+D GENES KO #

  KEGG Orthology (KO) - Oleidesulfovibrio alaskensis

% ! A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:dde00010] D Dde_1461 Glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D Dde_3597 phosphoglucose isomerase (PGI) K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Dde_1589 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D Dde_2069 Fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D Dde_1796 fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D Dde_3502 Fructose-bisphosphate aldolase K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D Dde_2341 fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Dde_3489 phospho-2-dehydro-3-deoxyheptonate aldolase K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10] D Dde_3490 phospho-2-dehydro-3-deoxyheptonate aldolase K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10] D Dde_1989 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D Dde_2342 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Dde_3736 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Dde_2630 Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D Dde_3004 phosphoglycerate mutase 1 family K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D Dde_1757 phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Dde_2732 Phosphoglycerate mutase K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Dde_0295 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Dde_1032 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Dde_2080 Pyruvate, water dikinase., Phosphoenolpyruvate--protein phosphotransferase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D Dde_0604 Pyruvate, water dikinase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D Dde_1690 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dde_3237 pyruvate ferredoxin/flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D Dde_0044 2-oxoisovalerate oxidoreductase, beta subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Dde_1639 2-oxoglutarate synthase K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Dde_1792 2-oxoacid:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Dde_1638 2-oxoglutarate synthase K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Dde_0045 2-oxoglutarate synthase K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Dde_1793 pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Dde_3523 Alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] D Dde_3534 Alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] D Dde_3062 Alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] D Dde_3126 Alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] D Dde_3121 Aldehyde dehydrogenase (NAD(+)) K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Dde_2823 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Dde_2317 Butyrate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Dde_3207 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Dde_3655 Aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D Dde_1695 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Dde_2945 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] C 00020 Citrate cycle (TCA cycle) [PATH:dde00020] D Dde_0520 putative cache sensor protein K05942 E2.3.3.3; citrate (Re)-synthase [EC:2.3.3.3] D Dde_1406 aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3] D Dde_3476 Isocitrate dehydrogenase (NADP(+)) K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D Dde_1690 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dde_0044 2-oxoisovalerate oxidoreductase, beta subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Dde_1639 2-oxoglutarate synthase K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Dde_1792 2-oxoacid:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Dde_1638 2-oxoglutarate synthase K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Dde_0045 2-oxoglutarate synthase K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Dde_1793 pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Dde_1637 2-oxoglutarate synthase K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3] D Dde_0046 Pyruvate/ketoisovalerate oxidoreductase K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3] D Dde_0043 Ferrodoxin-like protein K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3] D Dde_4026 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3] D Dde_2334 Succinyl-CoA synthetase, alpha/beta subunit (sucCD) K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D Dde_1257 succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12] D Dde_1256 fumarate reductase, iron sulfur protein K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12] D Dde_1258 Fumarate reductase respiratory complex K25996 frdC; succinate dehydrogenase subunit C D Dde_1255 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2] D Dde_3639 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2] D Dde_3638 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2] D Dde_1254 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2] D Dde_0240 Fumarate hydratase class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D Dde_2081 Pyruvate carboxylase K01958 PC; pyruvate carboxylase [EC:6.4.1.1] D Dde_3237 pyruvate ferredoxin/flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] C 00030 Pentose phosphate pathway [PATH:dde00030] D Dde_3597 phosphoglucose isomerase (PGI) K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Dde_3471 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D Dde_1324 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31] D Dde_3470 6-phosphogluconate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D Dde_2632 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D Dde_2631 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D Dde_1070 transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2] D Dde_2120 ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D Dde_1695 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Dde_2945 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Dde_3336 phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN K05774 phnN; ribose 1,5-bisphosphokinase [EC:2.7.4.23] D Dde_2126 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D Dde_2460 Aldehyde ferredoxin oxidoreductase K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5] D Dde_2943 Aldehyde ferredoxin oxidoreductase K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5] D Dde_2751 Glycerate kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D Dde_3502 Fructose-bisphosphate aldolase K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D Dde_2341 fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Dde_3489 phospho-2-dehydro-3-deoxyheptonate aldolase K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10] D Dde_3490 phospho-2-dehydro-3-deoxyheptonate aldolase K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10] D Dde_2069 Fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D Dde_1796 fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D Dde_1589 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] C 00040 Pentose and glucuronate interconversions [PATH:dde00040] D Dde_2042 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D Dde_1518 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Dde_1315 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Dde_2632 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D Dde_2521 protein of unknown function DUF1498 K09988 lyxA; D-lyxose ketol-isomerase [EC:5.3.1.15] D Dde_3569 Uncharacterized protein family UPF0066 K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17] C 00051 Fructose and mannose metabolism [PATH:dde00051] D Dde_2522 PfkB domain protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D Dde_2931 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D Dde_2945 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Dde_0432 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D Dde_2901 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D Dde_0425 GDP-L-fucose synthase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271] D Dde_2900 GDP-L-fucose synthase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271] D Dde_3569 Uncharacterized protein family UPF0066 K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17] D Dde_1589 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D Dde_2069 Fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D Dde_1796 fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D Dde_3502 Fructose-bisphosphate aldolase K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D Dde_2341 fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Dde_3489 phospho-2-dehydro-3-deoxyheptonate aldolase K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10] D Dde_3490 phospho-2-dehydro-3-deoxyheptonate aldolase K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10] D Dde_1989 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D Dde_2120 ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D Dde_1775 PTS system fructose subfamily IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D Dde_1777 hypothetical protein K02795 manY; mannose PTS system EIIC component D Dde_1091 PTS system mannose/fructose/sorbose family IID component K02796 manZ; mannose PTS system EIID component C 00052 Galactose metabolism [PATH:dde00052] D Dde_3655 Aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D Dde_3653 Galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D Dde_3652 galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D Dde_2187 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Dde_0427 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Dde_3691 dTDP-glucose 4,6-dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Dde_2888 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Dde_3686 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Dde_1518 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Dde_1315 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Dde_1695 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Dde_2945 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Dde_1461 Glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D Dde_1589 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D Dde_1776 PTS system sorbose subfamily IIB component K10984 agaB; galactosamine PTS system EIIB component [EC:2.7.1.-] C 00053 Ascorbate and aldarate metabolism [PATH:dde00053] D Dde_2042 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D Dde_0033 UDP-N-acetylglucosamine 4-epimerase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6] D Dde_3121 Aldehyde dehydrogenase (NAD(+)) K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Dde_3685 HpcH/HpaI aldolase K01630 garL; 2-dehydro-3-deoxyglucarate aldolase [EC:4.1.2.20] C 00500 Starch and sucrose metabolism [PATH:dde00500] D Dde_1518 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Dde_1315 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Dde_3694 glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33] D Dde_2286 glycogen/starch synthase, ADP-glucose type K00703 glgA; starch synthase [EC:2.4.1.21] D Dde_2285 1,4-alpha-glucan-branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D Dde_1424 alpha-glucan phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1] D Dde_3088 glycogen/starch/alpha-glucan phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1] D Dde_2353 trehalose synthase K05343 treS; maltose alpha-D-glucosyltransferase / alpha-amylase [EC:5.4.99.16 3.2.1.1] D Dde_0510 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25] D Dde_0881 glycosyl transferase group 1 K16148 glgM; alpha-maltose-1-phosphate synthase [EC:2.4.1.342] D Dde_0999 malto-oligosyltrehalose trehalohydrolase K01236 treZ; maltooligosyltrehalose trehalohydrolase [EC:3.2.1.141] D Dde_2061 trehalose-phosphatase K01087 otsB; trehalose 6-phosphate phosphatase [EC:3.1.3.12] D Dde_2060 Alpha,alpha-trehalose-phosphate synthase (UDP-forming) K16055 TPS; trehalose 6-phosphate synthase/phosphatase [EC:2.4.1.15 3.1.3.12] D Dde_1695 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Dde_2945 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Dde_1461 Glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D Dde_3597 phosphoglucose isomerase (PGI) K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Dde_2522 PfkB domain protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:dde00520] D Dde_2559 glycoside hydrolase family 3 domain protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D Dde_2522 PfkB domain protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D Dde_0502 glucosamine/fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Dde_1517 phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10] D Dde_0981 UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D Dde_0546 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Dde_1044 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D Dde_3255 UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing K08068 siaA; UDP-N-acetylglucosamine 2-epimerase (hydrolysing) [EC:3.2.1.183] D Dde_0358 UDP-glucose 4-epimerase K02473 wbpP; UDP-N-acetylglucosamine/UDP-N-acetylgalactosamine 4-epimerase [EC:5.1.3.7 5.1.3.-] D Dde_3187 nucleotide sugar dehydrogenase K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-] D Dde_3681 N-acetylneuraminate synthase K18430 legI; N,N'-diacetyllegionaminate synthase [EC:2.5.1.101] D Dde_3257 N-acylneuraminate cytidylyltransferase K18431 legF; CMP-N,N'-diacetyllegionaminic acid synthase [EC:2.7.7.82] D Dde_3060 UDP-glucuronate decarboxylase K08678 UXS1; UDP-glucuronate decarboxylase [EC:4.1.1.35] D Dde_1461 Glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D Dde_1695 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Dde_2945 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Dde_1518 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Dde_1315 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Dde_2042 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D Dde_3653 Galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D Dde_3652 galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] D Dde_2187 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Dde_0427 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Dde_3691 dTDP-glucose 4,6-dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Dde_2888 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Dde_3686 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Dde_0033 UDP-N-acetylglucosamine 4-epimerase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6] D Dde_1775 PTS system fructose subfamily IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D Dde_1777 hypothetical protein K02795 manY; mannose PTS system EIIC component D Dde_1091 PTS system mannose/fructose/sorbose family IID component K02796 manZ; mannose PTS system EIID component D Dde_3597 phosphoglucose isomerase (PGI) K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Dde_2931 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D Dde_0432 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D Dde_2901 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D Dde_0425 GDP-L-fucose synthase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271] D Dde_2900 GDP-L-fucose synthase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271] D Dde_3694 glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33] D Dde_3695 CDP-glucose 4,6-dehydratase K01709 rfbG; CDP-glucose 4,6-dehydratase [EC:4.2.1.45] C 00620 Pyruvate metabolism [PATH:dde00620] D Dde_2823 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Dde_2317 Butyrate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Dde_3207 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Dde_3237 pyruvate ferredoxin/flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D Dde_0044 2-oxoisovalerate oxidoreductase, beta subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Dde_1639 2-oxoglutarate synthase K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Dde_1792 2-oxoacid:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Dde_1638 2-oxoglutarate synthase K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Dde_0045 2-oxoglutarate synthase K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Dde_1793 pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Dde_1690 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dde_3279 acetaldehyde dehydrogenase (acetylating) K00132 E1.2.1.10; acetaldehyde dehydrogenase (acetylating) [EC:1.2.1.10] D Dde_3523 Alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] D Dde_3534 Alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] D Dde_3062 Alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] D Dde_3126 Alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] D Dde_3242 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D Dde_3241 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D Dde_1032 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Dde_1542 Acetyl-CoA carboxylase K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D Dde_2443 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] D Dde_2164 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] D Dde_3121 Aldehyde dehydrogenase (NAD(+)) K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Dde_3604 D-lactate dehydrogenase (cytochrome) K18930 dld; D-lactate dehydrogenase D Dde_0786 beta-lactamase domain protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D Dde_1253 malic protein NAD-binding protein K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D Dde_3637 malic protein NAD-binding protein K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D Dde_2081 Pyruvate carboxylase K01958 PC; pyruvate carboxylase [EC:6.4.1.1] D Dde_1255 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2] D Dde_3639 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2] D Dde_3638 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2] D Dde_1254 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2] D Dde_0240 Fumarate hydratase class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D Dde_1257 succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12] D Dde_1256 fumarate reductase, iron sulfur protein K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12] D Dde_1258 Fumarate reductase respiratory complex K25996 frdC; succinate dehydrogenase subunit C D Dde_2080 Pyruvate, water dikinase., Phosphoenolpyruvate--protein phosphotransferase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D Dde_0604 Pyruvate, water dikinase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D Dde_1174 malate synthase G K01638 aceB; malate synthase [EC:2.3.3.9] D Dde_3218 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D Dde_2049 2-isopropylmalate synthase/homocitrate synthase family protein K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:dde00630] D Dde_2823 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Dde_2317 Butyrate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Dde_3207 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Dde_1174 malate synthase G K01638 aceB; malate synthase [EC:2.3.3.9] D Dde_1406 aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3] D Dde_1087 D-lactate dehydrogenase (cytochrome) K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14] D Dde_3239 D-lactate dehydrogenase (cytochrome) K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14] D Dde_0182 D-lactate dehydrogenase (cytochrome) K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14] D Dde_3240 protein of unknown function DUF224 cysteine-rich region domain protein K11473 glcF; glycolate dehydrogenase iron-sulfur subunit [EC:1.1.99.14] D Dde_1085 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein K11473 glcF; glycolate dehydrogenase iron-sulfur subunit [EC:1.1.99.14] D Dde_1681 Phosphoglycerate dehydrogenase K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29] D Dde_2190 HAD-superfamily hydrolase, subfamily IA, variant 3 K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D Dde_2173 HAD-superfamily hydrolase, subfamily IA, variant 1 K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D Dde_0102 glutamine synthetase catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Dde_0104 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Dde_2432 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Dde_1692 Glycine dehydrogenase (decarboxylating) K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2] D Dde_1691 Glycine cleavage system P-protein K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2] D Dde_1996 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Dde_1690 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dde_1693 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D Dde_2751 Glycerate kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D Dde_0813 formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D Dde_3512 molybdopterin oxidoreductase Fe4S4 region K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D Dde_3513 formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D Dde_0717 formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D Dde_0812 Formate dehydrogenase beta subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit D Dde_3514 Formate dehydrogenase beta subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit D Dde_0718 formate dehydrogenase, beta subunit, putative K00124 fdoH; formate dehydrogenase iron-sulfur subunit D Dde_0652 HmcB, 40.1 kd protein in hmc operon K00124 fdoH; formate dehydrogenase iron-sulfur subunit D Dde_0680 cytochrome b/b6 domain-containing protein K00127 fdoI; formate dehydrogenase subunit gamma C 00640 Propanoate metabolism [PATH:dde00640] D Dde_2823 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Dde_2317 Butyrate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Dde_3207 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Dde_3242 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D Dde_3241 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D Dde_1690 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dde_1542 Acetyl-CoA carboxylase K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D Dde_0417 Acetylornithine transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D Dde_2334 Succinyl-CoA synthetase, alpha/beta subunit (sucCD) K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D Dde_1979 methylglyoxal synthase K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3] D Dde_0050 Alcohol dehydrogenase (NADP(+)) K08325 yqhD; NADP-dependent alcohol dehydrogenase [EC:1.1.-.-] C 00650 Butanoate metabolism [PATH:dde00650] D Dde_3128 butyrate kinase K00929 buk; butyrate kinase [EC:2.7.2.7] D Dde_3279 acetaldehyde dehydrogenase (acetylating) K00132 E1.2.1.10; acetaldehyde dehydrogenase (acetylating) [EC:1.2.1.10] D Dde_1257 succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12] D Dde_1256 fumarate reductase, iron sulfur protein K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12] D Dde_1258 Fumarate reductase respiratory complex K25996 frdC; succinate dehydrogenase subunit C D Dde_0417 Acetylornithine transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D Dde_3237 pyruvate ferredoxin/flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D Dde_0044 2-oxoisovalerate oxidoreductase, beta subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Dde_1639 2-oxoglutarate synthase K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Dde_1792 2-oxoacid:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Dde_1638 2-oxoglutarate synthase K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Dde_0045 2-oxoglutarate synthase K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Dde_1793 pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Dde_0398 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Dde_2168 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Dde_2167 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Dde_0399 amino acid-binding ACT domain protein K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Dde_3130 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] C 00660 C5-Branched dibasic acid metabolism [PATH:dde00660] D Dde_0398 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Dde_2168 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Dde_2167 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Dde_0399 amino acid-binding ACT domain protein K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Dde_3130 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Dde_2334 Succinyl-CoA synthetase, alpha/beta subunit (sucCD) K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D Dde_3219 homoaconitate hydratase family protein K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D Dde_3220 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D Dde_3222 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] C 00562 Inositol phosphate metabolism [PATH:dde00562] D Dde_1992 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D Dde_0416 myo-inositol catabolism protein K03337 iolB; 5-deoxy-glucuronate isomerase [EC:5.3.1.30] D Dde_1989 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:dde00190] D Dde_0642 NADH dehydrogenase (ubiquinone) K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9] D Dde_1257 succinate dehydrogenase or fumarate reductase, flavoprotein subunit K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12] D Dde_1256 fumarate reductase, iron sulfur protein K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12] D Dde_1258 Fumarate reductase respiratory complex K25996 frdC; succinate dehydrogenase subunit C D Dde_1827 Protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D Dde_1825 Cytochrome aa3-type quinol oxidase subunit IV K02277 coxD; cytochrome c oxidase subunit IV [EC:7.1.1.9] D Dde_1824 Cytochrome aa3-type quinol oxidase subunit III K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9] D Dde_1823 Cytochrome aa3-type quinol oxidase K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9] D Dde_1826 Cytochrome aa3-type quinol oxidase subunit II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9] D Dde_3204 cytochrome bd ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D Dde_3205 cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D Dde_1821 cytochrome c class I K08738 CYC; cytochrome c D Dde_0987 ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D Dde_0985 ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D Dde_0986 ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D Dde_0988 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D Dde_0984 ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D Dde_2700 ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D Dde_0990 H+transporting two-sector ATPase B/B' subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b D Dde_0989 ATP synthase subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b D Dde_2701 ATP synthase subunit c K02110 ATPF0C; F-type H+-transporting ATPase subunit c D Dde_1778 Inorganic diphosphatase K15986 ppaC; manganese-dependent inorganic pyrophosphatase [EC:3.6.1.1] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation in photosynthetic organisms C 00720 Carbon fixation pathways in prokaryotes C 00680 Methane metabolism [PATH:dde00680] D Dde_0813 formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D Dde_3512 molybdopterin oxidoreductase Fe4S4 region K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D Dde_3513 formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D Dde_0717 formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D Dde_0812 Formate dehydrogenase beta subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit D Dde_3514 Formate dehydrogenase beta subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit D Dde_0718 formate dehydrogenase, beta subunit, putative K00124 fdoH; formate dehydrogenase iron-sulfur subunit D Dde_0652 HmcB, 40.1 kd protein in hmc operon K00124 fdoH; formate dehydrogenase iron-sulfur subunit D Dde_0680 cytochrome b/b6 domain-containing protein K00127 fdoI; formate dehydrogenase subunit gamma D Dde_1211 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein K00125 fdhB; formate dehydrogenase (coenzyme F420) beta subunit [EC:1.17.98.3 1.8.98.6] D Dde_3528 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein K00125 fdhB; formate dehydrogenase (coenzyme F420) beta subunit [EC:1.17.98.3 1.8.98.6] D Dde_0475 Fe-only hydrogenase, large & small subunits, cytoplasmic K25123 hydA2; iron hydrogenase HydA2 [EC:1.12.7.-] D Dde_0474 Hydrogenase FeS protein, cytoplasmic K25124 hycB; FeS-containing electron transfer protein D Dde_3028 carbon-monoxide dehydrogenase, catalytic subunit K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4] D Dde_0476 Hydrogenase FeS protein, cytoplasmic K00196 cooF; anaerobic carbon-monoxide dehydrogenase iron sulfur subunit D Dde_2432 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Dde_1681 Phosphoglycerate dehydrogenase K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29] D Dde_2751 Glycerate kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D Dde_0295 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Dde_3502 Fructose-bisphosphate aldolase K11645 fbaB; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] D Dde_2341 fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Dde_3489 phospho-2-dehydro-3-deoxyheptonate aldolase K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10] D Dde_3490 phospho-2-dehydro-3-deoxyheptonate aldolase K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10] D Dde_2069 Fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D Dde_1796 fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D Dde_1589 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D Dde_0685 formylmethanofuran dehydrogenase subunit E region K11261 fwdE; formylmethanofuran dehydrogenase subunit E [EC:1.2.7.12] D Dde_1625 formylmethanofuran dehydrogenase subunit E region K11261 fwdE; formylmethanofuran dehydrogenase subunit E [EC:1.2.7.12] D Dde_1209 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein K03388 hdrA2; heterodisulfide reductase subunit A2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6] D Dde_3526 FAD dependent oxidoreductase K03388 hdrA2; heterodisulfide reductase subunit A2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6] D Dde_1208 CoB--CoM heterodisulfide reductase K03389 hdrB2; heterodisulfide reductase subunit B2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6] D Dde_3525 CoB--CoM heterodisulfide reductase K03389 hdrB2; heterodisulfide reductase subunit B2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6] D Dde_1207 heterodisulfide reductase, C subunit K03390 hdrC2; heterodisulfide reductase subunit C2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6] D Dde_3524 heterodisulfide reductase, C subunit K03390 hdrC2; heterodisulfide reductase subunit C2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6] D Dde_1210 methyl-viologen-reducing hydrogenase delta subunit K14127 mvhD; F420-non-reducing hydrogenase iron-sulfur subunit [EC:1.12.99.- 1.8.98.5 1.8.98.6] D Dde_3527 methyl-viologen-reducing hydrogenase delta subunit K14127 mvhD; F420-non-reducing hydrogenase iron-sulfur subunit [EC:1.12.99.- 1.8.98.5 1.8.98.6] D Dde_3242 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D Dde_3241 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D Dde_2823 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Dde_2317 Butyrate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Dde_3207 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Dde_2080 Pyruvate, water dikinase., Phosphoenolpyruvate--protein phosphotransferase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D Dde_0604 Pyruvate, water dikinase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D Dde_3004 phosphoglycerate mutase 1 family K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D Dde_1757 phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Dde_2732 Phosphoglycerate mutase K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Dde_3689 Phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] C 00910 Nitrogen metabolism [PATH:dde00910] D Dde_2641 hybrid cluster protein K05601 hcp; hydroxylamine reductase [EC:1.7.99.1] D Dde_0300 hypothetical protein K10535 hao; hydroxylamine dehydrogenase [EC:1.7.2.6] D Dde_1586 2-nitropropane dioxygenase NPD K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16] D Dde_1382 Glu/Leu/Phe/Val dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D Dde_0102 glutamine synthetase catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Dde_0104 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Dde_2086 Glutamate synthase (NADPH) K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D Dde_1250 glutamate synthase (NADPH), homotetrameric K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D Dde_3635 glutamate synthase (NADPH), homotetrameric K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D Dde_2979 carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1] C 00920 Sulfur metabolism [PATH:dde00920] D Dde_2265 sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4] D Dde_0123 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D Dde_3164 phosphoesterase RecJ domain protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] D Dde_1110 adenylylsulfate reductase, alpha subunit K00394 aprA; adenylylsulfate reductase, subunit A [EC:1.8.99.2] D Dde_1109 adenylylsulfate reductase, beta subunit K00395 aprB; adenylylsulfate reductase, subunit B [EC:1.8.99.2] D Dde_1789 phosphoadenosine phosphosulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10] D Dde_2390 nitrite and sulphite reductase 4Fe-4S region K00385 asrC; anaerobic sulfite reductase subunit C D Dde_0526 sulfite reductase, dissimilatory-type alpha subunit K11180 dsrA; dissimilatory sulfite reductase alpha subunit [EC:1.8.1.22] D Dde_0527 sulfite reductase, dissimilatory-type beta subunit K11181 dsrB; dissimilatory sulfite reductase beta subunit [EC:1.8.1.22] D Dde_2271 Inner membrane protein binds 2 heme b K27187 dsrM; [DsrC]-trisulfide reductase subunit M [EC:1.8.5.10] D Dde_2272 Cytoplasmic, binds 2 (4Fe-4S) K27188 dsrK; [DsrC]-trisulfide reductase subunit K [EC:1.8.5.10] D Dde_2273 Periplasmic (Sec) triheme cytochrome c K27189 dsrJ; [DsrC]-trisulfide reductase subunit J D Dde_2274 Periplasmic (Tat), binds 2(4Fe-4S) K27190 dsrO; [DsrC]-trisulfide reductase subunit O D Dde_2275 Integral membrane protein K27191 dsrP; [DsrC]-trisulfide reductase subunit P D Dde_0223 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K17218 sqr; sulfide:quinone oxidoreductase [EC:1.8.5.4] D Dde_1076 Nitrate reductase K08352 phsA; thiosulfate reductase / polysulfide reductase chain A [EC:1.8.5.5] D Dde_0682 Nitrate reductase K08352 phsA; thiosulfate reductase / polysulfide reductase chain A [EC:1.8.5.5] D Dde_2944 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein K08353 phsB; thiosulfate reductase electron transport protein D Dde_3081 Serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D Dde_3080 cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:dde00061] D Dde_1542 Acetyl-CoA carboxylase K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D Dde_2430 acyl carrier protein K02078 acpP; acyl carrier protein D Dde_2659 phosphopantetheine-binding protein K02078 acpP; acyl carrier protein D Dde_2294 (Acyl-carrier-protein) S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D Dde_2428 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D Dde_2431 3-oxoacyl-(acyl-carrier-protein) synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Dde_2660 Beta-ketoacyl-acyl-carrier-protein synthase I K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Dde_2658 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Dde_2429 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Dde_2657 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D Dde_1373 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D Dde_1006 Enoyl-(acyl-carrier-protein) reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D Dde_0193 Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Dde_1725 Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] C 00062 Fatty acid elongation C 00071 Fatty acid degradation [PATH:dde00071] D Dde_0193 Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Dde_1725 Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Dde_3523 Alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] D Dde_3534 Alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] D Dde_3062 Alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] D Dde_3126 Alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] D Dde_3121 Aldehyde dehydrogenase (NAD(+)) K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00073 Cutin, suberine and wax biosynthesis C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism [PATH:dde00561] D Dde_2751 Glycerate kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D Dde_3121 Aldehyde dehydrogenase (NAD(+)) K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Dde_1178 dihydroxyacetone kinase, DhaK subunit K05878 dhaK; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaK [EC:2.7.1.121] D Dde_1179 