron hydrogenase 1 K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D CLM_0198 atpA; ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D CLM_0200 atpD; ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D CLM_0199 atpG; ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D CLM_0197 atpH; ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D CLM_0201 atpC; ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D CLM_0194 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D CLM_0196 atpF; ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D CLM_0195 atpE; ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D CLM_2989 V-type ATPase, A subunit K02117 ATPVA; V/A-type H+/Na+-transporting ATPase subunit A [EC:7.1.2.2 7.2.2.1]
D CLM_2988 V-type ATPase, B subunit K02118 ATPVB; V/A-type H+/Na+-transporting ATPase subunit B
D CLM_2991 V-type ATPase, C subunit K02119 ATPVC; V/A-type H+/Na+-transporting ATPase subunit C
D CLM_2987 V-type ATPase, D subunit K02120 ATPVD; V/A-type H+/Na+-transporting ATPase subunit D
D CLM_2992 V-type ATPase, E subunit K02121 ATPVE; V/A-type H+/Na+-transporting ATPase subunit E
D CLM_2990 V-type ATPase, G subunit K02122 ATPVF; V/A-type H+/Na+-transporting ATPase subunit F
D CLM_2995 putative V-type ATPase, G subunit K02107 ATPVG; V/A-type H+/Na+-transporting ATPase subunit G/H
D CLM_2994 V-type ATPase, I subunit K02123 ATPVI; V/A-type H+/Na+-transporting ATPase subunit I
D CLM_2993 V-type ATPase, K subunit K02124 ATPVK; V/A-type H+/Na+-transporting ATPase subunit K
D CLM_3001 putative manganese-dependent inorganic pyrophosphatase K15986 ppaC; manganese-dependent inorganic pyrophosphatase [EC:3.6.1.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation in photosynthetic organisms
C 00720 Carbon fixation pathways in prokaryotes
C 00680 Methane metabolism [PATH:cby00680]
D CLM_1506 carbon monoxide dehydrogenase K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4]
D CLM_2421 carbon monoxide dehydrogenase K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4]
D CLM_1507 nitrate reductase, iron-sulfur subunit K00196 cooF; anaerobic carbon-monoxide dehydrogenase iron sulfur subunit
D CLM_2902 glyA; glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D CLM_0280 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D CLM_1131 dhaKL; dihydroxyacetone kinase, DhaK/DhaL subunit K00863 DAK; triose/dihydroxyacetone kinase / FAD-AMP lyase (cyclizing) [EC:2.7.1.28 2.7.1.29 4.6.1.15]
D CLM_0242 fba; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D CLM_2979 glpX; fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D CLM_0607 fructose-1,6-bisphosphatase K04041 fbp3; fructose-1,6-bisphosphatase III [EC:3.1.3.11]
D CLM_3835 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D CLM_1911 formylmethanofuran dehydrogenase E subunit-related protein K11261 fwdE; formylmethanofuran dehydrogenase subunit E [EC:1.2.7.12]
D CLM_2753 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D CLM_2754 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D CLM_0279 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D CLM_1283 D-isomer specific 2-hydroxyacid dehydrogenase family protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D CLM_1732 mtbC; dimethylamine corrinoid protein K16179 mtbC; dimethylamine corrinoid protein
D CLM_4046 putative 2-phosphosulfolactate phosphatase K05979 comB; 2-phosphosulfolactate phosphatase [EC:3.1.3.71]
C 00910 Nitrogen metabolism [PATH:cby00910]
D CLM_0807 nifH; nitrogenase iron protein K02588 nifH; nitrogenase iron protein NifH
D CLM_3158 hcp; hydroxylamine reductase K05601 hcp; hydroxylamine reductase [EC:1.7.99.1]
D CLM_4098 oxidoreductase, 2-nitropropane dioxygenase family K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16]
D CLM_1968 gluD; glutamate dehydrogenase, NAD-specific K00260 gudB; glutamate dehydrogenase [EC:1.4.1.2]
D CLM_4056 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CLM_1886 gltA; glutamate synthase (NADPH), homotetrameric K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D CLM_3738 gltA; glutamate synthase (NADPH), homotetrameric K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D CLM_2901 arcC; carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
D CLM_1720 hypothetical protein K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:cby00920]
D CLM_2709 DHH family protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
D CLM_1108 asrA; sulfite reductase, subunit A K16950 asrA; anaerobic sulfite reductase subunit A
D CLM_1109 asrB; sulfite reductase, subunit B K16951 asrB; anaerobic sulfite reductase subunit B
D CLM_1110 arsC; anaerobic sulfite reductase, subunit C K00385 asrC; anaerobic sulfite reductase subunit C
D CLM_0943 rhodanese domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D CLM_2978 putative thiosulfate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D CLM_0256 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D CLM_0866 cysteine synthase family protein K01738 cysK; cysteine synthase [EC:2.5.1.47]
D CLM_0255 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D CLM_1330 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D CLM_2090 metA; homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:cby00061]
D CLM_4086 accA; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D CLM_4090 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D CLM_4088 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D CLM_4087 accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D CLM_4095 acpP; acyl carrier protein K02078 acpP; acyl carrier protein
D CLM_2749 acpP; acyl carrier protein K02078 acpP; acyl carrier protein
D CLM_4093 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D CLM_0856 3-oxoacyl-[acyl-carrier-protein] synthase III, homolog K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D CLM_4096 fabH; 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D CLM_4091 fabF; 3-oxoacyl-(acyl-carrier-protein) synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D CLM_0594 oxidoreductase, short chain dehydrogenase/reductase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CLM_4092 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CLM_4089 fabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D CLM_4094 oxidoreductase, 2-nitropropane dioxygenase family K02371 fabK; enoyl-[acyl-carrier protein] reductase II [EC:1.3.1.9]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:cby00071]
D CLM_3612 thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D CLM_3611 bcd; butyryl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1]
D CLM_0413 adhE; aldehyde-alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D CLM_1257 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:cby00561]
D CLM_2440 glxK; glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D CLM_1257 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D CLM_1131 dhaKL; dihydroxyacetone kinase, DhaK/DhaL subunit K00863 DAK; triose/dihydroxyacetone kinase / FAD-AMP lyase (cyclizing) [EC:2.7.1.28 2.7.1.29 4.6.1.15]
D CLM_1132 dhaD; glycerol dehydrogenase K00005 gldA; glycerol dehydrogenase [EC:1.1.1.6]
D CLM_2215 glycerol dehydrogenase K00005 gldA; glycerol dehydrogenase [EC:1.1.1.6]
D CLM_3150 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D CLM_2750 plsX; fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D CLM_0495 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D CLM_0258 plsD; glycerol-3-phosphate O-acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D CLM_3342 diacylglycerol kinase/PAP2 family protein K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D CLM_1002 lipA; triacylglycerol lipase K01046 lip; triacylglycerol lipase [EC:3.1.1.3]
D CLM_2277 triacylglycerol lipase K01046 lip; triacylglycerol lipase [EC:3.1.1.3]
D CLM_0170 conserved hypothetical protein K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315]
D CLM_3257 sulfatase family protein K19005 ltaS; lipoteichoic acid synthase [EC:2.7.8.20]
D CLM_0703 sulfatase family protein K19005 ltaS; lipoteichoic acid synthase [EC:2.7.8.20]
C 00564 Glycerophospholipid metabolism [PATH:cby00564]
D CLM_2823 NAD-dependent glycerol-3-phosphate dehydrogenase family protein K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D CLM_2451 oxidoreductase, FAD/[2Fe-2S]-binding K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D CLM_1228 FAD-dependent oxidoreductase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D CLM_0495 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D CLM_0258 plsD; glycerol-3-phosphate O-acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D CLM_3342 diacylglycerol kinase/PAP2 family protein K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D CLM_2998 putative phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3]
D CLM_3323 glycerophosphoryl diester phosphodiesterase family protein K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D CLM_1343 glycerophosphoryl diester phosphodiesterase family protein K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D CLM_3623 glycerophosphoryl diester phosphodiesterase family protein K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D CLM_2723 cdsA; phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D CLM_0247 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D CLM_0028 psd; phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D CLM_1176 CDP-alcohol phosphatidyltransferase family protein K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D CLM_2698 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D CLM_3038 cls; cardiolipin synthetase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
C 00565 Ether lipid metabolism
D CLM_2998 putative phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3]
C 00600 Sphingolipid metabolism [PATH:cby00600]
D CLM_1353 O-glycosyl hydrolase, family 30 K01201 GBA; glucosylceramidase [EC:3.2.1.45]
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism
C 01040 Biosynthesis of unsaturated fatty acids
D CLM_3295 lipase/acylhydrolase, GDSL family K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:cby00230]
D CLM_0557 hydrolase, NUDIX family K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D CLM_2030 hydrolase, NUDIX family K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D CLM_3521 phosphoglucomutase/phosphomannomutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D CLM_4124 phosphoglucomutase/phosphomannomutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D CLM_4036 prsA; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D CLM_3273 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D CLM_3308 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D CLM_3269 purD; phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D CLM_3271 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D CLM_2887 phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
D CLM_3272 purM; phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D CLM_3275 purE; phosphoribosylaminoimidazole carboxylase, catalytic subunit K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D CLM_3274 purC; phosphoribosylaminoimidazolesuccinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D CLM_2688 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D CLM_3270 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D CLM_3465 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D CLM_2222 phosphoribosyl transferase domain protein K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D CLM_0283 surE; acid phosphatase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D CLM_2025 punA; purine nucleoside phosphorylase I, inosine and guanosine-specific K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D CLM_3593 conserved hypothetical protein K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2]
D CLM_2833 conserved hypothetical protein TIGR00726 K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D CLM_4011 hpt; hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D CLM_3486 hpt; hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D CLM_3729 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D CLM_3695 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D CLM_0385 xpt; xanthine phosphoribosyltransferase K03816 xpt; xanthine phosphoribosyltransferase [EC:2.4.2.22]
D CLM_1295 xpt; xanthine phosphoribosyltransferase K03816 xpt; xanthine phosphoribosyltransferase [EC:2.4.2.22]
D CLM_1444 xanthine dehydrogenase family protein, molybdopterin-binding subunit K00087 ygeS; xanthine dehydrogenase molybdenum-binding subunit [EC:1.17.1.4]
D CLM_1445 xanthine dehydrogenase family protein, FAD-binding subunit K13479 ygeT; xanthine dehydrogenase FAD-binding subunit [EC:1.17.1.4]
D CLM_1446 xanthine dehydrogenase family protein, iron-sulfur binding subunit K13480 ygeU; xanthine dehydrogenase iron-sulfur-binding subunit
D CLM_3728 guaA; GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D CLM_1447 guanine deaminase K01487 guaD; guanine deaminase [EC:3.5.4.3]
D CLM_2814 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D CLM_3178 nrdA; ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D CLM_3177 nrdB; ribonucleoside-diphosphate reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D CLM_0137 nrdD; anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D CLM_3334 deoxynucleotide triphosphohydrolase family protein K01129 dgt; dGTPase [EC:3.1.5.1]
D CLM_3464 relA; GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D CLM_0233 RelA/SpoT domain protein K07816 E2.7.6.5; GTP pyrophosphokinase [EC:2.7.6.5]
D CLM_0240 putative adenylyl cyclase CyaB K05873 cyaB; adenylate cyclase, class 2 [EC:4.6.1.1]
D CLM_4121 purA; adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D CLM_1145 add; adenosine deaminase K01488 add; adenosine deaminase [EC:3.5.4.4]
D CLM_0352 ade; adenine deaminase K01486 ade; adenine deaminase [EC:3.5.4.2]
D CLM_3927 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D CLM_3290 conserved hypothetical protein K06928 NTPCR; nucleoside-triphosphatase [EC:3.6.1.15]
D CLM_2901 arcC; carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
C 00240 Pyrimidine metabolism [PATH:cby00240]
D CLM_2001 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D CLM_3089 ATP domain protein K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D CLM_2002 carA; carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D CLM_3653 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D CLM_3652 pyrI; aspartate carbamoyltransferase, regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit
D CLM_3651 pyrC; dihydroorotase, multifunctional complex type K01465 URA4; dihydroorotase [EC:3.5.2.3]
D CLM_3648 pyrD; dihydroorotate oxidase K17828 pyrDI; dihydroorotate dehydrogenase (NAD+) catalytic subunit [EC:1.3.1.14]
D CLM_3649 pyrK; dihydroorotate dehydrogenase, electron transfer subunit K02823 pyrDII; dihydroorotate dehydrogenase electron transfer subunit
D CLM_3647 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D CLM_3650 pyrF; orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D CLM_2726 pyrH; UMP kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D CLM_3400 maf; septum formation protein Maf K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D CLM_0175 pyrG; CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D CLM_1965 cmk; cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D CLM_2861 udk; uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48]
D CLM_0245 putative threonyl-tRNA synthetase/uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48]
D CLM_0283 surE; acid phosphatase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D CLM_3593 conserved hypothetical protein K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2]
D CLM_0188 upp; uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D CLM_3184 pyrR; pyrimidine operon regulatory protein/uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D CLM_1715 pyrR; pyrimidine operon regulatory protein/uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D CLM_1319 kinase, PfkB family K16328 psuK; pseudouridine kinase [EC:2.7.1.83]
D CLM_1320 indigoidine synthase A family protein K16329 psuG; pseudouridylate synthase [EC:4.2.1.70]
D CLM_2024 pdp; pyrimidine-nucleoside phosphorylase K00756 pdp; pyrimidine-nucleoside phosphorylase [EC:2.4.2.2]
D CLM_3341 cdd; cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D CLM_0305 cytidine/deoxycytidylate deaminase family protein K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D CLM_3820 cytidine/deoxycytidylate deaminase family protein K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D CLM_0137 nrdD; anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D CLM_3178 nrdA; ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D CLM_3177 nrdB; ribonucleoside-diphosphate reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D CLM_0190 cytidine/deoxycytidylate deaminase family protein K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D CLM_0097 putative thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D CLM_1391 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D CLM_0179 tdk; thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21]
D CLM_0918 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D CLM_3970 thyX; thymidylate synthase, flavin-dependent K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
D CLM_3183 pyridine nucleotide-disulphide oxidoreductase family protein K17722 preT; dihydropyrimidine dehydrogenase (NAD+) subunit PreT [EC:1.3.1.1]
D CLM_3182 dihydroorotate dehydrogenase family protein K17723 preA; dihydropyrimidine dehydrogenase (NAD+) subunit PreA [EC:1.3.1.1]
D CLM_3282 hydA; dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
D CLM_0737 atcC; N-carbamyl-L-cysteine amidohydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:cby00250]
D CLM_2691 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CLM_1961 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CLM_1169 pyridoxal-phosphate-dependent aminotransferase family K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D CLM_1611 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D CLM_2817 ansA; L-asparaginase, type II K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D CLM_1740 asnA; aspartate--ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1]
D CLM_1978 hydrolase, carbon-nitrogen family K13566 NIT2; omega-amidase [EC:3.5.1.3]
D CLM_1317 aminotransferase, classes I and II K09758 asdA; aspartate 4-decarboxylase [EC:4.1.1.12]
D CLM_3035 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D CLM_3034 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D CLM_4121 purA; adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D CLM_2688 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D CLM_3653 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D CLM_3652 pyrI; aspartate carbamoyltransferase, regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit
D CLM_2134 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D CLM_1886 gltA; glutamate synthase (NADPH), homotetrameric K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D CLM_3738 gltA; glutamate synthase (NADPH), homotetrameric K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D CLM_1968 gluD; glutamate dehydrogenase, NAD-specific K00260 gudB; glutamate dehydrogenase [EC:1.4.1.2]
D CLM_4056 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CLM_2001 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D CLM_3089 ATP domain protein K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D CLM_2002 carA; carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D CLM_3173 glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D CLM_3875 glmS; glutamine-fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D CLM_3273 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D CLM_3308 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:cby00260]
D CLM_2702 dapG; aspartokinase I K00928 lysC; aspartate kinase [EC:2.7.2.4]
D CLM_1881 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D CLM_3781 lysC; aspartokinase II K00928 lysC; aspartate kinase [EC:2.7.2.4]
D CLM_3564 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D CLM_1882 hom; homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D CLM_2091 hom; homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D CLM_1880 thrB; homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D CLM_1879 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D CLM_1127 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D CLM_2439 putative low specificity L-threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48]
D CLM_2902 glyA; glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D CLM_2440 glxK; glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D CLM_0279 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D CLM_1283 D-isomer specific 2-hydroxyacid dehydrogenase family protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D CLM_1349 amine oxidase, flavin-containing K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D CLM_0817 gcvPA; glycine cleavage system P protein, subunit 1 K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2]
D CLM_0818 gcvPB; glycine cleavage system P protein, subunit 2 K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2]
D CLM_0815 gcvT; glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D CLM_0819 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CLM_1875 acoL; TPP-dependent acetoin dehydrogenase complex, E3 component, dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CLM_0816 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D CLM_0247 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D CLM_1369 sdhB; L-serine dehydratase, iron-sulfur-dependent, beta subunit K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D CLM_1370 sdhA; L-serine dehydratase, iron-sulfur-dependent, alpha subunit K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D CLM_3973 ilvA; threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
C 00270 Cysteine and methionine metabolism [PATH:cby00270]
D CLM_0256 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D CLM_0866 cysteine synthase family protein K01738 cysK; cysteine synthase [EC:2.5.1.47]
D CLM_0255 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D CLM_1330 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D CLM_0868 metC; cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D CLM_1576 aminotransferase, classes I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D CLM_2181 aminotransferase, classes I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D CLM_1865 putative 5-methyltetrahydrofolate--homocysteine methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D CLM_0216 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D CLM_3811 speD; S-adenosylmethionine decarboxylase K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D CLM_1708 mtnN; MTA/SAH nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D CLM_1426 mtnK; S-methyl-5-thioribose kinase K00899 mtnK; 5-methylthioribose kinase [EC:2.7.1.100]
D CLM_2833 conserved hypothetical protein TIGR00726 K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D CLM_2387 amidohydrolase family protein K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28]
D CLM_1427 mtnA; S-methyl-5-thioribose-1-phosphate isomerase K08963 mtnA; methylthioribose-1-phosphate isomerase [EC:5.3.1.23]
D CLM_0033 megL; methionine gamma-lyase K01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11]
D CLM_3304 conserved hypothetical protein K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14]
D CLM_0867 luxS; S-ribosylhomocysteinase LuxS K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D CLM_2702 dapG; aspartokinase I K00928 lysC; aspartate kinase [EC:2.7.2.4]
D CLM_1881 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D CLM_3781 lysC; aspartokinase II K00928 lysC; aspartate kinase [EC:2.7.2.4]
D CLM_3564 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D CLM_1882 hom; homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D CLM_2091 hom; homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D CLM_2090 metA; homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D CLM_2092 O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D CLM_1051 ilvE; branched-chain-amino-acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D CLM_3122 putative branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D CLM_2691 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CLM_1961 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CLM_1169 pyridoxal-phosphate-dependent aminotransferase family K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D CLM_0943 rhodanese domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D CLM_2978 putative thiosulfate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D CLM_1754 ldh; L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D CLM_1317 aminotransferase, classes I and II K09758 asdA; aspartate 4-decarboxylase [EC:4.1.1.12]
D CLM_1369 sdhB; L-serine dehydratase, iron-sulfur-dependent, beta subunit K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D CLM_1370 sdhA; L-serine dehydratase, iron-sulfur-dependent, alpha subunit K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D CLM_1283 D-isomer specific 2-hydroxyacid dehydrogenase family protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
C 00280 Valine, leucine and isoleucine degradation [PATH:cby00280]
D CLM_1051 ilvE; branched-chain-amino-acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D CLM_3122 putative branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D CLM_0819 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CLM_1875 acoL; TPP-dependent acetoin dehydrogenase complex, E3 component, dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CLM_3611 bcd; butyryl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1]
D CLM_1257 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D CLM_3612 thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:cby00290]
D CLM_3973 ilvA; threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D CLM_0349 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D CLM_1051 ilvE; branched-chain-amino-acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D CLM_3122 putative branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
C 00300 Lysine biosynthesis [PATH:cby00300]
D CLM_1882 hom; homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D CLM_2091 hom; homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D CLM_2702 dapG; aspartokinase I K00928 lysC; aspartate kinase [EC:2.7.2.4]
D CLM_1881 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D CLM_3781 lysC; aspartokinase II K00928 lysC; aspartate kinase [EC:2.7.2.4]
D CLM_3564 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D CLM_3565 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D CLM_0942 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D CLM_3566 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D CLM_3568 putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D CLM_3788 putative dipeptidase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D CLM_2129 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D CLM_3780 lysA; diaminopimelate decarboxilase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D CLM_1959 aminotransferase, classes I and II K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-]
D CLM_1694 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D CLM_1695 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:cby00310]
D CLM_0819 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CLM_1875 acoL; TPP-dependent acetoin dehydrogenase complex, E3 component, dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CLM_3612 thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D CLM_3218 CoA-transferase, A subunit K01034 atoD; acetate CoA/acetoacetate CoA-transferase alpha subunit [EC:2.8.3.8 2.8.3.9]
D CLM_3219 CoA-transferase, B subunit K01035 atoA; acetate CoA/acetoacetate CoA-transferase beta subunit [EC:2.8.3.8 2.8.3.9]
D CLM_1257 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00220 Arginine biosynthesis [PATH:cby00220]
D CLM_2900 argF; ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D CLM_3035 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D CLM_3034 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D CLM_1828 arcA; arginine deiminase K01478 arcA; arginine deiminase [EC:3.5.3.6]
D CLM_0109 arcA; arginine deiminase K01478 arcA; arginine deiminase [EC:3.5.3.6]
D CLM_3173 glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D CLM_4056 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CLM_1968 gluD; glutamate dehydrogenase, NAD-specific K00260 gudB; glutamate dehydrogenase [EC:1.4.1.2]
D CLM_2901 arcC; carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
D CLM_2691 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CLM_1961 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CLM_1169 pyridoxal-phosphate-dependent aminotransferase family K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
C 00330 Arginine and proline metabolism [PATH:cby00330]
D CLM_3873 creatininase family protein K01470 E3.5.2.10; creatinine amidohydrolase [EC:3.5.2.10]
D CLM_3523 Orn/Lys/Arg decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19]
D CLM_1030 peptidyl-arginine deiminase, Porphyromonas-type K10536 aguA; agmatine deiminase [EC:3.5.3.12]
D CLM_3811 speD; S-adenosylmethionine decarboxylase K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D CLM_1257 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D CLM_1325 acetyltransferase, GNAT family K00657 speG; diamine N-acetyltransferase [EC:2.3.1.57]
D CLM_1349 amine oxidase, flavin-containing K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D CLM_3594 proC; pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D CLM_2246 pepIP; prolyl aminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D CLM_3595 formate acetyltransferase K23121 pflD; trans-4-hydroxy-L-proline dehydratase [EC:4.2.1.172]
D CLM_2691 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CLM_1961 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CLM_1169 pyridoxal-phosphate-dependent aminotransferase family K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D CLM_2770 proline racemase K01777 prdF; proline racemase [EC:5.1.1.4]
D CLM_2759 prdA; D-proline reductase, PrdA proprotein K10793 prdA; D-proline reductase (dithiol) PrdA [EC:1.21.4.1]
D CLM_2776 prdA; D-proline reductase, PrdA proprotein K10793 prdA; D-proline reductase (dithiol) PrdA [EC:1.21.4.1]
D CLM_2757 prdB; D-proline reductase, gamma subunit PrdB, selenocysteine-containing K10794 prdB; D-proline reductase (dithiol) PrdB [EC:1.21.4.1]
D CLM_2774 D-proline reductase, gamma subunit PrdB, selenocysteine-containing K10794 prdB; D-proline reductase (dithiol) PrdB [EC:1.21.4.1]
C 00340 Histidine metabolism [PATH:cby00340]
D CLM_1807 hisG; ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D CLM_1806 hisZ; ATP phosphoribosyltransferase, regulatory subunit K02502 hisZ; ATP phosphoribosyltransferase regulatory subunit
D CLM_1815 hisE; phosphoribosyl-ATP pyrophosphohydrolase K01523 hisE; phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31]
D CLM_1814 hisI; phosphoribosyl-AMP cyclohydrolase K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19]
D CLM_1811 hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D CLM_1810 hisH; imidazole glycerol phosphate synthase, glutamine amidotransferase subunit K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D CLM_1813 hisF; imidazoleglycerol phosphate synthase, cyclase subunit K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D CLM_1809 hisB; imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
D CLM_1812 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CLM_2878 hisJ; histidinol-phosphatase K04486 E3.1.3.15B; histidinol-phosphatase (PHP family) [EC:3.1.3.15]
D CLM_1808 hisD; histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D CLM_1257 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D CLM_1349 amine oxidase, flavin-containing K00274 MAO; monoamine oxidase [EC:1.4.3.4]
C 00350 Tyrosine metabolism [PATH:cby00350]
D CLM_2691 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CLM_1961 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CLM_1169 pyridoxal-phosphate-dependent aminotransferase family K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D CLM_1812 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CLM_1349 amine oxidase, flavin-containing K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D CLM_0413 adhE; aldehyde-alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D CLM_3717 ldhA; D-lactate dehydrogenase K23109 fldH; aromatic 2-oxoacid reductase [EC:1.1.1.110]
C 00360 Phenylalanine metabolism [PATH:cby00360]
D CLM_1349 amine oxidase, flavin-containing K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D CLM_3613 hbd; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D CLM_2691 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CLM_1961 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CLM_1169 pyridoxal-phosphate-dependent aminotransferase family K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D CLM_1812 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CLM_3577 acetyltransferase, GNAT family K03825 aaaT; L-phenylalanine/L-methionine N-acetyltransferase [EC:2.3.1.53 2.3.1.-]
D CLM_3717 ldhA; D-lactate dehydrogenase K23109 fldH; aromatic 2-oxoacid reductase [EC:1.1.1.110]
D CLM_2376 enr; 2-enoate reductase K10797 enr; 2-enoate reductase [EC:1.3.1.31]
C 00380 Tryptophan metabolism [PATH:cby00380]
D CLM_0819 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CLM_1875 acoL; TPP-dependent acetoin dehydrogenase complex, E3 component, dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CLM_3612 thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D CLM_1349 amine oxidase, flavin-containing K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D CLM_1257 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D CLM_3717 ldhA; D-lactate dehydrogenase K23109 fldH; aromatic 2-oxoacid reductase [EC:1.1.1.110]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:cby00400]
D CLM_1709 aroF; 3-deoxy-7-phosphoheptulonate synthase K03856 AROA2; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D CLM_1707 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D CLM_2357 putative 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D CLM_2115 aroQ; 3-dehydroquinate dehydratase, type II K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D CLM_2116 aroK; shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D CLM_1710 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D CLM_3412 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D CLM_1966 aroH; chorismate mutase K06208 aroH; chorismate mutase [EC:5.4.99.5]
D CLM_3405 pheB; ACT domain protein pheB K06209 pheB; chorismate mutase [EC:5.4.99.5]
D CLM_2691 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CLM_1961 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CLM_1169 pyridoxal-phosphate-dependent aminotransferase family K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D CLM_1812 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:cby00410]
D CLM_0503 panD; aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D CLM_0370 panD; aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D CLM_2134 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D CLM_1257 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D CLM_0504 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D CLM_3183 pyridine nucleotide-disulphide oxidoreductase family protein K17722 preT; dihydropyrimidine dehydrogenase (NAD+) subunit PreT [EC:1.3.1.1]
D CLM_3182 dihydroorotate dehydrogenase family protein K17723 preA; dihydropyrimidine dehydrogenase (NAD+) subunit PreA [EC:1.3.1.1]
D CLM_3282 hydA; dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
D CLM_0737 atcC; N-carbamyl-L-cysteine amidohydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
D CLM_3611 bcd; butyryl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1]
C 00430 Taurine and hypotaurine metabolism [PATH:cby00430]
D CLM_2134 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D CLM_1968 gluD; glutamate dehydrogenase, NAD-specific K00260 gudB; glutamate dehydrogenase [EC:1.4.1.2]
D CLM_2754 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D CLM_2753 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism [PATH:cby00440]
D CLM_0769 PHP domain protein K20859 phnPP; phosphoribosyl 1,2-cyclic phosphate 1,2-diphosphodiesterase [EC:3.1.4.57]
C 00450 Selenocompound metabolism [PATH:cby00450]
D CLM_0868 metC; cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D CLM_1576 aminotransferase, classes I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D CLM_2181 aminotransferase, classes I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D CLM_1865 putative 5-methyltetrahydrofolate--homocysteine methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D CLM_0033 megL; methionine gamma-lyase K01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11]
D CLM_3900 oxidoreductase, pyridine nucleotide-disulphide family K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D CLM_1412 putative thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D CLM_1418 trxB; thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D CLM_3280 putative selenate reductase, YgfK subunit K12527 ygfK; putative selenate reductase [EC:1.97.1.9]
D CLM_3372 selD; selenide, water dikinase, selenocysteine-containing K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D CLM_3371 selA; L-seryl-tRNA selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D CLM_0119 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:cby00460]
D CLM_2817 ansA; L-asparaginase, type II K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D CLM_1740 asnA; aspartate--ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1]
D CLM_2902 glyA; glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:cby00470]
D CLM_1900 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D CLM_3860 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D CLM_0535 ddlB; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D CLM_3173 glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D CLM_4055 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D CLM_4002 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D CLM_2129 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D CLM_3780 lysA; diaminopimelate decarboxilase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D CLM_2191 alanine racemase, N-terminal domain protein K21898 orr; ornithine racemase [EC:5.1.1.12]
D CLM_2219 alanine racemase, N-terminal domain protein K21898 orr; ornithine racemase [EC:5.1.1.12]
D CLM_2770 proline racemase K01777 prdF; proline racemase [EC:5.1.1.4]
D CLM_2759 prdA; D-proline reductase, PrdA proprotein K10793 prdA; D-proline reductase (dithiol) PrdA [EC:1.21.4.1]
D CLM_2776 prdA; D-proline reductase, PrdA proprotein K10793 prdA; D-proline reductase (dithiol) PrdA [EC:1.21.4.1]
D CLM_2757 prdB; D-proline reductase, gamma subunit PrdB, selenocysteine-containing K10794 prdB; D-proline reductase (dithiol) PrdB [EC:1.21.4.1]
D CLM_2774 D-proline reductase, gamma subunit PrdB, selenocysteine-containing K10794 prdB; D-proline reductase (dithiol) PrdB [EC:1.21.4.1]
C 00480 Glutathione metabolism [PATH:cby00480]
D CLM_2438 pepD; aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D CLM_3264 pepD; aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D CLM_1562 pepD; aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation
D CLM_1353 O-glycosyl hydrolase, family 30 K01201 GBA; glucosylceramidase [EC:3.2.1.45]
C 00540 Lipopolysaccharide biosynthesis
C 00542 O-Antigen repeat unit biosynthesis [PATH:cby00542]
D CLM_0191 tagO; undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:cby00541]
D CLM_3519 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D CLM_3043 NAD-dependent epimerase/dehydratase family protein K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D CLM_3145 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D CLM_2304 NAD-dependent epimerase/dehydratase family protein K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D CLM_3049 glf; UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D CLM_3084 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D CLM_2271 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D CLM_3085 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D CLM_2272 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D CLM_3081 lipopolysaccharide biosynthesis protein RffA K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59]
D CLM_0483 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D CLM_0145 putative mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D CLM_4037 glmU; UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D CLM_0192 mnaA; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D CLM_3086 pseI; pseudaminic acid synthase K15898 pseI; pseudaminic acid synthase [EC:2.5.1.97]
D CLM_3514 UDP-glucose/GDP-mannose dehydrogenase family K13015 wbpA; UDP-N-acetyl-D-glucosamine dehydrogenase [EC:1.1.1.136]
D CLM_3513 oxidoreductase, NAD-binding Rossmann fold family K13020 wlbA; UDP-N-acetyl-2-amino-2-deoxyglucuronate dehydrogenase [EC:1.1.1.335]
D CLM_0977 putative pleiotropic regulatory protein K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98]
D CLM_3506 UDP-N-acetylglucosamine 2-epimerase K13019 wbpI; UDP-GlcNAc3NAcA epimerase [EC:5.1.3.23]
C 00550 Peptidoglycan biosynthesis [PATH:cby00550]
D CLM_4058 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D CLM_0203 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D CLM_3840 murB; UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D CLM_4040 murC; UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D CLM_4002 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D CLM_1694 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D CLM_0535 ddlB; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D CLM_1695 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D CLM_2724 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D CLM_1503 undecaprenyl pyrophosphate synthetase homolog K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D CLM_0485 putative undecaprenol kinase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D CLM_0388 uppP; undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D CLM_0418 PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D CLM_1696 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D CLM_1023 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D CLM_3127 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D CLM_3488 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D CLM_3395 penicillin-binding protein K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D CLM_1693 stage V sporulation protein D K08384 spoVD; stage V sporulation protein D (sporulation-specific penicillin-binding protein)
D CLM_3845 penicillin-binding protein K05364 pbpA; penicillin-binding protein A
D CLM_2020 dacF; serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D CLM_2013 putative serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D CLM_3374 D-alanyl-D-alanine carboxypeptidase family protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D CLM_1581 D-alanyl-D-alanine carboxypeptidase family protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D CLM_1189 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D CLM_0717 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D CLM_0482 UDP-N-acetylmuramyl tripeptide synthetase homolog K23393 murT; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13]
D CLM_0481 glutamine amidotransferase, CobB/CobQ family K07009 gatD; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13]
C 00552 Teichoic acid biosynthesis [PATH:cby00552]
D CLM_0485 putative undecaprenol kinase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D CLM_0388 uppP; undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D CLM_0418 PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D CLM_0191 tagO; undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D CLM_3498 glycosyl transferase, WecB/TagA/CpsF family K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187]
D CLM_3377 putative cell envelope-related function transcriptional attenuator K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-]
D CLM_3054 cell envelope-related transcriptional attenuator domain protein K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-]
D CLM_0170 conserved hypothetical protein K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315]
D CLM_3257 sulfatase family protein K19005 ltaS; lipoteichoic acid synthase [EC:2.7.8.20]
D CLM_0703 sulfatase family protein K19005 ltaS; lipoteichoic acid synthase [EC:2.7.8.20]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:cby00543]
D CLM_0191 tagO; undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D CLM_3451 alginate O-acetyltransferase AlgI K19294 algI; alginate O-acetyltransferase complex protein AlgI
D CLM_0256 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:cby00730]
D CLM_3307 thiC; thiamine biosynthesis protein ThiC K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D CLM_0533 thiD; phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D CLM_0921 thiD; phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D CLM_2875 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D CLM_1333 aminotransferase, class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D CLM_4075 ThiH/BioB family protein K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19]
D CLM_2098 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D CLM_0532 thiM; hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D CLM_2460 thiM; hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D CLM_0531 thiE; thiamine-phosphate diphosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D CLM_3290 conserved hypothetical protein K06928 NTPCR; nucleoside-triphosphatase [EC:3.6.1.15]
D CLM_2803 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D CLM_2801 thiamine diphosphokinase K00949 thiN; thiamine pyrophosphokinase [EC:2.7.6.2]
D CLM_3927 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D CLM_0920 putative thiamine pyridinylase I K10811 E2.5.1.2; thiamine pyridinylase [EC:2.5.1.2]
C 00740 Riboflavin metabolism [PATH:cby00740]
D CLM_3260 ribAB; bifunctional riboflavin biosynthesis protein RibAB K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D CLM_3262 ribD; riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D CLM_3259 ribH; 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D CLM_3261 ribE; riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D CLM_2707 ribF; riboflavin biosynthesis protein RibF K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D CLM_0532 thiM; hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D CLM_2460 thiM; hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D CLM_0557 hydrolase, NUDIX family K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D CLM_2030 hydrolase, NUDIX family K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
C 00750 Vitamin B6 metabolism [PATH:cby00750]
D CLM_1564 pdxK; pyridoxal kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35]
D CLM_1879 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D CLM_1127 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
C 00760 Nicotinate and nicotinamide metabolism [PATH:cby00760]
D CLM_1611 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D CLM_1612 nadA; quinolinate synthetase complex, A subunit K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D CLM_1610 nadC; nicotinate-nucleotide diphosphorylase (carboxylating) K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D CLM_1587 putative nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D CLM_2025 punA; purine nucleoside phosphorylase I, inosine and guanosine-specific K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D CLM_0283 surE; acid phosphatase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D CLM_3379 nadD; nicotinate nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D CLM_0043 hydrolase, NUDIX family K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]
D CLM_0639 nadE; glutamine-dependent NAD(+) synthetase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
D CLM_1290 pncA family protein K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-]
D CLM_0089 NAD-dependent deacetylase, Sir2 family K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D CLM_2096 ppnK; ATP-NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
C 00770 Pantothenate and CoA biosynthesis [PATH:cby00770]
D CLM_0349 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D CLM_0505 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D CLM_1321 panE; 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D CLM_0504 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D CLM_4008 coaX; pantothenate kinase, type III K03525 coaX; type III pantothenate kinase [EC:2.7.1.33]
D CLM_2812 coaBC; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D CLM_2793 coaD; pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D CLM_3410 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D CLM_3863 acpS; holo-(acyl-carrier-protein) synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D CLM_2899 hypothetical protein K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-]
D CLM_0365 4'-phosphopantetheinyl transferase sfp K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-]
D CLM_1051 ilvE; branched-chain-amino-acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D CLM_3122 putative branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D CLM_3183 pyridine nucleotide-disulphide oxidoreductase family protein K17722 preT; dihydropyrimidine dehydrogenase (NAD+) subunit PreT [EC:1.3.1.1]
D CLM_3182 dihydroorotate dehydrogenase family protein K17723 preA; dihydropyrimidine dehydrogenase (NAD+) subunit PreA [EC:1.3.1.1]
D CLM_3282 hydA; dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
D CLM_0737 atcC; N-carbamyl-L-cysteine amidohydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
D CLM_0503 panD; aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D CLM_0370 panD; aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D CLM_1257 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00780 Biotin metabolism [PATH:cby00780]
D CLM_4091 fabF; 3-oxoacyl-(acyl-carrier-protein) synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D CLM_0594 oxidoreductase, short chain dehydrogenase/reductase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CLM_4092 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CLM_4089 fabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D CLM_2467 bioD; dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D CLM_4074 radical SAM domain protein K01012 bioB; biotin synthase [EC:2.8.1.6]
D CLM_2468 bioB; biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6]
D CLM_1275 birA; birA bifunctional protein K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:cby00785]
D CLM_0820 putative lipoate-protein ligase A K03800 lplA; lipoate---protein ligase [EC:6.3.1.20]
D CLM_1876 putative lipoate-protein ligase A K03800 lplA; lipoate---protein ligase [EC:6.3.1.20]
D CLM_0819 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CLM_1875 acoL; TPP-dependent acetoin dehydrogenase complex, E3 component, dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CLM_1874 acoC; TPP-dependent acetoin dehydrogenase complex, E2 component, dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D CLM_0817 gcvPA; glycine cleavage system P protein, subunit 1 K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2]
D CLM_0818 gcvPB; glycine cleavage system P protein, subunit 2 K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2]
D CLM_0815 gcvT; glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D CLM_0816 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:cby00790]
D CLM_1797 folE; GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D CLM_0973 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase K13940 sulD; dihydroneopterin aldolase / 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:4.1.2.25 2.7.6.3]
D CLM_0970 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D CLM_3575 folC; FolC bifunctional protein K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D CLM_3260 ribAB; bifunctional riboflavin biosynthesis protein RibAB K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D CLM_0969 queD; queuosine biosynthesis protein QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D CLM_1795 queD; queuosine biosynthesis protein QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D CLM_1796 radical SAM domain protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D CLM_1798 ExsB protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D CLM_2596 metallo-beta-lactamase family protein K06897 K06897; 7,8-dihydropterin-6-yl-methyl-4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate synthase [EC:2.5.1.105]
D CLM_0613 metallo-beta-lactamase family protein K06897 K06897; 7,8-dihydropterin-6-yl-methyl-4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate synthase [EC:2.5.1.105]
D CLM_1221 metallo-beta-lactamase family protein K06897 K06897; 7,8-dihydropterin-6-yl-methyl-4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate synthase [EC:2.5.1.105]
D CLM_2157 moaA; molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D CLM_2156 moaC; molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D CLM_2160 mog; molybdopterin biosynthesis enzyme Mog K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D CLM_2158 molybdopterin cofactor synthesis/binding domain protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D CLM_2159 moeA; molybdopterin biosynthesis enzyme MoeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D CLM_3287 molybdenum hydroxylase accessory protein, YgfJ family K07141 mocA; molybdenum cofactor cytidylyltransferase [EC:2.7.7.76]
D CLM_3220 conserved hypothetical protein K07141 mocA; molybdenum cofactor cytidylyltransferase [EC:2.7.7.76]
C 00670 One carbon pool by folate [PATH:cby00670]
D CLM_4009 fhs; formate--tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]
D CLM_1323 folD; methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D CLM_1322 putative methenyltetrahydrofolate cyclohydrolase K01500 fchA; methenyltetrahydrofolate cyclohydrolase [EC:3.5.4.9]
D CLM_2902 glyA; glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D CLM_3271 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D CLM_3270 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D CLM_2809 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D CLM_0815 gcvT; glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D CLM_1865 putative 5-methyltetrahydrofolate--homocysteine methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D CLM_0918 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D CLM_3970 thyX; thymidylate synthase, flavin-dependent K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
D CLM_1863 metF; methylenetetrahydrofolate reductase (NAD(P)H) K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D CLM_2969 5-formyltetrahydrofolate cyclo-ligase family protein K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:cby00860]
D CLM_1071 hemB; porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D CLM_1068 hemC; hydroxymethylbilane synthase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D CLM_2450 uroporphyrinogen decarboxylase family protein K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D CLM_1178 conserved hypothetical protein K00230 hemG; menaquinone-dependent protoporphyrinogen oxidase [EC:1.3.5.3]
D CLM_1069 uroporphyrinogen III synthase/methyltransferase K13542 cobA-hemD; uroporphyrinogen III methyltransferase / synthase [EC:2.1.1.107 4.2.1.75]
D CLM_1067 precorrin-2 dehydrogenase K24866 sirC; precorrin-2 dehydrogenase [EC:1.3.1.76]
D CLM_1103 cbiK; anaerobic sirohydrochlorin cobaltochelatase K02190 cbiK; sirohydrochlorin cobaltochelatase [EC:4.99.1.3]
D CLM_1097 cobI; precorrin-2 C(20)-methyltransferase K03394 cobI-cbiL; precorrin-2/cobalt-factor-2 C20-methyltransferase [EC:2.1.1.130 2.1.1.151]
D CLM_1100 cobJ; precorrin-3B C(17)-methyltransferase K05934 cobJ; precorrin-3B C17-methyltransferase / cobalt-factor III methyltransferase [EC:2.1.1.131 2.1.1.272]
D CLM_1098 cobM; precorrin-4 C(11)-methyltransferase K05936 cobM; precorrin-4/cobalt-precorrin-4 C11-methyltransferase [EC:2.1.1.133 2.1.1.271]
D CLM_1099 cbiG; cobalamin biosynthesis protein CbiG K02189 cbiG; cobalt-precorrin 5A hydrolase [EC:3.7.1.12]
D CLM_1101 cobK; precorrin-6A reductase K05895 cobK-cbiJ; precorrin-6A/cobalt-precorrin-6A reductase [EC:1.3.1.54 1.3.1.106]
D CLM_1086 cbiD; cobalamin biosynthesis protein CbiD K02188 cbiD; cobalt-precorrin-5B (C1)-methyltransferase [EC:2.1.1.195]
D CLM_1090 cbiT; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit K02191 cbiT; cobalt-precorrin-6B (C15)-methyltransferase [EC:2.1.1.196]
D CLM_1087 cbiE; precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit K03399 cbiE; cobalt-precorrin-7 (C5)-methyltransferase [EC:2.1.1.289]
D CLM_1073 cobH; precorrin-8X methylmutase K06042 cobH-cbiC; precorrin-8X/cobalt-precorrin-8 methylmutase [EC:5.4.99.61 5.4.99.60]
D CLM_1072 cobB; cobyrinic acid a,c-diamide synthase K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11]
D CLM_1105 cobO; cob(I)yrinic acid a,c-diamide adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D CLM_1061 cobQ; cobyric acid synthase CobQ K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10]
D CLM_1062 cobD; cobalamin biosynthesis protein CobD K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10]
D CLM_1056 bifunctional adenosylcobalamin biosynthesis protein CobU K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62]
D CLM_0963 cobS; cobalamin 5'-phosphate synthase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26]
D CLM_0961 cobC; alpha-ribazole phosphatase K02226 cobC; alpha-ribazole phosphatase [EC:3.1.3.73]
D CLM_1104 putative kinase K16651 pduX; L-threonine kinase [EC:2.7.1.177]
D CLM_1063 aminotransferase family protein K04720 cobD; threonine-phosphate decarboxylase [EC:4.1.1.81]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:cby00130]
D CLM_0992 flavodoxin-like fold domain protein K00355 NQO1; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:cby00900]
D CLM_2098 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D CLM_2719 dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D CLM_3975 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D CLM_0164 ispE; 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D CLM_0110 ispF; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D CLM_2717 gcpE; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D CLM_1964 4-hydroxy-3-methylbut-2-enyl diphosphate reductase / ribosomal protein S1 homolog K02945 RP-S1; small subunit ribosomal protein S1
D CLM_3612 thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D CLM_2100 ispA; geranyltranstransferase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D CLM_2724 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D CLM_1503 undecaprenyl pyrophosphate synthetase homolog K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
D CLM_1257 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00907 Pinene, camphor and geraniol degradation
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D CLM_3856 transketolase, pyridine binding subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D CLM_3857 transketolase, thiamine diphosphate binding subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:cby00523]
D CLM_3084 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D CLM_2271 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D CLM_3085 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D CLM_2272 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
C 01055 Biosynthesis of vancomycin group antibiotics
D CLM_3085 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D CLM_2272 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
D CLM_0798 beta-lactamase K17836 penP; beta-lactamase class A [EC:3.5.2.6]
C 00332 Carbapenem biosynthesis
C 00261 Monobactam biosynthesis [PATH:cby00261]
D CLM_2702 dapG; aspartokinase I K00928 lysC; aspartate kinase [EC:2.7.2.4]
D CLM_1881 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D CLM_3781 lysC; aspartokinase II K00928 lysC; aspartate kinase [EC:2.7.2.4]
D CLM_3564 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D CLM_3565 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D CLM_0942 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D CLM_3566 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:cby00521]
D CLM_1845 putative glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D CLM_3521 phosphoglucomutase/phosphomannomutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D CLM_4124 phosphoglucomutase/phosphomannomutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D CLM_3084 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D CLM_2271 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D CLM_3085 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D CLM_2272 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D CLM_1845 putative glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis [PATH:cby00525]
D CLM_3084 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D CLM_2271 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D CLM_3085 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D CLM_2272 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:cby00401]
D CLM_2691 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CLM_1961 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CLM_1169 pyridoxal-phosphate-dependent aminotransferase family K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D CLM_1812 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D CLM_2382 phenazine biosynthesis protein, PhzF family K06998 phzF; trans-2,3-dihydro-3-hydroxyanthranilate isomerase [EC:5.3.3.17]
C 00333 Prodigiosin biosynthesis
D CLM_4093 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D CLM_0594 oxidoreductase, short chain dehydrogenase/reductase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CLM_4092 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D CLM_4095 acpP; acyl carrier protein K02078 acpP; acyl carrier protein
D CLM_2749 acpP; acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites
D CLM_0216 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
C 00997 Biosynthesis of various other secondary metabolites
D CLM_2191 alanine racemase, N-terminal domain protein K21898 orr; ornithine racemase [EC:5.1.1.12]
D CLM_2219 alanine racemase, N-terminal domain protein K21898 orr; ornithine racemase [EC:5.1.1.12]
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:cby00362]
D CLM_3613 hbd; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D CLM_3612 thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00627 Aminobenzoate degradation
D CLM_3218 CoA-transferase, A subunit K01034 atoD; acetate CoA/acetoacetate CoA-transferase alpha subunit [EC:2.8.3.8 2.8.3.9]
D CLM_3219 CoA-transferase, B subunit K01035 atoA; acetate CoA/acetoacetate CoA-transferase beta subunit [EC:2.8.3.8 2.8.3.9]
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation [PATH:cby00625]
D CLM_0413 adhE; aldehyde-alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D CLM_1257 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D CLM_0807 nifH; nitrogenase iron protein K02588 nifH; nitrogenase iron protein NifH
D CLM_1123 HAD superfamily (subfamily IA) hydrolase K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2]
D CLM_1179 HAD superfamily (subfamily IA) hydrolase, TIGR02254 K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2]
C 00361 Chlorocyclohexane and chlorobenzene degradation
D CLM_1123 HAD superfamily (subfamily IA) hydrolase K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2]
D CLM_1179 HAD superfamily (subfamily IA) hydrolase, TIGR02254 K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2]
C 00623 Toluene degradation
C 00622 Xylene degradation
C 00633 Nitrotoluene degradation [PATH:cby00633]
D CLM_1997 hupL; [Ni/Fe] hydrogenase, large subunit K06281 hyaB; hydrogenase large subunit [EC:1.12.99.6]
D CLM_1998 hupS; [Ni/Fe] hydrogenase, small subunit K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6]
D CLM_1506 carbon monoxide dehydrogenase K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4]
D CLM_2421 carbon monoxide dehydrogenase K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4]
D CLM_1507 nitrate reductase, iron-sulfur subunit K00196 cooF; anaerobic carbon-monoxide dehydrogenase iron sulfur subunit
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation
C 00791 Atrazine degradation
C 00930 Caprolactam degradation
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
C 00626 Naphthalene degradation [PATH:cby00626]
D CLM_0413 adhE; aldehyde-alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:cby03020]
D CLM_3956 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D CLM_3955 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D CLM_3919 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D CLM_2813 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
D CLM_0603 putative ATP-dependent helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:cby03010]
D CLM_1310 rpsA; ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D CLM_1964 4-hydroxy-3-methylbut-2-enyl diphosphate reductase / ribosomal protein S1 homolog K02945 RP-S1; small subunit ribosomal protein S1
D CLM_2728 rpsB; ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D CLM_3942 rpsC; ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D CLM_3920 rpsD; ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D CLM_3869 rpsD; ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D CLM_3931 rpsE; ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D CLM_4133 rpsF; ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D CLM_3952 rpsG; ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D CLM_3934 rpsH; ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D CLM_3912 rpsI; ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D CLM_3949 rpsJ; ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D CLM_3921 rpsK; ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D CLM_3953 rpsL; ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D CLM_3922 rpsM; ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D CLM_3935 rpsN; ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D CLM_2706 rpsO; ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D CLM_2741 rpsP; ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D CLM_3939 rpsQ; ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D CLM_4131 rpsR; ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D CLM_3944 rpsS; ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D CLM_3362 rpsT; ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D CLM_3348 rpsU; ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D CLM_3959 rplA; ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D CLM_3945 rplB; ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D CLM_3948 rplC; ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D CLM_3947 rplD; ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D CLM_3936 rplE; ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D CLM_3933 rplF; ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D CLM_3957 rplL; ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D CLM_4127 rplI; ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D CLM_3958 rplJ; ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D CLM_3960 rplK; ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D CLM_3913 rplM; ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D CLM_3938 rplN; ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D CLM_3929 rplO; ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D CLM_3941 rplP; ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D CLM_3918 rplQ; ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D CLM_3932 rplR; ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D CLM_2737 rplS; ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D CLM_3542 rplT; ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D CLM_3384 rplU; ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D CLM_3943 rplV; ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D CLM_3946 rplW; ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D CLM_3937 rplX; ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D CLM_3522 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 K02897 RP-L25; large subunit ribosomal protein L25
D CLM_3629 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 K02897 RP-L25; large subunit ribosomal protein L25
D CLM_3382 rpmA; ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D CLM_2798 rpmB; ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D CLM_3940 rpmC; ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D CLM_3930 rpmD; ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D CLM_0178 rpmE; ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D CLM_2751 ribosomal protein L32 family protein K02911 RP-L32; large subunit ribosomal protein L32
D CLM_3963 rpmG; ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D CLM_4153 rpmH; ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D CLM_3543 rpmI; ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D CLM_3923 rpmJ; ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D CLM_3954 ribosomal protein L7Ae family protein K07590 RP-L7A; large subunit ribosomal protein L7A
D CLM_0050 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CLM_0065 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CLM_3993 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CLM_0486 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CLM_0057 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CLM_4001 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CLM_0077 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CLM_0084 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CLM_0008 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CLM_0087 rrl; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CLM_0011 rrl; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CLM_0012 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CLM_3997 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CLM_0069 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CLM_3988 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CLM_0492 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CLM_0088 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CLM_0061 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CLM_0081 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CLM_0054 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:cby00970]