dihydroxyacetone kinase, L subunit K05879 dhaL; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaL [EC:2.7.1.121] D Dde_0410 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D Dde_2427 fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D Dde_0172 Membrane protein YgiH K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D Dde_2001 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D Dde_1136 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 00564 Glycerophospholipid metabolism [PATH:dde00564] D Dde_3178 NAD-dependent glycerol-3-phosphate dehydrogenase domain protein K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D Dde_3733 Glycerol-3-phosphate dehydrogenase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D Dde_0408 Glycerol-3-phosphate dehydrogenase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D Dde_0172 Membrane protein YgiH K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D Dde_2001 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D Dde_1136 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D Dde_0435 glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D Dde_1125 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D Dde_3217 CDP-diacylglycerol/serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D Dde_3216 phosphatidylserine decarboxylase related protein K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65] D Dde_2074 CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] D Dde_0641 phosphatidylglycerophosphatase A K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27] D Dde_0590 phospholipase D/Transphosphatidylase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] C 00565 Ether lipid metabolism C 00600 Sphingolipid metabolism C 00590 Arachidonic acid metabolism C 00591 Linoleic acid metabolism C 00592 alpha-Linolenic acid metabolism C 01040 Biosynthesis of unsaturated fatty acids D Dde_2141 lipolytic protein G-D-S-L family K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D Dde_0413 Arylesterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:dde00230] D Dde_1695 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Dde_2945 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Dde_2126 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D Dde_0334 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D Dde_1864 glucosamine 6-phosphate synthetase-like protein K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D Dde_0958 glucosamine 6-phosphate synthetase-like protein K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D Dde_3458 Phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13] D Dde_2835 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D Dde_2767 phosphoribosylglycinamide formyltransferase 2 K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21] D Dde_1764 Phosphoribosylformylglycinamidine synthase K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D Dde_3191 Phosphoribosylformylglycinamidine synthase K23270 purSL; phosphoribosylformylglycinamidine synthase subunit PurSL [EC:6.3.5.3] D Dde_1672 phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] D Dde_3459 phosphoribosylaminoimidazole carboxylase, catalytic subunit K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D Dde_1007 phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] D Dde_3011 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D Dde_0174 Phosphoribosylaminoimidazolecarboxamide formyltransferase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D Dde_0140 Adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D Dde_0789 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D Dde_2340 stationary-phase survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D Dde_1537 inosine guanosine and xanthosine phosphorylase family K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1] D Dde_3616 Multi-copper polyphenol oxidoreductase, laccase K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D Dde_2112 hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] D Dde_1471 inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D Dde_1439 Nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D Dde_0504 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D Dde_1506 Xanthine phosphoribosyltransferase K00769 gpt; xanthine phosphoribosyltransferase [EC:2.4.2.22] D Dde_1470 GMP synthase, large subunit K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D Dde_2719 guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8] D Dde_0113 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Dde_0277 anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D Dde_3016 anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D Dde_1569 (p)ppGpp synthetase I, SpoT/RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D Dde_2101 adenylate cyclase K05873 cyaB; adenylate cyclase, class 2 [EC:4.6.1.1] D Dde_0176 adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D Dde_1489 Adenosine kinase K00856 ADK; adenosine kinase [EC:2.7.1.20] D Dde_0136 adenine deaminase K01486 ade; adenine deaminase [EC:3.5.4.2] D Dde_0229 Conserved hypothetical protein CHP00282 K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16] D Dde_2028 Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D Dde_2453 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D Dde_1973 histidine triad (HIT) protein K19710 E2.7.7.53; ATP adenylyltransferase [EC:2.7.7.53] D Dde_2265 sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4] C 00240 Pyrimidine metabolism [PATH:dde00240] D Dde_0333 carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D Dde_3646 carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D Dde_2964 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D Dde_2965 dihydroorotase, multifunctional complex type K01465 URA4; dihydroorotase [EC:3.5.2.3] D Dde_0056 dihydroorotate dehydrogenase family protein K17828 pyrDI; dihydroorotate dehydrogenase (NAD+) catalytic subunit [EC:1.3.1.14] D Dde_0057 Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulfur cluster binding domain-containing protein K02823 pyrDII; dihydroorotate dehydrogenase electron transfer subunit D Dde_3012 orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D Dde_2718 orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D Dde_1129 uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D Dde_1439 Nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D Dde_2453 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D Dde_0640 maf protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-] D Dde_1765 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2] D Dde_1452 Cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D Dde_0789 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D Dde_2340 stationary-phase survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D Dde_1448 uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9] D Dde_2016 Uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D Dde_0229 Conserved hypothetical protein CHP00282 K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16] D Dde_0277 anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D Dde_3016 anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D Dde_0113 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Dde_2433 CMP/dCMP deaminase zinc-binding protein K01493 comEB; dCMP deaminase [EC:3.5.4.12] D Dde_2338 thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D Dde_1425 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D Dde_2321 thymidylate synthase, flavin-dependent K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] D Dde_1841 Serine 3-dehydrogenase K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:dde00250] D Dde_3596 Aspartate transaminase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Dde_1103 Aspartate transaminase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1] D Dde_1829 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D Dde_2284 Asparaginase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D Dde_1135 asparagine synthase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D Dde_2891 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D Dde_3317 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D Dde_3677 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D Dde_0842 asparagine synthase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D Dde_1553 alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1] D Dde_3552 Aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1] D Dde_1663 Aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1] D Dde_2531 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D Dde_2530 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D Dde_0176 adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D Dde_3011 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D Dde_2964 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D Dde_0417 Acetylornithine transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D Dde_2086 Glutamate synthase (NADPH) K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D Dde_1250 glutamate synthase (NADPH), homotetrameric K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D Dde_3635 glutamate synthase (NADPH), homotetrameric K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D Dde_1382 Glu/Leu/Phe/Val dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D Dde_0054 Proline dehydrogenase / 1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D Dde_0102 glutamine synthetase catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Dde_0104 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Dde_0333 carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D Dde_3646 carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D Dde_1764 Phosphoribosylformylglycinamidine synthase K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D Dde_0502 glucosamine/fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Dde_0334 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D Dde_1864 glucosamine 6-phosphate synthetase-like protein K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D Dde_0958 glucosamine 6-phosphate synthetase-like protein K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] C 00260 Glycine, serine and threonine metabolism [PATH:dde00260] D Dde_2048 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Dde_0254 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Dde_2731 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D Dde_0171 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D Dde_1657 Threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48] D Dde_2432 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Dde_1681 Phosphoglycerate dehydrogenase K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29] D Dde_2751 Glycerate kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D Dde_3004 phosphoglycerate mutase 1 family K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D Dde_1757 phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Dde_2732 Phosphoglycerate mutase K15635 apgM; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Dde_3689 Phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Dde_1841 Serine 3-dehydrogenase K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-] D Dde_1692 Glycine dehydrogenase (decarboxylating) K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2] D Dde_1691 Glycine cleavage system P-protein K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2] D Dde_1996 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Dde_1690 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dde_1693 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D Dde_3217 CDP-diacylglycerol/serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D Dde_3034 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D Dde_3111 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D Dde_3478 tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D Dde_0079 Tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D Dde_3479 tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] C 00270 Cysteine and methionine metabolism [PATH:dde00270] D Dde_3081 Serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D Dde_3080 cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D Dde_0276 Cystathionine beta-lyase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D Dde_2115 Methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Dde_2328 5-methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D Dde_1496 S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D Dde_3616 Multi-copper polyphenol oxidoreductase, laccase K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D Dde_1812 S-adenosylhomocysteine deaminase K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28] D Dde_0702 S-adenosylhomocysteine deaminase K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28] D Dde_0076 Methylthioribose salvage protein K08963 mtnA; methylthioribose-1-phosphate isomerase [EC:5.3.1.23] D Dde_3134 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D Dde_2048 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Dde_0254 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Dde_2731 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D Dde_3007 protein of unknown function DUF39 K23975 E2.8.1.16; L-aspartate semialdehyde sulfurtransferase [EC:2.8.1.16] D Dde_2146 NIL domain-containing protein K23976 K23976; L-aspartate semialdehyde sulfurtransferase ferredoxin D Dde_0065 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Dde_0255 aminotransferase class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Dde_3596 Aspartate transaminase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Dde_1103 Aspartate transaminase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1] D Dde_2581 pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family K05396 dcyD; D-cysteine desulfhydrase [EC:4.4.1.15] D Dde_3034 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D Dde_3111 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D Dde_3689 Phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] C 00280 Valine, leucine and isoleucine degradation [PATH:dde00280] D Dde_0065 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Dde_0255 aminotransferase class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Dde_1690 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dde_3121 Aldehyde dehydrogenase (NAD(+)) K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Dde_0417 Acetylornithine transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:dde00290] D Dde_3219 homoaconitate hydratase family protein K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D Dde_3220 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D Dde_3222 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] D Dde_0398 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Dde_2168 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Dde_2167 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Dde_0399 amino acid-binding ACT domain protein K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Dde_3130 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Dde_2166 Ketol-acid reductoisomerase / Dehydropantoate reductase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D Dde_0116 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D Dde_0065 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Dde_0255 aminotransferase class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Dde_3218 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D Dde_2049 2-isopropylmalate synthase/homocitrate synthase family protein K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00300 Lysine biosynthesis [PATH:dde00300] D Dde_2731 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D Dde_2048 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Dde_0254 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Dde_1797 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D Dde_2092 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D Dde_1426 acetylornithine and succinylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D Dde_1810 acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D Dde_1186 peptidase M20 K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D Dde_1798 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D Dde_1970 LL-diaminopimelate aminotransferase K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83] D Dde_1978 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D Dde_2664 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D Dde_1376 putative transcriptional regulator, GntR family K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-] D Dde_1037 UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D Dde_1038 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] C 00310 Lysine degradation [PATH:dde00310] D Dde_1690 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dde_0417 Acetylornithine transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D Dde_3041 lysine 2,3-aminomutase YodO family protein K01843 kamA; lysine 2,3-aminomutase [EC:5.4.3.2] D Dde_0189 lysine 2,3-aminomutase YodO family protein K01843 kamA; lysine 2,3-aminomutase [EC:5.4.3.2] D Dde_3121 Aldehyde dehydrogenase (NAD(+)) K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00220 Arginine biosynthesis [PATH:dde00220] D Dde_2532 ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D Dde_2531 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D Dde_2530 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D Dde_1764 Phosphoribosylformylglycinamidine synthase K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D Dde_0102 glutamine synthetase catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Dde_0104 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Dde_1382 Glu/Leu/Phe/Val dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D Dde_3596 Aspartate transaminase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Dde_1103 Aspartate transaminase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1] D Dde_2113 GCN5-related N-acetyltransferase K00619 argA; amino-acid N-acetyltransferase [EC:2.3.1.1] D Dde_1081 arginine biosynthesis bifunctional protein ArgJ K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1] D Dde_2015 acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8] D Dde_3455 N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] D Dde_1426 acetylornithine and succinylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] C 00330 Arginine and proline metabolism [PATH:dde00330] D Dde_0571 arginine decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19] D Dde_0574 agmatinase K01480 speB; agmatinase [EC:3.5.3.11] D Dde_0573 carboxynorspermidine decarboxylase K13747 nspC; carboxynorspermidine decarboxylase [EC:4.1.1.96] D Dde_3121 Aldehyde dehydrogenase (NAD(+)) K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Dde_0518 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D Dde_1440 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2] D Dde_0054 Proline dehydrogenase / 1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D Dde_2689 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D Dde_1633 gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] D Dde_3596 Aspartate transaminase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Dde_1103 Aspartate transaminase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1] C 00340 Histidine metabolism [PATH:dde00340] D Dde_3566 ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17] D Dde_3567 Phosphoribosyl-AMP cyclohydrolase K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19] D Dde_1465 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino) imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] D Dde_0332 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10] D Dde_0331 imidazoleglycerol phosphate synthase, cyclase subunit K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10] D Dde_1467 Imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] D Dde_1453 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Dde_1057 histidinol phosphate phosphatase HisJ family K04486 E3.1.3.15B; histidinol-phosphatase (PHP family) [EC:3.1.3.15] D Dde_1008 histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23] D Dde_3121 Aldehyde dehydrogenase (NAD(+)) K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00350 Tyrosine metabolism [PATH:dde00350] D Dde_3596 Aspartate transaminase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Dde_1103 Aspartate transaminase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1] D Dde_1453 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Dde_1124 Aromatic-L-amino-acid decarboxylase K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105] D Dde_3523 Alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] D Dde_3534 Alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] D Dde_3062 Alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] D Dde_3126 Alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] C 00360 Phenylalanine metabolism [PATH:dde00360] D Dde_1124 Aromatic-L-amino-acid decarboxylase K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105] D Dde_2084 Phenylacetate--CoA ligase K01912 paaK; phenylacetate-CoA ligase [EC:6.2.1.30] D Dde_3457 Phenylacetate--CoA ligase K01912 paaK; phenylacetate-CoA ligase [EC:6.2.1.30] D Dde_3596 Aspartate transaminase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Dde_1103 Aspartate transaminase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1] D Dde_1453 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Dde_0518 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] C 00380 Tryptophan metabolism [PATH:dde00380] D Dde_1690 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dde_1124 Aromatic-L-amino-acid decarboxylase K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105] D Dde_3121 Aldehyde dehydrogenase (NAD(+)) K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Dde_2331 indolepyruvate/phenylpyruvate decarboxylase K04103 ipdC; indolepyruvate decarboxylase [EC:4.1.1.74] D Dde_0518 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:dde00400] D Dde_3489 phospho-2-dehydro-3-deoxyheptonate aldolase K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10] D Dde_3490 phospho-2-dehydro-3-deoxyheptonate aldolase K16306 K16306; fructose-bisphosphate aldolase / 2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [EC:4.1.2.13 2.2.1.10] D Dde_3488 3-dehydroquinate synthase K11646 K11646; 3-dehydroquinate synthase II [EC:1.4.1.24] D Dde_1952 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10] D Dde_2609 shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71] D Dde_2728 Shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71] D Dde_3486 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] D Dde_2726 chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5] D Dde_3484 Anthranilate synthase K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D Dde_3483 glutamine amidotransferase of anthranilate synthase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D Dde_3482 anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18] D Dde_1054 N-(5'phosphoribosyl)anthranilate isomerase (PRAI) K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24] D Dde_3480 Phosphoribosylanthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24] D Dde_3481 Indole-3-glycerol-phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48] D Dde_3478 tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D Dde_0079 Tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D Dde_3479 tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D Dde_3487 prephenate dehydratase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51] D Dde_3485 Prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12] D Dde_3596 Aspartate transaminase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Dde_1103 Aspartate transaminase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1] D Dde_1453 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism [PATH:dde00410] D Dde_0417 Acetylornithine transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D Dde_3121 Aldehyde dehydrogenase (NAD(+)) K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D Dde_1498 pantoate/beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] C 00430 Taurine and hypotaurine metabolism [PATH:dde00430] D Dde_1641 Gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Dde_1553 alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1] D Dde_1382 Glu/Leu/Phe/Val dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D Dde_3241 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8] D Dde_3242 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D Dde_1273 pyruvate formate-lyase PFL K25261 islA; isethionate sulfite-lyase [EC:4.4.1.38] D Dde_1272 glycyl-radical enzyme activating protein family K25262 islB; isethionate sulfite-lyase activating enzyme C 00440 Phosphonate and phosphinate metabolism [PATH:dde00440] D Dde_3330 phosphonate metabolism K06164 phnI; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI [EC:2.7.8.37] D Dde_3328 phosphonate C-P lyase system protein PhnG K06166 phnG; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnG [EC:2.7.8.37] D Dde_3329 phosphonate C-P lyase system protein PhnH K06165 phnH; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnH [EC:2.7.8.37] D Dde_3333 phosphonate C-P lyase system protein PhnL K05780 phnL; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [EC:2.7.8.37] D Dde_3334 phosphonate metabolism protein PhnM K06162 phnM; alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase [EC:3.6.1.63] D Dde_3331 phosphonate metabolism PhnJ K06163 phnJ; alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase [EC:4.7.1.1] C 00450 Selenocompound metabolism [PATH:dde00450] D Dde_0276 Cystathionine beta-lyase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D Dde_2115 Methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Dde_2328 5-methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D Dde_2066 thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D Dde_0465 Thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D Dde_1203 Thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D Dde_2151 Thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D Dde_0210 Thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D Dde_2265 sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4] D Dde_2225 selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3] D Dde_3059 L-seryl-tRNA(Sec) selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1] D Dde_1594 Methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:dde00460] D Dde_1641 Gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Dde_2284 Asparaginase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D Dde_2432 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism [PATH:dde00470] D Dde_1547 Alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D Dde_3043 D-alanine--D-alanine ligase domain-containing protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Dde_0366 D-alanine/D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Dde_3042 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Dde_1764 Phosphoribosylformylglycinamidine synthase K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D Dde_2743 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D Dde_1040 UDP-N-acetylmuramoylalanine/D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D Dde_1177 Mandelate racemase/muconate lactonizing protein K19802 ycjG; L-Ala-D/L-Glu epimerase / N-acetyl-D-glutamate racemase [EC:5.1.1.20 5.1.1.25] D Dde_2581 pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family K05396 dcyD; D-cysteine desulfhydrase [EC:4.4.1.15] D Dde_1798 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D Dde_1978 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D Dde_2664 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] C 00480 Glutathione metabolism [PATH:dde00480] D Dde_1641 Gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Dde_0568 Leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D Dde_3476 Isocitrate dehydrogenase (NADP(+)) K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D Dde_3470 6-phosphogluconate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] D Dde_3471 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation C 00540 Lipopolysaccharide biosynthesis [PATH:dde00540] D Dde_1374 Acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D Dde_2986 UDP-3-0-acyl N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D Dde_1372 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D Dde_1375 protein of unknown function DUF1009 K09949 lpxI; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D Dde_2185 lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D Dde_2600 tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D Dde_0335 KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D Dde_1766 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D Dde_1767 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] D Dde_3647 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D Dde_3687 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D Dde_0367 Three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D Dde_1962 lipid A biosynthesis acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D Dde_2623 Protein of unknown function DUF2219 K09953 lpxR; lipid A 3-O-deacylase [EC:3.1.1.-] D Dde_2619 Phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] D Dde_0028 D-glycero-D-manno-heptose-7-phosphate 1-kinase K21344 rfaE1; D-glycero-beta-D-manno-heptose-7-phosphate kinase [EC:2.7.1.167] D Dde_1481 hydrolase, HAD-superfamily, subfamily IIIA K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] D Dde_3605 rfaE bifunctional protein K21345 rfaE2; D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase [EC:2.7.7.70] D Dde_3466 ADP-L-glycero-D-manno-heptose-6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20] D Dde_1433 glycosyl transferase family 9 K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24] D Dde_1482 glycosyl transferase family 9 K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24] D Dde_0592 glycosyl transferase group 1 K02844 waaG; UDP-glucose:(heptosyl)LPS alpha-1,3-glucosyltransferase [EC:2.4.1.-] C 00542 O-Antigen repeat unit biosynthesis C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:dde00541] D Dde_1518 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Dde_1315 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Dde_2187 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Dde_0427 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Dde_3691 dTDP-glucose 4,6-dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Dde_2888 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Dde_3686 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Dde_2042 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D Dde_0033 UDP-N-acetylglucosamine 4-epimerase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6] D Dde_2693 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Dde_2182 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D Dde_3696 polysaccharide biosynthesis domain-containing protein K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Dde_2930 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Dde_2183 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D Dde_3694 glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33] D Dde_3695 CDP-glucose 4,6-dehydratase K01709 rfbG; CDP-glucose 4,6-dehydratase [EC:4.2.1.45] D Dde_2931 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D Dde_0432 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D Dde_2901 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D Dde_0425 GDP-L-fucose synthase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271] D Dde_2900 GDP-L-fucose synthase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271] D Dde_0981 UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D Dde_3255 UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing K08068 siaA; UDP-N-acetylglucosamine 2-epimerase (hydrolysing) [EC:3.2.1.183] D Dde_3187 nucleotide sugar dehydrogenase K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-] D Dde_0358 UDP-glucose 4-epimerase K02473 wbpP; UDP-N-acetylglucosamine/UDP-N-acetylgalactosamine 4-epimerase [EC:5.1.3.7 5.1.3.