D CLM_0014 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D CLM_3994 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D CLM_0487 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D CLM_0027 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CLM_3675 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CLM_3683 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CLM_3691 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CLM_0031 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CLM_3671 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CLM_3987 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D CLM_0493 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D CLM_3986 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D CLM_3554 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D CLM_4104 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D CLM_4108 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D CLM_4113 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D CLM_0090 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D CLM_3551 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D CLM_0236 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D CLM_3680 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D CLM_3689 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D CLM_4107 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D CLM_4115 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D CLM_4110 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D CLM_0562 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D CLM_3552 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CLM_3685 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CLM_3677 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CLM_3672 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CLM_3676 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CLM_3692 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CLM_3684 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CLM_3966 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CLM_3681 tRNA-His K14226 tRNA-His; tRNA His
D CLM_3690 tRNA-His K14226 tRNA-His; tRNA His
D CLM_0488 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D CLM_3992 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D CLM_4017 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CLM_4020 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CLM_3678 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CLM_3687 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CLM_3408 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CLM_3450 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CLM_3682 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CLM_3674 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CLM_0055 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CLM_3688 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CLM_0062 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CLM_3679 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CLM_0013 tRNA-Met K14230 tRNA-Met; tRNA Met
D CLM_3995 tRNA-Met K14230 tRNA-Met; tRNA Met
D CLM_4014 tRNA-Met K14230 tRNA-Met; tRNA Met
D CLM_4018 tRNA-Met K14230 tRNA-Met; tRNA Met
D CLM_4015 tRNA-Met K14230 tRNA-Met; tRNA Met
D CLM_4016 tRNA-Met K14230 tRNA-Met; tRNA Met
D CLM_4019 tRNA-Met K14230 tRNA-Met; tRNA Met
D CLM_0071 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D CLM_3553 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D CLM_0082 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D CLM_3673 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D CLM_3693 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D CLM_4042 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D CLM_0024 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CLM_0026 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CLM_0023 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CLM_0025 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CLM_0035 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CLM_0210 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D CLM_4103 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D CLM_0213 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D CLM_3965 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D CLM_3751 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D CLM_0211 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D CLM_0214 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D CLM_0212 tRNA-Val K14237 tRNA-Val; tRNA Val
D CLM_4106 tRNA-Val K14237 tRNA-Val; tRNA Val
D CLM_4114 tRNA-Val K14237 tRNA-Val; tRNA Val
D CLM_4109 tRNA-Val K14237 tRNA-Val; tRNA Val
D CLM_3555 tRNA-Val K14237 tRNA-Val; tRNA Val
D CLM_3369 tRNA-Sec K14238 tRNA-Sec; tRNA Sec
D CLM_1252 gltX; glutamate--tRNA ligase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]
D CLM_3700 gatA; glutamyl-tRNA(Gln) amidotransferase, A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D CLM_3699 gatB; glutamyl-tRNA(Gln) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D CLM_3701 gatC; glutamyl-tRNA(Gln) amidotransferase, C subunit K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D CLM_2871 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D CLM_3459 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D CLM_1174 aspS; aspartate--tRNA ligase K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23]
D CLM_0706 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D CLM_4003 glyS; glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D CLM_3546 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D CLM_0602 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D CLM_0022 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D CLM_3371 selA; L-seryl-tRNA selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D CLM_3972 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D CLM_0119 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D CLM_2809 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D CLM_3576 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D CLM_0234 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D CLM_0142 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D CLM_4004 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D CLM_1232 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D CLM_3974 putative prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D CLM_3789 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D CLM_3460 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D CLM_3538 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D CLM_3537 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D CLM_3759 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D CLM_1358 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D CLM_3767 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:cby03060]
D CLM_3928 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D CLM_3962 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D CLM_0281 secG; preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D CLM_3468 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D CLM_3467 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D CLM_3472 yajC; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D CLM_4150 oxaA; membrane protein OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase
D CLM_0221 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D CLM_2742 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D CLM_0036 srpB; Bacterial signal recognition particle RNA K01983 ffs; SRP RNA
D CLM_2744 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D CLM_0907 putative arsenite-transporting ATPase ArsA K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D CLM_0685 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D CLM_2736 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D CLM_1712 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:cby04122]
D CLM_2875 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D CLM_1333 aminotransferase, class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D CLM_0943 rhodanese domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D CLM_2978 putative thiosulfate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D CLM_3301 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D CLM_1336 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D CLM_2157 moaA; molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D CLM_2152 moaD; molybdopterin converting factor subunit 1 K03636 moaD; sulfur-carrier protein
D CLM_1297 putative thiosulfate sulfurtransferase K21028 ynjE; molybdopterin synthase sulfurtransferase [EC:2.8.1.11]
D CLM_2151 moeB; molybdopterin biosynthesis protein MoeB K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]
D CLM_2156 moaC; molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D CLM_2160 mog; molybdopterin biosynthesis enzyme Mog K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
C 03050 Proteasome
C 03018 RNA degradation [PATH:cby03018]
D CLM_0280 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D CLM_2705 pnpA; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D CLM_0749 rhlE; ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D CLM_0282 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D CLM_3166 ATP-dependent RNA helicase, DEAD/DEAH box family K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D CLM_1938 deaD; ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D CLM_1936 ATP-dependent RNA helicase, DEAD/DEAH box family K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D CLM_2228 ATP-dependent RNA helicase, DEAD/DEAH box family K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D CLM_1150 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D CLM_0177 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D CLM_2696 HDIG/HD/KH domain protein K18682 rny; ribonucrease Y [EC:3.1.-.-]
D CLM_2866 RNA-metabolizing metallo-beta-lactamase family protein K12574 rnj; ribonuclease J [EC:3.1.-.-]
D CLM_1453 RNA-metabolising metallo-beta-lactamase K12574 rnj; ribonuclease J [EC:3.1.-.-]
D CLM_3835 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D CLM_3354 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D CLM_3732 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D CLM_1954 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:cby03030]
D CLM_0308 exonuclease, DNA polymerase III, epsilon subunit family K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CLM_3836 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D CLM_2716 polC; DNA polymerase III, alpha subunit, Gram-positive type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D CLM_0037 dnaX; DNA polymerase III, gamma and tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D CLM_0099 putative DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D CLM_3363 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D CLM_0002 dnaN; DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D CLM_4125 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D CLM_3333 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D CLM_4132 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D CLM_0463 single-strand binding domain protein K03111 ssb; single-strand DNA-binding protein
D CLM_0472 rnhA; ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D CLM_2734 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D CLM_3411 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D CLM_3704 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:cby03410]
D CLM_3737 putative 8-oxoguanine DNA glycosylase K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
D CLM_0259 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D CLM_1424 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
D CLM_0746 conserved domain protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D CLM_0056 uracil-DNA glycosylase family protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D CLM_0117 udgA; uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D CLM_1718 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D CLM_3131 AP endonuclease, family 2 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D CLM_3411 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D CLM_3130 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D CLM_3704 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:cby03420]
D CLM_4031 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D CLM_3848 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
D CLM_3849 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
D CLM_3842 uvrC; excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C
D CLM_3616 GIY-YIG domain protein K03703 uvrC; excinuclease ABC subunit C
D CLM_1495 helicase, UvrD/REP/exonuclease family protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CLM_3786 conserved hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CLM_3705 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CLM_1591 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CLM_0852 conserved hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CLM_3300 putative helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CLM_3411 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D CLM_3704 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D CLM_0603 putative ATP-dependent helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
C 03430 Mismatch repair [PATH:cby03430]
D CLM_1957 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D CLM_3528 MutS2 family protein K07456 mutS2; DNA mismatch repair protein MutS2
D CLM_0739 MutS domain protein K07456 mutS2; DNA mismatch repair protein MutS2
D CLM_1956 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D CLM_1495 helicase, UvrD/REP/exonuclease family protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CLM_3786 conserved hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CLM_3705 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CLM_1591 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CLM_0852 conserved hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CLM_3300 putative helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CLM_2102 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D CLM_2101 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D CLM_3130 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D CLM_4132 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D CLM_0463 single-strand binding domain protein K03111 ssb; single-strand DNA-binding protein
D CLM_3836 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D CLM_2716 polC; DNA polymerase III, alpha subunit, Gram-positive type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D CLM_0002 dnaN; DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D CLM_0037 dnaX; DNA polymerase III, gamma and tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D CLM_3363 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D CLM_0099 putative DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D CLM_0308 exonuclease, DNA polymerase III, epsilon subunit family K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CLM_3704 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D CLM_2538 D12 class N6 adenine-specific DNA methyltransferase superfamily K06223 dam; DNA adenine methylase [EC:2.1.1.72]
C 03440 Homologous recombination [PATH:cby03440]
D CLM_3130 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D CLM_4132 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D CLM_0463 single-strand binding domain protein K03111 ssb; single-strand DNA-binding protein
D CLM_0004 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
D CLM_0039 recR; recombination protein RecR K06187 recR; recombination protein RecR
D CLM_2697 recA; recA protein K03553 recA; recombination protein RecA
D CLM_3411 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D CLM_3476 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D CLM_3475 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D CLM_2795 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D CLM_0217 helicase, RecD/TraA family K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D CLM_3836 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D CLM_2716 polC; DNA polymerase III, alpha subunit, Gram-positive type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D CLM_0002 dnaN; DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D CLM_0037 dnaX; DNA polymerase III, gamma and tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D CLM_3363 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D CLM_0099 putative DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D CLM_0308 exonuclease, DNA polymerase III, epsilon subunit family K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CLM_2811 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus and Lyssavirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:cby02010]
D CLM_2163 tungstate ABC transporter, tungstate-binding protein K05772 tupA; tungstate transport system substrate-binding protein
D CLM_2162 tupB; tungstate ABC transporter, permease protein K05773 tupB; tungstate transport system permease protein
D CLM_2161 tupC; tungstate ABC transporter, ATP-binding protein K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6]
D CLM_1721 modA; molybdate ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D CLM_1722 modB; molybdate ABC transporter, permease protein K02018 modB; molybdate transport system permease protein
D CLM_1723 putative molybdate ABC transporter, ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D CLM_1305 ABC transporter, substrate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D CLM_1306 ABC transporter, permease protein K02011 afuB; iron(III) transport system permease protein
D CLM_1307 ABC transporter, ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D CLM_0667 potCD; spermidine/putrescine transport system permease protein PotC/spermidine/putrescine-binding periplasmic protein PotD K11069 potD; spermidine/putrescine transport system substrate-binding protein
D CLM_0666 potB; spermidine/putrescine ABC transporter, permease protein PotB K11071 potB; spermidine/putrescine transport system permease protein
D CLM_0665 potA; spermidine/putrescine ABC transporter, ATP-binding protein K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D CLM_1878 glycine betaine/L-proline ABC transporter, permease/glycine betaine/L-proline-binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein
D CLM_1877 glycine betaine/L-proline ABC transporter, ATP-binding protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D CLM_1750 carbohydrate uptake ABC transporter, CUT1 family, ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D CLM_0269 lipoprotein, bmp family K07335 bmpA; basic membrane protein A and related proteins
D CLM_0271 sugar ABC transporter, permease protein K23535 nupB; general nucleoside transport system permease protein
D CLM_0272 sugar ABC transporter, permease protein K23536 nupC; general nucleoside transport system permease protein
D CLM_0270 sugar ABC transporter, ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein
D CLM_0454 phosphate uptake ABC transporter, PhoT family, phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D CLM_2830 pstS; phosphate ABC transporter, phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D CLM_0455 phosphate uptake ABC transporter, PhoT family, permease protein K02037 pstC; phosphate transport system permease protein
D CLM_2829 pstC; phosphate ABC transporter, permease protein PstC K02037 pstC; phosphate transport system permease protein
D CLM_0456 phosphate uptake ABC transporter, PhoT family, permease protein K02038 pstA; phosphate transport system permease protein
D CLM_2828 pstA; phosphate ABC transporter, permease protein PstA K02038 pstA; phosphate transport system permease protein
D CLM_2827 pstB; phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D CLM_0457 phosphate uptake ABC transporter, PhoT family, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D CLM_1332 polar amino acid uptake ABC transporter, PAAT family, amino acid-binding protein K16961 yxeM; putative S-methylcysteine transport system substrate-binding protein
D CLM_1577 amino acid ABC transporter, amino acid-binding protein K16961 yxeM; putative S-methylcysteine transport system substrate-binding protein
D CLM_1331 amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family K16962 yxeN; putative S-methylcysteine transport system permease protein
D CLM_1578 amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family K16962 yxeN; putative S-methylcysteine transport system permease protein
D CLM_1579 polar amino acid uptake family ABC transporter, PAAT family, ATP-binding protein K16963 yxeO; putative S-methylcysteine transport system ATP-binding protein
D CLM_2235 polar amino acid uptake ABC transporter, PAAT family, amino acid-binding protein K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein
D CLM_2233 polar amino acid uptake family ABC transporter, PAAT family, ATP-binding protein K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1]
D CLM_0536 putative high-affinity branched-chain amino acid ABC transporter, amino acid-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D CLM_0537 high-affinity branched-chain amino acid ABC transporter, permease protein K01997 livH; branched-chain amino acid transport system permease protein
D CLM_0538 putative high-affinity branched-chain amino acid ABC transporter, permease protein K01998 livM; branched-chain amino acid transport system permease protein
D CLM_0539 putative high-affinity branched chain amino acid ABC transporter, ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D CLM_0540 putative high-affinity branched chain amino acid ABC transporter, ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D CLM_1245 lipoprotein, NLPA family K02073 metQ; D-methionine transport system substrate-binding protein
D CLM_1246 lipoprotein, NLPA family K02073 metQ; D-methionine transport system substrate-binding protein
D CLM_1737 lipoprotein, NLPA family K02073 metQ; D-methionine transport system substrate-binding protein
D CLM_1244 methionine ABC transporter, MUT family, permease protein K02072 metI; D-methionine transport system permease protein
D CLM_1736 methionine ABC transporter, MUT family, permease protein K02072 metI; D-methionine transport system permease protein
D CLM_1243 methionine ABC transporter, MUT family, ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein
D CLM_1735 methionine ABC transporter, MUT family, ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein
D CLM_3563 oligopeptide/dipeptide ABC transporter, oligopeptide/dipeptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D CLM_3698 bacterial extracellular solute-binding protein, family 5 K15580 oppA; oligopeptide transport system substrate-binding protein
D CLM_3562 oligopeptide/dipeptide ABC transporter, permease protein K15581 oppB; oligopeptide transport system permease protein
D CLM_3561 oligopeptide/dipeptide ABC transporter, permease protein K15582 oppC; oligopeptide transport system permease protein
D CLM_3560 oligopeptide/dipeptide ABC transporter, ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein
D CLM_3559 oligopeptide/dipeptide ABC transporter, ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D CLM_1538 manganese/zinc/iron chelate uptake ABC transporter, Mzt family, substrate-binding protein K09815 znuA; zinc transport system substrate-binding protein
D CLM_1536 manganese/zinc/iron chelate uptake ABC transporter, Mzt family, permease protein K09816 znuB; zinc transport system permease protein
D CLM_1537 manganese/zinc/iron chelate uptake ABC transporter, Mzt family, ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D CLM_1065 cbiN; cobalt transport protein K02009 cbiN; cobalt/nickel transport protein
D CLM_1064 cbiM; cobalamin biosynthesis protein CbiM K02007 cbiM; cobalt/nickel transport system permease protein
D CLM_1066 cbiQ; cobalt ABC transporter, permease protein CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein
D CLM_2469 BioY family protein K03523 bioY; biotin transport system substrate-specific component
D CLM_1052 BioY family protein K03523 bioY; biotin transport system substrate-specific component
D CLM_2188 putative ABC transporter, permease protein K16785 ecfT; energy-coupling factor transport system permease protein
D CLM_3915 cobalt transport permease, CbiQ family K16785 ecfT; energy-coupling factor transport system permease protein
D CLM_3917 putative cobalt ABC transporter, ATP-binding protein K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D CLM_3916 putative cobalt ABC transporter, ATP-binding protein K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D CLM_2444 putative sodium extrusion protein NatB K09696 natB; sodium transport system permease protein
D CLM_2445 putative sodium extrusion ATP-binding protein NatA K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4]
D CLM_2590 putative membrane protein K19310 bcrB; bacitracin transport system permease protein
D CLM_2591 antibiotic ABC transporter, ATP-binding protein K19309 bcrA; bacitracin transport system ATP-binding protein
D CLM_1567 peptide ABC transporter, Pep4E family, permease protein K11632 bceB; bacitracin transport system permease protein
D CLM_1566 peptide ABC transporter, Pep4E family, ATP-binding protein K11631 bceA; bacitracin transport system ATP-binding protein
D CLM_1824 putative lantibiotic ABC transporter, permease protein K20491 nisE; lantibiotic transport system permease protein
D CLM_1825 putative lantibiotic ABC transporter, permease protein K20492 nisG; lantibiotic transport system permease protein
D CLM_1823 antibiotic ABC transporter, ATP-binding protein K20490 nisF; lantibiotic transport system ATP-binding protein
D CLM_3852 putative cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D CLM_3853 putative cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D CLM_3154 ABC transporter, permease protein K16919 ytrC_D; acetoin utilization transport system permease protein
D CLM_3155 ABC transporter, ATP-binding protein K16921 ytrB; acetoin utilization transport system ATP-binding protein
D CLM_2586 putative ABC transporter, ATP-binding/permease protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D CLM_1206 ABC transporter ATP-binding/permease protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D CLM_1842 ABC transporter ATP-binding/permease protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D CLM_1207 ABC transport ATP-binding/permease protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D CLM_1843 ABC transporter ATP-binding/permease protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D CLM_2585 putative ABC transporter, ATP-binding/permease protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D CLM_2171 ABC transporter, ATP-binding/permease protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D CLM_2149 putative ABC transporter, ATP-binding/permease protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D CLM_2170 putative ABC transporter, ATP-binding/permease protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D CLM_2148 ABC transporter, ATP-binding/permease protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D CLM_0655 ABC transporter, ATP-binding protein K18231 msr; macrolide transport system ATP-binding/permease protein
D CLM_3237 drug resistance ABC transporter, RA2 family, ATP-binding protein K19350 lsa; lincosamide and streptogramin A transport system ATP-binding/permease protein
C 02060 Phosphotransferase system (PTS) [PATH:cby02060]
D CLM_3905 ptsI; phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D CLM_2690 ptsH; phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr
D CLM_1502 ptsG; PTS system, glucose-specific, IIABC component K20118 ptsG; glucose PTS system EIICBA or EIICB component [EC:2.7.1.199]
D CLM_3120 PTS system, glucose family, IIABC component K20118 ptsG; glucose PTS system EIICBA or EIICB component [EC:2.7.1.199]
D CLM_0337 PTS system, glucose/glucoside family, IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D CLM_3201 ptbA; PTS system, glucose subfamily, IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D CLM_0348 PTS system, glucose family, IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D CLM_0330 PTS system, glucose family, EIIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D CLM_3202 nagE; PTS system, N-acetylglucosamine-specific, IIBC component K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D CLM_0327 PTS system, maltose/glucose-specfic, IIBC component K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]
D CLM_0346 PTS system, glucose/maltose-specfic, IIBC component K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]
D CLM_1847 PTS system, glucose/glucoside family, IIBC component K20108 malT; maltose PTS system EIICB or EIICBA component [EC:2.7.1.208]
D CLM_1521 PTS system, IIBC components K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211]
D CLM_1020 PTS system, beta-glucoside-specific, IIABC component K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D CLM_0768 PTS system, beta-glucoside-specific, IIABC component K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D CLM_0335 PTS system, glucose/glucoside family, IIBC component K02750 glvC; alpha-glucoside PTS system EIICB component [EC:2.7.1.208 2.7.1.-]
D CLM_2204 treP; PTS system, trehalose-specific IIBC component K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201]
D CLM_3804 PTS system, lactose/cellobiose-specific family, IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D CLM_3805 PTS system, lactose/cellobiose-specific family, IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D CLM_3807 PTS system, lactose/cellobiose family, IIC component K02761 celB; cellobiose PTS system EIIC component
D CLM_3215 PTS system sorbose-specific iic component K02795 manY; mannose PTS system EIIC component
D CLM_3216 PTS system, mannose/fructose/sorbose family, IID component K02796 manZ; mannose PTS system EIID component
D CLM_3880 PTS system, glucitol/sorbitol-specific, IIA component K02781 srlB; glucitol/sorbitol PTS system EIIA component [EC:2.7.1.198]
D CLM_3881 PTS system, glucitol/sorbitol-specific, IIBC component K02782 srlE; glucitol/sorbitol PTS system EIIB component [EC:2.7.1.198]
D CLM_3882 PTS system, glucitol/sorbitol-specific, IIC component K02783 srlA; glucitol/sorbitol PTS system EIIC component
D CLM_2364 putative PTS system, L-ascorbate family, IIA component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D CLM_2363 putative PTS system, L-Ascorbate family, IIB component K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D CLM_2362 putative PTS system, L-ascorbate family, IIC component K03475 ulaA; ascorbate PTS system EIIC component
D CLM_1923 pfkB; 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
C 03070 Bacterial secretion system [PATH:cby03070]
D CLM_3468 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D CLM_3467 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D CLM_3962 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D CLM_0281 secG; preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D CLM_3928 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D CLM_3472 yajC; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D CLM_4150 oxaA; membrane protein OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase
D CLM_0221 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D CLM_2744 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D CLM_2742 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:cby02020]
D CLM_2831 sensor histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D CLM_2832 putative phosphate regulon DNA-binding response regulator K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D CLM_0420 DNA-binding response regulator K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D CLM_0454 phosphate uptake ABC transporter, PhoT family, phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D CLM_2830 pstS; phosphate ABC transporter, phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D CLM_0354 sensor histidine kinase K07650 cssS; two-component system, OmpR family, sensor histidine kinase CssS [EC:2.7.13.3]
D CLM_0353 DNA-binding response regulator K07770 cssR; two-component system, OmpR family, response regulator CssR
D CLM_4033 putative protease K04771 degP; serine protease Do [EC:3.4.21.107]
D CLM_3032 flagellin K02406 fliC; flagellin
D CLM_3060 fliC; flagellin K02406 fliC; flagellin
D CLM_3096 flagellin K02406 fliC; flagellin
D CLM_3097 flagellin K02406 fliC; flagellin
D CLM_3007 fliA; RNA polymerase sigma factor for flagellar operon FliA K02405 fliA; RNA polymerase sigma factor FliA
D CLM_3018 motA; chemotaxis MotA protein K02556 motA; chemotaxis protein MotA
D CLM_2432 motA; chemotaxis protein MotA K02556 motA; chemotaxis protein MotA
D CLM_1116 DNA-binding response regulator K07668 vicR; two-component system, OmpR family, response regulator VicR
D CLM_0001 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D CLM_1566 peptide ABC transporter, Pep4E family, ATP-binding protein K11631 bceA; bacitracin transport system ATP-binding protein
D CLM_1567 peptide ABC transporter, Pep4E family, permease protein K11632 bceB; bacitracin transport system permease protein
D CLM_1570 sensor histidine kinase K11633 yxdK; two-component system, OmpR family, sensor histidine kinase YxdK [EC:2.7.13.3]
D CLM_0387 sensor histidine kinase K11633 yxdK; two-component system, OmpR family, sensor histidine kinase YxdK [EC:2.7.13.3]
D CLM_1569 DNA-binding response regulator K11634 yxdJ; two-component system, OmpR family, response regulator YxdJ
D CLM_0386 DNA-binding response regulator K11634 yxdJ; two-component system, OmpR family, response regulator YxdJ
D CLM_0389 peptide ABC transporter, Pep4E family, ATP-binding protein K11635 yxdL; putative ABC transport system ATP-binding protein
D CLM_1571 peptide ABC transporter, Pep4E family, ATP-binding protein K11635 yxdL; putative ABC transport system ATP-binding protein
D CLM_0390 peptide ABC transporter, Pep4E family, permease protein K11636 yxdM; putative ABC transport system permease protein
D CLM_1572 peptide ABC transporter, Pep4E family, permease protein K11636 yxdM; putative ABC transport system permease protein
D CLM_2185 sensor histidine kinase K18345 vanSB; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3]
D CLM_2186 DNA-binding response regulator K18344 vanRB; two-component system, OmpR family, response regulator VanR
D CLM_0433 DNA-binding response regulator K18349 vanRC; two-component system, OmpR family, response regulator VanR
D CLM_1189 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D CLM_0717 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D CLM_2622 sensor histidine kinase K18940 arlS; two-component system, OmpR family, sensor histidine kinase ArlS [EC:2.7.13.3]
D CLM_2623 DNA-binding response regulator K18941 arlR; two-component system, OmpR family, response regulator ArlR
D CLM_2142 sensor histidine kinase K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3]
D CLM_1827 putative lantibiotic biosynthesis sensor histidine kinase K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3]
D CLM_1826 putative lantibiotic biosynthesis regulatory protein K20488 nisR; two-component system, OmpR family, lantibiotic biosynthesis response regulator NisR/SpaR
D CLM_2143 DNA-binding response regulator K20488 nisR; two-component system, OmpR family, lantibiotic biosynthesis response regulator NisR/SpaR
D CLM_3771 nisin leader peptide-processing serine protease NisP K20486 nisP; lantibiotic leader peptide-processing serine protease [EC:3.4.21.-]
D CLM_1823 antibiotic ABC transporter, ATP-binding protein K20490 nisF; lantibiotic transport system ATP-binding protein
D CLM_1824 putative lantibiotic ABC transporter, permease protein K20491 nisE; lantibiotic transport system permease protein
D CLM_1825 putative lantibiotic ABC transporter, permease protein K20492 nisG; lantibiotic transport system permease protein
D CLM_2088 spo0A; sporulation transcription factor Spo0A K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A
D CLM_0260 malate dehydrogenase (oxaloacetate-decarboxylating) K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D CLM_2445 putative sodium extrusion ATP-binding protein NatA K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4]
D CLM_2444 putative sodium extrusion protein NatB K09696 natB; sodium transport system permease protein
D CLM_0399 putative accessory gene regulator protein B K07813 agrB; accessory gene regulator B
D CLM_0406 putative accessory gene regulator protein B K07813 agrB; accessory gene regulator B
D CLM_0400 putative lipoprotein K07800 agrD; AgrD protein