-] C 00550 Peptidoglycan biosynthesis [PATH:dde00550] D Dde_0546 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Dde_1044 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D Dde_1043 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D Dde_1040 UDP-N-acetylmuramoylalanine/D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D Dde_1037 UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D Dde_3043 D-alanine--D-alanine ligase domain-containing protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Dde_0366 D-alanine/D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Dde_3042 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Dde_1038 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D Dde_1126 Undecaprenyl pyrophosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D Dde_1946 undecaprenol kinase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D Dde_1039 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D Dde_1042 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D Dde_2516 monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D Dde_3124 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Dde_0269 Bifunctional transpeptidase/transglycosylase K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28] D Dde_0993 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D Dde_1036 Peptidoglycan glycosyltransferase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] C 00552 Teichoic acid biosynthesis [PATH:dde00552] D Dde_1946 undecaprenol kinase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D Dde_0439 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase K21591 tarF; teichoic acid glycerol-phosphate transferase [EC:2.7.8.45] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis [PATH:dde00543] D Dde_0419 polysaccharide pyruvyl transferase K16710 wcaK; colanic acid/amylovoran biosynthesis protein WcaK/AmsJ D Dde_0872 membrane bound O-acyl transferase MBOAT family protein K19294 algI; alginate O-acetyltransferase complex protein AlgI D Dde_3081 Serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:dde00730] D Dde_1680 thiamine biosynthesis protein ThiC K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17] D Dde_2688 phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] D Dde_1557 UBA/THIF-type NAD/FAD binding protein K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73] D Dde_3079 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Dde_1556 thiazole biosynthesis protein ThiH K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19] D Dde_1148 hypothetical protein K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19] D Dde_2278 biotin and thiamin synthesis associated K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19] D Dde_2200 deoxyxylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D Dde_1555 thiazole biosynthesis family protein K03149 thiG; thiazole synthase [EC:2.8.1.10] D Dde_1378 hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50] D Dde_1379 Thiamine-phosphate pyrophosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D Dde_1558 thiamine-phosphate pyrophosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D Dde_3570 thiamine-monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16] D Dde_3170 ribosome biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D Dde_1216 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Dde_2028 Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D Dde_0637 hypothetical protein K10811 E2.5.1.2; thiamine pyridinylase [EC:2.5.1.2] C 00740 Riboflavin metabolism [PATH:dde00740] D Dde_2436 GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D Dde_2434 riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D Dde_1050 3,4-dihydroxy-2-butanone 4-phosphate synthase K02858 ribB; 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12] D Dde_2437 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] D Dde_2435 riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9] D Dde_3505 riboflavin biosynthesis protein RibF K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] D Dde_1378 hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50] D Dde_0150 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00750 Vitamin B6 metabolism [PATH:dde00750] D Dde_2742 Phosphomethylpyrimidine kinase type-1 K00868 pdxK; pyridoxine kinase [EC:2.7.1.35] D Dde_2283 4-hydroxythreonine-4-phosphate dehydrogenase K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262] D Dde_2043 pyridoxal phosphate biosynthetic protein PdxJ K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2] D Dde_0171 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] C 00760 Nicotinate and nicotinamide metabolism [PATH:dde00760] D Dde_1829 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D Dde_1830 quinolinate synthetase complex, A subunit K03517 nadA; quinolinate synthase [EC:2.5.1.72] D Dde_1831 nicotinate-nucleotide pyrophosphorylase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] D Dde_1537 inosine guanosine and xanthosine phosphorylase family K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1] D Dde_0789 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5] D Dde_2340 stationary-phase survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D Dde_1632 nicotinate (nicotinamide) nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] D Dde_2453 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D Dde_2091 NAD+ synthetase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1] D Dde_1458 CinA domain protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42] D Dde_2618 ATP-NAD/AcoX kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23] C 00770 Pantothenate and CoA biosynthesis [PATH:dde00770] D Dde_0398 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Dde_2168 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Dde_2167 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Dde_0399 amino acid-binding ACT domain protein K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Dde_3130 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Dde_2166 Ketol-acid reductoisomerase / Dehydropantoate reductase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D Dde_0116 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D Dde_1500 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] D Dde_1498 pantoate/beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D Dde_0294 putative transcriptional acitvator, Baf family K03525 coaX; type III pantothenate kinase [EC:2.7.1.33] D Dde_0039 phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5] D Dde_2453 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D Dde_1783 pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D Dde_2044 phosphopantetheine-protein transferase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7] D Dde_1604 4'-phosphopantetheinyl transferase K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-] D Dde_0065 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Dde_0255 aminotransferase class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Dde_3121 Aldehyde dehydrogenase (NAD(+)) K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00780 Biotin metabolism [PATH:dde00780] D Dde_2431 3-oxoacyl-(acyl-carrier-protein) synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Dde_2660 Beta-ketoacyl-acyl-carrier-protein synthase I K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Dde_2658 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Dde_2429 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Dde_2657 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D Dde_1373 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D Dde_1006 Enoyl-(acyl-carrier-protein) reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D Dde_2662 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D Dde_2656 adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D Dde_2663 dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3] D Dde_2277 Radical SAM domain protein K01012 bioB; biotin synthase [EC:2.8.1.6] D Dde_2655 biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6] D Dde_2082 biotin/acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D Dde_2654 biotin/acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] C 00785 Lipoic acid metabolism [PATH:dde00785] D Dde_2713 lipoate-protein ligase B K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181] D Dde_2714 lipoic acid synthetase K03644 lipA; lipoyl synthase [EC:2.8.1.8] D Dde_1690 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dde_1692 Glycine dehydrogenase (decarboxylating) K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2] D Dde_1691 Glycine cleavage system P-protein K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2] D Dde_1996 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Dde_1693 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein C 00790 Folate biosynthesis [PATH:dde00790] D Dde_2957 GTP cyclohydrolase I K09007 folE2; GTP cyclohydrolase IB [EC:3.5.4.16] D Dde_1216 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Dde_1969 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D Dde_1514 dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15] D Dde_3058 FolC bifunctional protein K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] D Dde_2436 GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D Dde_3617 Anthranilate synthase K01664 pabA; para-aminobenzoate synthetase component II [EC:2.6.1.85] D Dde_3618 Anthranilate synthase K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85] D Dde_3619 aminotransferase class IV K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38] D Dde_2197 queuosine biosynthesis protein QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D Dde_1616 metallo-beta-lactamase family protein K06897 K06897; 7,8-dihydropterin-6-yl-methyl-4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate synthase [EC:2.5.1.105] D Dde_0709 molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D Dde_0249 molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D Dde_0230 molybdenum cofactor synthesis domain protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D Dde_3228 molybdenum cofactor synthesis domain protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D Dde_3547 metal dependent phosphohydrolase K07141 mocA; molybdenum cofactor cytidylyltransferase [EC:2.7.7.76] D Dde_0708 Molybdopterin-guanine dinucleotide biosynthesis protein A K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77] D Dde_3116 Molybdopterin-guanine dinucleotide biosynthesis protein A K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77] C 00670 One carbon pool by folate [PATH:dde00670] D Dde_0296 Methylenetetrahydrofolate dehydrogenase (NADP(+)) K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D Dde_2432 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Dde_2835 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D Dde_0174 Phosphoribosylaminoimidazolecarboxamide formyltransferase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D Dde_0014 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D Dde_1225 Formyltetrahydrofolate dehydrogenase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D Dde_3397 Formyltetrahydrofolate dehydrogenase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D Dde_1996 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Dde_2115 Methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Dde_2321 thymidylate synthase, flavin-dependent K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] D Dde_2525 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D Dde_4006 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:dde00860] D Dde_2004 Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain-containing protein K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Dde_2648 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Dde_2025 glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70] D Dde_3180 glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D Dde_2576 Porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D Dde_2621 porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61] D Dde_2837 uroporphyrin-III C-methyltransferase K13542 cobA-hemD; uroporphyrinogen III methyltransferase / synthase [EC:2.1.1.107 4.2.1.75] D Dde_2023 siroheme synthase K24866 sirC; precorrin-2 dehydrogenase [EC:1.3.1.76] D Dde_2578 Putative heme biosynthesis protein K22225 ahbAB; siroheme decarboxylase [EC:4.1.1.111] D Dde_3179 Putative heme biosynthesis protein K22225 ahbAB; siroheme decarboxylase [EC:4.1.1.111] D Dde_2575 Radical SAM domain protein K22226 ahbC; Fe-coproporphyrin III synthase D Dde_2577 Radical SAM domain protein K22227 ahbD; AdoMet-dependent heme synthase [EC:1.3.98.6] D Dde_1827 Protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D Dde_3103 Sirohydrochlorin cobaltochelatase K02190 cbiK; sirohydrochlorin cobaltochelatase [EC:4.99.1.3] D Dde_2181 anaerobic cobalt chelatase K02190 cbiK; sirohydrochlorin cobaltochelatase [EC:4.99.1.3] D Dde_3107 precorrin-2 C20-methyltransferase K03394 cobI-cbiL; precorrin-2/cobalt-factor-2 C20-methyltransferase [EC:2.1.1.130 2.1.1.151] D Dde_3181 precorrin-3B C17-methyltransferase K13541 cbiGH-cobJ; cobalt-precorrin 5A hydrolase / cobalt-factor III methyltransferase / precorrin-3B C17-methyltransferase [EC:3.7.1.12 2.1.1.272 2.1.1.131] D Dde_0801 precorrin-4 C11-methyltransferase K05936 cobM; precorrin-4/cobalt-precorrin-4 C11-methyltransferase [EC:2.1.1.133 2.1.1.271] D Dde_0804 cobalamin (vitamin B12) biosynthesis CbiD protein K02188 cbiD; cobalt-precorrin-5B (C1)-methyltransferase [EC:2.1.1.195] D Dde_0803 precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit K00595 cobL-cbiET; precorrin-6B C5,15-methyltransferase / cobalt-precorrin-6B C5,C15-methyltransferase [EC:2.1.1.132 2.1.1.289 2.1.1.196] D Dde_0342 Precorrin-8X methylmutase K06042 cobH-cbiC; precorrin-8X/cobalt-precorrin-8 methylmutase [EC:5.4.99.61 5.4.99.60] D Dde_0343 cobyrinic acid a,c-diamide synthase K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11] D Dde_0529 Cobyrinic acid A,C-diamide synthase K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11] D Dde_2922 ATPase associated with various cellular activities AAA_5 K09882 cobS; cobaltochelatase CobS [EC:6.6.1.2] D Dde_3433 ATPase associated with various cellular activities AAA_5 K09882 cobS; cobaltochelatase CobS [EC:6.6.1.2] D Dde_1669 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D Dde_1030 Cobyric acid synthase K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10] D Dde_1529 cobalamin biosynthesis protein CobD K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10] D Dde_3495 cobalbumin biosynthesis protein K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62] D Dde_2704 cobalamin-5-phosphate synthase CobS K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26] D Dde_3777 nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21] D Dde_1401 Histidinol-phosphate transaminase K04720 cobD; threonine-phosphate decarboxylase [EC:4.1.1.81] D Dde_0133 Ferritin Dps family protein K03594 bfr; bacterioferritin [EC:1.16.3.1] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:dde00130] D Dde_1392 4-hydroxybenzoate polyprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D Dde_1323 Carboxylyase-related protein K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98] D Dde_0150 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D Dde_3185 ubiquinone/menaquinone biosynthesis methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201] D Dde_0796 protein of unknown function DUF178 K11782 mqnA; chorismate dehydratase [EC:4.2.1.151] D Dde_0798 FO synthase, subunit 2 K18285 mqnE; aminodeoxyfutalosine synthase [EC:2.5.1.120] D Dde_2963 S-adenosylhomocysteine deaminase K20810 mqnX; aminodeoxyfutalosine deaminase [EC:3.5.4.40] D Dde_3188 futalosine nucleosidase K11783 mqnB; futalosine hydrolase [EC:3.2.2.26] D Dde_0797 FO synthase, subunit 2 K11784 mqnC; cyclic dehypoxanthinyl futalosine synthase [EC:1.21.98.1] D Dde_0799 hypothetical protein K11785 mqnD; 5,8-dihydroxy-2-naphthoate synthase [EC:4.1.99.29] B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:dde00900] D Dde_2200 deoxyxylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D Dde_1123 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] D Dde_1726 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K12506 ispDF; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:2.7.7.60 4.6.1.12] D Dde_2125 4-diphosphocytidyl-2C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] D Dde_2207 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3] D Dde_0390 hydroxymethylbutenyl pyrophosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4] D Dde_0150 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D Dde_1991 NUDIX hydrolase K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2] D Dde_2201 Polyprenyl synthetase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] D Dde_3189 Trans-hexaprenyltranstransferase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D Dde_1126 Undecaprenyl pyrophosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D Dde_0070 Ste24 endopeptidase K06013 STE24; STE24 endopeptidase [EC:3.4.24.84] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation D Dde_3121 Aldehyde dehydrogenase (NAD(+)) K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00907 Pinene, camphor and geraniol degradation C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins D Dde_2631 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis [PATH:dde00523] D Dde_2693 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Dde_2182 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D Dde_3696 polysaccharide biosynthesis domain-containing protein K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Dde_2930 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Dde_2183 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 01054 Nonribosomal peptide structures C 01053 Biosynthesis of siderophore group nonribosomal peptides C 01055 Biosynthesis of vancomycin group antibiotics [PATH:dde01055] D Dde_0750 (S)-2-hydroxy-acid oxidase K16422 hmo; 4-hydroxymandelate oxidase [EC:1.1.3.46] D Dde_2182 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis C 00332 Carbapenem biosynthesis [PATH:dde00332] D Dde_2689 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D Dde_1633 gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] C 00261 Monobactam biosynthesis [PATH:dde00261] D Dde_0750 (S)-2-hydroxy-acid oxidase K16422 hmo; 4-hydroxymandelate oxidase [EC:1.1.3.46] D Dde_2265 sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4] D Dde_2048 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Dde_0254 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Dde_1797 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D Dde_2092 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:dde00521] D Dde_1461 Glucokinase K00845 glk; glucokinase [EC:2.7.1.2] D Dde_1695 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D Dde_2945 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Dde_1992 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D Dde_2693 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Dde_2182 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D Dde_3696 polysaccharide biosynthesis domain-containing protein K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Dde_2930 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Dde_2183 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 00524 Neomycin, kanamycin and gentamicin biosynthesis D Dde_1461 Glucokinase K00845 glk; glucokinase [EC:2.7.1.2] C 00525 Acarbose and validamycin biosynthesis [PATH:dde00525] D Dde_2693 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Dde_2182 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 00401 Novobiocin biosynthesis [PATH:dde00401] D Dde_3485 Prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12] D Dde_3596 Aspartate transaminase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Dde_1103 Aspartate transaminase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1] D Dde_1453 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis D Dde_3484 Anthranilate synthase K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D Dde_3483 glutamine amidotransferase of anthranilate synthase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] C 00333 Prodigiosin biosynthesis D Dde_2294 (Acyl-carrier-protein) S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D Dde_2658 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Dde_2429 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Dde_1006 Enoyl-(acyl-carrier-protein) reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics D Dde_2430 acyl carrier protein K02078 acpP; acyl carrier protein D Dde_2659 phosphopantetheine-binding protein K02078 acpP; acyl carrier protein C 00999 Biosynthesis of various plant secondary metabolites D Dde_1496 S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] C 00997 Biosynthesis of various other secondary metabolites B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation D Dde_3115 Carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] D Dde_3140 Carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] C 00627 Aminobenzoate degradation [PATH:dde00627] D Dde_0518 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D Dde_2443 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] D Dde_2164 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] D Dde_0150 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00364 Fluorobenzoate degradation C 00625 Chloroalkane and chloroalkene degradation [PATH:dde00625] D Dde_3523 Alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] D Dde_3534 Alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] D Dde_3062 Alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] D Dde_3126 Alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] D Dde_3121 Aldehyde dehydrogenase (NAD(+)) K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00361 Chlorocyclohexane and chlorobenzene degradation C 00623 Toluene degradation C 00622 Xylene degradation C 00633 Nitrotoluene degradation [PATH:dde00633] D Dde_0086 6,7-dihydropteridine reductase K10679 nfnB; nitroreductase / dihydropteridine reductase [EC:1.-.-.- 1.5.1.34] D Dde_2135 periplasmic (NiFeSe) hydrogenase, large subunit, selenocysteine-containing K06281 hyaB; hydrogenase large subunit [EC:1.12.99.6] D Dde_2134 hydrogenase (NiFe) small subunit HydA K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6] D Dde_3028 carbon-monoxide dehydrogenase, catalytic subunit K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4] D Dde_0476 Hydrogenase FeS protein, cytoplasmic K00196 cooF; anaerobic carbon-monoxide dehydrogenase iron sulfur subunit D Dde_0526 sulfite reductase, dissimilatory-type alpha subunit K11180 dsrA; dissimilatory sulfite reductase alpha subunit [EC:1.8.1.22] D Dde_0527 sulfite reductase, dissimilatory-type beta subunit K11181 dsrB; dissimilatory sulfite reductase beta subunit [EC:1.8.1.22] C 00642 Ethylbenzene degradation C 00643 Styrene degradation [PATH:dde00643] D Dde_0518 Amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] C 00791 Atrazine degradation C 00930 Caprolactam degradation C 00363 Bisphenol degradation C 00621 Dioxin degradation C 00626 Naphthalene degradation [PATH:dde00626] D Dde_3523 Alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] D Dde_3534 Alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] D Dde_3062 Alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] D Dde_3126 Alcohol dehydrogenase K00001 E1.1.1.1; alcohol dehydrogenase [EC:1.1.1.1] C 00624 Polycyclic aromatic hydrocarbon degradation C 00365 Furfural degradation C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:dde03020] D Dde_2997 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D Dde_2998 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D Dde_2231 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D Dde_0247 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] C 03022 Basal transcription factors C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:dde03010] D Dde_2011 RNA binding S1 domain protein K02945 RP-S1; small subunit ribosomal protein S1 D Dde_0507 ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D Dde_1133 ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D Dde_2251 ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D Dde_2232 ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D Dde_2240 ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D Dde_1412 ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D Dde_2262 ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D Dde_2243 ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D Dde_2608 ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D Dde_2258 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D Dde_2233 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D Dde_2263 ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D Dde_2234 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D Dde_2244 ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D Dde_3166 ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D Dde_1099 ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D Dde_2248 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D Dde_1411 ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D Dde_2253 ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D Dde_2031 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D Dde_2056 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D Dde_2993 ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D Dde_2254 ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D Dde_2257 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D Dde_2256 ribosomal protein L4/L1e K02926 RP-L4; large subunit ribosomal protein L4 D Dde_2245 ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D Dde_2242 ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D Dde_2995 ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D Dde_1410 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D Dde_2994 ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D Dde_2992 ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D Dde_2607 ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D Dde_2247 ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D Dde_2238 ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D Dde_2250 ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D Dde_2230 ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D Dde_2241 ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D Dde_1095 ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D Dde_2636 ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D Dde_2692 ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D Dde_2252 ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D Dde_2255 Ribosomal protein L25/L23 K02892 RP-L23; large subunit ribosomal protein L23 D Dde_2246 ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D Dde_2127 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 K02897 RP-L25; large subunit ribosomal protein L25 D Dde_2691 ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D Dde_2425 ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D Dde_2249 ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D Dde_2239 ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D Dde_2982 ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D Dde_4007 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D Dde_4010 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D Dde_2637 ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D Dde_2235 ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D Dde_R0001 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Dde_R0079 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Dde_R0020 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Dde_R0056 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Dde_R0004 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Dde_R0053 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Dde_R0023 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Dde_R0076 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Dde_R0082 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Dde_R0084 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Dde_R0087 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Dde_R0088 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:dde00970] D Dde_R0071 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Dde_R0081 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Dde_R0003 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Dde_R0077 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Dde_R0054 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Dde_R0022 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Dde_R0067 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Dde_R0006 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Dde_R0042 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Dde_R0035 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Dde_R0036 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Dde_R0037 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Dde_R0027 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Dde_R0028 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Dde_R0064 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Dde_R0066 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Dde_R0047 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D Dde_R0010 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Dde_R0043 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Dde_R0009 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Dde_R0068 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Dde_R0012 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Dde_R0046 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Dde_R0050 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Dde_R0048 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Dde_R0049 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Dde_R0061 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Dde_R0008 tRNA-His K14226 tRNA-His; tRNA His D Dde_R0002 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Dde_R0021 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Dde_R0055 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Dde_R0078 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Dde_R0014 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Dde_R0041 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Dde_R0045 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Dde_R0051 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Dde_R0074 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Dde_R0013 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Dde_R0072 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Dde_R0007 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Dde_R0025 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Dde_R0026 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Dde_R0044 tRNA-Met K14230 tRNA-Met; tRNA Met D Dde_R0039 tRNA-Met K14230 tRNA-Met; tRNA Met D Dde_R0040 tRNA-Met K14230 tRNA-Met; tRNA Met D Dde_R0031 tRNA-Met K14230 tRNA-Met; tRNA Met D Dde_R0080 tRNA-Met K14230 tRNA-Met; tRNA Met D Dde_R0073 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D Dde_R0069 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Dde_R0030 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Dde_R0032 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Dde_R0018 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Dde_R0058 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Dde_R0034 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Dde_R0015 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Dde_R0017 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Dde_R0019 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Dde_R0070 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Dde_R0059 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Dde_R0062 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Dde_R0063 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D Dde_R0060 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Dde_R0057 tRNA-Val K14237 tRNA-Val; tRNA Val D Dde_R0065 tRNA-Val K14237 tRNA-Val; tRNA Val D Dde_R0011 tRNA-Val K14237 tRNA-Val; tRNA Val D Dde_R0029 tRNA-Sec K14238 tRNA-Sec; tRNA Sec D Dde_2004 Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain-containing protein K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Dde_2648 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Dde_1020 glutamyl-tRNA(Gln) amidotransferase, A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D Dde_2615 glutamyl-tRNA(Gln) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D Dde_1021 glutamyl-tRNA(Gln) amidotransferase, C subunit K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D Dde_0626 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D Dde_2374 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Dde_0012 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Dde_0099 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D Dde_2034 glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D Dde_2033 glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D Dde_2639 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D Dde_0196 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D Dde_3059 L-seryl-tRNA(Sec) selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1] D Dde_2121 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D Dde_1594 Methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D Dde_0014 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D Dde_1225 Formyltetrahydrofolate dehydrogenase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D Dde_3397 Formyltetrahydrofolate dehydrogenase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D Dde_2839 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D Dde_2439 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Dde_2142 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D Dde_1365 Lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D Dde_2295 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Dde_2206 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D Dde_0011 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D Dde_2635 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D Dde_2634 phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D Dde_0228 Tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Dde_3607 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:dde03060] D Dde_2237 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D Dde_2990 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D Dde_1988 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D Dde_1818 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D Dde_1819 protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF D Dde_1817 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D Dde_2394 membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase D Dde_1082 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Dde_1100 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D Dde_R0089 ffs; SRP RNA; RNA component of signal recognition K01983 ffs; SRP RNA D Dde_0560 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Dde_2177 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA D Dde_1469 twin-arginine translocation protein, TatB subunit K03117 tatB; sec-independent protein translocase protein TatB D Dde_1468 Sec-independent protein translocase, TatC subunit K03118 tatC; sec-independent protein translocase protein TatC D Dde_2816 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D Dde_2143 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:dde04122] D Dde_3079 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Dde_1019 tRNA methyl transferase-like protein K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D Dde_0709 molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D Dde_2458 thiamineS protein K03636 moaD; sulfur-carrier protein D Dde_0249 molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D Dde_1554 thiamine biosynthesis protein ThiS K03154 thiS; sulfur carrier protein D Dde_3610 hypothetical protein K03154 thiS; sulfur carrier protein D Dde_1557 UBA/THIF-type NAD/FAD binding protein K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73] C 03050 Proteasome C 03018 RNA degradation [PATH:dde03018] D Dde_0537 ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12] D Dde_0295 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Dde_3167 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D Dde_2480 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D Dde_2598 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D Dde_0341 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D Dde_0152 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D Dde_2446 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D Dde_2130 transcription termination factor Rho K03628 rho; transcription termination factor Rho D Dde_0978 2,3 cyclic-nucleotide 2-phosphodiesterase K18682 rny; ribonucrease Y [EC:3.1.-.-] D Dde_1137 RNA-metabolising metallo-beta-lactamase K12574 rnj; ribonuclease J [EC:3.1.-.-] D Dde_1589 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D Dde_1023 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Dde_2473 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Dde_2966 metal dependent phosphohydrolase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] B B 09124 Replication and repair C 03030 DNA replication [PATH:dde03030] D Dde_0628 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Dde_2196 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Dde_0066 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Dde_0177 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Dde_2441 hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Dde_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Dde_1409 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D Dde_0907 DNA primase catalytic core domain-containing protein K02316 dnaG; DNA primase [EC:2.7.7.101] D Dde_2053 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D Dde_1921 DNA primase catalytic core domain-containing protein K02316 dnaG; DNA primase [EC:2.7.7.101] D Dde_1545 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Dde_2941 Ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D Dde_1094 Ribonuclease H K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D Dde_2093 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:dde03410] D Dde_1491 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D Dde_0514 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D Dde_0212 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D Dde_0542 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D Dde_3701 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D Dde_0551 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D Dde_2402 apurinic endonuclease Apn1 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D Dde_2715 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Dde_2093 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:dde03420] D Dde_2039 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D Dde_2486 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A D Dde_2096 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B D Dde_1014 excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C D Dde_3571 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Dde_2093 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Dde_1923 ERCC4 domain protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] D Dde_0905 ERCC4 domain protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] C 03430 Mismatch repair [PATH:dde03430] D Dde_1976 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Dde_2054 Smr protein/MutS2 K07456 mutS2; DNA mismatch repair protein MutS2 D Dde_3464 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Dde_3571 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Dde_2204 exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D Dde_2202 Exonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D Dde_2715 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Dde_1545 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Dde_2196 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Dde_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Dde_0066 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Dde_2441 hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Dde_0177 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Dde_0628 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Dde_2093 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03440 Homologous recombination [PATH:dde03440] D Dde_2715 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Dde_1545 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Dde_2035 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D Dde_0068 Recombination protein recR K06187 recR; recombination protein RecR D Dde_2373 recA protein K03553 recA; recombination protein RecA D Dde_2323 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D Dde_2322 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D Dde_2324 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D Dde_0906 UvrD/REP helicase K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D Dde_1922 UvrD/REP helicase K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D Dde_2725 helicase, RecD/TraA family K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D Dde_2196 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Dde_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Dde_0066 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Dde_2441 hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Dde_0177 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Dde_0628 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Dde_1519 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] C 03450 Non-homologous end-joining C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus and Lyssavirus C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:dde02010] D Dde_0234 ABC transporter periplasmic substrate-binding protein K05772 tupA; tungstate transport system substrate-binding protein D Dde_3309 ABC transporter substrate-binding protein K05772 tupA; tungstate transport system substrate-binding protein D Dde_0233 ABC-type transporter, integral membrane subunit K05773 tupB; tungstate transport system permease protein D Dde_0232 Fe(3+)-transporting ATPase K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6] D Dde_3518 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein D Dde_0155 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein D Dde_0154 Molybdenum ABC transporter, permease protein K02018 modB; molybdate transport system permease protein D Dde_3519 molybdate ABC transporter, inner membrane subunit K02018 modB; molybdate transport system permease protein D Dde_3520 Molybdate-transporting ATPase K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D Dde_1055 ABC transporter related protein K05776 modF; molybdate transport system ATP-binding protein D Dde_3673 extracellular solute-binding protein family 1 K11069 potD; spermidine/putrescine transport system substrate-binding protein D Dde_3672 ABC-type transporter, integral membrane subunit K11070 potC; spermidine/putrescine transport system permease protein D Dde_3671 ABC-type transporter, integral membrane subunit K11071 potB; spermidine/putrescine transport system permease protein D Dde_3670 spermidine/putrescine ABC transporter ATPase subunit K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11] D Dde_0145 ABC-type glycine betaine transport, periplasmic subunit K02002 proX; glycine betaine/proline transport system substrate-binding protein D Dde_0146 ABC-type glycine betaine transport, periplasmic subunit K02002 proX; glycine betaine/proline transport system substrate-binding protein D Dde_0675 ABC-type glycine betaine transport, periplasmic subunit K02002 proX; glycine betaine/proline transport system substrate-binding protein D Dde_3306 ABC-type glycine betaine transport, periplasmic subunit K02002 proX; glycine betaine/proline transport system substrate-binding protein D Dde_0674 ABC-type transporter, integral membrane subunit K02001 proW; glycine betaine/proline transport system permease protein D Dde_0673 glycine betaine/L-proline ABC transporter, ATPase subunit K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D Dde_3656 Glycerol-3-phosphate-transporting ATPase K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D Dde_2300 toluene tolerance family protein K07323 mlaC; phospholipid transport system substrate-binding protein D Dde_2299 Mammalian cell entry related domain protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D Dde_0021 Mammalian cell entry related domain protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D Dde_1983 Mammalian cell entry related domain protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D Dde_2297 protein of unknown function DUF140 K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D Dde_1985 protein of unknown function DUF140 K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D Dde_0023 protein of unknown function DUF140 K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D Dde_2298 Fe(3+)-transporting ATPase K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D Dde_0022 Sulfate-transporting ATPase K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D Dde_1984 Fe(3+)-transporting ATPase K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D Dde_0141 basic membrane lipoprotein K07335 bmpA; basic membrane protein A and related proteins D Dde_1507 basic membrane lipoprotein K07335 bmpA; basic membrane protein A and related proteins D Dde_0138 ABC-type transporter, integral membrane subunit K23535 nupB; general nucleoside transport system permease protein D Dde_1508 ABC-type transporter, integral membrane subunit K23535 nupB; general nucleoside transport system permease protein D Dde_1509 ABC-type transporter, integral membrane subunit K23536 nupC; general nucleoside transport system permease protein D Dde_0137 ABC-type transporter, integral membrane subunit K23536 nupC; general nucleoside transport system permease protein D Dde_1510 Monosaccharide-transporting ATPase K23537 nupA; general nucleoside transport system ATP-binding protein D Dde_0139 Monosaccharide-transporting ATPase K23537 nupA; general nucleoside transport system ATP-binding protein D Dde_3657 extracellular solute-binding protein family 1 K17315 gtsA; glucose/mannose transport system substrate-binding protein D Dde_3658 ABC-type transporter, integral membrane subunit K17316 gtsB; glucose/mannose transport system permease protein D Dde_3659 ABC-type transporter, integral membrane subunit K17317 gtsC; glucose/mannose transport system permease protein D Dde_1062 phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein D Dde_1061 phosphate ABC transporter, inner membrane subunit PstC K02037 pstC; phosphate transport system permease protein D Dde_1060 phosphate ABC transporter, inner membrane subunit PstA K02038 pstA; phosphate transport system permease protein D Dde_2386 phosphate ABC transporter, ATPase subunit K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D Dde_3325 phosphonate ABC transporter, periplasmic phosphonate binding protein K02044 phnD; phosphonate transport system substrate-binding protein D Dde_3730 phosphonate ABC transporter, periplasmic phosphonate-binding protein K02044 phnD; phosphonate transport system substrate-binding protein D Dde_3724 phosphonate ABC transporter, inner membrane subunit K02042 phnE; phosphonate transport system permease protein D Dde_3326 phosphonate ABC transporter, inner membrane subunit K02042 phnE; phosphonate transport system permease protein D Dde_3725 phosphonate ABC transporter, inner membrane subunit K02042 phnE; phosphonate transport system permease protein D Dde_3726 Phosphonate-transporting ATPase K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2] D Dde_3729 ABC transporter related protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2] D Dde_3324 phosphonate ABC transporter, ATPase subunit K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2] D Dde_0168 ABC-type transporter, periplasmic subunit family 3 K10036 glnH; glutamine transport system substrate-binding protein D Dde_0167 polar amino acid ABC transporter, inner membrane subunit K10037 glnP; glutamine transport system permease protein D Dde_0166 Phosphonate-transporting ATPase K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1] D Dde_0258 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Dde_0612 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Dde_2768 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Dde_2831 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Dde_0712 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Dde_0259 ABC-type transporter, integral membrane subunit K01997 livH; branched-chain amino acid transport system permease protein D Dde_0611 ABC-type transporter, integral membrane subunit K01997 livH; branched-chain amino acid transport system permease protein D Dde_0260 ABC-type transporter, integral membrane subunit K01998 livM; branched-chain amino acid transport system permease protein D Dde_0610 ABC-type transporter, integral membrane subunit K01998 livM; branched-chain amino acid transport system permease protein D Dde_0609 Sulfate-transporting ATPase K01995 livG; branched-chain amino acid transport system ATP-binding protein D Dde_0261 Monosaccharide-transporting ATPase K01995 livG; branched-chain amino acid transport system ATP-binding protein D Dde_0262 Fe(3+)-transporting ATPase K01996 livF; branched-chain amino acid transport system ATP-binding protein D Dde_0608 Monosaccharide-transporting ATPase K01996 livF; branched-chain amino acid transport system ATP-binding protein D Dde_0448 ABC-type transporter, periplasmic subunit K13893 yejA; microcin C transport system substrate-binding protein D Dde_0449 ABC-type transporter, integral membrane subunit K13894 yejB; microcin C transport system permease protein D Dde_0450 ABC-type transporter, integral membrane subunit K13895 yejE; microcin C transport system permease protein D Dde_0451 Nickel-transporting ATPase., Fe(3+)-transporting ATPase K13896 yejF; microcin C transport system ATP-binding protein D Dde_2208 periplasmic component of zinc ABC transporter K09815 znuA; zinc transport system substrate-binding protein D Dde_2210 permease component of zinc ABC transporter K09816 znuB; zinc transport system permease protein D Dde_2209 ATPase component of zinc ABC transporter K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D Dde_1190 cobalamin (vitamin B12) biosynthesis CbiM protein K02007 cbiM; cobalt/nickel transport system permease protein D Dde_1192 cobalt ABC transporter, inner membrane subunit CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein D Dde_1193 component of nickel ABC transport system K02006 cbiO; cobalt/nickel transport system ATP-binding protein D Dde_1189 Nickel transport complex protein, NikM subunit, transmembrane K10094 cbiK; nickel transport protein D Dde_1191 additional component of nickel ABC transport system K16915 cbiL; nickel transport protein D Dde_2954 BioY protein K03523 bioY; biotin transport system substrate-specific component D Dde_2975 hypothetical protein K16783 bioN; biotin transport system permease protein D Dde_2953 ABC transporter related protein K16784 bioM; biotin transport system ATP-binding protein [EC:7.6.2.-] D Dde_2896 ABC-2 type transporter K09690 wzm; homopolymeric O-antigen transport system permease protein D Dde_0841 ABC-2 type transporter K09690 wzm; homopolymeric O-antigen transport system permease protein D Dde_2895 Teichoic-acid-transporting ATPase K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14] D Dde_0851 Teichoic-acid-transporting ATPase K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14] D Dde_1366 lipoprotein releasing system, transmembrane protein, LolC/E family K09808 lolC_E; lipoprotein-releasing system permease protein D Dde_1367 Phosphonate-transporting ATPase K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D Dde_1474 cytochrome c assembly protein K02195 ccmC; heme exporter protein C D Dde_1475 cytochrome c-type biogenesis protein CcmB K02194 ccmB; heme exporter protein B D Dde_1476 Heme-transporting ATPase K02193 ccmA; heme exporter protein A [EC:7.6.2.5] D Dde_1948 permease YjgP/YjgQ family protein K07091 lptF; lipopolysaccharide export system permease protein D Dde_1949 permease YjgP/YjgQ family protein K11720 lptG; lipopolysaccharide export system permease protein D Dde_1770 Sulfate-transporting ATPase K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D Dde_0115 protein of unknown function DUF214 K09811 ftsX; cell division transport system permease protein D Dde_0114 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D Dde_1602 Xenobiotic-transporting ATPase K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-] D Dde_1601 Xenobiotic-transporting ATPase K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-] D Dde_1960 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D Dde_1418 type I secretion system ATPase K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB C 02060 Phosphotransferase system (PTS) [PATH:dde02060] D Dde_1089 phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D Dde_1090 Phosphotransferase system, phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr D Dde_1775 PTS system fructose subfamily IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D Dde_1777 hypothetical protein K02795 manY; mannose PTS system EIIC component D Dde_1091 PTS system mannose/fructose/sorbose family IID component K02796 manZ; mannose PTS system EIID component D Dde_1776 PTS system sorbose subfamily IIB component K10984 agaB; galactosamine PTS system EIIB component [EC:2.7.1.-] D Dde_1180 phosphoenolpyruvate-protein phosphotransferase K23993 fruB; multiphosphoryl transfer protein [EC:2.7.3.9 2.7.1.202] D Dde_1773 putative PTS IIA-like nitrogen-regulatory protein PtsN K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] C 03070 Bacterial secretion system [PATH:dde03070] D Dde_1818 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D Dde_1819 protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF D Dde_2990 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D Dde_1988 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D Dde_2237 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D Dde_1817 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D Dde_2394 membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase D Dde_1082 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Dde_0560 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Dde_1100 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D Dde_2177 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA D Dde_1469 twin-arginine translocation protein, TatB subunit K03117 tatB; sec-independent protein translocase protein TatB D Dde_1468 Sec-independent protein translocase, TatC subunit K03118 tatC; sec-independent protein translocase protein TatC B B 09132 Signal transduction C 02020 Two-component system [PATH:dde02020] D Dde_3782 multi-sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D Dde_1216 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Dde_1062 phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein D Dde_2013 protease Do K04771 degP; serine protease Do [EC:3.4.21.107] D Dde_1709 flagellin domain protein K02406 fliC; flagellin D Dde_1501 flagellin domain protein K02406 fliC; flagellin D Dde_3018 flagellin domain protein K02406 fliC; flagellin D Dde_1502 flagellin domain protein K02406 fliC; flagellin D Dde_1570 flagellin domain protein K02406 fliC; flagellin D Dde_0383 RNA polymerase, sigma 28 subunit, FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA D Dde_1717 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Dde_1538 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Dde_3589 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Dde_2320 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D Dde_0001 Chromosomal replication initiator DnaA domain-containing protein K02313 dnaA; chromosomal replication initiator protein D Dde_1551 peptidase M15D vanX D-ala-D-ala dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D Dde_0667 Endonuclease/exonuclease/phosphatase K18353 vanJ; vancomycin resistance protein VanJ D Dde_3150 carbon storage regulator, CsrA K03563 csrA; carbon storage regulator D Dde_2357 Flp/Fap pilin component K02651 flp; pilus assembly protein Flp/PilA D Dde_2359 Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB D Dde_2360 type II and III secretion system protein K02280 cpaC; pilus assembly protein CpaC D Dde_2362 response regulator receiver protein K02282 cpaE; pilus assembly protein CpaE D Dde_2363 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D Dde_2364 Type II secretion system F domain-containing protein K12510 tadB; tight adherence protein B D Dde_2365 Type II secretion system F domain-containing protein K12511 tadC; tight adherence protein C D Dde_2309 UTP-GlnB uridylyltransferase, GlnD K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59] D Dde_2310 nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1 D Dde_3493 nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1 D Dde_0102 glutamine synthetase catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Dde_0104 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Dde_3000 multi-sensor signal transduction histidine kinase K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] D Dde_3003 two component, sigma54 specific, transcriptional regulator, Fis family K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX D Dde_1635 transcriptional regulator, NifA subfamily, Fis Family K02584 nifA; Nif-specific regulatory protein D Dde_0110 signal transduction histidine kinase, nitrogen specific, NtrB K07709 zraS; two-component system, NtrC family, sensor histidine kinase HydH [EC:2.7.13.3] D Dde_0109 two component, sigma54 specific, transcriptional regulator, Fis family K07713 zraR; two-component system, NtrC family, response regulator HydG D Dde_0659 PAS modulated sigma54 specific transcriptional regulator, Fis family K07713 zraR; two-component system, NtrC family, response regulator HydG D Dde_0697 Sigma 54 interacting domain protein K07713 zraR; two-component system, NtrC family, response regulator HydG D Dde_0111 zinc resistance-associated protein K07803 zraP; zinc resistance-associated protein D Dde_2355 two component, sigma54 specific, transcriptional regulator, Fis family K07714 atoC; two-component system, NtrC family, response regulator AtoC D Dde_2952 two component, sigma54 specific, transcriptional regulator, Fis family K07714 atoC; two-component system, NtrC family, response regulator AtoC D Dde_1771 RNA polymerase, sigma 54 subunit, RpoN K03092 rpoN; RNA polymerase sigma-54 factor D Dde_2134 hydrogenase (NiFe) small subunit HydA K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6] D Dde_2135 periplasmic (NiFeSe) hydrogenase, large subunit, selenocysteine-containing K06281 hyaB; hydrogenase large subunit [EC:1.12.99.6] D Dde_1573 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D Dde_1198 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D Dde_2105 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D Dde_2411 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein D Dde_2585 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dde_0458 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dde_0434 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dde_3508 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dde_3561 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dde_0347 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dde_3074 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03406 mcp; methyl-accepting chemotaxis protein D Dde_1650 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03406 mcp; methyl-accepting chemotaxis protein D Dde_1665 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein D Dde_1755 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein D Dde_0218 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dde_1077 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dde_1279 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03406 mcp; methyl-accepting chemotaxis protein D Dde_1627 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dde_2159 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dde_2857 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03406 mcp; methyl-accepting chemotaxis protein D Dde_3261 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein D Dde_3020 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein D Dde_3293 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein D Dde_3295 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein D Dde_2968 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein D Dde_2734 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein D Dde_3246 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein D Dde_2040 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW D Dde_1078 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW D Dde_1575 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW D Dde_0575 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW D Dde_1577 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Dde_2106 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Dde_2107 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Dde_0384 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Dde_1576 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Dde_0774 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Dde_0071 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Dde_1694 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Dde_1571 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D Dde_2104 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D Dde_0391 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Dde_1493 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Dde_3100 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Dde_3068 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Dde_3311 autoinducer 2-binding periplasmic protein LuxP precursor K10910 luxP; autoinducer 2-binding periplasmic protein LuxP D Dde_0754 Extracellular solute-binding protein, family 7 K11688 dctP; C4-dicarboxylate-binding protein DctP D Dde_2959 sigma54 specific transcriptional regulator, Fis family K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D Dde_1405 two component, sigma54 specific, transcriptional regulator, Fis family K10943 flrC; two-component system, response regulator FlrC D Dde_0723 putative transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Dde_1200 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Dde_1821 cytochrome c class I K08738 CYC; cytochrome c D Dde_3204 cytochrome bd ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D Dde_3205 cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D Dde_0830 polysaccharide export protein, PEP-CTERM sytem-associated K01991 wza; polysaccharide biosynthesis/export protein D Dde_1668 Hpt domain protein K20976 hptB; histidine phosphotransfer protein HptB D Dde_0638 Anti-sigma-28 factor FlgM family protein K02398 flgM; negative regulator of flagellin synthesis FlgM C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:dde02024] D Dde_3311 autoinducer 2-binding periplasmic protein LuxP precursor K10910 luxP; autoinducer 2-binding periplasmic protein LuxP D Dde_3484 Anthranilate synthase K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D Dde_3483 glutamine amidotransferase of anthranilate synthase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D Dde_0759 putative ABC transporter solute-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D Dde_0309 ABC-type transporter, integral membrane subunit K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D Dde_0308 binding-protein-dependent transport systems inner membrane component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D Dde_0213 Polyamine-transporting ATPase K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D Dde_0258 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Dde_0612 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Dde_2768 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Dde_2831 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Dde_0712 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Dde_0259 ABC-type transporter, integral membrane subunit K01997 livH; branched-chain amino acid transport system permease protein D Dde_0611 ABC-type transporter, integral membrane subunit K01997 livH; branched-chain amino acid transport system permease protein D Dde_0260 ABC-type transporter, integral membrane subunit K01998 livM; branched-chain amino acid transport system permease protein D Dde_0610 ABC-type transporter, integral membrane subunit K01998 livM; branched-chain amino acid transport system permease protein D Dde_0609 Sulfate-transporting ATPase K01995 livG; branched-chain amino acid transport system ATP-binding protein D Dde_0261 Monosaccharide-transporting ATPase K01995 livG; branched-chain amino acid transport system ATP-binding protein D Dde_0262 Fe(3+)-transporting ATPase K01996 livF; branched-chain amino acid transport system ATP-binding protein D Dde_0608 Monosaccharide-transporting ATPase K01996 livF; branched-chain amino acid transport system ATP-binding protein D Dde_1331 beta-lactamase domain protein K13075 ahlD; N-acyl homoserine lactone hydrolase [EC:3.1.1.81] D Dde_0193 Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Dde_1725 Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Dde_0723 putative transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Dde_1200 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Dde_2434 riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D Dde_0252 protein of unknown function DUF606 K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein D Dde_0275 ABC-type transporter, periplasmic subunit K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Dde_1329 ABC-type transporter, periplasmic subunit K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Dde_1565 ABC-type transporter, periplasmic subunit K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Dde_0371 ABC-type transporter, periplasmic subunit K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Dde_3174 ABC-type transporter, periplasmic subunit K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Dde_1568 ABC-type transporter, periplasmic subunit K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Dde_1185 ABC-type transporter, periplasmic subunit K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Dde_2593 ABC-type transporter, integral membrane subunit K02033 ABC.PE.P; peptide/nickel transport system permease protein D Dde_1328 ABC-type transporter, integral membrane subunit K02033 ABC.PE.P; peptide/nickel transport system permease protein D Dde_0274 ABC-type transporter, integral membrane subunit K02033 ABC.PE.P; peptide/nickel transport system permease protein D Dde_1184 ABC-type transporter, integral membrane subunit K02033 ABC.PE.P; peptide/nickel transport system permease protein D Dde_0273 ABC-type transporter, integral membrane subunit K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Dde_1327 ABC-type transporter, integral membrane subunit K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Dde_2594 ABC-type transporter, integral membrane subunit K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Dde_1183 ABC-type transporter, integral membrane subunit K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Dde_1326 ABC transporter related protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D Dde_0272 oligopeptide/dipeptide ABC transporter, ATPase subunit K02031 ddpD; peptide/nickel transport system ATP-binding protein D Dde_1182 oligopeptide/dipeptide ABC transporter, ATPase subunit K02031 ddpD; peptide/nickel transport system ATP-binding protein D Dde_0271 oligopeptide/dipeptide ABC transporter, ATPase subunit K02032 ddpF; peptide/nickel transport system ATP-binding protein D Dde_1181 oligopeptide/dipeptide ABC transporter, ATPase subunit K02032 ddpF; peptide/nickel transport system ATP-binding protein D Dde_3778 oligopeptide/dipeptide ABC transporter, ATPase subunit K02032 ddpF; peptide/nickel transport system ATP-binding protein D Dde_2394 membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase D Dde_2990 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D Dde_1988 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D Dde_2237 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D Dde_1817 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D Dde_1082 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Dde_0560 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Dde_1100 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis [PATH:dde02030] D Dde_2411 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein D Dde_2585 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dde_0458 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dde_0434 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dde_3508 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dde_3561 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dde_0347 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dde_3074 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03406 mcp; methyl-accepting chemotaxis protein D Dde_1650 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03406 mcp; methyl-accepting chemotaxis protein D Dde_1665 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein D Dde_1755 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein D Dde_0218 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dde_1077 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dde_1279 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03406 mcp; methyl-accepting chemotaxis protein D Dde_1627 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dde_2159 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dde_2857 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03406 mcp; methyl-accepting chemotaxis protein D Dde_3261 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein D Dde_3020 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein D Dde_3293 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein D Dde_3295 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein D Dde_2968 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein D Dde_2734 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein D Dde_3246 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein D Dde_1577 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Dde_2106 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Dde_2040 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW D Dde_1078 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW D Dde_1575 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW D Dde_0575 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW D Dde_2107 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Dde_0384 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Dde_1576 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Dde_0774 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Dde_0071 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Dde_1694 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Dde_2148 chemotaxis phosphatase, CheZ K03414 cheZ; chemotaxis protein CheZ D Dde_0281 CheC domain protein K03409 cheX; chemotaxis protein CheX D Dde_1196 CheC domain protein K03409 cheX; chemotaxis protein CheX D Dde_1571 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D Dde_2104 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D Dde_0391 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Dde_1493 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Dde_3100 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Dde_3068 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Dde_3212 CheD K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44] D Dde_1573 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D Dde_1198 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D Dde_2105 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D Dde_0352 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D Dde_2708 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D Dde_3585 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D Dde_1717 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Dde_1538 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Dde_3589 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Dde_1539 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Dde_3587 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Dde_3588 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Dde_1716 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB C 02040 Flagellar assembly [PATH:dde02040] D Dde_0354 flagellar hook-basal body complex subunit FliE K02408 fliE; flagellar hook-basal body complex protein FliE D Dde_0353 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D Dde_0352 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D Dde_0351 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH D Dde_0350 flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D Dde_2705 flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ D Dde_1713 flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK D Dde_0385 flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL D Dde_3586 flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL D Dde_2708 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D Dde_3585 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D Dde_3584 flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ D Dde_3583 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D Dde_3582 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D Dde_0378 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D Dde_0380 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D Dde_0379 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D Dde_3157 flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA D Dde_0356 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D Dde_0355 flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D Dde_1712 flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD D Dde_1711 flagellar hook-basal body protein K02390 flgE; flagellar hook protein FlgE D Dde_0298 flagellar hook-basal body protein K02390 flgE; flagellar hook protein FlgE D Dde_3159 flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF D Dde_3158 flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D Dde_3156 flagellar L-ring protein K02393 flgH; flagellar L-ring protein FlgH D Dde_3155 flagellar P-ring protein K02394 flgI; flagellar P-ring protein FlgI D Dde_3154 Peptidase M23 K02395 flgJ; peptidoglycan hydrolase FlgJ D Dde_3152 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D Dde_3151 flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL D Dde_1709 flagellin domain protein K02406 fliC; flagellin D Dde_1501 flagellin domain protein K02406 fliC; flagellin D Dde_3018 flagellin domain protein K02406 fliC; flagellin D Dde_1502 flagellin domain protein K02406 fliC; flagellin D Dde_1570 flagellin domain protein K02406 fliC; flagellin D Dde_1120 flagellar hook-associated 2 domain-containing protein K02407 fliD; flagellar hook-associated protein 2 D Dde_1119 flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS D Dde_1717 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Dde_1538 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Dde_3589 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Dde_1539 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Dde_3587 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Dde_3588 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Dde_1716 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Dde_0638 Anti-sigma-28 factor FlgM family protein K02398 flgM; negative regulator of flagellin synthesis FlgM D Dde_2052 RNA polymerase, sigma 70 subunit, RpoD subfamily K03086 rpoD; RNA polymerase primary sigma factor D Dde_2959 sigma54 specific transcriptional regulator, Fis family K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D Dde_1771 RNA polymerase, sigma 54 subunit, RpoN K03092 rpoN; RNA polymerase sigma-54 factor D Dde_1405 two component, sigma54 specific, transcriptional regulator, Fis family K10943 flrC; two-component system, response regulator FlrC D Dde_0383 RNA polymerase, sigma 28 subunit, FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D Dde_0295 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism D Dde_2115 Methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance [PATH:dde01501] D Dde_2559 glycoside hydrolase family 3 domain protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D Dde_3628 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Dde_0401 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump D Dde_3124 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Dde_0993 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D Dde_1036 Peptidoglycan glycosyltransferase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] C 01502 Vancomycin resistance [PATH:dde01502] D Dde_1551 peptidase M15D vanX D-ala-D-ala dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D Dde_3043 D-alanine--D-alanine ligase domain-containing protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Dde_0366 D-alanine/D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Dde_3042 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Dde_1547 Alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D Dde_1038 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D Dde_1039 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D Dde_1042 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D Dde_0667 Endonuclease/exonuclease/phosphatase K18353 vanJ; vancomycin resistance protein VanJ C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:dde01503] D Dde_1370 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Dde_2013 protease Do K04771 degP; serine protease Do [EC:3.4.21.107] D Dde_3628 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Dde_0401 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump D Dde_1374 Acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:dde01000] C 01001 Protein kinases [BR:dde01001] D Dde_1722 putative anti-sigma regulatory factor, serine/threonine protein kinase K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1] D Dde_3468 serine/threonine protein kinase K08884 K08884; serine/threonine protein kinase, bacterial [EC:2.7.11.1] D Dde_0832 Non-specific protein-tyrosine kinase K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3] D Dde_3782 multi-sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D Dde_0160 signal transduction histidine kinase, LytS K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3] D Dde_3000 multi-sensor signal transduction histidine kinase K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] D Dde_0110 signal transduction histidine kinase, nitrogen specific, NtrB K07709 zraS; two-component system, NtrC family, sensor histidine kinase HydH [EC:2.7.13.3] D Dde_0320 integral membrane sensor signal transduction histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3] D Dde_0696 integral membrane sensor signal transduction histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3] D Dde_1577 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Dde_2106 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] C 01009 Protein phosphatases and associated proteins [BR:dde01009] D Dde_3134 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D Dde_1589 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D Dde_1147 ATP-binding region ATPase domain protein K04079 HSP90A; molecular chaperone HtpG C 01002 Peptidases and inhibitors [BR:dde01002] D Dde_2143 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36] D Dde_2358 peptidase A24A prepilin type IV K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D Dde_2139 hydrogenase expression/formation protein K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-] D Dde_2136 hydrogenase maturation protease K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-] D Dde_1470 GMP synthase, large subunit K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D Dde_1620 peptidase C26 K07010 K07010; putative glutamine amidotransferase D Dde_0334 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D Dde_1864 glucosamine 6-phosphate synthetase-like protein K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D Dde_0958 glucosamine 6-phosphate synthetase-like protein K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D Dde_0502 glucosamine/fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Dde_1135 asparagine synthase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D Dde_2891 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D Dde_3317 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D Dde_3677 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D Dde_0842 asparagine synthase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D Dde_1646 intracellular protease, PfpI family K05520 yhbO; deglycase [EC:3.5.1.124] D Dde_1169 intracellular protease, PfpI family K05520 yhbO; deglycase [EC:3.5.1.124] D Dde_0824 CAAX prenyl protease-related protein K07052 K07052; CAAX protease family protein D Dde_3367 Peptidase M15A K08640 E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D Dde_1551 peptidase M15D vanX D-ala-D-ala dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D Dde_2677 metalloprotease, iron regulated K06972 PITRM1; presequence protease [EC:3.4.24.