D CLM_0407 hypothetical protein K07800 agrD; AgrD protein
D CLM_1340 sensor histidine kinase K07706 agrC; two-component system, LytTR family, sensor histidine kinase AgrC [EC:2.7.13.3]
D CLM_1338 DNA-binding response regulator, LytTr family K07707 agrA; two-component system, LytTR family, response regulator AgrA
D CLM_3103 csrA; carbon storage regulator K03563 csrA; carbon storage regulator
D CLM_4056 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CLM_3218 CoA-transferase, A subunit K01034 atoD; acetate CoA/acetoacetate CoA-transferase alpha subunit [EC:2.8.3.8 2.8.3.9]
D CLM_3219 CoA-transferase, B subunit K01035 atoA; acetate CoA/acetoacetate CoA-transferase beta subunit [EC:2.8.3.8 2.8.3.9]
D CLM_3612 thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D CLM_0274 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D CLM_2124 putative type IV pilin K02650 pilA; type IV pilus assembly protein PilA
D CLM_1998 hupS; [Ni/Fe] hydrogenase, small subunit K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6]
D CLM_1997 hupL; [Ni/Fe] hydrogenase, large subunit K06281 hyaB; hydrogenase large subunit [EC:1.12.99.6]
D CLM_3115 cheR; chemotaxis protein methyltransferase CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D CLM_3175 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLM_0654 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLM_0810 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLM_0857 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLM_1529 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLM_1932 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLM_0469 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLM_0519 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLM_1761 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLM_1800 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLM_2136 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLM_3169 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLM_3191 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLM_3624 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLM_1905 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLM_2217 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLM_3111 putative chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D CLM_3118 cheW; chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D CLM_3114 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D CLM_3112 cheY; chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D CLM_1153 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D CLM_3116 cheB; protein-glutamate methylesterase CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D CLM_1935 cheV; chemotaxis protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D CLM_1512 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D CLM_1106 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D CLM_0722 sensor histidine kinase K07717 glnK; two-component system, sensor histidine kinase GlnK [EC:2.7.13.3]
D CLM_0721 response regulator K07719 glnL; two-component system, response regulator GlnL
D CLM_3173 glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D CLM_0192 mnaA; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D CLM_3108 regulator of flagellin synthesis FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:cby02024]
D CLM_0867 luxS; S-ribosylhomocysteinase LuxS K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D CLM_1954 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein
D CLM_2382 phenazine biosynthesis protein, PhzF family K06998 phzF; trans-2,3-dihydro-3-hydroxyanthranilate isomerase [EC:5.3.3.17]
D CLM_2134 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D CLM_2768 amino acid permease family protein K20265 gadC; glutamate:GABA antiporter
D CLM_0411 amino acid permease family protein K20265 gadC; glutamate:GABA antiporter
D CLM_1264 putative ABC transporter, solute-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D CLM_1267 ABC transporter, permease protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D CLM_1266 ABC transporter, permease protein K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D CLM_1268 ABC transporter, ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D CLM_0536 putative high-affinity branched-chain amino acid ABC transporter, amino acid-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D CLM_0537 high-affinity branched-chain amino acid ABC transporter, permease protein K01997 livH; branched-chain amino acid transport system permease protein
D CLM_0538 putative high-affinity branched-chain amino acid ABC transporter, permease protein K01998 livM; branched-chain amino acid transport system permease protein
D CLM_0539 putative high-affinity branched chain amino acid ABC transporter, ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D CLM_0540 putative high-affinity branched chain amino acid ABC transporter, ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D CLM_1512 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D CLM_1106 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D CLM_3262 ribD; riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D CLM_1005 putative membrane protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D CLM_4081 putative membrane protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D CLM_3826 putative membrane protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D CLM_1785 conserved hypothetical protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D CLM_0400 putative lipoprotein K07800 agrD; AgrD protein
D CLM_0407 hypothetical protein K07800 agrD; AgrD protein
D CLM_0399 putative accessory gene regulator protein B K07813 agrB; accessory gene regulator B
D CLM_0406 putative accessory gene regulator protein B K07813 agrB; accessory gene regulator B
D CLM_1340 sensor histidine kinase K07706 agrC; two-component system, LytTR family, sensor histidine kinase AgrC [EC:2.7.13.3]
D CLM_1338 DNA-binding response regulator, LytTr family K07707 agrA; two-component system, LytTR family, response regulator AgrA
D CLM_3563 oligopeptide/dipeptide ABC transporter, oligopeptide/dipeptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D CLM_3698 bacterial extracellular solute-binding protein, family 5 K15580 oppA; oligopeptide transport system substrate-binding protein
D CLM_3562 oligopeptide/dipeptide ABC transporter, permease protein K15581 oppB; oligopeptide transport system permease protein
D CLM_3561 oligopeptide/dipeptide ABC transporter, permease protein K15582 oppC; oligopeptide transport system permease protein
D CLM_3560 oligopeptide/dipeptide ABC transporter, ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein
D CLM_3559 oligopeptide/dipeptide ABC transporter, ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D CLM_1912 peptide/opine/nickel uptake ABC transporter, PepT family, substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D CLM_1383 putative oligopeptide ABC transporter, oligopeptide-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D CLM_0956 methyl-accepting chemotaxis protein/bacterial extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D CLM_1530 peptide/opine/nickel uptake ABC transporter, PepT family, substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D CLM_1913 peptide/opine/nickel uptake ABC transporter, PepT family, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D CLM_1382 putative oligopeptide ABC transporter, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D CLM_1531 peptide/opine/nickel uptake ABC transporter, PepT family, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D CLM_1914 peptide/opine/nickel uptake ABC transporter, PepT family, permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D CLM_1381 putative oligopeptide ABC transporter, permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D CLM_1532 peptide/opine/nickel uptake ABC transporter, PepT family, permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D CLM_1533 peptide/opine/nickel uptake ABC transporter, PepT family K02031 ddpD; peptide/nickel transport system ATP-binding protein
D CLM_1915 ABC transporter, ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D CLM_4150 oxaA; membrane protein OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase
D CLM_3962 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D CLM_0281 secG; preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D CLM_3928 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D CLM_3472 yajC; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D CLM_0221 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D CLM_2744 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D CLM_2742 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D CLM_2088 spo0A; sporulation transcription factor Spo0A K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A
D CLM_2998 putative phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3]
D CLM_3771 nisin leader peptide-processing serine protease NisP K20486 nisP; lantibiotic leader peptide-processing serine protease [EC:3.4.21.-]
D CLM_2142 sensor histidine kinase K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3]
D CLM_1827 putative lantibiotic biosynthesis sensor histidine kinase K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3]
D CLM_1826 putative lantibiotic biosynthesis regulatory protein K20488 nisR; two-component system, OmpR family, lantibiotic biosynthesis response regulator NisR/SpaR
D CLM_2143 DNA-binding response regulator K20488 nisR; two-component system, OmpR family, lantibiotic biosynthesis response regulator NisR/SpaR
D CLM_1823 antibiotic ABC transporter, ATP-binding protein K20490 nisF; lantibiotic transport system ATP-binding protein
D CLM_1824 putative lantibiotic ABC transporter, permease protein K20491 nisE; lantibiotic transport system permease protein
D CLM_1825 putative lantibiotic ABC transporter, permease protein K20492 nisG; lantibiotic transport system permease protein
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:cby02030]
D CLM_3175 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLM_0654 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLM_0810 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLM_0857 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLM_1529 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLM_1932 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLM_0469 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLM_0519 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLM_1761 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLM_1800 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLM_2136 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLM_3169 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLM_3191 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLM_3624 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLM_1905 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLM_2217 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLM_3114 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D CLM_3111 putative chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D CLM_3118 cheW; chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D CLM_3112 cheY; chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D CLM_1153 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D CLM_3113 cheC; chemotaxis protein CheC K03410 cheC; chemotaxis protein CheC
D CLM_1944 cheX; chemotaxis protein CheX K03409 cheX; chemotaxis protein CheX
D CLM_3116 cheB; protein-glutamate methylesterase CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D CLM_1935 cheV; chemotaxis protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D CLM_3117 cheD; chemotaxis protein CheD K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44]
D CLM_3115 cheR; chemotaxis protein methyltransferase CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D CLM_3027 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D CLM_3110 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D CLM_3109 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D CLM_3018 motA; chemotaxis MotA protein K02556 motA; chemotaxis protein MotA
D CLM_2432 motA; chemotaxis protein MotA K02556 motA; chemotaxis protein MotA
D CLM_3017 motB; chemotaxis motB protein K02557 motB; chemotaxis protein MotB
D CLM_2431 motB; chemotaxis MotB protein K02557 motB; chemotaxis protein MotB
C 02040 Flagellar assembly [PATH:cby02040]
D CLM_3029 fliE; flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D CLM_3028 fliF; flagellar M-ring protein fliF K02409 fliF; flagellar M-ring protein FliF
D CLM_3027 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D CLM_3026 fliH; flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D CLM_3025 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D CLM_3024 fliJ; flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ
D CLM_3023 fliK; flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK
D CLM_3016 fliL; flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL
D CLM_3110 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D CLM_3109 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D CLM_3015 flagellar biosynthesis domain protein K02418 fliO; flagellar protein FliO/FliZ
D CLM_3014 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D CLM_3013 fliQ; flagellar biosynthesis protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D CLM_3011 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D CLM_3012 flagellar biosynthetic protein FliR/FlhB K13820 fliR-flhB; flagellar biosynthesis protein FliR/FlhB
D CLM_3031 flgB; flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D CLM_3030 flgC; flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D CLM_3022 flgD; flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D CLM_3020 flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE
D CLM_3004 flagellar basal body rod protein K02391 flgF; flagellar basal-body rod protein FlgF
D CLM_3003 flagellar basal body rod protein K02392 flgG; flagellar basal-body rod protein FlgG
D CLM_3106 flgK; flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D CLM_3105 flgL; flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL
D CLM_3032 flagellin K02406 fliC; flagellin
D CLM_3060 fliC; flagellin K02406 fliC; flagellin
D CLM_3096 flagellin K02406 fliC; flagellin
D CLM_3097 flagellin K02406 fliC; flagellin
D CLM_3099 fliD; Flagellar hook-associated protein 2 K02407 fliD; flagellar hook-associated protein 2
D CLM_3100 fliS; flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS
D CLM_3018 motA; chemotaxis MotA protein K02556 motA; chemotaxis protein MotA
D CLM_2432 motA; chemotaxis protein MotA K02556 motA; chemotaxis protein MotA
D CLM_3017 motB; chemotaxis motB protein K02557 motB; chemotaxis protein MotB
D CLM_2431 motB; chemotaxis MotB protein K02557 motB; chemotaxis protein MotB
D CLM_3108 regulator of flagellin synthesis FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
D CLM_3332 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D CLM_0274 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D CLM_3007 fliA; RNA polymerase sigma factor for flagellar operon FliA K02405 fliA; RNA polymerase sigma factor FliA
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D CLM_0280 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
D CLM_1865 putative 5-methyltetrahydrofolate--homocysteine methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:cby01501]
D CLM_3563 oligopeptide/dipeptide ABC transporter, oligopeptide/dipeptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D CLM_3698 bacterial extracellular solute-binding protein, family 5 K15580 oppA; oligopeptide transport system substrate-binding protein
D CLM_3562 oligopeptide/dipeptide ABC transporter, permease protein K15581 oppB; oligopeptide transport system permease protein
D CLM_3561 oligopeptide/dipeptide ABC transporter, permease protein K15582 oppC; oligopeptide transport system permease protein
D CLM_3560 oligopeptide/dipeptide ABC transporter, ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein
D CLM_3559 oligopeptide/dipeptide ABC transporter, ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D CLM_0800 putative beta-lactamase-inducing penicillin-binding protein K02172 blaR1; bla regulator protein blaR1
D CLM_0799 blaI; penicillinase repressor K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D CLM_0798 beta-lactamase K17836 penP; beta-lactamase class A [EC:3.5.2.6]
D CLM_3488 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D CLM_3395 penicillin-binding protein K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:cby01502]
D CLM_2185 sensor histidine kinase K18345 vanSB; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3]
D CLM_2186 DNA-binding response regulator K18344 vanRB; two-component system, OmpR family, response regulator VanR
D CLM_0433 DNA-binding response regulator K18349 vanRC; two-component system, OmpR family, response regulator VanR
D CLM_0535 ddlB; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D CLM_1900 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D CLM_3860 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D CLM_1695 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D CLM_1696 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D CLM_1023 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D CLM_3127 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D CLM_1189 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D CLM_0717 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:cby01503]
D CLM_3516 putative N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLM_3910 cwlD; N-acetylmuramoyl-L-alanine amidase CwlD K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLM_1595 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLM_2631 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLM_2498 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLM_3413 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLM_3517 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLM_2289 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLM_1682 bacteriophage endolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLM_2036 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLM_1483 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLM_2915 bacteriophage endolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLM_4033 putative protease K04771 degP; serine protease Do [EC:3.4.21.107]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:cby01000]
C 01001 Protein kinases [BR:cby01001]
D CLM_2804 histidine kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D CLM_3051 capsular exopolysaccharide family protein K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3]
D CLM_2831 sensor histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D CLM_0354 sensor histidine kinase K07650 cssS; two-component system, OmpR family, sensor histidine kinase CssS [EC:2.7.13.3]
D CLM_1570 sensor histidine kinase K11633 yxdK; two-component system, OmpR family, sensor histidine kinase YxdK [EC:2.7.13.3]
D CLM_0387 sensor histidine kinase K11633 yxdK; two-component system, OmpR family, sensor histidine kinase YxdK [EC:2.7.13.3]
D CLM_2185 sensor histidine kinase K18345 vanSB; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3]
D CLM_2622 sensor histidine kinase K18940 arlS; two-component system, OmpR family, sensor histidine kinase ArlS [EC:2.7.13.3]
D CLM_2142 sensor histidine kinase K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3]
D CLM_1827 putative lantibiotic biosynthesis sensor histidine kinase K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3]
D CLM_1340 sensor histidine kinase K07706 agrC; two-component system, LytTR family, sensor histidine kinase AgrC [EC:2.7.13.3]
D CLM_3743 sensor histidine kinase K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D CLM_3114 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D CLM_0722 sensor histidine kinase K07717 glnK; two-component system, sensor histidine kinase GlnK [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:cby01009]
D CLM_2183 putative internalin K17550 PPP1R7; protein phosphatase 1 regulatory subunit 7
D CLM_3835 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D CLM_2202 hsp90; heat shock protein K04079 HSP90A; molecular chaperone HtpG
D CLM_2805 protein phosphatase family protein K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
C 01002 Peptidases and inhibitors [BR:cby01002]
D CLM_1712 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
D CLM_1491 type IV leader peptidase family protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D CLM_3361 gpr; spore protease K06012 gpr; spore protease [EC:3.4.24.78]
D CLM_1996 hydrogenase maturation protease K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-]
D CLM_2838 spoIIGA; sporulation factor SpoIIGA K06383 spoIIGA; stage II sporulation protein GA (sporulation sigma-E factor processing peptidase) [EC:3.4.23.-]
D CLM_2137 cloSI; clostripain K08587 cloSI; clostripain [EC:3.4.22.8]
D CLM_3728 guaA; GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D CLM_0105 NlpC/P60 family protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D CLM_1144 NlpC/P60 family protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D CLM_0563 NlpC/P60 family protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D CLM_0596 NlpC/P60 family protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D CLM_2032 nlpC/P60 family protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D CLM_3174 conserved hypothetical protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D CLM_3273 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D CLM_3308 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D CLM_3875 glmS; glutamine-fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D CLM_3135 DJ-1 family protein K03152 thiJ; protein deglycase [EC:3.5.1.124]
D CLM_1181 DJ-1/PfpI family protein K03152 thiJ; protein deglycase [EC:3.5.1.124]
D CLM_2344 sortase family protein K07284 srtA; sortase A [EC:3.4.22.70]
D CLM_0399 putative accessory gene regulator protein B K07813 agrB; accessory gene regulator B
D CLM_0406 putative accessory gene regulator protein B K07813 agrB; accessory gene regulator B
D CLM_1467 CAAX amino terminal protease family protein K07052 K07052; CAAX protease family protein
D CLM_2413 CAAX amino terminal protease family protein K07052 K07052; CAAX protease family protein
D CLM_2619 caax amino protease family protein K07052 K07052; CAAX protease family protein
D CLM_1799 caax amino protease family protein K07052 K07052; CAAX protease family protein
D CLM_0679 CAAX amino terminal protease family protein K07052 K07052; CAAX protease family protein
D CLM_0711 CAAX amino terminal protease family protein K07052 K07052; CAAX protease family protein
D CLM_0576 CAAX amino terminal protease family protein K07052 K07052; CAAX protease family protein
D CLM_3638 CAAX amino terminal protease family protein K07052 K07052; CAAX protease family protein
D CLM_1609 bacillolysin K01400 nprE; bacillolysin [EC:3.4.24.28]
D CLM_1605 npr; thermolysin metallopeptidase K01400 nprE; bacillolysin [EC:3.4.24.28]
D CLM_1606 npr; thermolysin metallopeptidase K01400 nprE; bacillolysin [EC:3.4.24.28]
D CLM_1607 npr; thermolysin metallopeptidase K01400 nprE; bacillolysin [EC:3.4.24.28]
D CLM_1608 npr; thermolysin metallopeptidase K01400 nprE; bacillolysin [EC:3.4.24.28]
D CLM_1861 colG; collagenase K01387 colA; microbial collagenase [EC:3.4.24.3]
D CLM_1547 zinc carboxypeptidase family protein K01308 yqgT; g-D-glutamyl-meso-diaminopimelate peptidase [EC:3.4.19.11]
D CLM_1189 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D CLM_0717 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D CLM_3745 peptidase family protein K06972 PITRM1; presequence protease [EC:3.4.24.-]
D CLM_1376 dipeptidase family protein K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D CLM_3788 putative dipeptidase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D CLM_0520 pepT; peptidase T K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4]
D CLM_2438 pepD; aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D CLM_3264 pepD; aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D CLM_1562 pepD; aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D CLM_3926 map; methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D CLM_4069 map; methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D CLM_0412 metallopeptidase, family M24 K01271 pepQ; Xaa-Pro dipeptidase [EC:3.4.13.9]
D CLM_2245 pepQ; Xaa-Pro dipeptidase K01271 pepQ; Xaa-Pro dipeptidase [EC:3.4.13.9]
D CLM_2472 metallopeptidase, family M24 K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D CLM_0643 pepP; Xaa-pro aminopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D CLM_0897 botA; bontoxilysin A K06011 boNT; botulinum neurotoxin [EC:3.4.24.69]
D CLM_3160 aminopeptidase II K19689 ampS; aminopeptidase [EC:3.4.11.-]
D CLM_3902 iadA; isoaspartyl dipeptidase K01305 iadA; beta-aspartyl-dipeptidase (metallo-type) [EC:3.4.19.-]
D CLM_4010 ftsH; ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D CLM_3787 ftsH; ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D CLM_0470 ATP-dependent metalloprotease K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D CLM_0263 glutamyl aminopeptidase family protein K01269 yhfE; aminopeptidase [EC:3.4.11.-]
D CLM_3389 putative metalloprotease K06402 spoIVFB; stage IV sporulation protein FB [EC:3.4.24.-]
D CLM_2718 rseP; RIP metalloprotease RseP K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D CLM_0800 putative beta-lactamase-inducing penicillin-binding protein K02172 blaR1; bla regulator protein blaR1
D CLM_4033 putative protease K04771 degP; serine protease Do [EC:3.4.21.107]
D CLM_3771 nisin leader peptide-processing serine protease NisP K20486 nisP; lantibiotic leader peptide-processing serine protease [EC:3.4.21.-]
D CLM_4083 subtilase family protein K17734 aprX; serine protease AprX [EC:3.4.21.-]
D CLM_2020 dacF; serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D CLM_2013 putative serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D CLM_3374 D-alanyl-D-alanine carboxypeptidase family protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D CLM_1581 D-alanyl-D-alanine carboxypeptidase family protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D CLM_3643 clpP_1; ATP-dependent Clp protease, proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D CLM_1658 serine protease K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D CLM_2055 serine protease K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D CLM_2932 clpP; Clp protease K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D CLM_4126 ATP-dependent protease K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D CLM_3640 lon; endopeptidase LA K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D CLM_3641 lonB; ATP-dependent protease LonB K04076 lonB; ATP-dependent Lon protease [EC:3.4.21.53]
D CLM_1952 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D CLM_0685 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D CLM_2736 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D CLM_2246 pepIP; prolyl aminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D CLM_3851 carboxyl-terminal protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D CLM_0162 cphB; cyanophycinase K13282 cphB; cyanophycinase [EC:3.4.15.6]
D CLM_0468 peptidase, S54 K19225 gluP; rhomboid protease GluP [EC:3.4.21.105]
D CLM_2089 spoIVB; stage IV sporulation protein B K06399 spoIVB; stage IV sporulation protein B [EC:3.4.21.116]
D CLM_0091 LD-carboxypeptidase family protein K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
D CLM_3529 peptidase, U32 family K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D CLM_2862 peptidase, U32 family K08303 prtC; U32 family peptidase [EC:3.4.-.-]
C 01003 Glycosyltransferases [BR:cby01003]
D CLM_0170 conserved hypothetical protein K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315]
D CLM_3488 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D CLM_3498 glycosyl transferase, WecB/TagA/CpsF family K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187]
D CLM_0191 tagO; undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D CLM_3779 cgs; cyclic beta 1-2 glucan synthetase K13688 chvB; cyclic beta-1,2-glucan glucanotransferase [EC:2.4.1.397]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:cby01005]
D CLM_0355 glycosyl transferase, group 2 family K20534 gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-]
D CLM_0191 tagO; undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:cby01011]
D CLM_4058 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D CLM_0203 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D CLM_3840 murB; UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D CLM_4040 murC; UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D CLM_4002 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D CLM_1694 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D CLM_0535 ddlB; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D CLM_1900 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D CLM_3860 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D CLM_4055 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D CLM_0091 LD-carboxypeptidase family protein K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
D CLM_1696 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D CLM_1023 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D CLM_3127 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D CLM_0485 putative undecaprenol kinase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D CLM_0388 uppP; undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D CLM_0418 PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D CLM_3501 mviN; integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase
D CLM_3488 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D CLM_3395 penicillin-binding protein K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D CLM_1693 stage V sporulation protein D K08384 spoVD; stage V sporulation protein D (sporulation-specific penicillin-binding protein)
D CLM_3845 penicillin-binding protein K05364 pbpA; penicillin-binding protein A
D CLM_2020 dacF; serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D CLM_2013 putative serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D CLM_3374 D-alanyl-D-alanine carboxypeptidase family protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D CLM_1581 D-alanyl-D-alanine carboxypeptidase family protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D CLM_1189 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D CLM_0717 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D CLM_0105 NlpC/P60 family protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D CLM_1144 NlpC/P60 family protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D CLM_0563 NlpC/P60 family protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D CLM_0596 NlpC/P60 family protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D CLM_2032 nlpC/P60 family protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D CLM_3174 conserved hypothetical protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D CLM_2344 sortase family protein K07284 srtA; sortase A [EC:3.4.22.70]
D CLM_3409 transglycosylase SLT domain protein K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D CLM_2864 conserved hypothetical protein TIGR00247 K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D CLM_0254 sleB; spore-cortex-lytic enzyme K27245 sleB; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D CLM_1498 putative cell wall hydrolase K27245 sleB; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D CLM_0204 spoIID; stage II sporulation protein D K06381 spoIID; stage II sporulation protein D (peptidoglycan lytic transglycosylase) [EC:4.2.2.29]
D CLM_3516 putative N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLM_3910 cwlD; N-acetylmuramoyl-L-alanine amidase CwlD K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLM_1595 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLM_2631 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLM_2498 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLM_3413 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLM_3517 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLM_2289 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLM_1682 bacteriophage endolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLM_2036 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLM_1483 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLM_2915 bacteriophage endolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:cby01004]
D CLM_4093 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D CLM_0856 3-oxoacyl-[acyl-carrier-protein] synthase III, homolog K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D CLM_4096 fabH; 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D CLM_4091 fabF; 3-oxoacyl-(acyl-carrier-protein) synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D CLM_0594 oxidoreductase, short chain dehydrogenase/reductase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CLM_4092 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CLM_4089 fabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D CLM_4094 oxidoreductase, 2-nitropropane dioxygenase family K02371 fabK; enoyl-[acyl-carrier protein] reductase II [EC:1.3.1.9]
D CLM_3295 lipase/acylhydrolase, GDSL family K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D CLM_3726 AMP-binding enzyme K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-]
D CLM_2750 plsX; fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D CLM_0495 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D CLM_0258 plsD; glycerol-3-phosphate O-acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins
C 01006 Prenyltransferases [BR:cby01006]
D CLM_2100 ispA; geranyltranstransferase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D CLM_2724 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D CLM_1503 undecaprenyl pyrophosphate synthetase homolog K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D CLM_1955 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
C 01007 Amino acid related enzymes [BR:cby01007]
D CLM_1252 gltX; glutamate--tRNA ligase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]
D CLM_3759 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D CLM_1358 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D CLM_3767 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D CLM_3972 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D CLM_1232 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D CLM_0119 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D CLM_0142 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D CLM_3576 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D CLM_0234 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D CLM_4004 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D CLM_3459 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D CLM_0706 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D CLM_1174 aspS; aspartate--tRNA ligase K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23]
D CLM_3460 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D CLM_4003 glyS; glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D CLM_0602 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D CLM_0022 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D CLM_3974 putative prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D CLM_3789 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D CLM_3546 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D CLM_2871 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D CLM_3538 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D CLM_3537 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D CLM_2691 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CLM_1961 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CLM_1169 pyridoxal-phosphate-dependent aminotransferase family K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D CLM_3567 aminotransferase, classes I and II K10907 K10907; aminotransferase [EC:2.6.1.-]
D CLM_1812 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CLM_1576 aminotransferase, classes I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D CLM_2181 aminotransferase, classes I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D CLM_1051 ilvE; branched-chain-amino-acid transaminase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D CLM_3122 putative branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D CLM_0977 putative pleiotropic regulatory protein K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98]
D CLM_3081 lipopolysaccharide biosynthesis protein RffA K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59]
C 00199 Cytochrome P450 [BR:cby00199]
D CLM_1194 cytochrome P450 K15629 CYP152A; fatty-acid peroxygenase [EC:1.11.2.4]
C 00194 Photosynthesis proteins [BR:cby00194]
D CLM_0201 atpC; ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D CLM_0200 atpD; ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D CLM_0199 atpG; ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D CLM_0198 atpA; ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D CLM_0197 atpH; ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D CLM_0196 atpF; ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D CLM_0195 atpE; ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D CLM_0194 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D CLM_0193 atpI; ATP synthase F0, I subunit K02116 atpI; ATP synthase protein I
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:cby03000]
D CLM_3822 AraC-family transcriptional regulator K13631 soxS; AraC family transcriptional regulator, mar-sox-rob regulon activator
D CLM_4068 transcriptional regulator, AraC family K18325 ramA; AraC family of transcriptional regulator, multidrug resistance transcriptional activator
D CLM_0929 transcriptional regulator, AraC family K13653 K13653; AraC family transcriptional regulator
D CLM_0854 transcriptional regulator, AraC family K13653 K13653; AraC family transcriptional regulator
D CLM_0874 transcription activator, effector binding K13653 K13653; AraC family transcriptional regulator
D CLM_2374 transcriptional regulator, AraC family K13653 K13653; AraC family transcriptional regulator
D CLM_1029 transcriptional regulator, AraC family K13653 K13653; AraC family transcriptional regulator
D CLM_0709 transcriptional regulator, AraC family K13653 K13653; AraC family transcriptional regulator
D CLM_0842 transcriptional regulator, AraC family K13653 K13653; AraC family transcriptional regulator
D CLM_1126 transcriptional regulator, LysR family K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon
D CLM_1819 transcriptional regulator, LysR family K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon
D CLM_2411 transcriptional regulator, DeoR family K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D CLM_0206 spoIIID; stage III sporulation protein D K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D
D CLM_1858 transcriptional regulator, DeoR family K22103 glcR; DeoR family transcriptional regulator, carbon catabolite repression regulator
D CLM_3337 CBS domain protein K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator
D CLM_0143 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D CLM_2206 treR; trehalose operon repressor K03486 treR2; GntR family transcriptional regulator, trehalose operon transcriptional repressor
D CLM_3199 transcriptional regulator, GntR family K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D CLM_1755 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D CLM_1249 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D CLM_1011 transcriptional regulator, GntR family K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D CLM_0747 transcriptional regulator, GntR family/aminotransferase K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D CLM_3156 transcriptional regulator, GntR family K07979 ytrA; GntR family transcriptional regulator
D CLM_1748 transcriptional regulator, TetR family K09017 rutR; TetR/AcrR family transcriptional regulator
D CLM_3240 transcriptional regulator, TetR family K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
D CLM_0627 transcriptional regulator, AsnC family K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D CLM_0118 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D CLM_2867 transcriptional regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D CLM_1545 transcriptional regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D CLM_0466 transcriptional regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D CLM_3194 transcriptional regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D CLM_3207 transcriptional regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D CLM_3631 transcriptional regulator, Fur family K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
D CLM_1512 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D CLM_1106 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D CLM_0771 transcriptional regulator, Crp/Fnr family K21562 flp; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D CLM_1180 cyclic nucleotide-binding domain protein K16326 yeiL; CRP/FNR family transcriptional regulator, putaive post-exponential-phase nitrogen-starvation regulator
D CLM_1505 putative transcriptional regulator K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D CLM_1329 rrf2 family protein K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor
D CLM_2876 rrF2 family protein K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor
D CLM_0905 putative arsenical resistance operon repressor ArsR K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D CLM_0560 putative cadmium resistance transcriptional regulator CadC K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
D CLM_0732 cupin domain protein K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
D CLM_0838 cupin domain protein K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
D CLM_0140 transcriptional regulator, PadR family K10947 K10947; PadR family transcriptional regulator
D CLM_1218 transcriptional regulator, PadR family K10947 K10947; PadR family transcriptional regulator
D CLM_1775 putative iron-dependent repressor K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D CLM_0799 blaI; penicillinase repressor K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D CLM_1275 birA; birA bifunctional protein K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D CLM_0879 putative DNA-binding protein K22299 rghR; HTH-type transcriptional regulator, competence development regulator
D CLM_2685 DNA-binding protein K22299 rghR; HTH-type transcriptional regulator, competence development regulator
D CLM_4039 purR; pur operon repressor K09685 purR; HTH-type transcriptional regulator, purine operon repressor
D CLM_1869 acoR; aco operon transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D CLM_1887 sensory box sigma-54 dependent transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D CLM_2154 aorR; aor transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D CLM_1883 sensory box sigma-54 dependent transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D CLM_0704 sigma-54 dependent transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D CLM_2177 sigma-54 dependent transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D CLM_2227 putative sigma-54 dependent transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D CLM_3740 transcriptional regulator, Rex family K01926 rex; redox-sensing transcriptional repressor
D CLM_2729 codY; GTP-sensing transcriptional pleiotropic repressor CodY K03706 codY; transcriptional pleiotropic repressor
D CLM_0552 conserved hypothetical protein K07727 K07727; putative transcriptional regulator
D CLM_2353 conserved hypothetical protein K07727 K07727; putative transcriptional regulator
D CLM_2082 conserved hypothetical protein K07727 K07727; putative transcriptional regulator
D CLM_2960 transcription regulator, Cro/CI family -related protein K07727 K07727; putative transcriptional regulator
D CLM_0846 conserved domain protein K07729 K07729; putative transcriptional regulator
D CLM_2574 conserved domain protein K07729 K07729; putative transcriptional regulator
D CLM_2598 putative DNA-binding protein K07729 K07729; putative transcriptional regulator
D CLM_0683 conserved domain protein K07729 K07729; putative transcriptional regulator
D CLM_0645 conserved domain protein K07729 K07729; putative transcriptional regulator
D CLM_2493 putative DNA-binding protein K07729 K07729; putative transcriptional regulator
D CLM_3446 putative DNA-binding protein K07729 K07729; putative transcriptional regulator
D CLM_3447 DNA-binding protein K07729 K07729; putative transcriptional regulator
D CLM_2684 conserved domain protein K07729 K07729; putative transcriptional regulator
D CLM_3859 conserved hypothetical protein K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI
D CLM_0767 licT; transcriptional antiterminator, LicT K03488 licT; beta-glucoside operon transcriptional antiterminator
D CLM_3121 transcriptional antiterminator, BglG family K03480 glcT; transcriptional antiterminator
D CLM_3200 transcriptional antiterminator, BglG family K03480 glcT; transcriptional antiterminator
D CLM_2361 putative PRD domain protein/PTS system, L-ascorbate family, IIA component K03483 mtlR; mannitol operon transcriptional activator
D CLM_2313 conserved hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D CLM_1462 conserved hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D CLM_2905 conserved hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D CLM_2558 transcriptional regulator, AbrB family K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D CLM_4029 stage V sporulation protein T K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T
D CLM_4143 stage 0 sporulation protein J K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D CLM_4145 parB family protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D CLM_3136 glpP; glycerol uptake operon antiterminator regulatory protein K02443 glpP; glycerol uptake operon antiterminator
D CLM_2095 argR; arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D CLM_3356 hrcA; heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D CLM_3983 ctsR; transciptional repressor CtsR K03708 ctsR; transcriptional regulator of stress and heat shock response
D CLM_0032 putative sensory box sigma-54 dependent transcriptional regulator K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D CLM_0275 cggR; central glycolytic genes regulator K05311 cggR; central glycolytic genes regulator
D CLM_1803 putative deoxyribonucleoside regulator K05346 deoR; deoxyribonucleoside regulator
D CLM_3184 pyrR; pyrimidine operon regulatory protein/uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D CLM_1715 pyrR; pyrimidine operon regulatory protein/uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D CLM_2834 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D CLM_1690 mraZ; mraZ protein K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:cby03021]
D CLM_0603 putative ATP-dependent helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
D CLM_3919 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D CLM_3956 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D CLM_3955 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D CLM_2813 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D CLM_3332 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D CLM_0063 RNA polymerase sigma-70 factor family K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D CLM_0788 RNA polymerase sigma-70 factor family K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D CLM_0979 RNA polymerase sigma-70 factor, ECF family K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D CLM_2609 RNA polymerase sigma-70 factor, ECF family K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D CLM_3794 RNA polymerase sigma factor, sigma-70 family K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D CLM_3492 sigF; RNA polymerase sigma-F factor K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor
D CLM_2845 sigK; RNA polymerase sigma-K factor K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor
D CLM_2836 sigG; RNA polymerase sigma-G factor K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor
D CLM_2837 sigE; RNA polymerase sigma-E factor K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor
D CLM_2680 RNA polymerase sigma factor, sigma-70 family K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor
D CLM_3967 sigH; RNA polymerase sigma-H factor K27000 sigH; RNA polymerase sigma-H factor
D CLM_0274 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D CLM_3007 fliA; RNA polymerase sigma factor for flagellar operon FliA K02405 fliA; RNA polymerase sigma factor FliA
D CLM_2714 nusA; N utilization substance protein A K02600 nusA; transcription termination/antitermination protein NusA
D CLM_2103 nusB; N utilization substance protein B K03625 nusB; transcription antitermination protein NusB
D CLM_3961 nusG; transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG
D CLM_3458 sigma-E factor regulator, RseC/MucC family K03803 rseC; sigma-E factor negative regulatory protein RseC
D CLM_4005 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D CLM_0790 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D CLM_0177 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:cby03019]
D CLM_3386 ribonuclease, Rne/Rng family K08301 rng; ribonuclease G [EC:3.1.26.-]
D CLM_2748 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D CLM_2866 RNA-metabolizing metallo-beta-lactamase family protein K12574 rnj; ribonuclease J [EC:3.1.-.-]
D CLM_1453 RNA-metabolising metallo-beta-lactamase K12574 rnj; ribonuclease J [EC:3.1.-.-]
D CLM_2696 HDIG/HD/KH domain protein K18682 rny; ribonucrease Y [EC:3.1.-.-]
D CLM_0282 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D CLM_3618 HDIG domain protein K03698 cbf; 3'-5' exoribonuclease [EC:3.1.-.-]
D CLM_0749 rhlE; ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D CLM_3166 ATP-dependent RNA helicase, DEAD/DEAH box family K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D CLM_1938 deaD; ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D CLM_1936 ATP-dependent RNA helicase, DEAD/DEAH box family K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D CLM_2228 ATP-dependent RNA helicase, DEAD/DEAH box family K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D CLM_1150 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D CLM_0280 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D CLM_2705 pnpA; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D CLM_0177 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D CLM_3835 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D CLM_3354 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D CLM_3732 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D CLM_1954 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein
D CLM_3103 csrA; carbon storage regulator K03563 csrA; carbon storage regulator
D CLM_3839 conserved hypothetical protein K06958 rapZ; RNase adapter protein RapZ
C 03041 Spliceosome
C 03011 Ribosome [BR:cby03011]
D CLM_1310 rpsA; ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D CLM_1964 4-hydroxy-3-methylbut-2-enyl diphosphate reductase / ribosomal protein S1 homolog K02945 RP-S1; small subunit ribosomal protein S1
D CLM_2728 rpsB; ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D CLM_3942 rpsC; ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D CLM_3920 rpsD; ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D CLM_3869 rpsD; ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D CLM_3931 rpsE; ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D CLM_4133 rpsF; ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D CLM_3952 rpsG; ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D CLM_3934 rpsH; ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D CLM_3912 rpsI; ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D CLM_3949 rpsJ; ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D CLM_3921 rpsK; ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D CLM_3953 rpsL; ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D CLM_3922 rpsM; ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D CLM_3935 rpsN; ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D CLM_2706 rpsO; ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D CLM_2741 rpsP; ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D CLM_3939 rpsQ; ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D CLM_4131 rpsR; ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D CLM_3944 rpsS; ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D CLM_3362 rpsT; ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D CLM_3348 rpsU; ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D CLM_3959 rplA; ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D CLM_3945 rplB; ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D CLM_3948 rplC; ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D CLM_3947 rplD; ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D CLM_3936 rplE; ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D CLM_3933 rplF; ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D CLM_4127 rplI; ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D CLM_3958 rplJ; ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D CLM_3960 rplK; ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D CLM_3957 rplL; ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D CLM_3913 rplM; ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D CLM_3938 rplN; ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D CLM_3929 rplO; ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D CLM_3941 rplP; ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D CLM_3918 rplQ; ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D CLM_3932 rplR; ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D CLM_2737 rplS; ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D CLM_3542 rplT; ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D CLM_3384 rplU; ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D CLM_3943 rplV; ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D CLM_3946 rplW; ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D CLM_3937 rplX; ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D CLM_3382 rpmA; ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D CLM_2798 rpmB; ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D CLM_3940 rpmC; ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D CLM_3930 rpmD; ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D CLM_0178 rpmE; ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D CLM_2751 ribosomal protein L32 family protein K02911 RP-L32; large subunit ribosomal protein L32
D CLM_3963 rpmG; ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D CLM_4153 rpmH; ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D CLM_3543 rpmI; ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D CLM_3923 rpmJ; ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D CLM_3522 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 K02897 RP-L25; large subunit ribosomal protein L25
D CLM_3629 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 K02897 RP-L25; large subunit ribosomal protein L25
D CLM_3954 ribosomal protein L7Ae family protein K07590 RP-L7A; large subunit ribosomal protein L7A
D CLM_0012 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CLM_3997 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CLM_0069 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CLM_3988 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CLM_0492 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CLM_0088 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CLM_0061 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CLM_0081 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CLM_0054 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CLM_0050 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CLM_0065 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CLM_3993 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CLM_0486 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CLM_0057 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CLM_4001 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CLM_0077 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CLM_0084 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CLM_0008 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CLM_0087 rrl; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CLM_0011 rrl; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:cby03009]
D CLM_2748 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D CLM_3340 era; GTP-binding protein Era K03595 era; GTPase
D CLM_3381 obg; Spo0B-associated GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-]
D CLM_2714 nusA; N utilization substance protein A K02600 nusA; transcription termination/antitermination protein NusA
D CLM_2103 nusB; N utilization substance protein B K03625 nusB; transcription antitermination protein NusB
D CLM_3961 nusG; transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG
D CLM_3707 RNA pseudouridine synthase family protein K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D CLM_0124 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D CLM_2807 sun; ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D CLM_2794 putative methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D CLM_3351 conserved hypothetical protein TIGR00046 K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D CLM_4146 gidB; methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D CLM_1691 mraW; S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D CLM_0104 tetrapyrrole methylase family protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D CLM_2097 putative hemolysin A K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D CLM_3969 RNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D CLM_4062 conserved hypothetical protein TIGR00246 K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D CLM_2806 radical SAM enzyme, Cfr family K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D CLM_3236 florfenicol/chloramphenicol resistance protein K15632 cfr; 23S rRNA (adenine-C8)-methyltransferase [EC:2.1.1.224]
D CLM_3829 rumA; 23S rRNA (uracil-5-)-methyltransferase RumA K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D CLM_1970 rluB; ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D CLM_1596 pseudouridine synthase, RluA family K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D CLM_3375 pseudouridine synthase, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D CLM_1713 pseudouridine synthase, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D CLM_3758 rimI; ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D CLM_0049 acetyltransferase, GNAT family K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
D CLM_2739 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
D CLM_2699 RNA modification enzyme, MiaB family K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D CLM_3352 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D CLM_3386 ribonuclease, Rne/Rng family K08301 rng; ribonuclease G [EC:3.1.26.-]
D CLM_2869 conserved hypothetical protein TIGR00250 K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D CLM_3971 RNase3 domain protein K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-]
D CLM_3166 ATP-dependent RNA helicase, DEAD/DEAH box family K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D CLM_1938 deaD; ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D CLM_1936 ATP-dependent RNA helicase, DEAD/DEAH box family K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D CLM_2228 ATP-dependent RNA helicase, DEAD/DEAH box family K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D CLM_2803 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D CLM_2824 engA; ribosome-associated GTPase EngA K03977 engA; GTPase
D CLM_2735 GTP-binding protein K14540 rbgA; ribosome biogenesis GTPase A
D CLM_3485 GTP-binding protein K03665 hflX; GTPase
D CLM_0185 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D CLM_3464 relA; GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D CLM_2710 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D CLM_2715 conserved hypothetical protein K09748 rimP; ribosome maturation factor RimP
D CLM_0003 S4 domain protein K14761 rlbA; ribosome-associated protein
D CLM_3343 conserved hypothetical protein TIGR00043 K07042 ybeY; probable rRNA maturation factor
D CLM_3380 putative RNA-binding protein K07574 yhbY; RNA-binding protein
D CLM_0220 yfiA; ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor
D CLM_1689 ychF; GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase
D CLM_2752 conserved hypothetical protein K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:cby03016]
D CLM_1549 rnz; ribonuclease Z K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D CLM_2616 polyA polymerase family protein K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D CLM_3974 putative prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D CLM_3789 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D CLM_0142 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D CLM_0234 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D CLM_0119 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D CLM_1232 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D CLM_4004 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D CLM_3459 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D CLM_2871 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D CLM_0706 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D CLM_4003 glyS; glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D CLM_3546 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D CLM_0602 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D CLM_0022 serS; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D CLM_3972 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D CLM_3576 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D CLM_3460 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D CLM_3538 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D CLM_3537 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D CLM_3759 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D CLM_1358 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D CLM_3767 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D CLM_3463 dtd; D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D CLM_3349 HIT family protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D CLM_1489 HIT family protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D CLM_0591 trmB; tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D CLM_3914 truA; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D CLM_2131 truA; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D CLM_2708 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D CLM_2875 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D CLM_1333 aminotransferase, class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D CLM_0185 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D CLM_1955 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D CLM_4148 trmE; tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D CLM_4147 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D CLM_3372 selD; selenide, water dikinase, selenocysteine-containing K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D CLM_4152 rnpA; ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D CLM_3327 Bacterial RNase P class A K01978 rnpB; M1 RNA
D CLM_3189 ligT; 2'-5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
D CLM_1174 aspS; aspartate--tRNA ligase K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23]
D CLM_1252 gltX; glutamate--tRNA ligase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]
D CLM_1745 conserved hypothetical protein K19055 prdX; Ala-tRNA(Pro) deacylase [EC:3.1.1.-]
D CLM_0034 cytidine/deoxycytidylate deaminase family protein K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D CLM_4007 dihydrouridine synthase K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D CLM_1958 miaB; tRNA-i(6)A37 thiotransferase enzyme MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D CLM_3350 RNA modification enzyme, MiaB family K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5]
D CLM_2738 trmD; tRNA (guanine-N1)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D CLM_3330 conserved hypothetical protein K06967 trmK; tRNA (adenine22-N1)-methyltransferase [EC:2.1.1.217]
D CLM_0267 conserved hypothetical protein K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D CLM_0103 conserved hypothetical protein K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223]
D CLM_3539 RNA methyltransferase, TrmH family K03437 spoU; RNA methyltransferase, TrmH family
D CLM_3301 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D CLM_1336 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D CLM_0209 conserved hypothetical protein K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D CLM_3474 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D CLM_1798 ExsB protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D CLM_0969 queD; queuosine biosynthesis protein QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D CLM_1795 queD; queuosine biosynthesis protein QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D CLM_1796 radical SAM domain protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D CLM_0257 iron-sulfur cluster-binding protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D CLM_3473 tgt; tRNA-guanine transglycosylase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D CLM_4012 tilS; tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D CLM_3757 glycoprotease family protein K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D CLM_3747 metalloendopeptidase, glycoprotease family protein K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D CLM_3756 conserved hypothetical protein TIGR00150 K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D CLM_0047 thiF domain protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D CLM_2790 conserved hypothetical protein K27343 tmcAL; tRNA(Met) cytidine acetate ligase [EC:6.3.4.-]
D CLM_0282 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D CLM_2705 pnpA; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:cby03012]
D CLM_2711 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D CLM_3544 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D CLM_3741 putative drug resistance ABC transporter, ATP-binding protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D CLM_2727 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts
D CLM_3950 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu
D CLM_3964 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu
D CLM_3985 fusA; translation elongation factor G K02355 fusA; elongation factor G
D CLM_3951 fusA; translation elongation factor G K02355 fusA; elongation factor G
D CLM_3370 selB; selenocysteine-specific translation elongation factor K03833 selB; selenocysteine-specific elongation factor
D CLM_0182 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D CLM_2725 frr; ribosome recycling factor K02838 frr; ribosome recycling factor
D CLM_0181 prmC; protein-(glutamine-N5) methyltransferase, release factor-specific K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D CLM_4032 pth; aminoacyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D CLM_3924 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D CLM_2114 efp; translation elongation factor P K02356 efp; elongation factor P
D CLM_0222 prfB; peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
D CLM_3765 prfC; peptide chain release factor 3 K02837 prfC; peptide chain release factor 3
C 03110 Chaperones and folding catalysts [BR:cby03110]
D CLM_0480 clpB; clpB protein K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D CLM_3980 clpC; negative regulator of genetic competence MecB/ClpC K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC
D CLM_3642 clpX; ATP-dependent Clp protease, ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D CLM_2202 hsp90; heat shock protein K04079 HSP90A; molecular chaperone HtpG
D CLM_3354 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D CLM_3732 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D CLM_3353 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D CLM_0238 molecular chaperone, DnaJ family K03686 dnaJ; molecular chaperone DnaJ
D CLM_3556 hsp33; 33 kDa chaperonin K04083 hslO; molecular chaperone Hsp33
D CLM_3355 grpE; co-chaperone GrpE K03687 GRPE; molecular chaperone GrpE
D CLM_1919 heat shock protein K13993 HSP20; HSP20 family protein
D CLM_0974 heat shock protein K13993 HSP20; HSP20 family protein
D CLM_3733 groES; chaperonin, 10 kDa K04078 groES; chaperonin GroES
D CLM_4033 putative protease K04771 degP; serine protease Do [EC:3.4.21.107]
D CLM_4010 ftsH; ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D CLM_3787 ftsH; ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D CLM_0470 ATP-dependent metalloprotease K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D CLM_0194 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D CLM_0513 hypA; hydrogenase nickel insertion protein HypA K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF
D CLM_2424 hypA; hydrogenase nickel insertion protein HypA K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF
D CLM_0511 hypB; hydrogenase accessory protein HypB K04652 hypB; hydrogenase nickel incorporation protein HypB
D CLM_2425 hypB; hydrogenase accessory protein HypB K04652 hypB; hydrogenase nickel incorporation protein HypB
D CLM_4054 putative peptidyl-prolyl cis-trans isomerase, cyclophilin-type K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D CLM_4030 prsA family protein K07533 prsA; foldase protein PrsA [EC:5.2.1.8]
D CLM_0083 peptidil-prolyl isomerase family protein K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
D CLM_3901 trx; thioredoxin K03671 TXN; thioredoxin
D CLM_1977 thioredoxin family protein K03671 TXN; thioredoxin
D CLM_1419 thioredoxin family protein K03671 TXN; thioredoxin
D CLM_1410 glutaredoxin-like protein, YruB-family K03676 grxC; glutaredoxin 3
C 04131 Membrane trafficking [BR:cby04131]
D CLM_0907 putative arsenite-transporting ATPase ArsA K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D CLM_0276 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D CLM_3834 pykA; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D CLM_2202 hsp90; heat shock protein K04079 HSP90A; molecular chaperone HtpG
C 04121 Ubiquitin system [BR:cby04121]
C 03051 Proteasome [BR:cby03051]
D CLM_2202 hsp90; heat shock protein K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:cby03032]
D CLM_0472 rnhA; ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D CLM_4026 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D CLM_0001 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D CLM_4125 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D CLM_4101 putative DNA replication protein DnaC K02315 dnaC; DNA replication protein DnaC
D CLM_2562 putative DNA replication protein DnaC K02315 dnaC; DNA replication protein DnaC
D CLM_3444 putative DNA replication protein K02315 dnaC; DNA replication protein DnaC
D CLM_3333 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D CLM_4132 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D CLM_0463 single-strand binding domain protein K03111 ssb; single-strand DNA-binding protein