-] D Dde_0444 peptidase M16 domain protein K07263 pqqL; zinc protease [EC:3.4.24.-] D Dde_1699 processing peptidase K07263 pqqL; zinc protease [EC:3.4.24.-] D Dde_0568 Leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D Dde_1810 acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D Dde_1186 peptidase M20 K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D Dde_2236 methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D Dde_1305 peptidase M24 K01271 pepQ; Xaa-Pro dipeptidase [EC:3.4.13.9] D Dde_0217 peptidase M24 K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D Dde_0811 peptidase M24 K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D Dde_2758 peptidase M29 aminopeptidase II K19689 ampS; aminopeptidase [EC:3.4.11.-] D Dde_1513 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D Dde_3415 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D Dde_0070 Ste24 endopeptidase K06013 STE24; STE24 endopeptidase [EC:3.4.24.84] D Dde_1051 peptidase M48 Ste24p K03799 htpX; heat shock protein HtpX [EC:3.4.24.-] D Dde_3419 peptidase M48 Ste24p K03799 htpX; heat shock protein HtpX [EC:3.4.24.-] D Dde_2161 peptidase M48 Ste24p K03799 htpX; heat shock protein HtpX [EC:3.4.24.-] D Dde_1855 peptidase M48 Ste24p K07387 K07387; metalloprotease [EC:3.4.24.-] D Dde_1122 membrane-associated zinc metalloprotease K11749 rseP; regulator of sigma E protease [EC:3.4.24.-] D Dde_2013 protease Do K04771 degP; serine protease Do [EC:3.4.21.107] D Dde_2220 ATP-dependent Clp protease, proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D Dde_2218 anti-sigma H sporulation factor, LonB K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D Dde_2444 anti-sigma H sporulation factor, LonB K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D Dde_0893 SOS-response transcriptional repressor, LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D Dde_1932 SOS-response transcriptional repressor, LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D Dde_2974 Peptidase S24/S26A/S26B, conserved region K03503 umuD; DNA polymerase V [EC:3.4.21.-] D Dde_2816 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D Dde_1437 carboxyl-terminal protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D Dde_1442 signal peptide peptidase SppA, 36K type K04773 sppA; protease IV [EC:3.4.21.-] D Dde_0508 signal peptide peptidase SppA, 36K type K04773 sppA; protease IV [EC:3.4.21.-] D Dde_1446 Rhomboid family protein K07059 K07059; rhomboid family protein D Dde_2124 20S proteasome A and B subunits K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2] D Dde_2284 Asparaginase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D Dde_1641 Gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D Dde_0058 peptidase U32 K08303 prtC; U32 family peptidase [EC:3.4.-.-] D Dde_3095 peptidase U32 K08303 prtC; U32 family peptidase [EC:3.4.-.-] D Dde_0270 alpha-2-macroglobulin domain protein K06894 yfhM; alpha-2-macroglobulin D Dde_2947 HflC protein K04087 hflC; modulator of FtsH protease HflC D Dde_2946 HflK protein K04088 hflK; modulator of FtsH protease HflK C 01003 Glycosyltransferases [BR:dde01003] D Dde_2889 glycosyl transferase family 2 K22844 aglG; glucosyl-dolichyl phosphate glucuronosyltransferase [EC:2.4.1.356] D Dde_0737 glycosyl transferase group 1 K13668 pimB; phosphatidyl-myo-inositol dimannoside synthase [EC:2.4.1.346] D Dde_3316 glycosyl transferase group 1 K12583 mgtA; phosphatidylinositol alpha 1,6-mannosyltransferase [EC:2.4.1.-] D Dde_2286 glycogen/starch synthase, ADP-glucose type K00703 glgA; starch synthase [EC:2.4.1.21] D Dde_0881 glycosyl transferase group 1 K16148 glgM; alpha-maltose-1-phosphate synthase [EC:2.4.1.342] D Dde_2516 monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D Dde_0269 Bifunctional transpeptidase/transglycosylase K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28] D Dde_3124 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Dde_2060 Alpha,alpha-trehalose-phosphate synthase (UDP-forming) K16055 TPS; trehalose 6-phosphate synthase/phosphatase [EC:2.4.1.15 3.1.3.12] C 01005 Lipopolysaccharide biosynthesis proteins [BR:dde01005] D Dde_1374 Acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D Dde_2185 lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D Dde_2986 UDP-3-0-acyl N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D Dde_1372 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D Dde_1375 protein of unknown function DUF1009 K09949 lpxI; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D Dde_2600 tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D Dde_1962 lipid A biosynthesis acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D Dde_2623 Protein of unknown function DUF2219 K09953 lpxR; lipid A 3-O-deacylase [EC:3.1.1.-] D Dde_0367 Three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D Dde_1766 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D Dde_3647 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D Dde_3687 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D Dde_1767 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] D Dde_0335 KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D Dde_0028 D-glycero-D-manno-heptose-7-phosphate 1-kinase K21344 rfaE1; D-glycero-beta-D-manno-heptose-7-phosphate kinase [EC:2.7.1.167] D Dde_3605 rfaE bifunctional protein K21345 rfaE2; D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase [EC:2.7.7.70] D Dde_1433 glycosyl transferase family 9 K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24] D Dde_1482 glycosyl transferase family 9 K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24] D Dde_0592 glycosyl transferase group 1 K02844 waaG; UDP-glucose:(heptosyl)LPS alpha-1,3-glucosyltransferase [EC:2.4.1.-] D Dde_2619 Phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28] D Dde_1481 hydrolase, HAD-superfamily, subfamily IIIA K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] D Dde_3466 ADP-L-glycero-D-manno-heptose-6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20] C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:dde01011] D Dde_0546 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Dde_1044 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D Dde_1043 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D Dde_1040 UDP-N-acetylmuramoylalanine/D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D Dde_1037 UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D Dde_3043 D-alanine--D-alanine ligase domain-containing protein K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Dde_0366 D-alanine/D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Dde_3042 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Dde_1547 Alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D Dde_2743 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D Dde_1039 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D Dde_1042 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D Dde_1946 undecaprenol kinase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D Dde_2468 virulence factor MVIN family protein K03980 murJ; putative peptidoglycan lipid II flippase D Dde_0543 integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase D Dde_3124 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Dde_0269 Bifunctional transpeptidase/transglycosylase K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28] D Dde_0993 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D Dde_1036 Peptidoglycan glycosyltransferase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D Dde_2516 monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D Dde_1551 peptidase M15D vanX D-ala-D-ala dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D Dde_3367 Peptidase M15A K08640 E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D Dde_2733 MltA domain protein K08304 mltA; peptidoglycan lytic transglycosylase A [EC:4.2.2.29] D Dde_3065 membrane-bound lytic murein transglycosylase B-like protein K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29] D Dde_1786 Lytic transglycosylase catalytic K08306 mltC; peptidoglycan lytic transglycosylase C [EC:4.2.2.29] D Dde_3580 Lytic transglycosylase catalytic K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29] D Dde_0175 Transglycosylase, Slt family K18691 mltF; peptidoglycan lytic transglycosylase F [EC:4.2.2.29] D Dde_0315 aminodeoxychorismate lyase K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29] D Dde_0531 rare lipoprotein A K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D Dde_0519 rare lipoprotein A K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D Dde_1785 SpoIID/LytB domain protein K06381 spoIID; stage II sporulation protein D (peptidoglycan lytic transglycosylase) [EC:4.2.2.29] D Dde_1370 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] C 01004 Lipid biosynthesis proteins [BR:dde01004] D Dde_2294 (Acyl-carrier-protein) S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D Dde_2428 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D Dde_2431 3-oxoacyl-(acyl-carrier-protein) synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Dde_2660 Beta-ketoacyl-acyl-carrier-protein synthase I K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Dde_2658 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Dde_2429 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Dde_2657 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D Dde_1373 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D Dde_1006 Enoyl-(acyl-carrier-protein) reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D Dde_2141 lipolytic protein G-D-S-L family K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D Dde_0413 Arylesterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D Dde_2823 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Dde_2317 Butyrate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Dde_3207 acetate/CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D Dde_0193 Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Dde_1725 Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Dde_0557 Long-chain-fatty-acid--CoA ligase K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-] D Dde_2427 fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D Dde_0172 Membrane protein YgiH K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D Dde_2001 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D Dde_1136 phospholipid/glycerol acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins [BR:dde01008] D Dde_0750 (S)-2-hydroxy-acid oxidase K16422 hmo; 4-hydroxymandelate oxidase [EC:1.1.3.46] C 01006 Prenyltransferases [BR:dde01006] D Dde_2201 Polyprenyl synthetase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] D Dde_3189 Trans-hexaprenyltranstransferase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D Dde_1126 Undecaprenyl pyrophosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D Dde_1784 tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D Dde_1392 4-hydroxybenzoate polyprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D Dde_1827 Protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] C 01007 Amino acid related enzymes [BR:dde01007] D Dde_2004 Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain-containing protein K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Dde_2648 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Dde_0626 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D Dde_0228 Tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Dde_3607 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D Dde_2121 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D Dde_2295 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Dde_1594 Methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D Dde_2142 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D Dde_2839 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D Dde_2439 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Dde_1365 Lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D Dde_0012 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Dde_0099 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D Dde_0011 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D Dde_2034 glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D Dde_2033 glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D Dde_0196 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D Dde_2206 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D Dde_2639 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D Dde_2374 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Dde_2635 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D Dde_2634 phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D Dde_3596 Aspartate transaminase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Dde_1103 Aspartate transaminase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1] D Dde_2730 LL-diaminopimelate aminotransferase K14261 alaC; alanine-synthesizing transaminase [EC:2.6.1.-] D Dde_1970 LL-diaminopimelate aminotransferase K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83] D Dde_0513 Aspartate transaminase K10907 K10907; aminotransferase [EC:2.6.1.-] D Dde_1453 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Dde_2662 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D Dde_0276 Cystathionine beta-lyase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D Dde_1426 acetylornithine and succinylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D Dde_0417 Acetylornithine transaminase K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48] D Dde_2656 adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D Dde_3180 glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D Dde_0065 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Dde_0255 aminotransferase class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins [BR:dde00194] D Dde_0984 ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D Dde_0985 ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D Dde_0986 ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D Dde_0987 ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D Dde_0988 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D Dde_0990 H+transporting two-sector ATPase B/B' subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b D Dde_0989 ATP synthase subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b D Dde_2701 ATP synthase subunit c K02110 ATPF0C; F-type H+-transporting ATPase subunit c D Dde_2700 ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D Dde_2698 ATP synthase protein I K02116 atpI; ATP synthase protein I B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:dde03000] D Dde_1611 transcriptional regulator, AraC family K12243 pchR; AraC family transcriptional regulator, transcriptional activator of the genes for pyochelin and ferripyochelin receptors D Dde_3702 transcriptional regulator, AraC family K13652 K13652; AraC family transcriptional regulator D Dde_3474 transcriptional regulator, ArgP, LysR family K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D Dde_3731 transcriptional regulator, DeoR family K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D Dde_0130 transcriptional regulator, DeoR family K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor D Dde_3654 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Dde_3327 transcriptional regulator, GntR family with UTRA sensor domain-containing protein K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein D Dde_0749 GntR domain protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D Dde_1244 GntR domain protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D Dde_1614 regulatory protein GntR HTH K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D Dde_2537 transcriptional regulator, TetR family K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor D Dde_0960 regulatory protein TetR K09017 rutR; TetR/AcrR family transcriptional regulator D Dde_1283 transcriptional regulator, TetR family K13770 ysiA; TetR/AcrR family transcriptional regulator, fatty acid metabolism regulator protein D Dde_3086 cobalamin B12-binding domain protein K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator D Dde_0497 ferric uptake regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D Dde_0753 ferric uptake regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D Dde_2211 Zinc uptake transcriptional regulator ZUR, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D Dde_2676 ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D Dde_3674 ferric uptake regulator, Fur family K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator D Dde_0723 putative transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Dde_1200 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Dde_3027 transcriptional regulator, Crp/Fnr family K21555 cooA; CRP/FNR family transcriptional regulator, carbon monoxide oxidation system transcription regulator D Dde_0463 transcriptional regulator, Crp/Fnr family K21562 flp; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D Dde_2644 transcriptional regulator, Crp/Fnr family K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator D Dde_3112 transcriptional regulator, BadM/Rrf2 family K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D Dde_0224 transcriptional regulator, BadM/Rrf2 family K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D Dde_0235 transcriptional regulator, BadM/Rrf2 family K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D Dde_3719 transcriptional regulator, BadM/Rrf2 family K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D Dde_4055 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D Dde_0747 regulatory protein ArsR K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor D Dde_2082 biotin/acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D Dde_2654 biotin/acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D Dde_2665 putative transcriptional regulator for lysine biosynthesis and transport K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator D Dde_2959 sigma54 specific transcriptional regulator, Fis family K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D Dde_1635 transcriptional regulator, NifA subfamily, Fis Family K02584 nifA; Nif-specific regulatory protein D Dde_0871 molybdenum-pterin binding protein K02019 modE; molybdate transport system regulatory protein D Dde_3517 molybdenum-pterin binding protein K02019 modE; molybdate transport system regulatory protein D Dde_3511 putative transcriptional regulator, ModE family K02019 modE; molybdate transport system regulatory protein D Dde_3521 putative transcriptional regulator, ModE family K02019 modE; molybdate transport system regulatory protein D Dde_2702 CoA-binding domain protein K01926 rex; redox-sensing transcriptional repressor D Dde_2956 transcriptional regulator NikR, CopG family K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator D Dde_0054 Proline dehydrogenase / 1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D Dde_0676 protein of unknown function DUF156 K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D Dde_0029 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Dde_2129 transcriptional regulator, CarD family K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D Dde_1026 heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D Dde_3703 amino acid-binding ACT domain protein K03567 gcvR; glycine cleavage system transcriptional repressor D Dde_3227 sigma54 specific transcriptional activator, PspF, Fis family K03974 pspF; psp operon transcriptional activator D Dde_3224 phage shock protein C K03973 pspC; phage shock protein C D Dde_1248 GreA/GreB family elongation factor K06140 rnk; regulator of nucleoside diphosphate kinase D Dde_2016 Uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D Dde_2345 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor D Dde_3660 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor D Dde_1033 MraZ protein K03925 mraZ; transcriptional regulator MraZ D Dde_2753 transcription activator effector binding protein K07471 ygiV; probable transcriptional regulator C 03021 Transcription machinery [BR:dde03021] D Dde_2231 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D Dde_2997 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D Dde_2998 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D Dde_0247 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D Dde_2052 RNA polymerase, sigma 70 subunit, RpoD subfamily K03086 rpoD; RNA polymerase primary sigma factor D Dde_1928 RNA polymerase sigma factor, sigma-70 family K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D Dde_0900 RNA polymerase sigma factor, sigma-70 family K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D Dde_2116 putative RNA polymerase, sigma 70 family subunit K03089 rpoH; RNA polymerase sigma-32 factor D Dde_1771 RNA polymerase, sigma 54 subunit, RpoN K03092 rpoN; RNA polymerase sigma-54 factor D Dde_0383 RNA polymerase, sigma 28 subunit, FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA D Dde_3161 NusA antitermination factor K02600 nusA; transcription termination/antitermination protein NusA D Dde_2438 NusB antitermination factor K03625 nusB; transcription antitermination protein NusB D Dde_2991 NusG antitermination factor K02601 nusG; transcription termination/antitermination protein NusG D Dde_0772 protein serine/threonine phosphatase with extracellular sensor K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3] D Dde_0721 protein serine/threonine phosphatase with Cache sensor K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3] D Dde_1723 response regulator receiver modulated serine phosphatase K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3] D Dde_3047 protein serine/threonine phosphatase K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3] D Dde_0720 anti-anti-sigma factor K04749 rsbV; anti-sigma B factor antagonist D Dde_0024 anti-anti-sigma factor K04749 rsbV; anti-sigma B factor antagonist D Dde_1719 anti-anti-sigma factor K04749 rsbV; anti-sigma B factor antagonist D Dde_1722 putative anti-sigma regulatory factor, serine/threonine protein kinase K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1] D Dde_2345 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor D Dde_3660 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor D Dde_2512 transcription elongation factor GreA K03624 greA; transcription elongation factor GreA D Dde_2130 transcription termination factor Rho K03628 rho; transcription termination factor Rho C 03019 Messenger RNA biogenesis [BR:dde03019] D Dde_0537 ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12] D Dde_1708 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D Dde_1137 RNA-metabolising metallo-beta-lactamase K12574 rnj; ribonuclease J [EC:3.1.-.-] D Dde_0978 2,3 cyclic-nucleotide 2-phosphodiesterase K18682 rny; ribonucrease Y [EC:3.1.-.-] D Dde_2598 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D Dde_2339 metal dependent phosphohydrolase K03698 cbf; 3'-5' exoribonuclease [EC:3.1.-.-] D Dde_2480 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D Dde_0341 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D Dde_0152 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D Dde_2446 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D Dde_0295 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Dde_3167 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D Dde_2130 transcription termination factor Rho K03628 rho; transcription termination factor Rho D Dde_1589 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D Dde_1023 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Dde_2473 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Dde_2966 metal dependent phosphohydrolase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] D Dde_3150 carbon storage regulator, CsrA K03563 csrA; carbon storage regulator D Dde_1774 UPF0042 nucleotide-binding protein yhbJ K06958 rapZ; RNase adapter protein RapZ D Dde_1172 ATP-dependent helicase HrpB K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6] C 03041 Spliceosome C 03011 Ribosome [BR:dde03011] D Dde_2011 RNA binding S1 domain protein K02945 RP-S1; small subunit ribosomal protein S1 D Dde_0507 ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D Dde_1133 ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D Dde_2251 ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D Dde_2232 ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D Dde_2240 ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D Dde_1412 ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D Dde_2262 ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D Dde_2243 ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D Dde_2608 ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D Dde_2258 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D Dde_2233 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D Dde_2263 ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D Dde_2234 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D Dde_2244 ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D Dde_3166 ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D Dde_1099 ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D Dde_2248 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D Dde_1411 ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D Dde_2253 ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D Dde_2031 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D Dde_2056 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D Dde_2993 ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D Dde_2254 ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D Dde_2257 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D Dde_2256 ribosomal protein L4/L1e K02926 RP-L4; large subunit ribosomal protein L4 D Dde_2245 ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D Dde_2242 ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D Dde_1410 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D Dde_2994 ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D Dde_2992 ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D Dde_2995 ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D Dde_2607 ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D Dde_2247 ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D Dde_2238 ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D Dde_2250 ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D Dde_2230 ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D Dde_2241 ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D Dde_1095 ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D Dde_2636 ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D Dde_2692 ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D Dde_2252 ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D Dde_2255 Ribosomal protein L25/L23 K02892 RP-L23; large subunit ribosomal protein L23 D Dde_2246 ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D Dde_2691 ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D Dde_2425 ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D Dde_2249 ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D Dde_2239 ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D Dde_2982 ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D Dde_4007 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D Dde_4010 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D Dde_2637 ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D Dde_2235 ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D Dde_2127 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 K02897 RP-L25; large subunit ribosomal protein L25 D Dde_R0082 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Dde_R0084 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Dde_R0087 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Dde_R0088 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Dde_R0001 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Dde_R0079 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Dde_R0020 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Dde_R0056 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Dde_R0004 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Dde_R0053 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Dde_R0023 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Dde_R0076 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:dde03009] D Dde_1708 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D Dde_3591 GTP-binding protein Era K03595 era; GTPase D Dde_2690 GTPase obg K03979 obgE; GTPase [EC:3.6.5.-] D Dde_2345 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor D Dde_3660 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor D Dde_3161 NusA antitermination factor K02600 nusA; transcription termination/antitermination protein NusA D Dde_2438 NusB antitermination factor K03625 nusB; transcription antitermination protein NusB D Dde_2991 NusG antitermination factor K02601 nusG; transcription termination/antitermination protein NusG D Dde_2059 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D Dde_0017 Fmu (Sun) domain protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D Dde_1782 methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D Dde_1997 Ribosomal RNA small subunit methyltransferase E K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D Dde_0122 Putative 23S rRNA m(5)C methyltransferase K11392 rsmF; 16S rRNA (cytosine1407-C5)-methyltransferase [EC:2.1.1.178] D Dde_2293 glucose inhibited division protein K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D Dde_1034 Ribosomal RNA small subunit methyltransferase H K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D Dde_1092 protein of unknown function UPF0011 K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D Dde_2981 hemolysin A K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] D Dde_3581 RNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D Dde_2326 ribosomal RNA methyltransferase RrmJ/FtsJ K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D Dde_2291 SPOUT methyltransferase K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D Dde_3451 hypothetical protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D Dde_1488 rRNA (guanine-N(2)-)-methyltransferase K25137 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173] D Dde_0307 Predicted 23S rRNA-ribose 2'-O-methyltransferase K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186] D Dde_2967 radical SAM enzyme, Cfr family K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D Dde_1958 pseudouridine synthase Rsu K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D Dde_0120 pseudouridine synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D Dde_0975 pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D Dde_1447 Dephospho-CoA kinase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D Dde_1990 ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D Dde_1097 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM D Dde_0506 MiaB-like tRNA modifying enzyme YliG K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] D Dde_2348 YcaO-domain protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor D Dde_2408 YcaO-domain protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor D Dde_1432 ribosomal L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] D Dde_0537 ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12] D Dde_0314 Holliday junction resolvase YqgF K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] D Dde_0341 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D Dde_0152 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D Dde_3170 ribosome biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D Dde_0062 GTP-binding protein engA K03977 engA; GTPase D Dde_0376 GTP-binding proten HflX K03665 hflX; GTPase D Dde_2289 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D Dde_1569 (p)ppGpp synthetase I, SpoT/RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D Dde_3160 Ribosome maturation factor rimP K09748 rimP; ribosome maturation factor RimP D Dde_1756 iojap-like protein K09710 ybeB; ribosome-associated protein D Dde_1651 protein of unknown function UPF0054 K07042 ybeY; probable rRNA maturation factor D Dde_1395 Uncharacterized protein family UPF0307 K09889 yjgA; ribosome-associated protein D Dde_1772 sigma 54 modulation protein/ribosomal protein S30EA K05808 hpf; ribosome hibernation promoting factor D Dde_1698 GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase D Dde_2426 protein of unknown function DUF177 K07040 yceD; DUF177 domain-containing protein C 03016 Transfer RNA biogenesis [BR:dde03016] D Dde_2083 Polynucleotide adenylyltransferase region K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] D Dde_1972 Polynucleotide adenylyltransferase region K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] D Dde_2004 Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain-containing protein K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Dde_2648 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Dde_2206 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D Dde_2142 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D Dde_2439 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Dde_1594 Methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D Dde_0626 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D Dde_2295 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Dde_1365 Lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D Dde_0012 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Dde_2374 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Dde_0099 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D Dde_2639 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D Dde_0196 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D Dde_2121 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D Dde_2839 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D Dde_0011 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D Dde_2635 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D Dde_2634 phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D Dde_0228 Tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Dde_3607 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D Dde_1724 D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] D Dde_0539 tRNA methyltransferase complex GCD14 subunit K07442 TRM61; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit [EC:2.1.1.219 2.1.1.220] D Dde_2646 Uncharacterized protein family UPF0066 K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-] D Dde_2707 tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D Dde_3165 tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D Dde_3079 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Dde_2289 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D Dde_1784 tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D Dde_2392 tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D Dde_1809 glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D Dde_2225 selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3] D Dde_0123 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D Dde_2396 Ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] D Dde_R0085 rnpB; RNA component of RNaseP K01978 rnpB; M1 RNA D Dde_0173 ribonuclease II K01147 rnb; exoribonuclease II [EC:3.1.13.1] D Dde_1281 ABC transporter related protein K06020 ettA; energy-dependent translational throttle protein EttA D Dde_2034 glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D Dde_2033 glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D Dde_0414 ybaK/ebsC protein K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-] D Dde_0389 dihydrouridine synthase DuS K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D Dde_3089 dihydrouridine synthase DuS K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D Dde_2378 RNA modification enzyme, MiaB family K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] D Dde_2722 RNA modification enzyme, MiaB family K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5] D Dde_0974 tRNA/rRNA methyltransferase (SpoU) K02533 lasT; tRNA/rRNA methyltransferase [EC:2.1.1.