D CLM_3836 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D CLM_2716 polC; DNA polymerase III, alpha subunit, Gram-positive type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D CLM_0002 dnaN; DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D CLM_3363 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D CLM_0099 putative DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D CLM_0308 exonuclease, DNA polymerase III, epsilon subunit family K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CLM_0037 dnaX; DNA polymerase III, gamma and tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D CLM_2734 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D CLM_3411 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D CLM_3704 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D CLM_2538 D12 class N6 adenine-specific DNA methyltransferase superfamily K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D CLM_0007 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D CLM_0006 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D CLM_3137 DNA topoisomerase, GyrA/ParC subunit family K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D CLM_3138 DNA topoisomerase, GyrB/ParE subunit family K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D CLM_2730 topA; DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D CLM_1448 topB; DNA topoisomerase III K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
D CLM_1742 DNA topoisomerase K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:cby03036]
D CLM_2748 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D CLM_4026 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D CLM_0001 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D CLM_1954 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein
D CLM_2745 smc; chromosome segregation protein SMC K03529 smc; chromosome segregation protein
D CLM_2017 scpA; segregation and condensation protein A K05896 scpA; segregation and condensation protein A
D CLM_2016 scpB; segregation and condensation protein B K06024 scpB; segregation and condensation protein B
D CLM_2840 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D CLM_4022 putative cell division protein FtsL K13052 divIC; cell division protein DivIC
D CLM_3853 putative cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D CLM_2700 ftsK; DNA translocase FtsK/SpoIIIE K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D CLM_1692 putative cell division protein FtsL K03586 ftsL; cell division protein FtsL
D CLM_1698 cell division protein FtsQ K03589 ftsQ; cell division protein FtsQ
D CLM_1697 cell cycle protein, FtsW/RodA/SpoVE family K03588 ftsW; cell division protein FtsW
D CLM_3852 putative cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D CLM_2839 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D CLM_3536 conserved hypothetical protein K09888 zapA; cell division protein ZapA
D CLM_3516 putative N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLM_3910 cwlD; N-acetylmuramoyl-L-alanine amidase CwlD K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLM_1595 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLM_2631 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLM_2498 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLM_3413 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLM_3517 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLM_2289 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLM_1682 bacteriophage endolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLM_2036 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLM_1483 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLM_2915 bacteriophage endolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLM_3394 minC; septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D CLM_3393 minD; septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D CLM_3392 minE; cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor
D CLM_1706 divIVA; cell-division initiation protein DivIVA K04074 divIVA; cell division initiation protein
D CLM_1703 conserved hypothetical protein K09772 sepF; cell division inhibitor SepF
D CLM_3398 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D CLM_0207 mbl; Mbl protein K03569 mreB; rod shape-determining protein MreB and related proteins
D CLM_3397 mreC; rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC
D CLM_3396 mreD; rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD
D CLM_3391 rodA; rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA
D CLM_0723 rodA; rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA
D CLM_4144 soj; sporulation initiation inhibitor protein soj K03496 parA; chromosome partitioning protein
D CLM_4143 stage 0 sporulation protein J K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D CLM_4145 parB family protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D CLM_3137 DNA topoisomerase, GyrA/ParC subunit family K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D CLM_3138 DNA topoisomerase, GyrB/ParE subunit family K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D CLM_4147 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D CLM_4146 gidB; methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D CLM_2026 xerD; tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD
D CLM_2087 site-specific recombinase, phage integrase family K04763 xerD; integrase/recombinase XerD
D CLM_2540 site-specific recombinase, phage integrase family K04763 xerD; integrase/recombinase XerD
D CLM_0949 phage integrase K04763 xerD; integrase/recombinase XerD
D CLM_1950 site-specific recombinase, phage integrase family K04763 xerD; integrase/recombinase XerD
D CLM_2083 site-specific recombinase, phage integrase family K04763 xerD; integrase/recombinase XerD
D CLM_3810 site-specific recombinase, phage integrase family K04763 xerD; integrase/recombinase XerD
D CLM_4027 MazG family protein K02499 yabN; tetrapyrrole methylase family protein / MazG family protein
D CLM_0131 MRP protein homolog K03593 mrp; ATP-binding protein involved in chromosome partitioning
D CLM_1080 Fic family protein K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D CLM_3639 ysxC; ribosome biogenesis GTP-binding protein YsxC K03978 engB; GTP-binding protein
D CLM_3837 conserved hypothetical protein K09762 whiA; cell division protein WhiA
C 03400 DNA repair and recombination proteins [BR:cby03400]
D CLM_1766 ogt; methylated-DNA-(protein)-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D CLM_1424 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
D CLM_3737 putative 8-oxoguanine DNA glycosylase K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
D CLM_0259 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D CLM_0603 putative ATP-dependent helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
D CLM_0761 putative mutator mutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D CLM_1391 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D CLM_0056 uracil-DNA glycosylase family protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D CLM_0117 udgA; uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D CLM_0746 conserved domain protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D CLM_1718 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D CLM_3131 AP endonuclease, family 2 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D CLM_3130 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D CLM_3704 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D CLM_3411 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D CLM_3848 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
D CLM_3849 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
D CLM_3842 uvrC; excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C
D CLM_3616 GIY-YIG domain protein K03703 uvrC; excinuclease ABC subunit C
D CLM_1495 helicase, UvrD/REP/exonuclease family protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CLM_3786 conserved hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CLM_3705 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CLM_1591 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CLM_0852 conserved hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CLM_3300 putative helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CLM_3956 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D CLM_3955 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D CLM_3919 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D CLM_2813 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D CLM_4031 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D CLM_1957 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D CLM_3528 MutS2 family protein K07456 mutS2; DNA mismatch repair protein MutS2
D CLM_0739 MutS domain protein K07456 mutS2; DNA mismatch repair protein MutS2
D CLM_1956 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D CLM_2102 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D CLM_2101 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D CLM_3836 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D CLM_2716 polC; DNA polymerase III, alpha subunit, Gram-positive type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D CLM_0002 dnaN; DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D CLM_3363 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D CLM_0099 putative DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D CLM_0308 exonuclease, DNA polymerase III, epsilon subunit family K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CLM_0037 dnaX; DNA polymerase III, gamma and tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D CLM_4132 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D CLM_0463 single-strand binding domain protein K03111 ssb; single-strand DNA-binding protein
D CLM_2538 D12 class N6 adenine-specific DNA methyltransferase superfamily K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D CLM_0217 helicase, RecD/TraA family K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D CLM_2697 recA; recA protein K03553 recA; recombination protein RecA
D CLM_3476 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D CLM_3475 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D CLM_2811 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D CLM_0556 sbcC; exonuclease SbcCD, C subunit K03546 sbcC; DNA repair protein SbcC/Rad50
D CLM_0555 sbcD; exonuclease SbcCD, D subunit K03547 sbcD; DNA repair protein SbcD/Mre11
D CLM_3979 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D CLM_0004 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
D CLM_2795 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D CLM_0039 recR; recombination protein RecR K06187 recR; recombination protein RecR
D CLM_2094 recN; DNA repair protein recN K03631 recN; DNA repair protein RecN (Recombination protein N)
D CLM_0518 addA; ATP-dependent nuclease subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
D CLM_0506 addB; ATP-dependent nuclease subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D CLM_0007 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D CLM_0006 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D CLM_2730 topA; DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D CLM_4026 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D CLM_2857 recombinase, phage RecT family K07455 recT; recombination protein RecT
D CLM_1150 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D CLM_3181 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D CLM_1952 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D CLM_3586 recX; regulatory protein RecX K03565 recX; regulatory protein
D CLM_3178 nrdA; ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D CLM_3177 nrdB; ribonucleoside-diphosphate reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D CLM_2709 DHH family protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
C 03029 Mitochondrial biogenesis [BR:cby03029]
D CLM_2711 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D CLM_3544 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D CLM_2727 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts
D CLM_3950 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu
D CLM_3964 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu
D CLM_3985 fusA; translation elongation factor G K02355 fusA; elongation factor G
D CLM_3951 fusA; translation elongation factor G K02355 fusA; elongation factor G
D CLM_1540 helicase domain protein K17675 SUPV3L1; ATP-dependent RNA helicase SUPV3L1/SUV3 [EC:5.6.2.6]
D CLM_3340 era; GTP-binding protein Era K03595 era; GTPase
D CLM_3759 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D CLM_1358 tyrS; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D CLM_0234 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D CLM_3459 aspS; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D CLM_4003 glyS; glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D CLM_1232 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D CLM_3700 gatA; glutamyl-tRNA(Gln) amidotransferase, A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D CLM_3699 gatB; glutamyl-tRNA(Gln) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D CLM_3701 gatC; glutamyl-tRNA(Gln) amidotransferase, C subunit K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D CLM_4132 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D CLM_0463 single-strand binding domain protein K03111 ssb; single-strand DNA-binding protein
D CLM_3354 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D CLM_3355 grpE; co-chaperone GrpE K03687 GRPE; molecular chaperone GrpE
D CLM_3732 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D CLM_3733 groES; chaperonin, 10 kDa K04078 groES; chaperonin GroES
D CLM_3353 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D CLM_0238 molecular chaperone, DnaJ family K03686 dnaJ; molecular chaperone DnaJ
D CLM_2875 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D CLM_1333 aminotransferase, class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D CLM_0131 MRP protein homolog K03593 mrp; ATP-binding protein involved in chromosome partitioning
D CLM_4150 oxaA; membrane protein OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase
D CLM_2202 hsp90; heat shock protein K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:cby02000]
D CLM_2586 putative ABC transporter, ATP-binding/permease protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D CLM_1206 ABC transporter ATP-binding/permease protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D CLM_1842 ABC transporter ATP-binding/permease protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D CLM_1207 ABC transport ATP-binding/permease protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D CLM_1843 ABC transporter ATP-binding/permease protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D CLM_2585 putative ABC transporter, ATP-binding/permease protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D CLM_2171 ABC transporter, ATP-binding/permease protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D CLM_2149 putative ABC transporter, ATP-binding/permease protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D CLM_2170 putative ABC transporter, ATP-binding/permease protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D CLM_2148 ABC transporter, ATP-binding/permease protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D CLM_0382 lipid A export ATP-binding/permease protein MsbA K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D CLM_1466 ABC transporter, ATP-binding protein/permease protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D CLM_0619 lipid A export ATP-binding/permease protein MsbA K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D CLM_3254 ABC transporter, ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D CLM_3778 putative multidrug export ATP-binding/permease protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D CLM_0655 ABC transporter, ATP-binding protein K18231 msr; macrolide transport system ATP-binding/permease protein
D CLM_3237 drug resistance ABC transporter, RA2 family, ATP-binding protein K19350 lsa; lincosamide and streptogramin A transport system ATP-binding/permease protein
D CLM_1224 drug resistance ABC transporter, ATP-binding protein K15738 uup; ABC transport system ATP-binding/permease protein
D CLM_1721 modA; molybdate ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D CLM_1722 modB; molybdate ABC transporter, permease protein K02018 modB; molybdate transport system permease protein
D CLM_1723 putative molybdate ABC transporter, ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D CLM_2163 tungstate ABC transporter, tungstate-binding protein K05772 tupA; tungstate transport system substrate-binding protein
D CLM_2162 tupB; tungstate ABC transporter, permease protein K05773 tupB; tungstate transport system permease protein
D CLM_2161 tupC; tungstate ABC transporter, ATP-binding protein K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6]
D CLM_1305 ABC transporter, substrate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D CLM_1306 ABC transporter, permease protein K02011 afuB; iron(III) transport system permease protein
D CLM_1307 ABC transporter, ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D CLM_0667 potCD; spermidine/putrescine transport system permease protein PotC/spermidine/putrescine-binding periplasmic protein PotD K11069 potD; spermidine/putrescine transport system substrate-binding protein
D CLM_0666 potB; spermidine/putrescine ABC transporter, permease protein PotB K11071 potB; spermidine/putrescine transport system permease protein
D CLM_0665 potA; spermidine/putrescine ABC transporter, ATP-binding protein K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D CLM_1264 putative ABC transporter, solute-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D CLM_1267 ABC transporter, permease protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D CLM_1266 ABC transporter, permease protein K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D CLM_1268 ABC transporter, ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D CLM_1878 glycine betaine/L-proline ABC transporter, permease/glycine betaine/L-proline-binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein
D CLM_1877 glycine betaine/L-proline ABC transporter, ATP-binding protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D CLM_1542 putative lipoprotein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D CLM_3580 putative ABC transporter, substrate-binding protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D CLM_3667 putative lipoprotein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D CLM_1543 putative ABC transporter, permease protein K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D CLM_3583 ABC transporter, permease protein K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D CLM_3662 ABC transporter, permease protein K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D CLM_1544 ABC transporter, ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D CLM_3582 ABC transporter, ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D CLM_3660 nitrate transport ATP-binding protein NrtD K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D CLM_1750 carbohydrate uptake ABC transporter, CUT1 family, ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D CLM_0269 lipoprotein, bmp family K07335 bmpA; basic membrane protein A and related proteins
D CLM_0271 sugar ABC transporter, permease protein K23535 nupB; general nucleoside transport system permease protein
D CLM_0272 sugar ABC transporter, permease protein K23536 nupC; general nucleoside transport system permease protein
D CLM_0270 sugar ABC transporter, ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein
D CLM_0150 putative arabinose-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D CLM_1753 carbohydrate uptake ABC transporter, CUT1 family, carbohydrate-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D CLM_1751 carbohydrate uptake ABC transporter, CUT1 family, permease protein K02025 ABC.MS.P; multiple sugar transport system permease protein
D CLM_1752 carbohydrate uptake ABC transporter, CUT1 family, permease protein K02026 ABC.MS.P1; multiple sugar transport system permease protein
D CLM_0454 phosphate uptake ABC transporter, PhoT family, phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D CLM_2830 pstS; phosphate ABC transporter, phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D CLM_0455 phosphate uptake ABC transporter, PhoT family, permease protein K02037 pstC; phosphate transport system permease protein
D CLM_2829 pstC; phosphate ABC transporter, permease protein PstC K02037 pstC; phosphate transport system permease protein
D CLM_0456 phosphate uptake ABC transporter, PhoT family, permease protein K02038 pstA; phosphate transport system permease protein
D CLM_2828 pstA; phosphate ABC transporter, permease protein PstA K02038 pstA; phosphate transport system permease protein
D CLM_2827 pstB; phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D CLM_0457 phosphate uptake ABC transporter, PhoT family, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D CLM_2235 polar amino acid uptake ABC transporter, PAAT family, amino acid-binding protein K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein
D CLM_2233 polar amino acid uptake family ABC transporter, PAAT family, ATP-binding protein K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1]
D CLM_0536 putative high-affinity branched-chain amino acid ABC transporter, amino acid-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D CLM_0537 high-affinity branched-chain amino acid ABC transporter, permease protein K01997 livH; branched-chain amino acid transport system permease protein
D CLM_0538 putative high-affinity branched-chain amino acid ABC transporter, permease protein K01998 livM; branched-chain amino acid transport system permease protein
D CLM_0539 putative high-affinity branched chain amino acid ABC transporter, ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D CLM_0540 putative high-affinity branched chain amino acid ABC transporter, ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D CLM_1245 lipoprotein, NLPA family K02073 metQ; D-methionine transport system substrate-binding protein
D CLM_1246 lipoprotein, NLPA family K02073 metQ; D-methionine transport system substrate-binding protein
D CLM_1737 lipoprotein, NLPA family K02073 metQ; D-methionine transport system substrate-binding protein
D CLM_1244 methionine ABC transporter, MUT family, permease protein K02072 metI; D-methionine transport system permease protein
D CLM_1736 methionine ABC transporter, MUT family, permease protein K02072 metI; D-methionine transport system permease protein
D CLM_1243 methionine ABC transporter, MUT family, ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein
D CLM_1735 methionine ABC transporter, MUT family, ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein
D CLM_0783 putative ABC transporter, substrate-binding protein K01989 K01989; putative tryptophan/tyrosine transport system substrate-binding protein
D CLM_1313 putative ABC transporter, substrate-binding protein K01989 K01989; putative tryptophan/tyrosine transport system substrate-binding protein
D CLM_1314 ABC transporter, permease protein K05832 K05832; putative tryptophan/tyrosine transport system permease protein
D CLM_0781 ABC transporter, permease protein K05832 K05832; putative tryptophan/tyrosine transport system permease protein
D CLM_1315 ABC transporter, ATP-binding protein K05833 K05833; putative tryptophan/tyrosine transport system ATP-binding protein
D CLM_0782 ABC transporter, ATP-binding protein K05833 K05833; putative tryptophan/tyrosine transport system ATP-binding protein
D CLM_1332 polar amino acid uptake ABC transporter, PAAT family, amino acid-binding protein K16961 yxeM; putative S-methylcysteine transport system substrate-binding protein
D CLM_1577 amino acid ABC transporter, amino acid-binding protein K16961 yxeM; putative S-methylcysteine transport system substrate-binding protein
D CLM_1331 amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family K16962 yxeN; putative S-methylcysteine transport system permease protein
D CLM_1578 amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family K16962 yxeN; putative S-methylcysteine transport system permease protein
D CLM_1579 polar amino acid uptake family ABC transporter, PAAT family, ATP-binding protein K16963 yxeO; putative S-methylcysteine transport system ATP-binding protein
D CLM_0528 polar amino acid uptake ABC transporter, PAAT family, amino acid-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D CLM_1588 polar amino acid uptake ABC transporter, PAAT family, amino acid-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D CLM_0527 amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family K02029 ABC.PA.P; polar amino acid transport system permease protein
D CLM_0499 polar amino acid uptake family ABC transporter, PAAT family, ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D CLM_3563 oligopeptide/dipeptide ABC transporter, oligopeptide/dipeptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D CLM_3698 bacterial extracellular solute-binding protein, family 5 K15580 oppA; oligopeptide transport system substrate-binding protein
D CLM_3562 oligopeptide/dipeptide ABC transporter, permease protein K15581 oppB; oligopeptide transport system permease protein
D CLM_3561 oligopeptide/dipeptide ABC transporter, permease protein K15582 oppC; oligopeptide transport system permease protein
D CLM_3560 oligopeptide/dipeptide ABC transporter, ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein
D CLM_3559 oligopeptide/dipeptide ABC transporter, ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D CLM_1912 peptide/opine/nickel uptake ABC transporter, PepT family, substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D CLM_1383 putative oligopeptide ABC transporter, oligopeptide-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D CLM_0956 methyl-accepting chemotaxis protein/bacterial extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D CLM_1530 peptide/opine/nickel uptake ABC transporter, PepT family, substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D CLM_1913 peptide/opine/nickel uptake ABC transporter, PepT family, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D CLM_1382 putative oligopeptide ABC transporter, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D CLM_1531 peptide/opine/nickel uptake ABC transporter, PepT family, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D CLM_1914 peptide/opine/nickel uptake ABC transporter, PepT family, permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D CLM_1381 putative oligopeptide ABC transporter, permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D CLM_1532 peptide/opine/nickel uptake ABC transporter, PepT family, permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D CLM_1533 peptide/opine/nickel uptake ABC transporter, PepT family K02031 ddpD; peptide/nickel transport system ATP-binding protein
D CLM_1915 ABC transporter, ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D CLM_0378 iron compound ABC transporter, iron compound-binding protein K25308 fhuD; ferric hydroxamate/heme transport system substrate-binding protein
D CLM_0804 fhuB; ferrichrome transport system permease protein FhuB K25288 fhuB; ferric hydroxamate/heme transport system permease protein
D CLM_0379 ferrichrome transport system permease protein FhuB K25288 fhuB; ferric hydroxamate/heme transport system permease protein
D CLM_0805 fhuG; ferrichrome transport system permease protein FhuG K25289 fhuG; ferric hydroxamate/heme transport system permease protein
D CLM_0380 ferrichrome transport system permease protein FhuG K25289 fhuG; ferric hydroxamate/heme transport system permease protein
D CLM_0381 ferrichrome transport ATP-binding protein FhuC K25290 fhuA; ferric hydroxamate/heme transport system ATP-binding protein [EC:7.2.2.16]
D CLM_0806 fhuC; ferrichrome transport ATP-binding protein FhuC K25290 fhuA; ferric hydroxamate/heme transport system ATP-binding protein [EC:7.2.2.16]
D CLM_1204 iron chelate uptake ABC transporter, FeCT family, solute-binding protein K25282 yclQ; iron-siderophore transport system substrate-binding protein
D CLM_1202 iron chelate uptake ABC transporter, FeCT family, permease protein K25283 yclO; iron-siderophore transport system permease protein
D CLM_1201 iron chelate uptake ABC transporter, FeCT family, permease protein K25284 yclN; iron-siderophore transport system permease protein
D CLM_1203 iron chelate uptake ABC transporter, FeCT family, ATP-binding protein K25285 yclP; iron-siderophore transport system ATP-binding protein [EC:7.2.2.-]
D CLM_3293 putative iron chelate uptake ABC transporter, solute-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D CLM_0359 iron chelate uptake ABC transporter, FeCT family, solute-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D CLM_0803 ABC transporter, iron chelate uptake transporter FeCT family, periplasmic-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D CLM_1120 putative iron chelate uptake ABC transporter, solute-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D CLM_3291 iron chelate uptake ABC transporter, FeCT family, permease protein K02015 ABC.FEV.P; iron complex transport system permease protein
D CLM_1119 iron chelate uptake ABC transporter, FeCT family, permease protein K02015 ABC.FEV.P; iron complex transport system permease protein
D CLM_3292 iron chelate uptake ABC transporter, FeCT family, ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D CLM_0362 iron chelate uptake ABC transporter, FeCT family, ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D CLM_1118 iron chelate uptake ABC transporter, FeCT family, ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D CLM_1514 iron chelate uptake ABC transporter, FeCT family, solute-binding protein K25034 btuF; cobalamin transport system substrate-binding protein
D CLM_1515 iron chelate uptake ABC transporter, FeCT family, permease protein K25027 btuC; cobalamin transport system permease protein
D CLM_1516 iron chelate uptake ABC transporter, FeCT family, ATP-binding protein K25028 btuD; cobalamin transport system ATP-binding protein [EC:7.6.2.8]
D CLM_1538 manganese/zinc/iron chelate uptake ABC transporter, Mzt family, substrate-binding protein K09815 znuA; zinc transport system substrate-binding protein
D CLM_1536 manganese/zinc/iron chelate uptake ABC transporter, Mzt family, permease protein K09816 znuB; zinc transport system permease protein
D CLM_1537 manganese/zinc/iron chelate uptake ABC transporter, Mzt family, ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D CLM_1065 cbiN; cobalt transport protein K02009 cbiN; cobalt/nickel transport protein
D CLM_1066 cbiQ; cobalt ABC transporter, permease protein CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein
D CLM_1064 cbiM; cobalamin biosynthesis protein CbiM K02007 cbiM; cobalt/nickel transport system permease protein
D CLM_2469 BioY family protein K03523 bioY; biotin transport system substrate-specific component
D CLM_1052 BioY family protein K03523 bioY; biotin transport system substrate-specific component
D CLM_2188 putative ABC transporter, permease protein K16785 ecfT; energy-coupling factor transport system permease protein
D CLM_3915 cobalt transport permease, CbiQ family K16785 ecfT; energy-coupling factor transport system permease protein
D CLM_3917 putative cobalt ABC transporter, ATP-binding protein K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D CLM_3916 putative cobalt ABC transporter, ATP-binding protein K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D CLM_2189 ABC transporter, ATP-binding protein K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D CLM_2190 putative ABC transporter, permease protein K16925 ykoE; energy-coupling factor transport system permease protein
D CLM_3754 manganese/zinc/iron chelate uptake ABC transporter, Mzt family, substrate-binding protein K02077 ABC.ZM.S; zinc/manganese transport system substrate-binding protein
D CLM_2444 putative sodium extrusion protein NatB K09696 natB; sodium transport system permease protein
D CLM_2445 putative sodium extrusion ATP-binding protein NatA K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4]
D CLM_1824 putative lantibiotic ABC transporter, permease protein K20491 nisE; lantibiotic transport system permease protein
D CLM_1825 putative lantibiotic ABC transporter, permease protein K20492 nisG; lantibiotic transport system permease protein
D CLM_1823 antibiotic ABC transporter, ATP-binding protein K20490 nisF; lantibiotic transport system ATP-binding protein
D CLM_1556 putative membrane protein K25142 lnrN; linearmycin/streptolysin S transport system permease protein
D CLM_0581 sagI; drug ABC tranporter, ATP-binding/permease protein K25142 lnrN; linearmycin/streptolysin S transport system permease protein
D CLM_0587 ABC-type multidrug transport system, permease component K25142 lnrN; linearmycin/streptolysin S transport system permease protein
D CLM_1555 putative ABC transporter, permease protein K25143 lnrM; linearmycin/streptolysin S transport system permease protein
D CLM_0580 sagH; ABC transporter, ATP-binding/permease protein SagH K25143 lnrM; linearmycin/streptolysin S transport system permease protein
D CLM_0586 multidrug ABC transporter, permease K25143 lnrM; linearmycin/streptolysin S transport system permease protein
D CLM_0578 sagG; ABC transporter, ATP-binding protein SagG K25144 lnrL; linearmycin/streptolysin S transport system ATP-binding protein
D CLM_0585 ABC transporter, ATP-binding protein K25144 lnrL; linearmycin/streptolysin S transport system ATP-binding protein
D CLM_1554 ABC transporter, ATP-binding protein K25144 lnrL; linearmycin/streptolysin S transport system ATP-binding protein
D CLM_2590 putative membrane protein K19310 bcrB; bacitracin transport system permease protein
D CLM_2591 antibiotic ABC transporter, ATP-binding protein K19309 bcrA; bacitracin transport system ATP-binding protein
D CLM_1567 peptide ABC transporter, Pep4E family, permease protein K11632 bceB; bacitracin transport system permease protein
D CLM_1566 peptide ABC transporter, Pep4E family, ATP-binding protein K11631 bceA; bacitracin transport system ATP-binding protein
D CLM_0390 peptide ABC transporter, Pep4E family, permease protein K11636 yxdM; putative ABC transport system permease protein
D CLM_1572 peptide ABC transporter, Pep4E family, permease protein K11636 yxdM; putative ABC transport system permease protein
D CLM_0389 peptide ABC transporter, Pep4E family, ATP-binding protein K11635 yxdL; putative ABC transport system ATP-binding protein
D CLM_1571 peptide ABC transporter, Pep4E family, ATP-binding protein K11635 yxdL; putative ABC transport system ATP-binding protein
D CLM_3154 ABC transporter, permease protein K16919 ytrC_D; acetoin utilization transport system permease protein
D CLM_3155 ABC transporter, ATP-binding protein K16921 ytrB; acetoin utilization transport system ATP-binding protein