-] D Dde_1422 Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74] D Dde_1096 tRNA (guanine-N1)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D Dde_1484 tRNA guanosine-2'-O-methyltransferase K00556 trmH; tRNA (guanosine-2'-O-)-methyltransferase [EC:2.1.1.34] D Dde_1528 tRNA/rRNA methyltransferase (SpoU) K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207] D Dde_3501 methyltransferase small K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223] D Dde_1019 tRNA methyl transferase-like protein K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D Dde_3611 protein of unknown function UPF0021 K21947 ttuA; tRNA-5-methyluridine54 2-sulfurtransferase [EC:2.8.1.15] D Dde_2018 HesB/YadR/YfhF-family protein K13628 iscA; iron-sulfur cluster assembly protein D Dde_0042 S-adenosylmethionine/tRNA-ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17] D Dde_2197 queuosine biosynthesis protein QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D Dde_4002 protein of unknown function DUF208 K09765 queH; epoxyqueuosine reductase [EC:1.17.99.6] D Dde_2844 Queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29] D Dde_2027 tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D Dde_1121 peptidase M22 glycoprotease K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D Dde_2068 metalloendopeptidase, glycoprotease family K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D Dde_2047 Uncharacterized protein family UPF0079, ATPase K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D Dde_2598 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D Dde_3167 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] C 03012 Translation factors [BR:dde03012] D Dde_3162 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D Dde_2638 Translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D Dde_0250 ABC transporter related protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3 D Dde_1132 translation elongation factor Ts K02357 tsf; elongation factor Ts D Dde_2989 translation elongation factor Tu K02358 tuf; elongation factor Tu D Dde_2261 translation elongation factor G K02355 fusA; elongation factor G D Dde_2741 small GTP-binding protein K02355 fusA; elongation factor G D Dde_2063 translation elongation factor G K02355 fusA; elongation factor G D Dde_3173 selenocysteine-specific translation elongation factor K03833 selB; selenocysteine-specific elongation factor D Dde_2984 peptide chain release factor 1 K02835 prfA; peptide chain release factor 1 D Dde_1128 ribosome recycling factor K02838 frr; ribosome recycling factor D Dde_2985 protein-(glutamine-N5) methyltransferase, release factor-specific K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D Dde_2128 peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D Dde_3614 translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1 D Dde_3769 translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1 D Dde_1953 translation elongation factor P K02356 efp; elongation factor P D Dde_1805 Peptide chain release factor 2 K02836 prfB; peptide chain release factor 2 D Dde_3649 Peptide chain release factor 3 K02837 prfC; peptide chain release factor 3 D Dde_0202 Class I peptide chain release factor K15034 yaeJ; ribosome-associated protein C 03110 Chaperones and folding catalysts [BR:dde03110] D Dde_2099 ATP-dependent Clp protease, ATP-binding subunit clpA K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA D Dde_1661 ATP-dependent chaperone ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB D Dde_3413 ATPase AAA-2 domain protein K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC D Dde_2219 ATP-dependent Clp protease, ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D Dde_2014 heat shock protein HslVU, ATPase subunit HslU K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU D Dde_1147 ATP-binding region ATPase domain protein K04079 HSP90A; molecular chaperone HtpG D Dde_1023 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Dde_2473 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Dde_0248 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D Dde_1302 heat shock protein DnaJ domain protein K03686 dnaJ; molecular chaperone DnaJ D Dde_1659 chaperone DnaJ domain protein K05516 cbpA; curved DNA-binding protein D Dde_1025 GrpE protein K03687 GRPE; molecular chaperone GrpE D Dde_2008 heat shock protein Hsp20 K13993 HSP20; HSP20 family protein D Dde_1738 heat shock protein Hsp20 K13993 HSP20; HSP20 family protein D Dde_3091 heat shock protein Hsp20 K13993 HSP20; HSP20 family protein D Dde_3412 heat shock protein Hsp20 K13993 HSP20; HSP20 family protein D Dde_2798 heat shock protein Hsp20 K13993 HSP20; HSP20 family protein D Dde_1343 heat shock protein Hsp20 K13993 HSP20; HSP20 family protein D Dde_3092 heat shock protein Hsp20 K13993 HSP20; HSP20 family protein D Dde_1344 heat shock protein Hsp20 K13993 HSP20; HSP20 family protein D Dde_2474 Chaperonin Cpn10 K04078 groES; chaperonin GroES D Dde_2013 protease Do K04771 degP; serine protease Do [EC:3.4.21.107] D Dde_1513 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D Dde_3415 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D Dde_2700 ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D Dde_0111 zinc resistance-associated protein K07803 zraP; zinc resistance-associated protein D Dde_1308 hydrogenase expression/synthesis HypA K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF D Dde_1307 hydrogenase accessory protein HypB K04652 hypB; hydrogenase nickel incorporation protein HypB D Dde_1662 Peptidylprolyl isomerase K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] D Dde_0209 Peptidylprolyl isomerase K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] D Dde_1407 PpiC-type peptidyl-prolyl cis-trans isomerase K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8] D Dde_2010 PpiC-type peptidyl-prolyl cis-trans isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8] D Dde_2037 SurA domain-containing protein K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8] D Dde_0464 glutaredoxin K03671 TXN; thioredoxin D Dde_1202 Thioredoxin domain-containing protein K03671 TXN; thioredoxin D Dde_2067 thioredoxin K03671 TXN; thioredoxin D Dde_2781 Thioredoxin domain-containing protein K03671 TXN; thioredoxin D Dde_3416 thioredoxin K03672 trxC; thioredoxin 2 [EC:1.8.1.8] C 04131 Membrane trafficking [BR:dde04131] D Dde_1439 Nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D Dde_2342 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Dde_3736 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Dde_3004 phosphoglycerate mutase 1 family K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D Dde_1032 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Dde_1147 ATP-binding region ATPase domain protein K04079 HSP90A; molecular chaperone HtpG C 04121 Ubiquitin system [BR:dde04121] C 03051 Proteasome [BR:dde03051] D Dde_1147 ATP-binding region ATPase domain protein K04079 HSP90A; molecular chaperone HtpG C 03032 DNA replication proteins [BR:dde03032] D Dde_2941 Ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D Dde_1923 ERCC4 domain protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] D Dde_0905 ERCC4 domain protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] D Dde_2058 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Dde_3356 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Dde_0125 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Dde_2752 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Dde_0517 histone family protein DNA-binding protein K04764 ihfA; integration host factor subunit alpha D Dde_3213 histone family protein DNA-binding protein K05788 ihfB; integration host factor subunit beta D Dde_1799 histone family protein DNA-binding protein K05788 ihfB; integration host factor subunit beta D Dde_2320 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D Dde_0001 Chromosomal replication initiator DnaA domain-containing protein K02313 dnaA; chromosomal replication initiator protein D Dde_1409 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D Dde_0907 DNA primase catalytic core domain-containing protein K02316 dnaG; DNA primase [EC:2.7.7.101] D Dde_2053 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D Dde_1921 DNA primase catalytic core domain-containing protein K02316 dnaG; DNA primase [EC:2.7.7.101] D Dde_1545 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Dde_2196 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Dde_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Dde_2441 hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Dde_0177 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Dde_0628 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Dde_0066 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Dde_1094 Ribonuclease H K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D Dde_2093 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Dde_0004 DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D Dde_0003 DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D Dde_0106 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D Dde_1318 DNA topoisomerase III K03169 topB; DNA topoisomerase III [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:dde03036] D Dde_1708 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D Dde_2058 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Dde_3356 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Dde_0125 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Dde_2752 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Dde_0517 histone family protein DNA-binding protein K04764 ihfA; integration host factor subunit alpha D Dde_3213 histone family protein DNA-binding protein K05788 ihfB; integration host factor subunit beta D Dde_1799 histone family protein DNA-binding protein K05788 ihfB; integration host factor subunit beta D Dde_1659 chaperone DnaJ domain protein K05516 cbpA; curved DNA-binding protein D Dde_1660 hypothetical protein K18997 cbpM; chaperone modulatory protein CbpM D Dde_2320 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D Dde_0001 Chromosomal replication initiator DnaA domain-containing protein K02313 dnaA; chromosomal replication initiator protein D Dde_3474 transcriptional regulator, ArgP, LysR family K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D Dde_1046 cell division protein FtsA K03590 ftsA; cell division protein FtsA D Dde_2072 Septum formation initiator K05589 ftsB; cell division protein FtsB D Dde_0114 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D Dde_1036 Peptidoglycan glycosyltransferase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D Dde_1955 cell division protein FtsK/SpoIIIE K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D Dde_1045 Polypeptide-transport-associated domain protein FtsQ-type K03589 ftsQ; cell division protein FtsQ D Dde_1041 cell division protein FtsW K03588 ftsW; cell division protein FtsW D Dde_0115 protein of unknown function DUF214 K09811 ftsX; cell division transport system permease protein D Dde_1047 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D Dde_0979 hypothetical protein K09888 zapA; cell division protein ZapA D Dde_0980 hypothetical protein K09892 zapB; cell division protein ZapB D Dde_1370 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Dde_3628 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Dde_2171 DivIVA domain-containing protein K04074 divIVA; cell division initiation protein D Dde_1993 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins D Dde_0996 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins D Dde_0995 rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC D Dde_0992 rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA D Dde_0031 Cobyrinic acid ac-diamide synthase K03496 parA; chromosome partitioning protein D Dde_1574 Cobyrinic acid ac-diamide synthase K03496 parA; chromosome partitioning protein D Dde_0029 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Dde_1809 glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D Dde_2293 glucose inhibited division protein K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D Dde_1422 Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74] D Dde_0912 integrase family protein K03733 xerC; integrase/recombinase XerC D Dde_1914 integrase family protein K03733 xerC; integrase/recombinase XerC D Dde_1585 integrase family protein K03733 xerC; integrase/recombinase XerC D Dde_1971 tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD D Dde_1306 ATPase-like, ParA/MinD K03593 mrp; ATP-binding protein involved in chromosome partitioning D Dde_2075 ATPase-like, ParA/MinD K03593 mrp; ATP-binding protein involved in chromosome partitioning D Dde_2867 filamentation induced by cAMP protein Fic K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108] D Dde_2494 filamentation induced by cAMP protein Fic K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108] D Dde_0970 filamentation induced by cAMP protein Fic K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108] D Dde_2915 filamentation induced by cAMP protein Fic K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108] D Dde_1950 ribosome biogenesis GTP-binding protein YsxC K03978 engB; GTP-binding protein C 03400 DNA repair and recombination proteins [BR:dde03400] D Dde_0998 methylated-DNA/protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D Dde_0179 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D Dde_0514 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] D Dde_0212 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D Dde_1491 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D Dde_1923 ERCC4 domain protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] D Dde_0905 ERCC4 domain protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-] D Dde_0251 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Dde_2287 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Dde_1425 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D Dde_3701 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D Dde_0542 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D Dde_0551 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D Dde_2402 apurinic endonuclease Apn1 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D Dde_2715 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Dde_2093 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Dde_2486 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A D Dde_2096 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B D Dde_1014 excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C D Dde_3571 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Dde_2997 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D Dde_2998 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D Dde_2231 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D Dde_0247 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D Dde_2039 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D Dde_1976 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Dde_2054 Smr protein/MutS2 K07456 mutS2; DNA mismatch repair protein MutS2 D Dde_3464 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Dde_2204 exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D Dde_2202 Exonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D Dde_2196 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Dde_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Dde_2441 hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Dde_0177 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Dde_0628 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D Dde_0066 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Dde_1545 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Dde_0906 UvrD/REP helicase K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D Dde_1922 UvrD/REP helicase K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D Dde_2725 helicase, RecD/TraA family K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D Dde_2373 recA protein K03553 recA; recombination protein RecA D Dde_2323 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D Dde_2322 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D Dde_2324 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D Dde_1519 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D Dde_3623 metallophosphoesterase K03547 sbcD; DNA repair protein SbcD/Mre11 D Dde_2110 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms D Dde_2035 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D Dde_0068 Recombination protein recR K06187 recR; recombination protein RecR D Dde_2596 SMC domain protein K03631 recN; DNA repair protein RecN (Recombination protein N) D Dde_2591 hypothetical protein K03554 rdgC; recombination associated protein RdgC D Dde_0004 DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D Dde_0003 DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D Dde_0106 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D Dde_2058 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Dde_3356 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Dde_0125 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Dde_2752 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D Dde_0517 histone family protein DNA-binding protein K04764 ihfA; integration host factor subunit alpha D Dde_3213 histone family protein DNA-binding protein K05788 ihfB; integration host factor subunit beta D Dde_1799 histone family protein DNA-binding protein K05788 ihfB; integration host factor subunit beta D Dde_2446 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D Dde_3621 DNA-directed DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D Dde_2973 DNA-directed DNA polymerase K03502 umuC; DNA polymerase V D Dde_2974 Peptidase S24/S26A/S26B, conserved region K03503 umuD; DNA polymerase V [EC:3.4.21.-] D Dde_0893 SOS-response transcriptional repressor, LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D Dde_1932 SOS-response transcriptional repressor, LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D Dde_0113 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Dde_3164 phosphoesterase RecJ domain protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] C 03029 Mitochondrial biogenesis [BR:dde03029] D Dde_3162 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D Dde_2638 Translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D Dde_1132 translation elongation factor Ts K02357 tsf; elongation factor Ts D Dde_2989 translation elongation factor Tu K02358 tuf; elongation factor Tu D Dde_2261 translation elongation factor G K02355 fusA; elongation factor G D Dde_2741 small GTP-binding protein K02355 fusA; elongation factor G D Dde_2063 translation elongation factor G K02355 fusA; elongation factor G D Dde_3591 GTP-binding protein Era K03595 era; GTPase D Dde_0228 Tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Dde_2439 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Dde_0012 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Dde_2295 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Dde_1020 glutamyl-tRNA(Gln) amidotransferase, A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D Dde_2615 glutamyl-tRNA(Gln) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D Dde_1021 glutamyl-tRNA(Gln) amidotransferase, C subunit K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D Dde_1545 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Dde_1368 outer membrane protein assembly complex, YaeT protein K07277 SAM50; outer membrane protein insertion porin family D Dde_1023 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Dde_1025 GrpE protein K03687 GRPE; molecular chaperone GrpE D Dde_2473 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Dde_2474 Chaperonin Cpn10 K04078 groES; chaperonin GroES D Dde_0248 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D Dde_1302 heat shock protein DnaJ domain protein K03686 dnaJ; molecular chaperone DnaJ D Dde_3079 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Dde_1306 ATPase-like, ParA/MinD K03593 mrp; ATP-binding protein involved in chromosome partitioning D Dde_2075 ATPase-like, ParA/MinD K03593 mrp; ATP-binding protein involved in chromosome partitioning D Dde_1827 Protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D Dde_2394 membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase D Dde_1822 Copper delivery protein (cytochrome c oxidase assembly) K07152 SCO1; protein SCO1 D Dde_1147 ATP-binding region ATPase domain protein K04079 HSP90A; molecular chaperone HtpG B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:dde02000] D Dde_1602 Xenobiotic-transporting ATPase K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-] D Dde_1601 Xenobiotic-transporting ATPase K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-] D Dde_1960 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D Dde_3683 Xenobiotic-transporting ATPase K24846 pglK; ATP-binding cassette, subfamily B, bacterial PglK [EC:7.5.2.-] D Dde_1418 type I secretion system ATPase K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB D Dde_2477 ABC transporter related protein K15738 uup; ABC transport system ATP-binding/permease protein D Dde_3518 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein D Dde_0155 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein D Dde_0154 Molybdenum ABC transporter, permease protein K02018 modB; molybdate transport system permease protein D Dde_3519 molybdate ABC transporter, inner membrane subunit K02018 modB; molybdate transport system permease protein D Dde_3520 Molybdate-transporting ATPase K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D Dde_1055 ABC transporter related protein K05776 modF; molybdate transport system ATP-binding protein D Dde_0234 ABC transporter periplasmic substrate-binding protein K05772 tupA; tungstate transport system substrate-binding protein D Dde_3309 ABC transporter substrate-binding protein K05772 tupA; tungstate transport system substrate-binding protein D Dde_0233 ABC-type transporter, integral membrane subunit K05773 tupB; tungstate transport system permease protein D Dde_0232 Fe(3+)-transporting ATPase K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6] D Dde_3673 extracellular solute-binding protein family 1 K11069 potD; spermidine/putrescine transport system substrate-binding protein D Dde_3672 ABC-type transporter, integral membrane subunit K11070 potC; spermidine/putrescine transport system permease protein D Dde_3671 ABC-type transporter, integral membrane subunit K11071 potB; spermidine/putrescine transport system permease protein D Dde_3670 spermidine/putrescine ABC transporter ATPase subunit K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11] D Dde_0759 putative ABC transporter solute-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D Dde_0309 ABC-type transporter, integral membrane subunit K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D Dde_0308 binding-protein-dependent transport systems inner membrane component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D Dde_0213 Polyamine-transporting ATPase K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D Dde_0145 ABC-type glycine betaine transport, periplasmic subunit K02002 proX; glycine betaine/proline transport system substrate-binding protein D Dde_0146 ABC-type glycine betaine transport, periplasmic subunit K02002 proX; glycine betaine/proline transport system substrate-binding protein D Dde_0675 ABC-type glycine betaine transport, periplasmic subunit K02002 proX; glycine betaine/proline transport system substrate-binding protein D Dde_3306 ABC-type glycine betaine transport, periplasmic subunit K02002 proX; glycine betaine/proline transport system substrate-binding protein D Dde_0674 ABC-type transporter, integral membrane subunit K02001 proW; glycine betaine/proline transport system permease protein D Dde_0673 glycine betaine/L-proline ABC transporter, ATPase subunit K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D Dde_3656 Glycerol-3-phosphate-transporting ATPase K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D Dde_3657 extracellular solute-binding protein family 1 K17315 gtsA; glucose/mannose transport system substrate-binding protein D Dde_3658 ABC-type transporter, integral membrane subunit K17316 gtsB; glucose/mannose transport system permease protein D Dde_3659 ABC-type transporter, integral membrane subunit K17317 gtsC; glucose/mannose transport system permease protein D Dde_0141 basic membrane lipoprotein K07335 bmpA; basic membrane protein A and related proteins D Dde_1507 basic membrane lipoprotein K07335 bmpA; basic membrane protein A and related proteins D Dde_0138 ABC-type transporter, integral membrane subunit K23535 nupB; general nucleoside transport system permease protein D Dde_1508 ABC-type transporter, integral membrane subunit K23535 nupB; general nucleoside transport system permease protein D Dde_1509 ABC-type transporter, integral membrane subunit K23536 nupC; general nucleoside transport system permease protein D Dde_0137 ABC-type transporter, integral membrane subunit K23536 nupC; general nucleoside transport system permease protein D Dde_1510 Monosaccharide-transporting ATPase K23537 nupA; general nucleoside transport system ATP-binding protein D Dde_0139 Monosaccharide-transporting ATPase K23537 nupA; general nucleoside transport system ATP-binding protein D Dde_3461 Conserved hypothetical protein CHP00245 K02069 STAR2; UDP-glucose/iron transport system permease protein D Dde_2299 Mammalian cell entry related domain protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D Dde_0021 Mammalian cell entry related domain protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D Dde_1983 Mammalian cell entry related domain protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D Dde_2297 protein of unknown function DUF140 K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D Dde_1985 protein of unknown function DUF140 K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D Dde_0023 protein of unknown function DUF140 K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D Dde_2298 Fe(3+)-transporting ATPase K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D Dde_0022 Sulfate-transporting ATPase K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D Dde_1984 Fe(3+)-transporting ATPase K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D Dde_0020 hypothetical protein K18480 linN; cholesterol transport system auxiliary component D Dde_2300 toluene tolerance family protein K07323 mlaC; phospholipid transport system substrate-binding protein D Dde_1062 phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein D Dde_1061 phosphate ABC transporter, inner membrane subunit PstC K02037 pstC; phosphate transport system permease protein D Dde_1060 phosphate ABC transporter, inner membrane subunit PstA K02038 pstA; phosphate transport system permease protein D Dde_2386 phosphate ABC transporter, ATPase subunit K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D Dde_3325 phosphonate ABC transporter, periplasmic phosphonate binding protein K02044 phnD; phosphonate transport system substrate-binding protein D Dde_3730 phosphonate ABC transporter, periplasmic phosphonate-binding protein K02044 phnD; phosphonate transport system substrate-binding protein D Dde_3724 phosphonate ABC transporter, inner membrane subunit K02042 phnE; phosphonate transport system permease protein D Dde_3326 phosphonate ABC transporter, inner membrane subunit K02042 phnE; phosphonate transport system permease protein D Dde_3725 phosphonate ABC transporter, inner membrane subunit K02042 phnE; phosphonate transport system permease protein D Dde_3726 Phosphonate-transporting ATPase K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2] D Dde_3729 ABC transporter related protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2] D Dde_3324 phosphonate ABC transporter, ATPase subunit K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2] D Dde_0168 ABC-type transporter, periplasmic subunit family 3 K10036 glnH; glutamine transport system substrate-binding protein D Dde_0167 polar amino acid ABC transporter, inner membrane subunit K10037 glnP; glutamine transport system permease protein D Dde_0166 Phosphonate-transporting ATPase K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1] D Dde_0258 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Dde_0612 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Dde_2768 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Dde_2831 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Dde_0712 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein D Dde_0259 ABC-type transporter, integral membrane subunit K01997 livH; branched-chain amino acid transport system permease protein D Dde_0611 ABC-type transporter, integral membrane subunit K01997 livH; branched-chain amino acid transport system permease protein D Dde_0260 ABC-type transporter, integral membrane subunit K01998 livM; branched-chain amino acid transport system permease protein D Dde_0610 ABC-type transporter, integral membrane subunit K01998 livM; branched-chain amino acid transport system permease protein D Dde_0609 Sulfate-transporting ATPase K01995 livG; branched-chain amino acid transport system ATP-binding protein D Dde_0261 Monosaccharide-transporting ATPase K01995 livG; branched-chain amino acid transport system ATP-binding protein D Dde_0262 Fe(3+)-transporting ATPase K01996 livF; branched-chain amino acid transport system ATP-binding protein D Dde_0608 Monosaccharide-transporting ATPase K01996 livF; branched-chain amino acid transport system ATP-binding protein D Dde_1162 ABC-type transporter, periplasmic subunit family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Dde_1194 ABC-type transporter, periplasmic subunit family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Dde_0186 ABC-type transporter, periplasmic subunit family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Dde_1423 ABC-type transporter, periplasmic subunit family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Dde_3620 hypothetical protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Dde_0395 ABC-type transporter, periplasmic subunit family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Dde_3742 ABC-type transporter, periplasmic subunit family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Dde_3148 ABC-type transporter, periplasmic subunit family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Dde_2764 ABC-type transporter, periplasmic subunit family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Dde_2584 ABC-type transporter, periplasmic subunit family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Dde_1429 ABC-type transporter, periplasmic subunit family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Dde_3223 ABC-type transporter, periplasmic subunit family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Dde_0459 ABC-type transporter, periplasmic subunit family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Dde_0802 ABC-type transporter, periplasmic subunit family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Dde_3602 hypothetical protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Dde_0241 ABC-type transporter, periplasmic subunit family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Dde_1385 ABC-type transporter, periplasmic subunit family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Dde_2306 ABC-type transporter, periplasmic subunit family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Dde_3070 ABC-type transporter, periplasmic subunit family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Dde_3063 hypothetical protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Dde_3743 polar amino acid ABC transporter, inner membrane subunit K02029 ABC.PA.P; polar amino acid transport system permease protein D Dde_0183 polar amino acid ABC transporter, inner membrane subunit K02029 ABC.PA.P; polar amino acid transport system permease protein D Dde_0185 polar amino acid ABC transporter, inner membrane subunit K02029 ABC.PA.P; polar amino acid transport system permease protein D Dde_0396 polar amino acid ABC transporter, inner membrane subunit K02029 ABC.PA.P; polar amino acid transport system permease protein D Dde_2765 polar amino acid ABC transporter, inner membrane subunit K02029 ABC.PA.P; polar amino acid transport system permease protein D Dde_1431 polar amino acid ABC transporter, inner membrane subunit K02029 ABC.PA.P; polar amino acid transport system permease protein D Dde_1386 polar amino acid ABC transporter, inner membrane subunit K02029 ABC.PA.P; polar amino acid transport system permease protein D Dde_2307 polar amino acid ABC transporter, inner membrane subunit K02029 ABC.PA.P; polar amino acid transport system permease protein D Dde_3069 polar amino acid ABC transporter, inner membrane subunit K02029 ABC.PA.P; polar amino acid transport system permease protein D Dde_3071 polar amino acid ABC transporter, inner membrane subunit K02029 ABC.PA.P; polar amino acid transport system permease protein D Dde_1430 polar amino acid ABC transporter, inner membrane subunit K02029 ABC.PA.P; polar amino acid transport system permease protein D Dde_0184 Phosphonate-transporting ATPase K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D Dde_3744 Phosphonate-transporting ATPase K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D Dde_1387 Phosphate-transporting ATPase K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D Dde_2763 Phosphonate-transporting ATPase K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D Dde_1428 Phosphate-transporting ATPase K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D Dde_2308 Phosphonate-transporting ATPase K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D Dde_0275 ABC-type transporter, periplasmic subunit K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Dde_1329 ABC-type transporter, periplasmic subunit K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Dde_1565 ABC-type transporter, periplasmic subunit K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Dde_0371 ABC-type transporter, periplasmic subunit K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Dde_3174 ABC-type transporter, periplasmic subunit K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Dde_1568 ABC-type transporter, periplasmic subunit K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Dde_1185 ABC-type transporter, periplasmic subunit K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Dde_2593 ABC-type transporter, integral membrane subunit K02033 ABC.PE.P; peptide/nickel transport system permease protein D Dde_1328 ABC-type transporter, integral membrane subunit K02033 ABC.PE.P; peptide/nickel transport system permease protein D Dde_0274 ABC-type transporter, integral membrane subunit K02033 ABC.PE.P; peptide/nickel transport system permease protein D Dde_1184 ABC-type transporter, integral membrane subunit K02033 ABC.PE.P; peptide/nickel transport system permease protein D Dde_0273 ABC-type transporter, integral membrane subunit K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Dde_1327 ABC-type transporter, integral membrane subunit K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Dde_2594 ABC-type transporter, integral membrane subunit K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Dde_1183 ABC-type transporter, integral membrane subunit K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Dde_1326 ABC transporter related protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D Dde_0272 oligopeptide/dipeptide ABC transporter, ATPase subunit K02031 ddpD; peptide/nickel transport system ATP-binding protein D Dde_1182 oligopeptide/dipeptide ABC transporter, ATPase subunit K02031 ddpD; peptide/nickel transport system ATP-binding protein D Dde_0271 oligopeptide/dipeptide ABC transporter, ATPase subunit K02032 ddpF; peptide/nickel transport system ATP-binding protein D Dde_1181 oligopeptide/dipeptide ABC transporter, ATPase subunit K02032 ddpF; peptide/nickel transport system ATP-binding protein D Dde_3778 oligopeptide/dipeptide ABC transporter, ATPase subunit K02032 ddpF; peptide/nickel transport system ATP-binding protein D Dde_0448 ABC-type transporter, periplasmic subunit K13893 yejA; microcin C transport system substrate-binding protein D Dde_0449 ABC-type transporter, integral membrane subunit K13894 yejB; microcin C transport system permease protein D Dde_0450 ABC-type transporter, integral membrane subunit K13895 yejE; microcin C transport system permease protein D Dde_0451 Nickel-transporting ATPase., Fe(3+)-transporting ATPase K13896 yejF; microcin C transport system ATP-binding protein D Dde_1622 ABC-type transporter, periplasmic subunit K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D Dde_1623 ABC-type transporter, integral membrane subunit K02015 ABC.FEV.P; iron complex transport system permease protein D Dde_1624 Phosphonate-transporting ATPase K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D Dde_3106 ABC-type transporter, periplasmic subunit K25034 btuF; cobalamin transport system substrate-binding protein D Dde_3104 ABC-type transporter, integral membrane subunit K25027 btuC; cobalamin transport system permease protein D Dde_3105 Iron-chelate-transporting ATPase K25028 btuD; cobalamin transport system ATP-binding protein [EC:7.6.2.8] D Dde_2208 periplasmic component of zinc ABC transporter K09815 znuA; zinc transport system substrate-binding protein D Dde_2210 permease component of zinc ABC transporter K09816 znuB; zinc transport system permease protein D Dde_2209 ATPase component of zinc ABC transporter K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D Dde_1192 cobalt ABC transporter, inner membrane subunit CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein D Dde_1190 cobalamin (vitamin B12) biosynthesis CbiM protein K02007 cbiM; cobalt/nickel transport system permease protein D Dde_1193 component of nickel ABC transport system K02006 cbiO; cobalt/nickel transport system ATP-binding protein D Dde_1189 Nickel transport complex protein, NikM subunit, transmembrane K10094 cbiK; nickel transport protein D Dde_1191 additional component of nickel ABC transport system K16915 cbiL; nickel transport protein D Dde_2954 BioY protein K03523 bioY; biotin transport system substrate-specific component D Dde_2975 hypothetical protein K16783 bioN; biotin transport system permease protein D Dde_2953 ABC transporter related protein K16784 bioM; biotin transport system ATP-binding protein [EC:7.6.2.-] D Dde_2896 ABC-2 type transporter K09690 wzm; homopolymeric O-antigen transport system permease protein D Dde_0841 ABC-2 type transporter K09690 wzm; homopolymeric O-antigen transport system permease protein D Dde_2895 Teichoic-acid-transporting ATPase K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14] D Dde_0851 Teichoic-acid-transporting ATPase K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14] D Dde_1948 permease YjgP/YjgQ family protein K07091 lptF; lipopolysaccharide export system permease protein D Dde_1949 permease YjgP/YjgQ family protein K11720 lptG; lipopolysaccharide export system permease protein D Dde_1770 Sulfate-transporting ATPase K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D Dde_1366 lipoprotein releasing system, transmembrane protein, LolC/E family K09808 lolC_E; lipoprotein-releasing system permease protein D Dde_1367 Phosphonate-transporting ATPase K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D Dde_1474 cytochrome c assembly protein K02195 ccmC; heme exporter protein C D Dde_1475 cytochrome c-type biogenesis protein CcmB K02194 ccmB; heme exporter protein B D Dde_1476 Heme-transporting ATPase K02193 ccmA; heme exporter protein A [EC:7.6.2.5] D Dde_0115 protein of unknown function DUF214 K09811 ftsX; cell division transport system permease protein D Dde_0114 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D Dde_0698 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein D Dde_0445 ABC transporter related protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Dde_0699 Sulfate-transporting ATPase K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Dde_1335 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein D Dde_0827 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein D Dde_1336 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein D Dde_0411 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein D Dde_0733 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein D Dde_0412 Polyamine-transporting ATPase K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D Dde_1339 Phosphonate-transporting ATPase K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D Dde_0826 Phosphonate-transporting ATPase K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D Dde_0731 Phosphonate-transporting ATPase K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D Dde_1445 ABC transporter related protein K09013 sufC; Fe-S cluster assembly ATP-binding protein D Dde_0326 sodium/sulphate symporter K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5 D Dde_2418 MATE efflux family protein K26939 norM; MATE family, multidrug efflux pump D Dde_2162 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump D Dde_2651 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump D Dde_3053 major facilitator superfamily MFS_1 K08177 oxlT; MFS transporter, OFA family, oxalate/formate antiporter D Dde_0668 drug resistance transporter, Bcr/CflA subfamily K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D Dde_1089 phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D Dde_1090 Phosphotransferase system, phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr D Dde_1180 phosphoenolpyruvate-protein phosphotransferase K23993 fruB; multiphosphoryl transfer protein [EC:2.7.3.9 2.7.1.202] D Dde_1775 PTS system fructose subfamily IIA component K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D Dde_1777 hypothetical protein K02795 manY; mannose PTS system EIIC component D Dde_1091 PTS system mannose/fructose/sorbose family IID component K02796 manZ; mannose PTS system EIID component D Dde_1776 PTS system sorbose subfamily IIB component K10984 agaB; galactosamine PTS system EIIB component [EC:2.7.1.-] D Dde_1773 putative PTS IIA-like nitrogen-regulatory protein PtsN K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] D Dde_0409 major intrinsic protein K02440 glpF; glycerol uptake facilitator D Dde_3005 Ion transport protein K10716 kch; voltage-gated potassium channel D Dde_2095 TrkA-N domain protein K10716 kch; voltage-gated potassium channel D Dde_2311 ammonium transporter K03320 amt; ammonium transporter, Amt family D Dde_3492 ammonium transporter K03320 amt; ammonium transporter, Amt family D Dde_3447 MscS Mechanosensitive ion channel K05802 mscK; potassium-dependent mechanosensitive channel D Dde_2565 MscS Mechanosensitive ion channel K03442 mscS; small conductance mechanosensitive channel D Dde_1856 MscS Mechanosensitive ion channel K03442 mscS; small conductance mechanosensitive channel D Dde_1832 magnesium transporter K06213 mgtE; magnesium transporter D Dde_1717 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Dde_1538 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Dde_3589 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Dde_1539 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Dde_3587 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Dde_3588 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Dde_1716 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Dde_2154 MotA/TolQ/ExbB proton channel K03561 exbB; biopolymer transport protein ExbB D Dde_2153 MotA/TolQ/ExbB proton channel K03561 exbB; biopolymer transport protein ExbB D Dde_0453 MotA/TolQ/ExbB proton channel K03561 exbB; biopolymer transport protein ExbB D Dde_0454 MotA/TolQ/ExbB proton channel K03561 exbB; biopolymer transport protein ExbB D Dde_0455 Biopolymer transport protein ExbD/TolR K03559 exbD; biopolymer transport protein ExbD D Dde_2155 Biopolymer transport protein ExbD/TolR K03559 exbD; biopolymer transport protein ExbD D Dde_3629 protein TolQ K03562 tolQ; biopolymer transport protein TolQ D Dde_3630 protein TolR K03560 tolR; biopolymer transport protein TolR D Dde_0436 magnesium and cobalt transport protein CorA K03284 corA; magnesium transporter D Dde_2102 CrcB-like protein K06199 crcB; fluoride exporter D Dde_3036 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family D Dde_1479 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family D Dde_1689 OmpA/MotB domain protein K03286 TC.OOP; OmpA-OmpF porin, OOP family D Dde_0339 membrane protein involved in aromatic hydrocarbon degradation K06076 fadL; long-chain fatty acid transport protein D Dde_1600 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein D Dde_1415 type I secretion outer membrane protein, TolC family K12543 lapE; outer membrane protein, adhesin transport system D Dde_0830 polysaccharide export protein, PEP-CTERM sytem-associated K01991 wza; polysaccharide biosynthesis/export protein D Dde_1368 outer membrane protein assembly complex, YaeT protein K07277 SAM50; outer membrane protein insertion porin family D Dde_2065 outer membrane assembly lipoprotein YfiO K05807 bamD; outer membrane protein assembly factor BamD D Dde_1769 OstA family protein K09774 lptA; lipopolysaccharide export system protein LptA D Dde_1768 hypothetical protein K11719 lptC; lipopolysaccharide export system protein LptC D Dde_1413 Organic solvent tolerance protein K04744 lptD; LPS-assembly protein D Dde_1807 CBS domain containing protein K06189 corC; hemolysin (HlyC) family protein D Dde_3278 microcompartments protein K04027 eutM; ethanolamine utilization protein EutM D Dde_3270 microcompartments protein K04027 eutM; ethanolamine utilization protein EutM D Dde_3555 zinc/iron permease K07238 TC.ZIP; zinc transporter, ZIP family D Dde_0401 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump D Dde_2350 small multidrug resistance protein K03297 emrE; small multidrug resistance pump D Dde_2405 small multidrug resistance protein K11742 mdtI; spermidine export protein MdtI D Dde_2406 small multidrug resistance protein K11743 mdtJ; spermidine export protein MdtJ D Dde_2856 protein of unknown function DUF6 transmembrane K03298 TC.DME; drug/metabolite transporter, DME family D Dde_1350 RarD protein, DMT superfamily transporter K05786 rarD; chloramphenicol-sensitive protein RarD D Dde_0252 protein of unknown function DUF606 K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein D Dde_0129 2-keto-3-deoxygluconate permease K02526 kdgT; 2-keto-3-deoxygluconate permease D Dde_1074 L-lactate transport K03303 lutP; lactate permease D Dde_3238 L-lactate transport K03303 lutP; lactate permease D Dde_3305 choline/carnitine/betaine transporter K02168 betT; choline/glycine/proline betaine transport protein D Dde_2409 Na+/Ca+ antiporter, CaCA family K07301 yrbG; cation:H+ antiporter D Dde_1188 Na+/Ca+ antiporter, CaCA family K07301 yrbG; cation:H+ antiporter D Dde_1854 Na+/Ca+ antiporter, CaCA family K07301 yrbG; cation:H+ antiporter D Dde_3321 sodium/pantothenate symporter K14392 panF; sodium/pantothenate symporter D Dde_0630 putative sodium symporter protein K14393 actP; cation/acetate symporter D Dde_2771 Na+/H+ antiporter NhaA K03313 nhaA; Na+:H+ antiporter, NhaA family D Dde_0461 Na+/H+ antiporter NhaC K03315 nhaC; Na+:H+ antiporter, NhaC family D Dde_0727 sodium/hydrogen exchanger K26735 KEA4_5_6; K+:H+ antiporter D Dde_2029 potassium uptake protein, TrkH family K03498 trkH; trk/ktr system potassium uptake protein D Dde_0567 H(+)-transporting two-sector ATPase K03498 trkH; trk/ktr system potassium uptake protein D Dde_0566 TrkA-N domain protein K03499 trkA; trk/ktr system potassium uptake protein D Dde_2030 TrkA-N domain protein K03499 trkA; trk/ktr system potassium uptake protein D Dde_1449 uracil-xanthine permease K02824 uraA; uracil permease D Dde_3298 Tryptophan/tyrosine permease K03834 tyrP; tyrosine-specific transport protein D Dde_0310 Cl-channel voltage-gated family protein K03281 clcA; chloride channel protein, CIC family D Dde_3504 Cl-channel voltage-gated family protein K03281 clcA; chloride channel protein, CIC family D Dde_1102 sulphate transporter K03321 TC.SULP; sulfate permease, SulP family D Dde_2506 sulfate transporter K03321 TC.SULP; sulfate permease, SulP family D Dde_2855 sulphate transporter K03321 TC.SULP; sulfate permease, SulP family D Dde_3641 sulfate transporter K03321 TC.SULP; sulfate permease, SulP family D Dde_0754 Extracellular solute-binding protein, family 7 K11688 dctP; C4-dicarboxylate-binding protein DctP D Dde_1550 TRAP dicarboxylate transporter, DctM subunit K21393 yiaN; TRAP-type transport system large permease protein D Dde_1548 TRAP dicarboxylate transporter, DctP subunit K21395 yiaO; TRAP-type transport system periplasmic protein D Dde_2216 TRAP-type C4-dicarboxylate transport system, periplasmic component, DctP K21395 yiaO; TRAP-type transport system periplasmic protein D Dde_2791 arsenical-resistance protein K03325 ACR3; arsenite transporter D Dde_2468 virulence factor MVIN family protein K03980 murJ; putative peptidoglycan lipid II flippase D Dde_0543 integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase D Dde_0880 Auxin Efflux Carrier K13936 mdcF; malonate transporter and related proteins D Dde_3475 Lysine exporter protein (LYSE/YGGA) K06895 lysE; L-lysine exporter family protein LysE/ArgO D Dde_2833 Lysine exporter protein (LYSE/YGGA) K05835 rhtC; threonine efflux protein D Dde_3176 AzlC family protein K26605 azlC; branched chain amino acid efflux pump D Dde_0158 AzlC family protein K26605 azlC; branched chain amino acid efflux pump D Dde_0159 branched-chain amino acid transport K26606 azlD; branched chain amino acid efflux pump D Dde_3177 branched-chain amino acid transport K26606 azlD; branched chain amino acid efflux pump D Dde_1833 protein of unknown function DUF165 K09125 yhhQ; queuosine precursor transporter D Dde_1840 multiple antibiotic resistance (MarC)-related protein K05595 marC; multiple antibiotic resistance protein D Dde_2198 multiple antibiotic resistance (MarC)-related protein K05595 marC; multiple antibiotic resistance protein D Dde_1041 cell division protein FtsW K03588 ftsW; cell division protein FtsW D Dde_2978 protein of unknown function DUF204 K23242 mntP; manganese efflux pump family protein D Dde_2976 hypothetical protein K08970 rcnA; nickel/cobalt transporter (NicO) family protein D Dde_0285 high-affinity nickel-transporter K08970 rcnA; nickel/cobalt transporter (NicO) family protein D Dde_0456 TonB family protein K03832 tonB; periplasmic protein TonB D Dde_2156 TonB family protein K03832 tonB; periplasmic protein TonB D Dde_3633 peptidoglycan-associated lipoprotein K03640 pal; peptidoglycan-associated lipoprotein D Dde_3631 protein TolA K03646 tolA; colicin import membrane protein D Dde_3632 Tol-Pal system beta propeller repeat protein TolB K03641 tolB; TolB protein D Dde_2782 cytochrome c biogenesis protein transmembrane region K06196 ccdA; cytochrome c-type biogenesis protein D Dde_1076 Nitrate reductase K08352 phsA; thiosulfate reductase / polysulfide reductase chain A [EC:1.8.5.5] D Dde_0682 Nitrate reductase K08352 phsA; thiosulfate reductase / polysulfide reductase chain A [EC:1.8.5.5] D Dde_2944 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein K08353 phsB; thiosulfate reductase electron transport protein D Dde_2934 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein K23301 qrcC; menaquinone reductase, iron-sulfur cluster-binding subunit [EC:1.97.-.-] D Dde_2933 molybdopterin oxidoreductase K23302 qrcB; menaquinone reductase, molybdopterin-binding-like subunit D Dde_2935 polysulphide reductase NrfD K23303 qrcD; menaquinone reductase, integral membrane subunit D Dde_1419 type I secretion membrane fusion protein, HlyD family K12542 lapC; membrane fusion protein, adhesin transport system D Dde_0402 efflux transporter, RND family, MFP subunit K18901 bpeE; membrane fusion protein, multidrug efflux system D Dde_3628 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Dde_0832 Non-specific protein-tyrosine kinase K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3] D Dde_0831 polysaccharide chain length determinant protein, PEP-CTERM locus subfamily K25590 epsF; protein tyrosine kinase modulator D Dde_2670 ferrous iron transporter component feoA K04758 feoA; ferrous iron transport protein A D Dde_2673 ferrous iron transporter component feoA K04758 feoA; ferrous iron transport protein A D Dde_1599 FeoA family protein K04758 feoA; ferrous iron transport protein A D Dde_1598 GTP-binding protein HSR1-related protein K04759 feoB; ferrous iron transport protein B D Dde_2669 ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B D Dde_1477 cytochrome c assembly protein K02198 ccmF; cytochrome c-type biogenesis protein CcmF D Dde_1140 MgtC/SapB transporter K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein C 02044 Secretion system [BR:dde02044] D Dde_1418 type I secretion system ATPase K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB D Dde_1419 type I secretion membrane fusion protein, HlyD family K12542 lapC; membrane fusion protein, adhesin transport system D Dde_1415 type I secretion outer membrane protein, TolC family K12543 lapE; outer membrane protein, adhesin transport system D Dde_2358 peptidase A24A prepilin type IV K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D Dde_2359 Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB D Dde_2360 type II and III secretion system protein K02280 cpaC; pilus assembly protein CpaC D Dde_2362 response regulator receiver protein K02282 cpaE; pilus assembly protein CpaE D Dde_2363 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D Dde_2364 Type II secretion system F domain-containing protein K12510 tadB; tight adherence protein B D Dde_2365 Type II secretion system F domain-containing protein K12511 tadC; tight adherence protein C D Dde_2357 Flp/Fap pilin component K02651 flp; pilus assembly protein Flp/PilA D Dde_2172 protein of unknown function YGGT K02221 yggT; YggT family protein D Dde_2433 CMP/dCMP deaminase zinc-binding protein K01493 comEB; dCMP deaminase [EC:3.5.4.12] D Dde_0547 ComEC/Rec2-related protein K02238 comEC; competence protein ComEC D Dde_0380 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D Dde_0379 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D Dde_0353 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D Dde_0351 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH D Dde_0350 flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D Dde_3585 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D Dde_3584 flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ D Dde_3583 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D Dde_3582 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D Dde_0378 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D Dde_1082 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Dde_1818 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D Dde_2990 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D Dde_1819 protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF D Dde_1988 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D Dde_2237 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D Dde_1100 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D Dde_0560 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Dde_1817 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D Dde_2394 membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase D Dde_2177 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA D Dde_1469 twin-arginine translocation protein, TatB subunit K03117 tatB; sec-independent protein translocase protein TatB D Dde_1468 Sec-independent protein translocase, TatC subunit K03118 tatC; sec-independent protein translocase protein TatC C 02042 Bacterial toxins [BR:dde02042] D Dde_3036 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family D Dde_1479 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family D Dde_1696 channel protein, hemolysin III family K11068 hlyIII; hemolysin III C 02022 Two-component system [BR:dde02022] D Dde_3782 multi-sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D Dde_0321 response regulator receiver protein K02483 K02483; two-component system, OmpR family, response regulator D Dde_0695 response regulator receiver protein K02483 K02483; two-component system, OmpR family, response regulator D Dde_0160 signal transduction histidine kinase, LytS K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3] D Dde_0161 two component transcriptional regulator, LytTR family K02477 K02477; two-component system, LytTR family, response regulator D Dde_3000 multi-sensor signal transduction histidine kinase K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] D Dde_3003 two component, sigma54 specific, transcriptional regulator, Fis family K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX D Dde_0110 signal transduction histidine kinase, nitrogen specific, NtrB K07709 zraS; two-component system, NtrC family, sensor histidine kinase HydH [EC:2.7.13.3] D Dde_0109 two component, sigma54 specific, transcriptional regulator, Fis family K07713 zraR; two-component system, NtrC family, response regulator HydG D Dde_0659 PAS modulated sigma54 specific transcriptional regulator, Fis family K07713 zraR; two-component system, NtrC family, response regulator HydG D Dde_0697 Sigma 54 interacting domain protein K07713 zraR; two-component system, NtrC family, response regulator HydG D Dde_2355 two component, sigma54 specific, transcriptional regulator, Fis family K07714 atoC; two-component system, NtrC family, response regulator AtoC D Dde_2952 two component, sigma54 specific, transcriptional regulator, Fis family K07714 atoC; two-component system, NtrC family, response regulator AtoC D Dde_0320 integral membrane sensor signal transduction histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3] D Dde_0696 integral membrane sensor signal transduction histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3] D Dde_0850 two component, sigma54 specific, transcriptional regulator, Fis family K02481 flgR; two-component system, NtrC family, response regulator D Dde_1016 two component, sigma54 specific, transcriptional regulator, Fis family K02481 flgR; two-component system, NtrC family, response regulator D Dde_1260 putative two component, sigma54 specific, transcriptional regulator K02481 flgR; two-component system, NtrC family, response regulator D Dde_3234 putative two component, sigma54 specific, transcriptional regulator K02481 flgR; two-component system, NtrC family, response regulator D Dde_3536 two component, sigma54 specific, transcriptional regulator, Fis family K02481 flgR; two-component system, NtrC family, response regulator D Dde_1685 two component, sigma54 specific, transcriptional regulator, Fis family K02481 flgR; two-component system, NtrC family, response regulator D Dde_1577 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Dde_2106 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Dde_2107 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Dde_0384 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Dde_1576 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Dde_0774 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Dde_0071 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Dde_1694 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Dde_1571 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D Dde_2104 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D Dde_0391 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Dde_1493 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Dde_3100 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Dde_3068 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Dde_1405 two component, sigma54 specific, transcriptional regulator, Fis family K10943 flrC; two-component system, response regulator FlrC D Dde_1668 Hpt domain protein K20976 hptB; histidine phosphotransfer protein HptB C 02035 Bacterial motility proteins [BR:dde02035] D Dde_1577 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Dde_2106 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Dde_2040 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW D Dde_1078 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW D Dde_1575 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW D Dde_0575 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW D Dde_0281 CheC domain protein K03409 cheX; chemotaxis protein CheX D Dde_1196 CheC domain protein K03409 cheX; chemotaxis protein CheX D Dde_3212 CheD K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44] D Dde_1573 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D Dde_1198 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D Dde_2105 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D Dde_1571 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D Dde_2104 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D Dde_2107 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Dde_0384 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Dde_1576 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Dde_0774 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Dde_0071 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Dde_1694 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Dde_2148 chemotaxis phosphatase, CheZ K03414 cheZ; chemotaxis protein CheZ D Dde_0391 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Dde_1493 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Dde_3100 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Dde_3068 response regulator receiver modulated CheW protein K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D Dde_2411 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein D Dde_2585 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dde_0458 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dde_0434 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dde_3508 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dde_3561 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dde_0347 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dde_3074 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03406 mcp; methyl-accepting chemotaxis protein D Dde_1650 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03406 mcp; methyl-accepting chemotaxis protein D Dde_1665 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein D Dde_1755 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein D Dde_0218 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dde_1077 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dde_1279 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03406 mcp; methyl-accepting chemotaxis protein D Dde_1627 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dde_2159 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dde_2857 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03406 mcp; methyl-accepting chemotaxis protein D Dde_3261 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein D Dde_3020 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein D Dde_3293 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein D Dde_3295 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein D Dde_2968 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein D Dde_2734 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein D Dde_3246 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein D Dde_0351 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH D Dde_0350 flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D Dde_2705 flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ D Dde_3584 flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ D Dde_3583 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D Dde_3582 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D Dde_0378 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D Dde_0380 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D Dde_0379 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D Dde_0352 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D Dde_2708 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D Dde_3585 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D Dde_0353 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D Dde_3155 flagellar P-ring protein K02394 flgI; flagellar P-ring protein FlgI D Dde_3157 flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA D Dde_3156 flagellar L-ring protein K02393 flgH; flagellar L-ring protein FlgH D Dde_0385 flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL D Dde_3586 flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL D Dde_0354 flagellar hook-basal body complex subunit FliE K02408 fliE; flagellar hook-basal body complex protein FliE D Dde_1713 flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK D Dde_0356 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D Dde_0355 flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D Dde_1712 flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD D Dde_3159 flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF D Dde_3158 flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D Dde_3154 Peptidase M23 K02395 flgJ; peptidoglycan hydrolase FlgJ D Dde_1711 flagellar hook-basal body protein K02390 flgE; flagellar hook protein FlgE D Dde_0298 flagellar hook-basal body protein K02390 flgE; flagellar hook protein FlgE D Dde_3152 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D Dde_3151 flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL D Dde_1709 flagellin domain protein K02406 fliC; flagellin D Dde_1501 flagellin domain protein K02406 fliC; flagellin D Dde_3018 flagellin domain protein K02406 fliC; flagellin D Dde_1502 flagellin domain protein K02406 fliC; flagellin D Dde_1570 flagellin domain protein K02406 fliC; flagellin D Dde_1120 flagellar hook-associated 2 domain-containing protein K02407 fliD; flagellar hook-associated protein 2 D Dde_1119 flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS D Dde_0383 RNA polymerase, sigma 28 subunit, FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA D Dde_1717 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Dde_1538 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Dde_3589 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Dde_1539 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Dde_3587 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Dde_3588 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Dde_1716 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Dde_2959 sigma54 specific transcriptional regulator, Fis family K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein D Dde_1405 two component, sigma54 specific, transcriptional regulator, Fis family K10943 flrC; two-component system, response regulator FlrC D Dde_3149 Flagellar assembly factor FliW K13626 fliW; flagellar assembly factor FliW D Dde_0638 Anti-sigma-28 factor FlgM family protein K02398 flgM; negative regulator of flagellin synthesis FlgM D Dde_1710 hypothetical protein K06603 flaG; flagellar protein FlaG D Dde_0381 GTP-binding signal recognition particle SRP54 G-domain-containing protein K02404 flhF; flagellar biosynthesis protein FlhF D Dde_0382 Cobyrinic acid ac-diamide synthase K04562 flhG; flagellar biosynthesis protein FlhG D Dde_1800 flagellar synthesis regulator FleN K04562 flhG; flagellar biosynthesis protein FlhG D Dde_2357 Flp/Fap pilin component K02651 flp; pilus assembly protein Flp/PilA D Dde_2358 peptidase A24A prepilin type IV K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D Dde_2359 Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB D Dde_2360 type II and III secretion system protein K02280 cpaC; pilus assembly protein CpaC D Dde_2362 response regulator receiver protein K02282 cpaE; pilus assembly protein CpaE D Dde_2363 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:dde04812] D Dde_2961 UPF0103/Mediator of ErbB2-driven cell motility-containing protein K06990 MEMO1; MEMO1 family protein D Dde_1993 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins D Dde_0996 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins D Dde_1047 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D Dde_1046 cell division protein FtsA K03590 ftsA; cell division protein FtsA D Dde_0031 Cobyrinic acid ac-diamide synthase K03496 parA; chromosome partitioning protein D Dde_1574 Cobyrinic acid ac-diamide synthase K03496 parA; chromosome partitioning protein D Dde_0029 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein C 04147 Exosome [BR:dde04147] D Dde_1147 ATP-binding region ATPase domain protein K04079 HSP90A; molecular chaperone HtpG D Dde_0295 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Dde_2342 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Dde_3736 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Dde_2630 Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D Dde_1032 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Dde_2560 Peroxiredoxin K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24] D Dde_2473 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Dde_1023 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Dde_3597 phosphoglucose isomerase (PGI) K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Dde_1471 inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D Dde_2989 translation elongation factor Tu K02358 tuf; elongation factor Tu D Dde_0193 Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Dde_1725 Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Dde_3134 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D Dde_2028 Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D Dde_0140 Adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D Dde_2530 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D Dde_2531 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D Dde_1124 Aromatic-L-amino-acid decarboxylase K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105] D Dde_2069 Fructose-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11] D Dde_3653 Galactokinase K00849 galK; galactokinase [EC:2.7.1.6] D Dde_2285 1,4-alpha-glucan-branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D Dde_0410 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D Dde_0102 glutamine synthetase catalytic region K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Dde_0104 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Dde_2576 Porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D Dde_1216 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] D Dde_3689 Phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Dde_0174 Phosphoribosylaminoimidazolecarboxamide formyltransferase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D Dde_0070 Ste24 endopeptidase K06013 STE24; STE24 endopeptidase [EC:3.4.24.84] D Dde_1690 Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dde_3471 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D Dde_1989 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D Dde_3004 phosphoglycerate mutase 1 family K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] C 02048 Prokaryotic defense system [BR:dde02048] D Dde_0857 CRISPR-associated protein Cas2 K09951 cas2; CRISPR-associated protein Cas2 D Dde_0865 metal dependent phosphohydrolase K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4] D Dde_0864 CRISPR-associated protein, Cse1 family K19123 casA; CRISPR system Cascade subunit CasA D Dde_0863 CRISPR-associated protein, Cse2 family K19046 casB; CRISPR system Cascade subunit CasB D Dde_0862 CRISPR-associated protein, Cse4 family K19124 casC; CRISPR system Cascade subunit CasC D Dde_0861 CRISPR-associated protein Cas5 family K19125 casD; CRISPR system Cascade subunit CasD D Dde_0860 CRISPR-associated protein, Cse3 family K19126 casE; CRISPR system Cascade subunit CasE D