D CLM_3852 putative cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D CLM_3853 putative cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D CLM_0736 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D CLM_0836 putative drug resistance ABC-2 type transporter, permease protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D CLM_0928 putative membrane protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D CLM_1342 putative membrane protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D CLM_2004 ABC transporter, permease protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D CLM_3798 putative membrane protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D CLM_0916 putative membrane protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D CLM_0297 transmembrane protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D CLM_3313 conserved hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D CLM_2589 putative membrane protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D CLM_3772 putative membrane protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D CLM_0662 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D CLM_3314 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D CLM_1360 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D CLM_0924 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D CLM_0734 transcriptional regulator, LytR family K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D CLM_0735 bacitracin transport ATP-binding protein BcrA K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D CLM_0835 ABC Transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D CLM_0915 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D CLM_0927 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D CLM_0984 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D CLM_1400 bacitracin transport ATP-binding protein BcrA K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D CLM_3773 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D CLM_0296 bacitracin transport ATP-binding protein BcrA K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D CLM_3799 bacitracin ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D CLM_1114 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D CLM_2146 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D CLM_1341 bcrA; bacitracin ABC transporter, ATP-binding protein BcrA K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D CLM_2350 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D CLM_3792 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D CLM_3550 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D CLM_2168 ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein
D CLM_0697 putative ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein
D CLM_1048 ABC transporter, ATP-binding/permease protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D CLM_0934 putative ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein
D CLM_0623 efflux ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein
D CLM_1747 efflux ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein
D CLM_0130 putative macrolide efflux ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein
D CLM_2358 ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein
D CLM_0334 peptide ABC transporter, Pep4E family, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein
D CLM_0828 ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein
D CLM_2351 ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein
D CLM_0933 ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D CLM_1380 putative oligopeptide ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D CLM_0622 macrolide export ATP-binding/permease protein MacB K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D CLM_1746 peptide ABC transporter, Pep4E family, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D CLM_2167 ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D CLM_0698 ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D CLM_0129 putative macrolide efflux ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D CLM_2359 ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D CLM_0827 macrolide export ATP-binding/permease protein MacB K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D CLM_0333 peptide ABC transporter, Pep4E family, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D CLM_3205 ABC transporter, ATP-binding protein K09013 sufC; Fe-S cluster assembly ATP-binding protein
D CLM_2010 transporter, CPA2 family K23994 SLC9B1_2; solute carrier family 9B (sodium/hydrogen exchanger), member 1/2
D CLM_0427 MATE efflux family protein K26939 norM; MATE family, multidrug efflux pump
D CLM_0116 MATE efflux family protein K26939 norM; MATE family, multidrug efflux pump
D CLM_3208 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D CLM_2164 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D CLM_2334 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D CLM_3203 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D CLM_3147 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D CLM_2888 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D CLM_1261 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D CLM_0363 mate efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D CLM_1855 major facilitator family transporter K08177 oxlT; MFS transporter, OFA family, oxalate/formate antiporter
D CLM_2335 inner membrane transport protein YeaN K03449 MFS.CP; MFS transporter, CP family, cyanate transporter
D CLM_1231 glpT; glycerol-3-phosphate transporter K02445 glpT; MFS transporter, OPA family, glycerol-3-phosphate transporter
D CLM_3905 ptsI; phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D CLM_2690 ptsH; phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr
D CLM_0337 PTS system, glucose/glucoside family, IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D CLM_3201 ptbA; PTS system, glucose subfamily, IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D CLM_0348 PTS system, glucose family, IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D CLM_0330 PTS system, glucose family, EIIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D CLM_1502 ptsG; PTS system, glucose-specific, IIABC component K20118 ptsG; glucose PTS system EIICBA or EIICB component [EC:2.7.1.199]
D CLM_3120 PTS system, glucose family, IIABC component K20118 ptsG; glucose PTS system EIICBA or EIICB component [EC:2.7.1.199]
D CLM_3202 nagE; PTS system, N-acetylglucosamine-specific, IIBC component K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D CLM_0327 PTS system, maltose/glucose-specfic, IIBC component K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]
D CLM_0346 PTS system, glucose/maltose-specfic, IIBC component K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]
D CLM_1847 PTS system, glucose/glucoside family, IIBC component K20108 malT; maltose PTS system EIICB or EIICBA component [EC:2.7.1.208]
D CLM_1521 PTS system, IIBC components K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211]
D CLM_1020 PTS system, beta-glucoside-specific, IIABC component K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D CLM_0768 PTS system, beta-glucoside-specific, IIABC component K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D CLM_2204 treP; PTS system, trehalose-specific IIBC component K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201]
D CLM_0335 PTS system, glucose/glucoside family, IIBC component K02750 glvC; alpha-glucoside PTS system EIICB component [EC:2.7.1.208 2.7.1.-]
D CLM_3804 PTS system, lactose/cellobiose-specific family, IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D CLM_3805 PTS system, lactose/cellobiose-specific family, IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D CLM_3807 PTS system, lactose/cellobiose family, IIC component K02761 celB; cellobiose PTS system EIIC component
D CLM_3880 PTS system, glucitol/sorbitol-specific, IIA component K02781 srlB; glucitol/sorbitol PTS system EIIA component [EC:2.7.1.198]
D CLM_3881 PTS system, glucitol/sorbitol-specific, IIBC component K02782 srlE; glucitol/sorbitol PTS system EIIB component [EC:2.7.1.198]
D CLM_3882 PTS system, glucitol/sorbitol-specific, IIC component K02783 srlA; glucitol/sorbitol PTS system EIIC component
D CLM_3215 PTS system sorbose-specific iic component K02795 manY; mannose PTS system EIIC component
D CLM_3216 PTS system, mannose/fructose/sorbose family, IID component K02796 manZ; mannose PTS system EIID component
D CLM_2364 putative PTS system, L-ascorbate family, IIA component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D CLM_2363 putative PTS system, L-Ascorbate family, IIB component K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D CLM_2362 putative PTS system, L-ascorbate family, IIC component K03475 ulaA; ascorbate PTS system EIIC component
D CLM_3151 glycerol uptake facilitator protein K02440 glpF; glycerol uptake facilitator
D CLM_1107 formate/nitrite transporter family protein K02598 nirC; nitrite transporter
D CLM_0656 mscL; large conductance mechanosensitive channel protein K03282 mscL; large conductance mechanosensitive channel
D CLM_4136 mechanosensitive ion channel family protein K22044 ybiO; moderate conductance mechanosensitive channel
D CLM_1281 mgtE; magnesium transporter K06213 mgtE; magnesium transporter
D CLM_3018 motA; chemotaxis MotA protein K02556 motA; chemotaxis protein MotA
D CLM_2432 motA; chemotaxis protein MotA K02556 motA; chemotaxis protein MotA
D CLM_3017 motB; chemotaxis motB protein K02557 motB; chemotaxis protein MotB
D CLM_2431 motB; chemotaxis MotB protein K02557 motB; chemotaxis protein MotB
D CLM_2968 putative magnesium and cobalt transport protein CorA K03284 corA; magnesium transporter
D CLM_0092 transporter, CorA metal ion transporter family K03284 corA; magnesium transporter
D CLM_0875 conserved domain protein K08364 merP; periplasmic mercuric ion binding protein
D CLM_3305 transporter, HlyC/CorC family K03699 tlyC; magnesium and cobalt exporter, CNNM family
D CLM_3326 CBS/transporter-associated domain protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D CLM_0392 lrgA family protein K06518 cidA; holin-like protein
D CLM_0302 putative lysine-specific permease K11733 lysP; lysine-specific permease
D CLM_1829 arcD; arginine/ornithine antiporter K03758 arcD; arginine:ornithine antiporter / lysine permease
D CLM_2768 amino acid permease family protein K20265 gadC; glutamate:GABA antiporter
D CLM_0411 amino acid permease family protein K20265 gadC; glutamate:GABA antiporter
D CLM_2192 spore germination protein K06311 yndE; spore germination protein
D CLM_0167 spore germination protein K06311 yndE; spore germination protein
D CLM_0184 ZIP transporter family protein K07238 TC.ZIP; zinc transporter, ZIP family
D CLM_1328 zinc transporter, ZIP family K07238 TC.ZIP; zinc transporter, ZIP family
D CLM_1005 putative membrane protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D CLM_4081 putative membrane protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D CLM_3826 putative membrane protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D CLM_1785 conserved hypothetical protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D CLM_2408 gntP; gluconate permease K03299 TC.GNTP; gluconate:H+ symporter, GntP family
D CLM_1160 lctP; L-lactate permease K03303 lutP; lactate permease
D CLM_1287 choline/carnitine/betaine transporter K05020 opuD; glycine betaine transporter
D CLM_0776 gltS; sodium/glutamate symporter K03312 gltS; glutamate:Na+ symporter, ESS family
D CLM_2201 transporter, CPA2 family K11105 cvrA; potassium/hydrogen antiporter
D CLM_0429 transporter, CPA2 family K11105 cvrA; potassium/hydrogen antiporter
D CLM_3227 transporter, CPA2 family K26730 napA; Na+:H+ antiporter
D CLM_3541 potassium uptake protein, TrkH family K03498 trkH; trk/ktr system potassium uptake protein
D CLM_1494 trkH; Trk system potassium uptake protein TrkH K03498 trkH; trk/ktr system potassium uptake protein
D CLM_3540 potassium uptake protein, TrkA family K03499 trkA; trk/ktr system potassium uptake protein
D CLM_1493 trkA; Trk system potassium uptake protein TrkA K03499 trkA; trk/ktr system potassium uptake protein
D CLM_1716 uraA; uracil permease K02824 uraA; uracil permease
D CLM_3283 xanthine/uracil permease family protein K24206 uacT; uric acid transporter
D CLM_1902 xanthine/uracil permease family protein K06901 pbuG; adenine/guanine/hypoxanthine permease
D CLM_3297 xanthine/uracil permease family protein K06901 pbuG; adenine/guanine/hypoxanthine permease
D CLM_3617 xanthine/uracil permease family protein K06901 pbuG; adenine/guanine/hypoxanthine permease
D CLM_2223 xanthine/uracil permease family protein K06901 pbuG; adenine/guanine/hypoxanthine permease
D CLM_0635 chromate transporter protein K07240 chrA; chromate transporter
D CLM_0636 chromate transport protein K07240 chrA; chromate transporter
D CLM_3795 sulfate permease, SulP family K03321 TC.SULP; sulfate permease, SulP family
D CLM_3911 Na/Pi-cotransporter family protein/PhoU family protein K03324 yjbB; phosphate:Na+ symporter
D CLM_0907 putative arsenite-transporting ATPase ArsA K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D CLM_0909 arsB; arsenical-resistance protein K03325 ACR3; arsenite transporter
D CLM_1598 spoVB; stage V sporulation protein B K06409 spoVB; stage V sporulation protein B
D CLM_1597 spoVB; stage V sporulation protein B K06409 spoVB; stage V sporulation protein B
D CLM_4028 spoVB; stage V sporulation protein B K06409 spoVB; stage V sporulation protein B
D CLM_3501 mviN; integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase
D CLM_2879 auxin efflux carrier family protein K24180 mleP; malate permease and related proteins
D CLM_2309 transporter, AEC family K24180 mleP; malate permease and related proteins
D CLM_0226 putative membrane protein K23675 fmnP; riboflavin transporter
D CLM_0658 probable proton-coupled thiamine transporter YuaJ K16789 thiT; thiamine transporter
D CLM_2983 putative membrane protein K16788 niaX; niacin transporter
D CLM_1697 cell cycle protein, FtsW/RodA/SpoVE family K03588 ftsW; cell division protein FtsW
D CLM_1449 putative membrane protein K23242 mntP; manganese efflux pump family protein
D CLM_1443 conserved domain protein K15383 K15383; MtN3 and saliva related transmembrane protein
D CLM_1442 conserved domain protein K15383 K15383; MtN3 and saliva related transmembrane protein
D CLM_0321 DsbD family protein K06196 ccdA; cytochrome c-type biogenesis protein
D CLM_1976 putative cytochrome c-type biogenesis protein K06196 ccdA; cytochrome c-type biogenesis protein
D CLM_3051 capsular exopolysaccharide family protein K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3]
D CLM_3053 capsular polysaccharide biosynthsis protein K19420 epsA; protein tyrosine kinase modulator
D CLM_0957 feoA family protein K04758 feoA; ferrous iron transport protein A
D CLM_1237 feoA; ferrous ion transport protein A K04758 feoA; ferrous iron transport protein A
D CLM_1184 putative ferrous iron transport protein A K04758 feoA; ferrous iron transport protein A
D CLM_1185 feoA; ferrous iron transport protein A K04758 feoA; ferrous iron transport protein A
D CLM_1236 feoB; ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B
D CLM_1186 feoB; ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B
D CLM_0959 ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B
D CLM_0136 mgtC family protein K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein
C 02044 Secretion system [BR:cby02044]
D CLM_1491 type IV leader peptidase family protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D CLM_2124 putative type IV pilin K02650 pilA; type IV pilus assembly protein PilA
D CLM_2126 general secretion pathway protein E K02652 pilB; type IV pilus assembly protein PilB
D CLM_2125 bacterial type II secretion system protein F K02653 pilC; type IV pilus assembly protein PilC
D CLM_2118 hypothetical protein K02663 pilN; type IV pilus assembly protein PilN
D CLM_2843 pilT; twitching motility protein K02669 pilT; twitching motility protein PilT
D CLM_1704 YGGT family protein K02221 yggT; YggT family protein
D CLM_3373 putative comE operon protein 1 K02237 comEA; competence protein ComEA
D CLM_0190 cytidine/deoxycytidylate deaminase family protein K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D CLM_3364 ComEC/Rec2 family protein K02238 comEC; competence protein ComEC
D CLM_0494 metallo-beta-lactamase family protein K02238 comEC; competence protein ComEC
D CLM_0219 comF protein, homolog K02242 comFC; competence protein ComFC
D CLM_3011 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D CLM_0228 conserved hypothetical protein K04061 flhB2; flagellar biosynthesis protein
D CLM_3028 fliF; flagellar M-ring protein fliF K02409 fliF; flagellar M-ring protein FliF
D CLM_3026 fliH; flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D CLM_3025 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D CLM_3109 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D CLM_3015 flagellar biosynthesis domain protein K02418 fliO; flagellar protein FliO/FliZ
D CLM_3014 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D CLM_3013 fliQ; flagellar biosynthesis protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D CLM_3012 flagellar biosynthetic protein FliR/FlhB K13820 fliR-flhB; flagellar biosynthesis protein FliR/FlhB
D CLM_0221 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D CLM_3468 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D CLM_3962 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D CLM_3467 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D CLM_0281 secG; preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D CLM_3928 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D CLM_2742 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D CLM_2744 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D CLM_3472 yajC; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D CLM_4150 oxaA; membrane protein OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase
C 02042 Bacterial toxins [BR:cby02042]
D CLM_0897 botA; bontoxilysin A K06011 boNT; botulinum neurotoxin [EC:3.4.24.69]
D CLM_0896 ntnH; botulinum neurotoxin type A2, nontoxic-nonhemagglutinin component, NTNH K16623 ntnH; botulinum neurotoxin type non-toxic component
D CLM_1757 C4-dicarboxylate transporter/malic acid transport protein K11041 eta; exfoliative toxin A/B
D CLM_3305 transporter, HlyC/CorC family K03699 tlyC; magnesium and cobalt exporter, CNNM family
D CLM_3326 CBS/transporter-associated domain protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D CLM_0572 bacteriocin protoxin, streptolysin S family K11046 sagA; streptolysin S associated protein
D CLM_1688 hlyIII; hemolysin III K11068 hlyIII; hemolysin III
D CLM_1830 putative hemolysin III K11068 hlyIII; hemolysin III
D CLM_2998 putative phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3]
D CLM_1861 colG; collagenase K01387 colA; microbial collagenase [EC:3.4.24.3]
D CLM_2137 cloSI; clostripain K08587 cloSI; clostripain [EC:3.4.22.8]
C 02022 Two-component system [BR:cby02022]
D CLM_2831 sensor histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D CLM_2832 putative phosphate regulon DNA-binding response regulator K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D CLM_0420 DNA-binding response regulator K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D CLM_0354 sensor histidine kinase K07650 cssS; two-component system, OmpR family, sensor histidine kinase CssS [EC:2.7.13.3]
D CLM_0353 DNA-binding response regulator K07770 cssR; two-component system, OmpR family, response regulator CssR
D CLM_1116 DNA-binding response regulator K07668 vicR; two-component system, OmpR family, response regulator VicR
D CLM_1570 sensor histidine kinase K11633 yxdK; two-component system, OmpR family, sensor histidine kinase YxdK [EC:2.7.13.3]
D CLM_0387 sensor histidine kinase K11633 yxdK; two-component system, OmpR family, sensor histidine kinase YxdK [EC:2.7.13.3]
D CLM_1569 DNA-binding response regulator K11634 yxdJ; two-component system, OmpR family, response regulator YxdJ
D CLM_0386 DNA-binding response regulator K11634 yxdJ; two-component system, OmpR family, response regulator YxdJ
D CLM_2185 sensor histidine kinase K18345 vanSB; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3]
D CLM_2186 DNA-binding response regulator K18344 vanRB; two-component system, OmpR family, response regulator VanR
D CLM_0433 DNA-binding response regulator K18349 vanRC; two-component system, OmpR family, response regulator VanR
D CLM_2622 sensor histidine kinase K18940 arlS; two-component system, OmpR family, sensor histidine kinase ArlS [EC:2.7.13.3]
D CLM_2623 DNA-binding response regulator K18941 arlR; two-component system, OmpR family, response regulator ArlR
D CLM_2142 sensor histidine kinase K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3]
D CLM_1827 putative lantibiotic biosynthesis sensor histidine kinase K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3]
D CLM_1826 putative lantibiotic biosynthesis regulatory protein K20488 nisR; two-component system, OmpR family, lantibiotic biosynthesis response regulator NisR/SpaR
D CLM_2143 DNA-binding response regulator K20488 nisR; two-component system, OmpR family, lantibiotic biosynthesis response regulator NisR/SpaR
D CLM_1049 DNA-binding response regulator K02483 K02483; two-component system, OmpR family, response regulator
D CLM_2088 spo0A; sporulation transcription factor Spo0A K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A
D CLM_1340 sensor histidine kinase K07706 agrC; two-component system, LytTR family, sensor histidine kinase AgrC [EC:2.7.13.3]
D CLM_1338 DNA-binding response regulator, LytTr family K07707 agrA; two-component system, LytTR family, response regulator AgrA
D CLM_3743 sensor histidine kinase K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D CLM_3742 DNA-binding response regulator, LytTr family K02477 K02477; two-component system, LytTR family, response regulator
D CLM_3114 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D CLM_3112 cheY; chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D CLM_1153 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D CLM_3116 cheB; protein-glutamate methylesterase CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D CLM_1935 cheV; chemotaxis protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D CLM_0722 sensor histidine kinase K07717 glnK; two-component system, sensor histidine kinase GlnK [EC:2.7.13.3]
D CLM_0721 response regulator K07719 glnL; two-component system, response regulator GlnL
C 02035 Bacterial motility proteins [BR:cby02035]
D CLM_3114 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D CLM_3111 putative chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D CLM_3118 cheW; chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D CLM_1944 cheX; chemotaxis protein CheX K03409 cheX; chemotaxis protein CheX
D CLM_3113 cheC; chemotaxis protein CheC K03410 cheC; chemotaxis protein CheC
D CLM_3117 cheD; chemotaxis protein CheD K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44]
D CLM_3115 cheR; chemotaxis protein methyltransferase CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D CLM_3116 cheB; protein-glutamate methylesterase CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D CLM_3112 cheY; chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D CLM_1153 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D CLM_1935 cheV; chemotaxis protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D CLM_3175 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLM_0654 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLM_0810 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLM_0857 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLM_1529 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLM_1932 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLM_0469 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLM_0519 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLM_1761 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLM_1800 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLM_2136 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLM_3169 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLM_3191 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLM_3624 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLM_1905 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLM_2217 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLM_3026 fliH; flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D CLM_3025 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D CLM_3024 fliJ; flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ
D CLM_3015 flagellar biosynthesis domain protein K02418 fliO; flagellar protein FliO/FliZ
D CLM_3014 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D CLM_3013 fliQ; flagellar biosynthesis protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D CLM_3012 flagellar biosynthetic protein FliR/FlhB K13820 fliR-flhB; flagellar biosynthesis protein FliR/FlhB
D CLM_3011 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D CLM_3027 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D CLM_3110 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D CLM_3109 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D CLM_3028 fliF; flagellar M-ring protein fliF K02409 fliF; flagellar M-ring protein FliF
D CLM_3016 fliL; flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL
D CLM_3029 fliE; flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D CLM_3023 fliK; flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK
D CLM_3031 flgB; flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D CLM_3030 flgC; flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D CLM_3022 flgD; flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D CLM_3004 flagellar basal body rod protein K02391 flgF; flagellar basal-body rod protein FlgF
D CLM_3003 flagellar basal body rod protein K02392 flgG; flagellar basal-body rod protein FlgG
D CLM_3020 flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE
D CLM_3106 flgK; flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D CLM_3105 flgL; flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL
D CLM_3032 flagellin K02406 fliC; flagellin
D CLM_3060 fliC; flagellin K02406 fliC; flagellin
D CLM_3096 flagellin K02406 fliC; flagellin
D CLM_3097 flagellin K02406 fliC; flagellin
D CLM_3099 fliD; Flagellar hook-associated protein 2 K02407 fliD; flagellar hook-associated protein 2
D CLM_3100 fliS; flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS
D CLM_3007 fliA; RNA polymerase sigma factor for flagellar operon FliA K02405 fliA; RNA polymerase sigma factor FliA
D CLM_3018 motA; chemotaxis MotA protein K02556 motA; chemotaxis protein MotA
D CLM_2432 motA; chemotaxis protein MotA K02556 motA; chemotaxis protein MotA
D CLM_3017 motB; chemotaxis motB protein K02557 motB; chemotaxis protein MotB
D CLM_2431 motB; chemotaxis MotB protein K02557 motB; chemotaxis protein MotB
D CLM_3104 fliW; flagellar assembly factor FliW K13626 fliW; flagellar assembly factor FliW
D CLM_3108 regulator of flagellin synthesis FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
D CLM_3102 flaG family protein K06603 flaG; flagellar protein FlaG
D CLM_3019 flagellar protein FlbD K02385 flbD; flagellar protein FlbD
D CLM_3010 flhF; flagellar biosynthesis protein FlhF K02404 flhF; flagellar biosynthesis protein FlhF
D CLM_3009 flhG; flagellar biosynthesis protein FlhG K04562 flhG; flagellar biosynthesis protein FlhG
D CLM_2843 pilT; twitching motility protein K02669 pilT; twitching motility protein PilT
D CLM_2124 putative type IV pilin K02650 pilA; type IV pilus assembly protein PilA
D CLM_2126 general secretion pathway protein E K02652 pilB; type IV pilus assembly protein PilB
D CLM_2125 bacterial type II secretion system protein F K02653 pilC; type IV pilus assembly protein PilC
D CLM_1491 type IV leader peptidase family protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D CLM_2118 hypothetical protein K02663 pilN; type IV pilus assembly protein PilN
C 03037 Cilium and associated proteins [BR:cby03037]
D CLM_2010 transporter, CPA2 family K23994 SLC9B1_2; solute carrier family 9B (sodium/hydrogen exchanger), member 1/2
C 04812 Cytoskeleton proteins [BR:cby04812]
D CLM_3398 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D CLM_0207 mbl; Mbl protein K03569 mreB; rod shape-determining protein MreB and related proteins
D CLM_2839 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D CLM_2840 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D CLM_3394 minC; septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D CLM_3393 minD; septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D CLM_3392 minE; cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor
D CLM_4144 soj; sporulation initiation inhibitor protein soj K03496 parA; chromosome partitioning protein
D CLM_4143 stage 0 sporulation protein J K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D CLM_4145 parB family protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:cby04147]
D CLM_2202 hsp90; heat shock protein K04079 HSP90A; molecular chaperone HtpG
D CLM_0280 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D CLM_0276 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D CLM_0277 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D CLM_3834 pykA; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D CLM_1376 dipeptidase family protein K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D CLM_3732 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D CLM_3354 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D CLM_3712 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D CLM_3729 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D CLM_3950 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu
D CLM_3964 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu
D CLM_3349 HIT family protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D CLM_1489 HIT family protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D CLM_1754 ldh; L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D CLM_3612 thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D CLM_3927 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D CLM_3465 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D CLM_2222 phosphoribosyl transferase domain protein K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D CLM_3034 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D CLM_3035 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D CLM_3282 hydA; dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
D CLM_3150 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D CLM_4056 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CLM_1071 hemB; porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D CLM_1283 D-isomer specific 2-hydroxyacid dehydrogenase family protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D CLM_3270 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D CLM_0819 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CLM_1875 acoL; TPP-dependent acetoin dehydrogenase complex, E3 component, dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CLM_3609 electron transfer flavoprotein, alpha subunit/FixB family protein K03522 fixB; electron transfer flavoprotein alpha subunit
D CLM_0278 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
C 02048 Prokaryotic defense system [BR:cby02048]
D CLM_0795 putative type I restriction-modification system, R subunit K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D CLM_2294 type III restriction protein res subunit K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D CLM_0793 restriction modification system DNA specificity domain protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D CLM_2295 restriction modification system DNA specificity domain protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D CLM_0792 type I restriction modification system M subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D CLM_2296 N-6 DNA methylase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D CLM_2538 D12 class N6 adenine-specific DNA methyltransferase superfamily K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D CLM_3496 modification methylase family protein K07317 K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D CLM_1654 HNH endonuclease domain protein K07451 mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]
D CLM_2962 putative restriction endonuclase K07448 mrr; restriction system protein
D CLM_3858 PemK family protein K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D CLM_0637 PemK family protein K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D CLM_3859 conserved hypothetical protein K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI
D CLM_2839 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D CLM_3398 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D CLM_0207 mbl; Mbl protein K03569 mreB; rod shape-determining protein MreB and related proteins
D CLM_3137 DNA topoisomerase, GyrA/ParC subunit family K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D CLM_3138 DNA topoisomerase, GyrB/ParE subunit family K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D CLM_2875 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D CLM_1333 aminotransferase, class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels [BR:cby04040]
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules
C 01504 Antimicrobial resistance genes [BR:cby01504]
D CLM_2310 tetP; tetracycline resistance protein TetP K18220 tetM; ribosomal protection tetracycline resistance protein
D CLM_3236 florfenicol/chloramphenicol resistance protein K15632 cfr; 23S rRNA (adenine-C8)-methyltransferase [EC:2.1.1.224]
D CLM_0655 ABC transporter, ATP-binding protein K18231 msr; macrolide transport system ATP-binding/permease protein
D CLM_3237 drug resistance ABC transporter, RA2 family, ATP-binding protein K19350 lsa; lincosamide and streptogramin A transport system ATP-binding/permease protein
D CLM_2238 catB; chloramphenicol acetyltransferase K19271 catA; chloramphenicol O-acetyltransferase type A [EC:2.3.1.28]
D CLM_0727 chloramphenicol acetyltransferase family protein K19271 catA; chloramphenicol O-acetyltransferase type A [EC:2.3.1.28]
D CLM_1026 chloramphenicol acetyltransferase K00638 catB; chloramphenicol O-acetyltransferase type B [EC:2.3.1.28]
D CLM_2407 fosX; fosfomycin resistance protein FosX K21252 fosX; fosfomycin resistance protein FosX
D CLM_0800 putative beta-lactamase-inducing penicillin-binding protein K02172 blaR1; bla regulator protein blaR1
D CLM_0799 blaI; penicillinase repressor K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D CLM_0798 beta-lactamase K17836 penP; beta-lactamase class A [EC:3.5.2.6]
D CLM_2185 sensor histidine kinase K18345 vanSB; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3]
D CLM_2186 DNA-binding response regulator K18344 vanRB; two-component system, OmpR family, response regulator VanR
D CLM_1189 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D CLM_0717 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D CLM_0433 DNA-binding response regulator K18349 vanRC; two-component system, OmpR family, response regulator VanR
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:cby00537]
D CLM_1376 dipeptidase family protein K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:cby03100]
D CLM_0014 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D CLM_3994 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D CLM_0487 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D CLM_0027 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CLM_3675 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CLM_3683 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CLM_3691 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CLM_0031 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CLM_3671 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CLM_3987 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D CLM_0493 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D CLM_3986 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D CLM_3554 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D CLM_4104 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D CLM_4108 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D CLM_4113 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D CLM_0090 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D CLM_3551 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D CLM_0236 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D CLM_3680 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D CLM_3689 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D CLM_4107 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D CLM_4115 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D CLM_4110 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D CLM_0562 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D CLM_3552 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CLM_3685 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CLM_3677 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CLM_3672 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CLM_3676 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CLM_3692 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CLM_3684 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CLM_3966 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CLM_3681 tRNA-His K14226 tRNA-His; tRNA His
D CLM_3690 tRNA-His K14226 tRNA-His; tRNA His
D CLM_0488 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D CLM_3992 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D CLM_4017 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CLM_4020 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CLM_3678 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CLM_3687 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CLM_3408 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CLM_3450 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CLM_3682 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CLM_3674 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CLM_0055 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CLM_3688 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CLM_0062 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CLM_3679 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CLM_0013 tRNA-Met K14230 tRNA-Met; tRNA Met
D CLM_3995 tRNA-Met K14230 tRNA-Met; tRNA Met
D CLM_4014 tRNA-Met K14230 tRNA-Met; tRNA Met
D CLM_4018 tRNA-Met K14230 tRNA-Met; tRNA Met
D CLM_4015 tRNA-Met K14230 tRNA-Met; tRNA Met
D CLM_4016 tRNA-Met K14230 tRNA-Met; tRNA Met
D CLM_4019 tRNA-Met K14230 tRNA-Met; tRNA Met
D CLM_0071 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D CLM_3553 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D CLM_0082 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D CLM_3673 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D CLM_3693 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D CLM_4042 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D CLM_0024 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CLM_0026 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CLM_0023 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CLM_0025 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CLM_0035 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CLM_0210 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D CLM_4103 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D CLM_0213 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D CLM_3965 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D CLM_3751 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D CLM_0211 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D CLM_0214 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D CLM_0212 tRNA-Val K14237 tRNA-Val; tRNA Val
D CLM_4106 tRNA-Val K14237 tRNA-Val; tRNA Val
D CLM_4114 tRNA-Val K14237 tRNA-Val; tRNA Val
D CLM_4109 tRNA-Val K14237 tRNA-Val; tRNA Val
D CLM_3555 tRNA-Val K14237 tRNA-Val; tRNA Val
D CLM_3369 tRNA-Sec K14238 tRNA-Sec; tRNA Sec
D CLM_0050 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CLM_0065 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CLM_3993 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CLM_0486 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CLM_0057 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CLM_4001 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CLM_0077 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CLM_0084 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CLM_0008 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CLM_0087 rrl; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CLM_0011 rrl; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CLM_0012 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CLM_3997 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CLM_0069 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CLM_3988 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CLM_0492 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CLM_0088 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CLM_0061 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CLM_0081 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CLM_0054 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CLM_0036 srpB; Bacterial signal recognition particle RNA K01983 ffs; SRP RNA
D CLM_3327 Bacterial RNase P class A K01978 rnpB; M1 RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D CLM_2409 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase K22024 pdxA2; 4-phospho-D-threonate 3-dehydrogenase / 4-phospho-D-erythronate 3-dehydrogenase [EC:1.1.1.408 1.1.1.409]
D CLM_1871 acoA; TPP-dependent acetoin dehydrogenase complex, E1 component, alpha subunit K21416 acoA; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha [EC:1.1.1.-]
D CLM_1872 acoB; TPP-dependent acetoin dehydrogenase complex, E1 component, beta subunit K21417 acoB; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta [EC:1.1.1.-]
D CLM_3721 acyl-CoA dehydrogenase family protein K24016 acdA; 3-(aryl)acrylate reductase [EC:1.3.8.15]
D CLM_0606 ceo; N(5)-(carboxyethyl)ornithine synthase K00298 ceo; N5-(carboxyethyl)ornithine synthase [EC:1.5.1.24]
D CLM_2982 metallo-beta-lactamase family protein/flavodoxin K22405 fprA1_2; NADH oxidase (H2O-forming) [EC:1.6.3.4]
D CLM_1565 putative methionine-S-sulfoxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D CLM_2141 msrA; peptide-methionine (S)-S-oxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D CLM_2583 msrB; methionine-R-sulfoxide reductase K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D CLM_0593 putative thiol peroxidase K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D CLM_0999 conserved hypothetical protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D CLM_3769 superoxide reductase K05919 dfx; superoxide reductase [EC:1.15.1.2]
D CLM_1942 ferritin family protein K02217 ftnA; ferritin [EC:1.16.3.2]
D CLM_1885 oxidoreductase, NAD/FAD-binding K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D CLM_3739 oxidoreductase, NAD-binding K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D CLM_0908 arsenate reductase ArsC K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4]
D CLM_0903 arsenate reductase family protein K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4]
D CLM_0889 arsenate reductase family protein K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4]
D CLM_1421 grdA; glycine reductase complex component A, selenocysteine-containing K10670 grdA; glycine/sarcosine/betaine reductase complex component A [EC:1.21.4.2 1.21.4.3 1.21.4.4]
D CLM_1420 grdA; glycine reductase complex component A, selenocysteine-containing K10670 grdA; glycine/sarcosine/betaine reductase complex component A [EC:1.21.4.2 1.21.4.3 1.21.4.4]
D CLM_1415 grdE; glycine reductase, subunits ABC K10671 grdE; glycine reductase complex component B subunit alpha and beta [EC:1.21.4.2]
D CLM_1416 grdB; glycine reductase, selenoprotein B K10672 grdB; glycine reductase complex component B subunit gamma [EC:1.21.4.2]
D CLM_1423 grdD; glycine reductase complex component C, alpha subunit K21576 grdD; glycine/sarcosine/betaine reductase complex component C subunit alpha [EC:1.21.4.2 1.21.4.3 1.21.4.4]
D CLM_1422 grdC; glycine reductase complex component C, beta subunit K21577 grdC; glycine/sarcosine/betaine reductase complex component C subunit beta [EC:1.21.4.2 1.21.4.3 1.21.4.4]
D CLM_0138 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4]
D CLM_1157 putative anaerobic ribonucleoside-triphosphate reductase activating protein K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4]
D CLM_3596 glycyl-radical enzyme activating family protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D CLM_3626 pflA; pyruvate formate-lyase activating enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D CLM_4072 radical SAM domain protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D CLM_4050 radical SAM domain protein K04070 pflX; putative pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D CLM_2325 glycyl-radical enzyme activating family protein K20037 cutD; choline trimethylamine-lyase activating enzyme [EC:1.97.1.-]
D CLM_1001 nitroreductase family protein K15976 K15976; putative NAD(P)H nitroreductase [EC:1.-.-.-]
D CLM_0724 cfa; cyclopropane-fatty-acyl-phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D CLM_1719 putative methyltransferase K07444 ypsC; putative N6-adenine-specific DNA methylase [EC:2.1.1.-]
D CLM_1274 maa; maltose O-acetyltransferase K00661 maa; maltose O-acetyltransferase [EC:2.3.1.79]
D CLM_2369 O-acetyltransferase family protein K00661 maa; maltose O-acetyltransferase [EC:2.3.1.79]
D CLM_2464 acetyltransferase, GNAT family K03826 yiaC; putative acetyltransferase [EC:2.3.1.-]
D CLM_1007 acetyltransferase, GNAT family K03827 yjaB; putative acetyltransferase [EC:2.3.1.-]
D CLM_1134 acetyltransferase, GNAT family K03830 yafP; putative acetyltransferase [EC:2.3.1.-]
D CLM_2599 tgl; protein-glutamine gamma-glutamyltransferase K00686 tgl; protein-glutamine gamma-glutamyltransferase [EC:2.3.2.13]
D CLM_3507 glycosyl transferase, group 1 family K00754 bshA; L-malate glycosyltransferase [EC:2.4.1.-]
D CLM_0148 conserved hypothetical protein K06898 larB; pyridinium-3,5-biscarboxylic acid mononucleotide synthase [EC:2.5.1.143]
D CLM_3620 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D CLM_0445 apbE family protein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D CLM_2410 conserved hypothetical protein K22129 dtnK; D-threonate/D-erythronate kinase [EC:2.7.1.219 2.7.1.220]
D CLM_2209 pfkB; 1-phosphofructokinase K25602 tagK; D-tagatose-1-phosphate kinase [EC:2.7.1.234]
D CLM_2796 DAK2 domain protein K07030 fakA; fatty acid kinase [EC:2.7.2.18]
D CLM_4116 conserved hypothetical protein K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33]
D CLM_2673 DNA polymerase K02334 dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]
D CLM_3978 putative DNA-binding protein K07067 disA; diadenylate cyclase [EC:2.7.7.85]
D CLM_3897 conserved hypothetical protein TIGR00159 K18672 dacA; diadenylate cyclase [EC:2.7.7.85]
D CLM_1348 conserved hypothetical protein K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108]
D CLM_2889 putative phosphoenolpyruvate synthase K22579 rph; rifampicin phosphotransferase [EC:2.7.9.6]
D CLM_3493 spoIIAB; anti-sigma F factor K06379 spoIIAB; stage II sporulation protein AB (anti-sigma F factor) [EC:2.7.11.1]
D CLM_2970 hprK; HPr(Ser) kinase/phosphatase K06023 hprK; HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-]
D CLM_3981 ATP:guanido phosphotransferase domain protein K19405 mcsB; protein arginine kinase [EC:2.7.14.1]
D CLM_2400 hadA; 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) K20882 hadA; (R)-2-hydroxy-4-methylpentanoate CoA-transferase [EC:2.8.3.24]
D CLM_2454 putative phosphatase K23518 MACROD; O-acetyl-ADP-ribose deacetylase [EC:3.1.1.106]
D CLM_1311 thioesterase family protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D CLM_4013 spoIIE; stage II sporulation protein E K06382 spoIIE; stage II sporulation protein E [EC:3.1.3.16]
D CLM_3052 exopolysaccharide biosynthesis protein K01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48]
D CLM_2912 conserved hypothetical protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D CLM_4128 DHH family protein K22927 gdpP; cyclic-di-AMP phosphodiesterase [EC:3.1.4.59]
D CLM_3344 putative hydrolase K07037 pgpH; cyclic-di-AMP phosphodiesterase PgpH [EC:3.1.4.-]
D CLM_0121 hydrolase, TatD family K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D CLM_0123 primase homolog K05985 rnmV; ribonuclease M5 [EC:3.1.26.8]
D CLM_3233 prophage LambdaCh01, N-acetylmuramoyl-L-alanine amidase K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLM_2597 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D CLM_2985 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D CLM_1010 putative peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D CLM_2810 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D CLM_3497 polysaccharide deacetylase family protein K01567 pdaA; peptidoglycan-N-acetylmuramic acid deacetylase [EC:3.5.1.-]
D CLM_3376 putative endoribonuclease L-PSP K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D CLM_2179 putative endoribonuclease L-PSP K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D CLM_3601 ATPase, AAA family K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D CLM_0186 low molecular weight protein tyrosine phosphatase K20201 ywlE; protein arginine phosphatase [EC:3.9.1.2]
D CLM_0266 splB; spore photoproduct lyase K03716 splB; spore photoproduct lyase [EC:4.1.99.14]
D CLM_2257 myosin-cross-reactive antigen family protein K10254 ohyA; oleate hydratase [EC:4.2.1.53]
D CLM_3862 carbohydrate kinase family protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D CLM_2399 (R)-2-hydroxyglutaryl-CoA dehydratase, alpha subunit family K20025 hadB; (R)-2-hydroxyisocaproyl-CoA dehydratase alpha subunit [EC:4.2.1.157]
D CLM_2398 hgdB; (R)-2-hydroxyglutaryl-CoA dehydratase, beta subunit K20026 hadC; (R)-2-hydroxyisocaproyl-CoA dehydratase beta subunit [EC:4.2.1.157]
D CLM_3723 fldB; R-phenyllactate dehydratase, B subunit K23110 fldB; (R)-3-(aryl)lactoyl-CoA dehydratase alpha subunit [EC:4.2.1.175]
D CLM_3722 fldC; R-phenyllactate dehydratase, C subunit K23111 fldC; (R)-3-(aryl)lactoyl-CoA dehydratase beta subunit [EC:4.2.1.175]
D CLM_3284 dpaL; diaminopropionate ammonia-lyase K01751 E4.3.1.15; diaminopropionate ammonia-lyase [EC:4.3.1.15]
D CLM_2326 formate acetyltransferase K20038 cutC; choline trimethylamine-lyase [EC:4.3.99.4]
D CLM_1334 conserved hypothetical protein TIGR00268 K06864 larE; pyridinium-3,5-biscarboxylic acid mononucleotide sulfurtransferase [EC:4.4.1.37]
D CLM_0147 conserved hypothetical protein TIGR00268 K06864 larE; pyridinium-3,5-biscarboxylic acid mononucleotide sulfurtransferase [EC:4.4.1.37]
D CLM_0146 conserved hypothetical protein K09121 larC; pyridinium-3,5-bisthiocarboxylic acid mononucleotide nickel chelatase [EC:4.99.1.12]
D CLM_2393 hgdC_1; 2-hydroxyglutaryl-CoA dehydratase component A K23876 hgdC; (R)-2-hydroxyacyl-CoA dehydratese activating ATPase [EC:5.6.1.9]
D CLM_3724 fldI; R-phenyllactate dehydratase activator K23876 hgdC; (R)-2-hydroxyacyl-CoA dehydratese activating ATPase [EC:5.6.1.9]
D CLM_1794 hgdC; 2-hydroxyglutaryl-CoA dehydratase component A K23876 hgdC; (R)-2-hydroxyacyl-CoA dehydratese activating ATPase [EC:5.6.1.9]
D CLM_3655 hgdC_2; (R)-hydroxyglutaryl-CoA dehydratase activator K23876 hgdC; (R)-2-hydroxyacyl-CoA dehydratese activating ATPase [EC:5.6.1.9]
D CLM_0163 cphA; cyanophycin synthase (L-aspartate-adding) K03802 cphA; cyanophycin synthetase [EC:6.3.2.29 6.3.2.30]
D CLM_0437 electron transport complex, RnfABCDGE type, D subunit K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2]
D CLM_0436 electron transport complex, RnfABCDGE type, C subunit K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2]
D CLM_0441 electron transport complex, RnfABCDGE type, B subunit K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2]
D CLM_0633 calcium-translocating P-type ATPase, PMCA-type K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10]
D CLM_3000 calcium-translocating P-type ATPase, PMCA-type K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10]
D CLM_1780 cation-transporting ATPase, P-type K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10]
D CLM_0561 cadA; cadmium-exporting ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]
D CLM_3266 mgtA; magnesium-importing ATPase K01531 mgtA; P-type Mg2+ transporter [EC:7.2.2.14]
D CLM_1465 cation-transporting ATPase, P-type K12952 ctpE; cation-transporting P-type ATPase E [EC:7.2.2.-]
C 99981 Carbohydrate metabolism
D CLM_0042 sfsA; sugar fermentation stimulation protein K06206 sfsA; sugar fermentation stimulation protein A
C 99982 Energy metabolism
D CLM_1151 rubrerythrin family protein K19824 fprB; rubrerythrin
D CLM_3604 iron-sulfur cluster-binding protein K05337 fer; ferredoxin
D CLM_0132 iron-sulfur cluster-binding protein K05337 fer; ferredoxin
D CLM_0438 electron transport complex, RnfABCDGE type, G subunit K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G
D CLM_0439 electron transport complex, RnfABCDGE type, E subunit K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E
D CLM_0440 electron transport complex, RnfABCDGE type, A subunit K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A
D CLM_2874 nifU; FeS cluster assembly scaffold protein NifU K04488 iscU; nitrogen fixation protein NifU and related proteins
D CLM_1285 metallo-beta-lactamase family protein/flavodoxin K12264 norV; anaerobic nitric oxide reductase flavorubredoxin
D CLM_0809 hypothetical protein K02587 nifE; nitrogenase molybdenum-cofactor synthesis protein NifE
D CLM_3172 iron-sulfur cluster-binding protein K02574 napH; ferredoxin-type protein NapH
D CLM_3610 electron transfer flavoprotein, beta subunit/FixA family protein K03521 fixA; electron transfer flavoprotein beta subunit
C 99983 Lipid metabolism
D CLM_0268 DegV family protein K25232 fakB; fatty acid kinase fatty acid binding subunit
D CLM_0700 degV family protein K25232 fakB; fatty acid kinase fatty acid binding subunit
D CLM_1473 DegV family protein K25232 fakB; fatty acid kinase fatty acid binding subunit
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D CLM_2321 ethanolamine utilization protein EutJ family protein K04024 eutJ; ethanolamine utilization protein EutJ
D CLM_2323 GTP-binding protein, EutP/PduV family K04029 eutP; ethanolamine utilization protein EutP
D CLM_2318 ethanolamine utilization protein EutQ homolog K04030 eutQ; ethanolamine utilization protein EutQ
D CLM_2324 ethanolamine utilization protein EutS homolog K04031 eutS; ethanolamine utilization protein EutS
D CLM_0848 lactoylglutathione lyase K08234 yaeR; glyoxylase I family protein
D CLM_1702 conserved hypothetical protein TIGR00044 K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
D CLM_3319 putative cell wall hydrolase K01449 cwlJ; cell wall hydrolase
D CLM_3899 cell wall hydrolase family protein K01449 cwlJ; cell wall hydrolase
C 99987 Cofactor metabolism
D CLM_0029 conserved hypothetical protein K03688 ubiB; ubiquinone biosynthesis protein
C 99988 Secondary metabolism
C 99999 Others
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D CLM_3883 gutM; glucitol operon activator protein K02466 gutM; glucitol operon activator protein
D CLM_1561 major cold shock protein K03704 cspA; cold shock protein
D CLM_0340 cold shock protein K03704 cspA; cold shock protein
D CLM_2573 phage antirepressor protein K07741 antB; anti-repressor protein
D CLM_0224 RNA-binding protein K06959 tex; protein Tex
D CLM_2815 conserved hypothetical protein K09777 remA; extracellular matrix regulatory protein A
D CLM_0005 conserved hypothetical protein K24648 remB; extracellular matrix regulatory protein B
C 99974 Translation
D CLM_4021 putative general stress protein K07571 K07571; S1 RNA binding domain protein
D CLM_1254 metallo-beta-lactamase family protein K07576 K07576; metallo-beta-lactamase family protein
C 99975 Protein processing
D CLM_3982 UVR domain protein K19411 mcsA; protein arginine kinase activator
D CLM_3644 tig; trigger factor K03545 tig; trigger factor
D CLM_0284 smpB; SsrA-binding protein K03664 smpB; SsrA-binding protein
D CLM_1992 hypC; hydrogenase assembly chaperone HypC/HupF K04653 hypC; hydrogenase expression/formation protein HypC
D CLM_1991 hypD; hydrogenase expression/formation protein HypD K04654 hypD; hydrogenase expression/formation protein HypD
D CLM_1990 hypE; hydrogenase expression/formation protein HypE K04655 hypE; hydrogenase expression/formation protein HypE
D CLM_1993 hypF; [NiFe] hydrogenase maturation protein HypF K04656 hypF; hydrogenase maturation protein HypF
D CLM_2732 putative Mg chelatase K07391 comM; magnesium chelatase family protein
D CLM_3288 selenium-dependent molybdenum hydroxylase system protein, YqeB family K07402 xdhC; xanthine dehydrogenase accessory factor
D CLM_3289 putative xanthine dehydrogenase accessory factor K07402 xdhC; xanthine dehydrogenase accessory factor
C 99976 Replication and repair
D CLM_3399 DNA repair protein, RadC family K03630 radC; DNA repair protein RadC
D CLM_2733 conserved hypothetical protein TIGR00252 K07460 yraN; putative endonuclease
D CLM_3790 GIY-YIG domain protein K07461 K07461; putative endonuclease
D CLM_2731 dprA; DNA protecting protein DprA K04096 smf; DNA processing protein
D CLM_2664 putative phage terminase, small subunit K07474 xtmA; phage terminase small subunit
D CLM_2663 phage terminase, large subunit, pbsx family K06909 xtmB; phage terminase large subunit
D CLM_2529 phage terminase, large subunit, pbsx family K06909 xtmB; phage terminase large subunit
D CLM_2877 ATPase, AAA family K07478 ycaJ; putative ATPase
D CLM_2670 virulence-associated E domain protein K06919 K06919; putative DNA primase/helicase
D CLM_3212 transposase K07483 K07483; transposase
D CLM_0824 transposase, mutator type K07493 K07493; putative transposase
D CLM_3211 transposase ISLasa6a, IS3 family K07497 K07497; putative transposase
C 99979 Viral proteins
C 99998 Others
D CLM_1291 rhodanese domain protein K03972 pspE; phage shock protein E
D CLM_0038 conserved hypothetical protein TIGR00103 K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D CLM_1352 sugar transporter K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family
D CLM_2391 amino acid permease family protein K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D CLM_1550 amino acid permease family protein K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D CLM_0629 amino acid permease family protein K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D CLM_1774 amino acid/peptide transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D CLM_2473 amino acid/peptide transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D CLM_2372 amino acid/peptide transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D CLM_0435 sodium:solute symporter family protein K03307 TC.SSS; solute:Na+ symporter, SSS family
D CLM_4077 sodium:solute symporter family protein K03307 TC.SSS; solute:Na+ symporter, SSS family
D CLM_2248 sodium:neurotransmitter symporter family protein K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D CLM_2883 sodium:alanine symporter family protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D CLM_2884 sodium:alanine symporter family protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D CLM_3299 sodium:alanine symporter family protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D CLM_1454 sodium:alanine symporter family protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D CLM_1258 sodium:alanine symporter family protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D CLM_1259 sodium:alanine symporter family protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D CLM_1404 sodium:alanine symporter family protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D CLM_0954 brnQ; branched-chain amino acid transport system II carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family
D CLM_3727 branched-chain amino acid transport system II carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family
D CLM_0955 brnQ; branched-chain amino acid transport system II carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family
D CLM_0705 nucleoside transporter, NupC family K03317 TC.CNT; concentrative nucleoside transporter, CNT family
C 99978 Cell growth
D CLM_0773 putative scdA protein K07322 ytfE; regulator of cell morphogenesis and NO signaling
D CLM_0041 bofA; sigma-K factor processing regulatory protein BofA K06317 bofA; inhibitor of the pro-sigma K processing machinery
D CLM_1385 cotJB; CotJB protein K06333 cotJB; spore coat protein JB
D CLM_1386 cotJC; CotJC protein K06334 cotJC; spore coat protein JC
D CLM_4149 jag; jag protein K06346 jag; spoIIIJ-associated protein
D CLM_0114 spmA; spore maturation protein A K06373 spmA; spore maturation protein A
D CLM_0115 spmB; spore maturation protein B K06374 spmB; spore maturation protein B
D CLM_2580 conserved hypothetical protein K06376 spo0E; stage 0 sporulation regulatory protein
D CLM_3494 spoIIAA; anti-sigma F factor antagonist K06378 spoIIAA; stage II sporulation protein AA (anti-sigma F factor antagonist)
D CLM_2028 spoIIM; stage II sporulation protein M K06384 spoIIM; stage II sporulation protein M
D CLM_3360 stage II sporulation protein K06385 spoIIP; stage II sporulation protein P
D CLM_0169 spoIIR; stage II sporulation protein R K06387 spoIIR; stage II sporulation protein R
D CLM_2112 stage III sporulation protein AA K06390 spoIIIAA; stage III sporulation protein AA
D CLM_2111 stage III sporulation protein AB K06391 spoIIIAB; stage III sporulation protein AB
D CLM_2110 stage III sporulation protein AC K06392 spoIIIAC; stage III sporulation protein AC
D CLM_2109 stage III sporulation protein AD K06393 spoIIIAD; stage III sporulation protein AD
D CLM_2108 stage III sporulation protein AE K06394 spoIIIAE; stage III sporulation protein AE
D CLM_2107 spoIIIAF; stage III sporulation protein AF K06395 spoIIIAF; stage III sporulation protein AF
D CLM_2106 stage III sporulation protein AG K06396 spoIIIAG; stage III sporulation protein AG
D CLM_2105 stage III sporulation protein AH K06397 spoIIIAH; stage III sporulation protein AH
D CLM_2819 spoIVA; stage IV sporulation protein A K06398 spoIVA; stage IV sporulation protein A
D CLM_2578 resolvase K06400 spoIVCA; site-specific DNA recombinase
D CLM_2686 resolvase family protein K06400 spoIVCA; site-specific DNA recombinase
D CLM_3491 spoVAC; stage V sporulation protein AC K06405 spoVAC; stage V sporulation protein AC
D CLM_0316 spoVAC; stage V sporulation protein AC K06405 spoVAC; stage V sporulation protein AC
D CLM_3490 spoVAD; stage V sporulation protein AD K06406 spoVAD; stage V sporulation protein AD
D CLM_0315 spoVAD; stage V sporulation protein AD K06406 spoVAD; stage V sporulation protein AD
D CLM_3489 spoVAE; stage V sporulation protein AE K06407 spoVAE; stage V sporulation protein AE
D CLM_0314 spoVAE; stage V sporulation protein AE K06407 spoVAE; stage V sporulation protein AE
D CLM_4038 spoVG; stage V sporulation protein G K06412 spoVG; stage V sporulation protein G
D CLM_2695 spoVS; stage V sporulation protein S K06416 spoVS; stage V sporulation protein S
D CLM_3087 polysaccharide biosynthesis protein K07257 spsF; spore coat polysaccharide biosynthesis protein SpsF
D CLM_0939 small acid-soluble spore protein, H-type K06425 sspH; small acid-soluble spore protein H (minor)
D CLM_1392 small acid-soluble spore protein, H-type K06425 sspH; small acid-soluble spore protein H (minor)
D CLM_1190 tlp; small, acid-soluble spore protein tlp K06434 tlp; small acid-soluble spore protein (thioredoxin-like protein)
D CLM_0158 sporulation peptidase YabG K06436 yabG; spore coat assemly protein
D CLM_3345 sporulation protein YqfD K06438 yqfD; similar to stage IV sporulation protein
D CLM_2193 spore germination protein GerA K06295 gerKA; spore germination protein KA
D CLM_3163 gerAA; spore germination protein, GerAA K06295 gerKA; spore germination protein KA
D CLM_2195 germination protein, Ger(x)C family K06308 yfkR; spore germination protein
D CLM_0166 spore germination protein K06310 yndD; spore germination protein
D CLM_0171 ypeB; germination protein YpeB K06313 ypeB; spore germination protein
C 99993 Cell motility
D CLM_0796 tfoX domain protein K07343 tfoX; DNA transformation protein and related proteins
D CLM_3230 tfoX domain protein K07343 tfoX; DNA transformation protein and related proteins
C 99995 Signaling proteins
D CLM_0652 carbon starvation protein CstA K06200 cstA; carbon starvation protein
D CLM_2865 typA; GTP-binding protein TypA K06207 typA; GTP-binding protein
D CLM_0569 PhoH family protein K07175 phoH2; PhoH-like ATPase
C 99992 Structural proteins
D CLM_0899 LycA K07273 acm; lysozyme
D CLM_0128 putative macrolide efflux transporter, RND family, MFP subunit K02005 ABC.CD.TX; HlyD family secretion protein
C 99994 Others
D CLM_2826 phoU; phosphate transport system regulatory protein PhoU K02039 phoU; phosphate transport system protein
D CLM_0609 hemerythrin-like metal-binding domain protein K07216 hr; hemerythrin
D CLM_2158 molybdopterin cofactor synthesis/binding domain protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D CLM_1089 conserved hypothetical protein K26996 sdpI; immunity protein, SdpI family
B
B 09194 Poorly characterized
C 99996 General function prediction only
D CLM_2446 acetyltransferase, GNAT family K02348 elaA; ElaA protein
D CLM_3841 PHP domain protein K04477 ycdX; putative hydrolase
D CLM_0730 csaA; CsaA protein K06878 K06878; tRNA-binding protein
D CLM_1725 patatin-like phospholipase family protein K07001 K07001; NTE family protein
D CLM_0521 phospholipase family protein K07001 K07001; NTE family protein
D CLM_3088 HAD-superfamily hydrolase, subfamily IA, variant 1 K07025 K07025; putative hydrolase of the HAD superfamily
D CLM_3843 putative metal-dependent hydrolase, membrane-bound K07038 K07038; inner membrane protein
D CLM_3867 YihY family protein K07058 K07058; membrane protein
D CLM_0545 lemA family protein K03744 lemA; LemA protein
D CLM_0758 putative SanA protein K03748 sanA; SanA protein
D CLM_1146 putative phage infection protein K01421 yhgE; putative membrane protein
D CLM_1147 putative phage infection protein K01421 yhgE; putative membrane protein
D CLM_3322 putative phage infection protein K01421 yhgE; putative membrane protein
D CLM_1196 conserved hypothetical protein K08982 K08982; putative membrane protein
C 99997 Function unknown
D CLM_3469 radical SAM domain protein K06871 K06871; uncharacterized protein
D CLM_0615 radical SAM domain protein K06871 K06871; uncharacterized protein
D CLM_0691 radical SAM domain protein K06871 K06871; uncharacterized protein
D CLM_3252 radical SAM domain protein K06871 K06871; uncharacterized protein
D CLM_3777 radical SAM domain protein K06871 K06871; uncharacterized protein
D CLM_0546 putative lipoprotein K06872 K06872; uncharacterized protein
D CLM_0547 conserved hypothetical protein K06872 K06872; uncharacterized protein
D CLM_1215 conserved hypothetical protein K06888 K06888; uncharacterized protein
D CLM_1016 alpha/beta hydrolase K06889 K06889; uncharacterized protein
D CLM_0650 conserved hypothetical protein K06889 K06889; uncharacterized protein
D CLM_2242 conserved hypothetical protein K06889 K06889; uncharacterized protein
D CLM_0262 conserved hypothetical protein K06889 K06889; uncharacterized protein
D CLM_4117 CoA-binding protein K06929 K06929; uncharacterized protein
D CLM_2740 conserved hypothetical protein K06960 K06960; uncharacterized protein
D CLM_3968 conserved hypothetical protein K06962 K06962; uncharacterized protein
D CLM_2808 putative neutral zinc metallopeptidase K06973 K06973; uncharacterized protein
D CLM_0745 pyridoxamine 5'-phosphate oxidase family protein K07005 K07005; uncharacterized protein
D CLM_1128 putative nitroimidazole resistance protein NimA K07005 K07005; uncharacterized protein
D CLM_0982 nimA; nitroimidazole resistance protein NimA K07005 K07005; uncharacterized protein
D CLM_1474 5-nitroimidazole antibiotic resistance protein K07005 K07005; uncharacterized protein
D CLM_0742 putative 5-nitroimidazole antibiotic resistance protein K07005 K07005; uncharacterized protein
D CLM_3204 SufBD protein K07033 K07033; uncharacterized protein
D CLM_2239 conserved hypothetical protein K07069 K07069; uncharacterized protein
D CLM_2617 conserved hypothetical protein K07074 K07074; uncharacterized protein
D CLM_2405 conserved hypothetical protein K07078 K07078; uncharacterized protein
D CLM_1744 oxidoreductase, aldo/keto reductase family K07079 K07079; uncharacterized protein
D CLM_3833 oxidoreductase, aldo/keto reductase family K07079 K07079; uncharacterized protein
D CLM_3669 putative permease K07089 K07089; uncharacterized protein
D CLM_3258 putative membrane protein K07090 K07090; uncharacterized protein
D CLM_3621 phosphodiesterase, MJ0936 family K07095 K07095; uncharacterized protein
D CLM_3694 phosphodiesterase, MJ0936 family K07095 K07095; uncharacterized protein
D CLM_1152 phosphodiesterase, MJ0936 family K07095 K07095; uncharacterized protein
D CLM_0229 Ser/Thr protein phosphatase family protein K07099 K07099; uncharacterized protein
D CLM_0016 transcriptional regulator, biotin repressor family K07105 K07105; uncharacterized protein
D CLM_1818 putative membrane protein K07112 K07112; uncharacterized protein
D CLM_1822 putative membrane protein K07112 K07112; uncharacterized protein
D CLM_1816 putative membrane protein K07112 K07112; uncharacterized protein
D CLM_0344 conserved hypothetical protein K07118 K07118; uncharacterized protein
D CLM_2284 radical SAM domain protein K07129 K07129; uncharacterized protein
D CLM_3895 oxidoreductase, FAD-binding K07137 K07137; uncharacterized protein
D CLM_4122 pyridine nucleotide-disulphide oxidoreductase family protein K07137 K07137; uncharacterized protein
D CLM_4047 radical SAM protein K07139 K07139; uncharacterized protein
D CLM_3328 conserved hypothetical protein K07164 K07164; uncharacterized protein
D CLM_4151 conserved hypothetical protein TIGR00278 K08998 K08998; uncharacterized protein
D CLM_3347 GatB/Yqey domain protein K09117 K09117; uncharacterized protein
D CLM_0018 putative membrane protein K09118 K09118; uncharacterized protein
D CLM_0774 conserved hypothetical protein K09155 K09155; uncharacterized protein
D CLM_1136 conserved hypothetical protein K09702 K09702; uncharacterized protein
D CLM_0877 conserved hypothetical protein K09705 K09705; uncharacterized protein
D CLM_3119 conserved hypothetical protein K09749 K09749; uncharacterized protein
D CLM_3310 conserved hypothetical protein K09764 K09764; uncharacterized protein
D CLM_0232 conserved hypothetical protein K09766 K09766; uncharacterized protein
D CLM_3711 YaiI/YqxD family protein K09768 K09768; uncharacterized protein
D CLM_0638 conserved hypothetical protein K09770 K09770; uncharacterized protein
D CLM_0502 conserved hypothetical protein K09779 K09779; uncharacterized protein
D CLM_2689 conserved hypothetical protein K09779 K09779; uncharacterized protein
D CLM_2743 helix-turn-helix protein, YlxM/p13 family K09787 K09787; uncharacterized protein
D CLM_0743 conserved hypothetical protein K09790 K09790; uncharacterized protein
D CLM_1937 RNA-binding protein K00243 K00243; uncharacterized protein
D CLM_2976 conserved hypothetical protein K09931 K09931; uncharacterized protein
D CLM_1523 conserved hypothetical protein K09957 K09957; uncharacterized protein
D CLM_3802 conserved hypothetical protein K09963 K09963; uncharacterized protein
D CLM_1522 conserved hypothetical protein K09963 K09963; uncharacterized protein
D CLM_1375 conserved hypothetical protein K05967 K05967; uncharacterized protein
D CLM_1269 conserved hypothetical protein K01163 K01163; uncharacterized protein
D CLM_3383 conserved hypothetical protein K07584 ysxB; uncharacterized protein
D CLM_2713 conserved hypothetical protein K07742 ylxR; uncharacterized protein
!
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: May 14, 2024