Dde_2499 Type I site-specific deoxyribonuclease K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] D Dde_1859 Restriction endonuclease, type I, EcoRI, R subunit/Type III K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] D Dde_2870 Restriction endonuclease, type I, EcoRI, R subunit/Type III K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] D Dde_3424 type I site-specific deoxyribonuclease, HsdR family K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] D Dde_2496 restriction modification system DNA specificity domain-containing protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] D Dde_1860 restriction modification system DNA specificity domain-containing protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] D Dde_2869 restriction modification system DNA specificity domain-containing protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] D Dde_3425 restriction modification system DNA specificity domain-containing protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] D Dde_1861 N-6 DNA methylase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] D Dde_2498 Site-specific DNA-methyltransferase (adenine-specific) K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] D Dde_3427 Site-specific DNA-methyltransferase (adenine-specific) K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] D Dde_2868 N-6 DNA methylase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] D Dde_3429 type I restriction-modification system, M subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] D Dde_0922 Site-specific DNA-methyltransferase (adenine-specific) K07318 K07318; adenine-specific DNA-methyltransferase [EC:2.1.1.72] D Dde_1904 Site-specific DNA-methyltransferase (adenine-specific) K07318 K07318; adenine-specific DNA-methyltransferase [EC:2.1.1.72] D Dde_1300 DNA methylase N-4/N-6 domain protein K00571 E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72] D Dde_1742 Type III site-specific deoxyribonuclease K01156 res; type III restriction enzyme [EC:3.1.21.5] D Dde_1215 HNH endonuclease K07451 mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-] D Dde_1858 restriction endonuclease K07448 mrr; restriction system protein D Dde_2800 restriction endonuclease K07448 mrr; restriction system protein D Dde_3554 hypothetical protein K18843 hicB; antitoxin HicB D Dde_3224 phage shock protein C K03973 pspC; phage shock protein C D Dde_3225 phage shock protein B K03970 pspB; phage shock protein B D Dde_2911 plasmid stabilization system K19092 parE1_3_4; toxin ParE1/3/4 D Dde_2910 addiction module antidote protein, CC2985 family K07746 parD1_3_4; antitoxin ParD1/3/4 D Dde_1047 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D Dde_1993 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins D Dde_0996 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins D Dde_2004 Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain-containing protein K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Dde_2648 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D Dde_3079 cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels [BR:dde04040] C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules [BR:dde04090] C 01504 Antimicrobial resistance genes [BR:dde01504] D Dde_1494 Chloramphenicol O-acetyltransferase K00638 catB; chloramphenicol O-acetyltransferase type B [EC:2.3.1.28] D Dde_3692 hypothetical protein K00638 catB; chloramphenicol O-acetyltransferase type B [EC:2.3.1.28] D Dde_0667 Endonuclease/exonuclease/phosphatase K18353 vanJ; vancomycin resistance protein VanJ D Dde_1551 peptidase M15D vanX D-ala-D-ala dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22] D Dde_3628 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Dde_0401 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump D Dde_0402 efflux transporter, RND family, MFP subunit K18901 bpeE; membrane fusion protein, multidrug efflux system C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:dde00537] D Dde_1216 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1] C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins [BR:dde03200] C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:dde03100] D Dde_R0071 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Dde_R0081 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Dde_R0003 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Dde_R0077 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Dde_R0054 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Dde_R0022 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Dde_R0067 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Dde_R0006 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Dde_R0042 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Dde_R0035 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Dde_R0036 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Dde_R0037 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Dde_R0027 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Dde_R0028 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Dde_R0064 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Dde_R0066 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Dde_R0047 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D Dde_R0010 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Dde_R0043 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Dde_R0009 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Dde_R0068 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Dde_R0012 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Dde_R0046 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Dde_R0050 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Dde_R0048 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Dde_R0049 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Dde_R0061 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Dde_R0008 tRNA-His K14226 tRNA-His; tRNA His D Dde_R0002 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Dde_R0021 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Dde_R0055 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Dde_R0078 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Dde_R0014 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Dde_R0041 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Dde_R0045 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Dde_R0051 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Dde_R0074 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Dde_R0013 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Dde_R0072 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Dde_R0007 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Dde_R0025 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Dde_R0026 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Dde_R0044 tRNA-Met K14230 tRNA-Met; tRNA Met D Dde_R0039 tRNA-Met K14230 tRNA-Met; tRNA Met D Dde_R0040 tRNA-Met K14230 tRNA-Met; tRNA Met D Dde_R0031 tRNA-Met K14230 tRNA-Met; tRNA Met D Dde_R0080 tRNA-Met K14230 tRNA-Met; tRNA Met D Dde_R0073 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D Dde_R0069 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Dde_R0030 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Dde_R0032 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Dde_R0018 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Dde_R0058 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Dde_R0034 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Dde_R0015 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Dde_R0017 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Dde_R0019 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Dde_R0070 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Dde_R0059 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Dde_R0062 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Dde_R0063 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D Dde_R0060 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Dde_R0057 tRNA-Val K14237 tRNA-Val; tRNA Val D Dde_R0065 tRNA-Val K14237 tRNA-Val; tRNA Val D Dde_R0011 tRNA-Val K14237 tRNA-Val; tRNA Val D Dde_R0029 tRNA-Sec K14238 tRNA-Sec; tRNA Sec D Dde_R0001 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Dde_R0079 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Dde_R0020 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Dde_R0056 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Dde_R0004 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Dde_R0053 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Dde_R0023 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Dde_R0076 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Dde_R0082 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Dde_R0084 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Dde_R0087 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Dde_R0088 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Dde_R0089 ffs; SRP RNA; RNA component of signal recognition K01983 ffs; SRP RNA D Dde_R0085 rnpB; RNA component of RNaseP K01978 rnpB; M1 RNA D Dde_R0086 ssrA; tmRNA as predicted by Rfam (RF00023), score 201.83 K15035 ssrA; transfer-messenger RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D Dde_0127 PdxA-like dehydrogenase K22024 pdxA2; 4-phospho-D-threonate 3-dehydrogenase / 4-phospho-D-erythronate 3-dehydrogenase [EC:1.1.1.408 1.1.1.409] D Dde_0467 thiamine pyrophosphate TPP-binding domain-containing protein K00179 iorA; indolepyruvate ferredoxin oxidoreductase, alpha subunit [EC:1.2.7.8] D Dde_3539 Aldehyde dehydrogenase (FAD-independent) K07469 mop; aldehyde oxidoreductase [EC:1.2.99.7] D Dde_0572 Carboxynorspermidine synthase K27502 capadh; carboxyaminopropylagmatine dehydrogenase [EC:1.5.1.55] D Dde_1618 NAD(P)H dehydrogenase (quinone) K03923 mdaB; NADPH dehydrogenase (quinone) [EC:1.6.5.10] D Dde_2482 peptide methionine sulfoxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] D Dde_1002 peptide methionine sulfoxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] D Dde_1003 Peptide methionine sulfoxide reductase msrB K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] D Dde_0704 methionine-R-sulfoxide reductase K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] D Dde_2738 ferredoxin thioredoxin reductase beta chain K17892 FTRC; ferredoxin-thioredoxin reductase catalytic chain [EC:1.8.7.2] D Dde_1027 alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D Dde_2313 Redoxin domain protein K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D Dde_2138 Cytochrome-c3 hydrogenase K00437 hydB; [NiFe] hydrogenase large subunit [EC:1.12.2.1] D Dde_3756 Cytochrome-c3 hydrogenase K00437 hydB; [NiFe] hydrogenase large subunit [EC:1.12.2.1] D Dde_2137 periplasmic (NiFe) hydrogenase, small subunit, isozyme 1 K18008 hydA; [NiFe] hydrogenase small subunit [EC:1.12.2.1] D Dde_3755 hydrogenase (NiFe) small subunit HydA K18008 hydA; [NiFe] hydrogenase small subunit [EC:1.12.2.1] D Dde_2281 Iron only hydrogenase large subunit-like protein K00533 E1.12.7.2L; ferredoxin hydrogenase large subunit [EC:1.12.7.2] D Dde_0081 Periplasmic (fe) hydrogenase large subunit K00533 E1.12.7.2L; ferredoxin hydrogenase large subunit [EC:1.12.7.2] D Dde_2280 Periplasmic Fe hydrogenase small subunit K00534 E1.12.7.2S; ferredoxin hydrogenase small subunit [EC:1.12.7.2] D Dde_0082 Periplasmic (fe) hydrogenase small subunit precursor K00534 E1.12.7.2S; ferredoxin hydrogenase small subunit [EC:1.12.7.2] D Dde_3193 desulfoferrodoxin K05919 dfx; superoxide reductase [EC:1.15.1.2] D Dde_1791 Ferroxidase K02217 ftnA; ferritin [EC:1.16.3.2] D Dde_3636 oxidoreductase FAD/NAD(P)-binding domain protein K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D Dde_1251 oxidoreductase FAD/NAD(P)-binding domain protein K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D Dde_2793 arsenate reductase K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4] D Dde_2792 arsenate reductase K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4] D Dde_2820 protein tyrosine phosphatase K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4] D Dde_3544 Radical SAM domain protein K06937 E1.21.98.5; tetraether lipid synthase [EC:1.21.98.5] D Dde_1670 Radical SAM domain protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D Dde_3054 glycyl-radical enzyme activating protein family K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D Dde_0278 Anaerobic ribonucleoside-triphosphate reductase activating enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D Dde_3281 glycyl-radical enzyme activating protein family K20037 cutD; choline trimethylamine-lyase activating enzyme [EC:1.97.1.-] D Dde_2932 hypothetical protein K23300 qrcA; menaquinone reductase, multiheme cytochrome c subunit [EC:1.97.-.-] D Dde_2077 protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] D Dde_3688 hexapeptide repeat-containing transferase K00633 lacA; galactoside O-acetyltransferase [EC:2.3.1.18] D Dde_0665 Maltose O-acetyltransferase K00661 maa; maltose O-acetyltransferase [EC:2.3.1.79] D Dde_0188 Beta-lysine N-acetyltransferase K21935 ablB; beta-lysine N6-acetyltransferase [EC:2.3.1.264] D Dde_1806 apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269] D Dde_3171 GCN5-related N-acetyltransferase K03824 yhbS; putative acetyltransferase [EC:2.3.1.-] D Dde_0329 GCN5-related N-acetyltransferase K03826 yiaC; putative acetyltransferase [EC:2.3.1.-] D Dde_3024 GCN5-related N-acetyltransferase K03827 yjaB; putative acetyltransferase [EC:2.3.1.-] D Dde_3472 GCN5-related N-acetyltransferase K03828 yjgM; putative acetyltransferase [EC:2.3.1.-] D Dde_2098 leucyl/phenylalanyl-tRNA/protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6] D Dde_1404 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase K06898 larB; pyridinium-3,5-biscarboxylic acid mononucleotide synthase [EC:2.5.1.143] D Dde_3768 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D Dde_0587 ApbE family lipoprotein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D Dde_0128 type III effector Hrp-dependent outer protein K22129 dtnK; D-threonate/D-erythronate kinase [EC:2.7.1.219 2.7.1.220] D Dde_1644 degV family protein K07030 fakA; fatty acid kinase [EC:2.7.2.18] D Dde_1515 Conserved hypothetical protein CHP00159 K18672 dacA; diadenylate cyclase [EC:2.7.7.85] D Dde_0711 multi-sensor signal transduction histidine kinase K10819 E2.7.13.3; histidine kinase [EC:2.7.13.3] D Dde_3718 multi-sensor signal transduction histidine kinase K10819 E2.7.13.3; histidine kinase [EC:2.7.13.3] D Dde_1813 putative carboxylesterase K03928 yvaK; carboxylesterase [EC:3.1.1.1] D Dde_2123 Appr-1-p processing domain protein K23518 MACROD; O-acetyl-ADP-ribose deacetylase [EC:3.1.1.106] D Dde_2735 4-hydroxybenzoyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D Dde_3094 PHP domain protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97] D Dde_3221 protein of unknown function DUF89 K09116 K09116; damage-control phosphatase, subfamily I [EC:3.1.3.-] D Dde_1652 7TM receptor with intracellular metal dependent phosphohydrolase K07037 pgpH; cyclic-di-AMP phosphodiesterase PgpH [EC:3.1.4.-] D Dde_1942 response regulator receiver modulated metal dependent phosphohydrolase K07814 K07814; cyclic di-GMP phosphodiesterase [EC:3.1.4.-] D Dde_3456 metal dependent phosphohydrolase K25135 K25135; cyclic di-GMP phosphodiesterase [EC:3.1.4.-] D Dde_0074 hydrolase, TatD family K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D Dde_2807 nuclease (SNase domain-containing protein) K01174 nuc; micrococcal nuclease [EC:3.1.31.1] D Dde_2051 nuclease (SNase domain-containing protein) K01174 nuc; micrococcal nuclease [EC:3.1.31.1] D Dde_3421 glycoside hydrolase family 24 K01185 E3.2.1.17; lysozyme [EC:3.2.1.17] D Dde_1269 N-acyl-D-amino-acid deacylase K06015 E3.5.1.81; N-acyl-D-amino-acid deacylase [EC:3.5.1.81] D Dde_0013 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D Dde_1265 endoribonuclease L-PSP K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] D Dde_0809 endoribonuclease L-PSP K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] D Dde_2582 endoribonuclease L-PSP K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] D Dde_2703 protein of unknown function DUF62 K22205 E3.13.2.3; S-adenosyl-L-methionine hydrolase (adenosine-forming) [EC:3.13.2.3] D Dde_2045 YjeF-related protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6] D Dde_1266 diaminopropionate ammonia-lyase K01751 E4.3.1.15; diaminopropionate ammonia-lyase [EC:4.3.1.15] D Dde_3282 Formate C-acetyltransferase K20038 cutC; choline trimethylamine-lyase [EC:4.3.99.4] D Dde_3039 pyruvate formate-lyase PFL K20038 cutC; choline trimethylamine-lyase [EC:4.3.99.4] D Dde_3008 hypothetical protein K06864 larE; pyridinium-3,5-biscarboxylic acid mononucleotide sulfurtransferase [EC:4.4.1.37] D Dde_0766 protein of unknown function DUF111 K09121 larC; pyridinium-3,5-bisthiocarboxylic acid mononucleotide nickel chelatase [EC:4.99.1.12] D Dde_2668 peptidylprolyl isomerase FKBP-type K01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8] D Dde_0089 CoA-substrate-specific enzyme activase K23876 hgdC; (R)-2-hydroxyacyl-CoA dehydratese activating ATPase [EC:5.6.1.9] D Dde_0582 NADH:quinone oxidoreductase subunit RnfD K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2] D Dde_0581 NADH:quinone oxidoreductase subunit RnfC K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2] D Dde_0586 NADH:quinone oxidoreductase subunit RnfB K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2] D Dde_0498 Cation transport ATPase, iron related protein K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9] D Dde_1893 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10] C 99981 Carbohydrate metabolism D Dde_3594 sugar fermentation stimulation protein K06206 sfsA; sugar fermentation stimulation protein A D Dde_0765 CBS domain containing membrane protein K04767 acuB; acetoin utilization protein AcuB D Dde_1842 protein of unknown function DUF224 cysteine-rich region domain protein K18928 lldE; L-lactate dehydrogenase complex protein LldE D Dde_1843 iron-sulfur cluster binding protein K18929 lldF; L-lactate dehydrogenase complex protein LldF D Dde_1844 Lactate utilization protein B/C K00782 lldG; L-lactate dehydrogenase complex protein LldG D Dde_3244 Lactate utilization protein B/C K00782 lldG; L-lactate dehydrogenase complex protein LldG C 99982 Energy metabolism D Dde_0707 formate dehydrogenase subunit FdhD K02379 fdhD; FdhD protein D Dde_3516 formate dehydrogenase family accessory protein FdhD K02379 fdhD; FdhD protein D Dde_0286 Ferredoxin II K05337 fer; ferredoxin D Dde_0583 NADH:quinone oxidoreductase subunit RnfG K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G D Dde_0584 NADH:quinone oxidoreductase subunit RnfE K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E D Dde_0585 NADH:quinone oxidoreductase subunit RnfA K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A D Dde_3078 Fe-S cluster assembly protein NifU K13819 K13819; NifU-like protein D Dde_1111 Quinone-interacting membrane-bound oxidoreductase K16885 qmoA; quinone-modifying oxidoreductase, subunit QmoA D Dde_1112 Quinone-interacting membrane-bound oxidoreductase K16886 qmoB; quinone-modifying oxidoreductase, subunit QmoB D Dde_1113 Quinone-interacting membrane-bound oxidoreductase K16887 qmoC; quinone-modifying oxidoreductase, subunit QmoC D Dde_3667 flavodoxin K03839 fldA; flavodoxin I D Dde_0762 sulfite reductase, dissimilatory-type gamma subunit K23077 dsrC; dissimilatory sulfite reductase related protein C 99983 Lipid metabolism C 99984 Nucleotide metabolism C 99985 Amino acid metabolism D Dde_3275 Putative shell protein K04024 eutJ; ethanolamine utilization protein EutJ D Dde_3263 Sigma 54 interacting domain protein K04029 eutP; ethanolamine utilization protein EutP D Dde_3264 microcompartments protein K04031 eutS; ethanolamine utilization protein EutS D Dde_3590 protein of unknown function UPF0001 K06997 yggS; PLP dependent protein C 99986 Glycan metabolism D Dde_1853 hypothetical protein K07027 K07027; glycosyltransferase 2 family protein D Dde_3319 hypothetical protein K07027 K07027; glycosyltransferase 2 family protein C 99987 Cofactor metabolism D Dde_0719 Fe-S cluster domain protein K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein D Dde_3266 Respiratory-chain NADH dehydrogenase domain 51 kDa subunit K27271 pduS; cobalamin reductase C 99988 Secondary metabolism C 99999 Others D Dde_3208 GCN5-related N-acetyltransferase K09181 yfiQ; acetyltransferase B B 09192 Unclassified: genetic information processing C 99973 Transcription D Dde_2316 Tex-like protein K06959 tex; protein Tex D Dde_2720 protein of unknown function DUF370 K09777 remA; extracellular matrix regulatory protein A C 99974 Translation D Dde_1781 RNA-metabolising metallo-beta-lactamase K07576 K07576; metallo-beta-lactamase family protein C 99975 Protein processing D Dde_2100 ATP-dependent Clp protease adaptor protein ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS D Dde_2222 trigger factor K03545 tig; trigger factor D Dde_0706 formate dehydrogenase accessory protein K02380 fdhE; FdhE protein D Dde_3515 formate dehydrogenase accessory protein K02380 fdhE; FdhE protein D Dde_1088 SsrA-binding protein K03664 smpB; SsrA-binding protein D Dde_2140 hydrogenase assembly chaperone hypC/hupF K04653 hypC; hydrogenase expression/formation protein HypC D Dde_0364 hydrogenase expression/formation protein HypD K04654 hypD; hydrogenase expression/formation protein HypD D Dde_0363 hydrogenase expression/formation protein HypE K04655 hypE; hydrogenase expression/formation protein HypE D Dde_0555 (NiFe) hydrogenase maturation protein HypF K04656 hypF; hydrogenase maturation protein HypF D Dde_2739 glutaredoxin K06191 nrdH; glutaredoxin-like protein NrdH D Dde_2808 magnesium chelatase ChlI subunit K07391 comM; magnesium chelatase family protein D Dde_2773 magnesium chelatase ChlI subunit K07391 comM; magnesium chelatase family protein D Dde_3546 XshC-Cox1-family protein K07402 xdhC; xanthine dehydrogenase accessory factor D Dde_0037 protein of unknown function DUF107 K07403 nfeD; membrane-bound serine protease (ClpP class) C 99976 Replication and repair D Dde_3099 methylated-DNA/protein-cysteine methyltransferase K07443 ybaZ; methylated-DNA-protein-cysteine methyltransferase related protein D Dde_2442 DNA repair protein RadC K03630 radC; DNA repair protein RadC D Dde_1435 HhH-GPD family protein K07457 K07457; endonuclease III related protein D Dde_1093 Uncharacterized protein family UPF0102 K07460 yraN; putative endonuclease D Dde_4011 Excinuclease ABC C subunit domain protein K07461 K07461; putative endonuclease D Dde_1581 DNA protecting protein DprA K04096 smf; DNA processing protein D Dde_1998 AAA ATPase central domain protein K07478 ycaJ; putative ATPase D Dde_2849 transposase IS4 family protein K07481 K07481; transposase, IS5 family D Dde_3362 transposase IS3/IS911 family protein K07483 K07483; transposase D Dde_2871 transposase IS204/IS1001/IS1096/IS1165 family protein K07485 K07485; transposase D Dde_3548 putative transposase for insertion sequence element K07487 K07487; transposase D Dde_1802 putative transposase for insertion sequence element K07487 K07487; transposase D Dde_1721 putative transposase for insertion sequence element K07487 K07487; transposase D Dde_0714 transposase, putative K07488 K07488; transposase D Dde_0477 transposase IS200-family protein K07491 rayT; REP-associated tyrosine transposase D Dde_0624 Integrase catalytic region K07497 K07497; putative transposase D Dde_1298 Integrase catalytic region K07497 K07497; putative transposase D Dde_3350 Transposase-like Mu K07497 K07497; putative transposase D Dde_3361 Integrase catalytic region K07497 K07497; putative transposase D Dde_3364 Integrase catalytic region K07497 K07497; putative transposase D Dde_1397 Integrase catalytic region, ISDde3 K07497 K07497; putative transposase D Dde_3342 Integrase catalytic region K07497 K07497; putative transposase D Dde_0618 Integrase catalytic region K07497 K07497; putative transposase D Dde_0869 Integrase catalytic region ISDde2 K07497 K07497; putative transposase D Dde_1233 Integrase catalytic region K07497 K07497; putative transposase D Dde_2988 Integrase catalytic region, ISDde2 K07497 K07497; putative transposase D Dde_1673 Integrase catalytic region, ISDde2 K07497 K07497; putative transposase D Dde_1744 Integrase catalytic region, ISDde3 K07497 K07497; putative transposase D Dde_2906 transposase IS3/IS911 family protein K07497 K07497; putative transposase C 99979 Viral proteins C 99998 Others D Dde_3226 phage shock protein A, PspA K03969 pspA; phage shock protein A D Dde_0067 Uncharacterized protein family UPF0133 K09747 ebfC; nucleoid-associated protein EbfC B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D Dde_1615 amino acid transporter, AAT family K03293 TC.AAT; amino acid transporter, AAT family D Dde_2381 acriflavin resistance protein K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family D Dde_1563 acriflavin resistance protein K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family D Dde_3781 phosphate transporter K03306 TC.PIT; inorganic phosphate transporter, PiT family D Dde_1268 Na+/solute symporter K03307 TC.SSS; solute:Na+ symporter, SSS family D Dde_1337 Na+/solute symporter K03307 TC.SSS; solute:Na+ symporter, SSS family D Dde_1761 sodium:neurotransmitter symporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family D Dde_2371 sodium:neurotransmitter symporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family D Dde_1846 amino acid carrier protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D Dde_2852 amino acid carrier protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family C 99978 Cell growth D Dde_3029 cobyrinic acid ac-diamide synthase K07321 cooC; CO dehydrogenase maturation factor D Dde_2021 CgeB family protein K06320 cgeB; spore maturation protein CgeB D Dde_1715 CgeB family protein K06320 cgeB; spore maturation protein CgeB D Dde_2393 single-stranded nucleic acid binding R3H domain-containing protein K06346 jag; spoIIIJ-associated protein D Dde_0896 Resolvase domain-containing protein K06400 spoIVCA; site-specific DNA recombinase D Dde_1935 Resolvase domain-containing protein K06400 spoIVCA; site-specific DNA recombinase D Dde_0421 acylneuraminate cytidylyltransferase K07257 spsF; spore coat polysaccharide biosynthesis protein SpsF D Dde_3679 acylneuraminate cytidylyltransferase K07257 spsF; spore coat polysaccharide biosynthesis protein SpsF D Dde_1436 Peptidase M23 K22719 envC; murein hydrolase activator C 99993 Cell motility C 99995 Signaling proteins D Dde_1533 GTP-binding protein TypA K06207 typA; GTP-binding protein D Dde_2078 CBS domain containing membrane protein K07168 K07168; CBS domain-containing membrane protein D Dde_1653 PhoH family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins D Dde_1059 PhoH family protein K07175 phoH2; PhoH-like ATPase D Dde_0629 putative CBS domain and cyclic nucleotide-regulated nucleotidyltransferase K07182 K07182; CBS domain-containing protein D Dde_2479 protein of unknown function DUF520 K09767 yajQ; cyclic-di-GMP-binding protein C 99992 Structural proteins D Dde_1956 outer membrane lipoprotein carrier protein LolA K03634 lolA; outer membrane lipoprotein carrier protein D Dde_2301 VacJ family lipoprotein K04754 mlaA; phospholipid-binding lipoprotein MlaA D Dde_1150 17 kDa surface antigen K06077 slyB; outer membrane lipoprotein SlyB D Dde_1371 outer membrane chaperone Skp (OmpH) K06142 hlpA; outer membrane protein D Dde_1787 outer membrane chaperone Skp (OmpH) K06142 hlpA; outer membrane protein D Dde_1028 AsmA family protein K07289 asmA; AsmA protein D Dde_1682 AsmA family protein K07289 asmA; AsmA protein D Dde_0700 secretion protein HlyD family protein K01993 ABC-2.TX; HlyD family secretion protein D Dde_0825 biotin/lipoyl attachment domain-containing protein K02005 ABC.CD.TX; HlyD family secretion protein D Dde_0962 efflux transporter, RND family, MFP subunit K02005 ABC.CD.TX; HlyD family secretion protein D Dde_1340 efflux transporter, RND family, MFP subunit K02005 ABC.CD.TX; HlyD family secretion protein D Dde_0549 efflux transporter, RND family, MFP subunit K02005 ABC.CD.TX; HlyD family secretion protein D Dde_1478 cytochrome c biogenesis protein CcmE K02197 ccmE; cytochrome c-type biogenesis protein CcmE D Dde_2036 transcriptional regulator, XRE family K15539 rodZ; cytoskeleton protein RodZ D Dde_3265 microcompartments protein K27272 pduT; bacterial microcompartment shell protein C 99994 Others D Dde_2385 phosphate uptake regulator, PhoU K02039 phoU; phosphate transport system protein D Dde_0691 Integral membrane protein TerC K05794 terC; tellurite resistance protein TerC D Dde_1490 CutA1 divalent ion tolerance protein K03926 cutA; periplasmic divalent cation tolerance protein D Dde_3332 phosphonate C-P lyase system protein PhnK K05781 phnK; putative phosphonate transport system ATP-binding protein D Dde_2814 methyl-accepting chemotaxis sensory transducer K07216 hr; hemerythrin D Dde_0253 hemerythrin-like metal-binding protein K07216 hr; hemerythrin D Dde_3228 molybdenum cofactor synthesis domain protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D Dde_0119 DNA binding domain protein, excisionase family K07219 K07219; putative molybdopterin biosynthesis protein B B 09194 Poorly characterized C 99996 General function prediction only D Dde_2454 Colicin V production protein K03558 cvpA; membrane protein required for colicin V production D Dde_2000 transport-associated protein K04065 osmY; hyperosmotically inducible periplasmic protein D Dde_2750 transport-associated protein K04065 osmY; hyperosmotically inducible periplasmic protein D Dde_3603 Protein of unknown function DUF1998 K06877 K06877; DEAD/DEAH box helicase domain-containing protein D Dde_3705 export-related chaperone CsaA K06878 K06878; tRNA-binding protein D Dde_0963 Patatin K07001 K07001; NTE family protein D Dde_0819 Patatin K07001 K07001; NTE family protein D Dde_2471 HAD-superfamily hydrolase, subfamily IA, variant 3 K07025 K07025; putative hydrolase of the HAD superfamily D Dde_3215 Haloacid dehalogenase domain protein hydrolase K07025 K07025; putative hydrolase of the HAD superfamily D Dde_3064 ribonuclease BN K07058 K07058; membrane protein D Dde_2422 FxsA cytoplasmic membrane protein K07113 fxsA; UPF0716 protein FxsA D Dde_0577 LemA family protein K03744 lemA; LemA protein D Dde_1356 SlyX family protein K03745 slyX; SlyX protein D Dde_1503 Uncharacterized conserved protein UCP020606 K08984 yjdF; putative membrane protein D Dde_0205 SEC-C motif domain protein K09858 K09858; SEC-C motif domain protein D Dde_3700 hypothetical protein K09914 K09914; putative lipoprotein C 99997 Function unknown D Dde_1705 DRTGG domain protein K06873 K06873; uncharacterized protein D Dde_3243 DRTGG domain protein K06873 K06873; uncharacterized protein D Dde_2848 protein of unknown function DUF255 K06888 K06888; uncharacterized protein D Dde_2850 protein of unknown function DUF255 K06888 K06888; uncharacterized protein D Dde_3138 membrane protein K06889 K06889; uncharacterized protein D Dde_2601 protein of unknown function UPF0005 K06890 K06890; uncharacterized protein D Dde_1875 GPW/gp25 family protein K06903 W; Bacteriophage baseplate protein W D Dde_0946 GPW/gp25 family protein K06903 W; Bacteriophage baseplate protein W D Dde_1883 phage protein D-like protein K06905 D; Bacteriophage probable baseplate hub protein D Dde_0938 phage protein D-like protein K06905 D; Bacteriophage probable baseplate hub protein D Dde_1889 phage tail sheath protein K06907 FI; Bacteriophage tail sheath protein D Dde_0931 phage tail sheath protein K06907 FI; Bacteriophage tail sheath protein D Dde_1920 abortive phage resistance protein-like protein K06926 K06926; uncharacterized protein D Dde_1304 CoA-binding domain protein K06929 K06929; uncharacterized protein D Dde_3606 protein of unknown function UPF0153 K06940 K06940; uncharacterized protein D Dde_1303 protein of unknown function UPF0153 K06940 K06940; uncharacterized protein D Dde_0966 metal dependent phosphohydrolase K06950 K06950; uncharacterized protein D Dde_1591 metal dependent phosphohydrolase K06951 K06951; uncharacterized protein D Dde_1098 hypothetical protein K06960 K06960; uncharacterized protein D Dde_1104 pyridoxamine 5'-phosphate oxidase-related FMN-binding protein K07005 K07005; uncharacterized protein D Dde_1531 alpha/beta hydrolase fold protein K07019 K07019; uncharacterized protein D Dde_3083 Glyoxalase/bleomycin resistance protein/dioxygenase K07032 K07032; uncharacterized protein D Dde_1444 SufBD protein K07033 K07033; uncharacterized protein D Dde_0237 GPR1/FUN34/yaaH family protein K07034 K07034; uncharacterized protein D Dde_1278 amidohydrolase 2 K07045 K07045; uncharacterized protein D Dde_2736 amidohydrolase 2 K07045 K07045; uncharacterized protein D Dde_3001 domain of unknown function DUF1731 K07071 K07071; uncharacterized protein D Dde_2777 Protein of unknown function DUF318, transmembrane K07089 K07089; uncharacterized protein D Dde_3722 Protein of unknown function DUF318, transmembrane K07089 K07089; uncharacterized protein D Dde_0132 Protein of unknown function DUF318, transmembrane K07089 K07089; uncharacterized protein D Dde_0598 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Dde_2787 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Dde_3303 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Dde_0751 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Dde_1245 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Dde_3090 phosphodiesterase, MJ0936 family K07095 K07095; uncharacterized protein D Dde_3615 hypothetical protein K07096 K07096; uncharacterized protein D Dde_1891 metallophosphoesterase K07098 K07098; uncharacterized protein D Dde_2412 metallophosphoesterase K07098 K07098; uncharacterized protein D Dde_1022 hypothetical protein K07121 K07121; uncharacterized protein D Dde_0220 Sel1 domain protein repeat-containing protein K07126 K07126; uncharacterized protein D Dde_2492 AAA family ATPase K07133 K07133; uncharacterized protein D Dde_2466 FAD dependent oxidoreductase K07137 K07137; uncharacterized protein D Dde_3119 thiamine biosynthesis Thi4 protein K07137 K07137; uncharacterized protein D Dde_0997 Conserved hypothetical protein CHP01212 K07139 K07139; uncharacterized protein D Dde_2488 protein of unknown function DUF554 K07150 K07150; uncharacterized protein D Dde_1728 protein of unknown function DUF164 K07164 K07164; uncharacterized protein D Dde_2395 protein of unknown function DUF37 K08998 K08998; uncharacterized protein D Dde_2379 protein of unknown function DUF151 K08999 K08999; uncharacterized protein D Dde_2602 hypothetical protein K09004 K09004; uncharacterized protein D Dde_2055 GatB/YqeY family protein K09117 K09117; uncharacterized protein D Dde_0191 protein of unknown function DUF355 K09129 K09129; uncharacterized protein D Dde_2170 protein of unknown function DUF167 K09131 K09131; uncharacterized protein D Dde_2515 protein of unknown function DUF401 K09133 K09133; uncharacterized protein D Dde_2103 protein of unknown function DUF190 K09137 K09137; uncharacterized protein D Dde_2830 AMMECR1 domain protein K09141 K09141; uncharacterized protein D Dde_3704 protein of unknown function DUF711 K09157 K09157; uncharacterized protein D Dde_0015 protein of unknown function DUF116 K09729 K09729; uncharacterized protein D Dde_2535 ApbE family lipoprotein K09740 K09740; uncharacterized protein D Dde_1534 protein of unknown function DUF342 K09749 K09749; uncharacterized protein D Dde_1361 protein of unknown function DUF342 K09749 K09749; uncharacterized protein D Dde_1718 protein of unknown function DUF342 K09749 K09749; uncharacterized protein D Dde_0073 protein of unknown function DUF309 K09763 K09763; uncharacterized protein D Dde_3163 protein of unknown function DUF503 K09764 K09764; uncharacterized protein D Dde_3093 protein of unknown function DUF343 K09791 K09791; uncharacterized protein D Dde_0973 protein of unknown function DUF456 K09793 K09793; uncharacterized protein D Dde_2169 hypothetical protein K09794 K09794; uncharacterized protein D Dde_1438 protein of unknown function DUF610 YibQ K09798 K09798; uncharacterized protein D Dde_1982 protein of unknown function DUF330 K09857 K09857; uncharacterized protein D Dde_2062 Protein of unknown function DUF2062 K09928 K09928; uncharacterized protein D Dde_2624 Protein of unknown function DUF2064 K09931 K09931; uncharacterized protein D Dde_3186 Protein of unknown function DUF2065 K09937 K09937; uncharacterized protein D Dde_4001 hypothetical protein K09981 K09981; uncharacterized protein D Dde_2650 Uncharacterized conserved protein UCP018688 K01163 K01163; uncharacterized protein D Dde_1492 hypothetical protein K07502 yprB; uncharacterized protein D Dde_3780 putative phosphate transport regulator K07220 K07220; uncharacterized protein D Dde_4056 protein of unknown function DUF448 K07742 ylxR; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: May 18, 2024