+E Ribosome biogenesis KO
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Ribosome Biogenesis - Danio rerio (zebrafish)
%
!
AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
D 406275 fbl; rRNA 2'-O-methyltransferase fibrillarin K14563 NOP1; rRNA 2'-O-methyltransferase fibrillarin [EC:2.1.1.-]
D 394196 nop56; nucleolar protein 56 isoform 2 K14564 NOP56; nucleolar protein 56
D 494152 nop58; nucleolar protein 58 K14565 NOP58; nucleolar protein 58
D 321114 snu13b; SNU13 homolog, small nuclear ribonucleoprotein b (U4/U6.U5) K12845 SNU13; U4/U6 small nuclear ribonucleoprotein SNU13
D 393282 snu13a; SNU13 homolog, small nuclear ribonucleoprotein a (U4/U6.U5) K12845 SNU13; U4/U6 small nuclear ribonucleoprotein SNU13
C Box H/ACA snoRNPs
D 613144 dkc1; H/ACA ribonucleoprotein complex subunit DKC1 K11131 DKC1; H/ACA ribonucleoprotein complex subunit 4 [EC:5.4.99.-]
D 393950 gar1; H/ACA ribonucleoprotein complex subunit 1 K11128 GAR1; H/ACA ribonucleoprotein complex subunit 1
D 100003787 nhp2; H/ACA ribonucleoprotein complex subunit 2-like protein K11129 NHP2; H/ACA ribonucleoprotein complex subunit 2
D 445391 nop10; H/ACA ribonucleoprotein complex subunit 3 K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3
D 568328 naf1; H/ACA ribonucleoprotein complex non-core subunit NAF1 K14763 NAF1; H/ACA ribonucleoprotein complex non-core subunit NAF1
D 567601 shq1; protein SHQ1 homolog K14764 SHQ1; protein SHQ1
B 90S particles
C U3 small nucleolar RNA-associated proteins
D 393237 imp3; U3 small nucleolar ribonucleoprotein protein IMP3 K14560 IMP3; U3 small nucleolar ribonucleoprotein protein IMP3
D 436992 imp4; U3 small nucleolar ribonucleoprotein protein IMP4 K14561 IMP4; U3 small nucleolar ribonucleoprotein protein IMP4
D 323426 mphosph10; U3 small nucleolar ribonucleoprotein protein MPP10 K14559 MPP10; U3 small nucleolar RNA-associated protein MPP10
D 386642 ngdn; neuroguidin K14765 NGDN; U3 small nucleolar ribonucleoprotein protein LCP5
D 550241 rrp7a; ribosomal RNA-processing protein 7 homolog A K14545 RRP7; ribosomal RNA-processing protein 7
D 266990 pwp2h; PWP2 small subunit processome component K14558 PWP2; periodic tryptophan protein 2
D 321133 nop14; nucleolar protein 14 K14766 NOP14; nucleolar protein 14
D 447856 utp3; something about silencing protein 10 K14767 UTP3; U3 small nucleolar RNA-associated protein 3
D 406571 utp4; U3 small nucleolar RNA-associated protein 4 homolog K14548 UTP4; U3 small nucleolar RNA-associated protein 4
D 317637 wdr43; WD repeat-containing protein 43 K14546 UTP5; U3 small nucleolar RNA-associated protein 5
D 393107 utp6; U3 small nucleolar RNA-associated protein 6 homolog K14557 UTP6; U3 small nucleolar RNA-associated protein 6
D 393596 wdr46; WD repeat-containing protein 46 K14768 UTP7; U3 small nucleolar RNA-associated protein 7
D 334446 heatr1; HEAT repeat-containing protein 1 K14550 UTP10; U3 small nucleolar RNA-associated protein 10
D 336149 utp11; probable U3 small nucleolar RNA-associated protein 11 K14769 UTP11; U3 small nucleolar RNA-associated protein 11
D 321058 wdr3; WD repeat-containing protein 3 K14556 DIP2; U3 small nucleolar RNA-associated protein 12
D 492761 tbl3; transducin beta-like protein 3 K14555 UTP13; U3 small nucleolar RNA-associated protein 13
D 553498 si:dkey-251i10.3; uncharacterized protein LOC553498 K14567 UTP14; U3 small nucleolar RNA-associated protein 14
D 325106 utp15; U3 small nucleolar RNA-associated protein 15 homolog K14549 UTP15; U3 small nucleolar RNA-associated protein 15
D 368478 wdr75; WD repeat-containing protein 75 K14552 NAN1; NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
D 767797 utp18; U3 small nucleolar RNA-associated protein 18 homolog K14553 UTP18; U3 small nucleolar RNA-associated protein 18
D 554096 noc4l; nucleolar complex protein 4 homolog K14771 NOC4; U3 small nucleolar RNA-associated protein 19
D 557849 utp20; small subunit processome component 20 homolog K14772 UTP20; U3 small nucleolar RNA-associated protein 20
D 321745 wdr36; WD repeat-containing protein 36 K14554 UTP21; U3 small nucleolar RNA-associated protein 21
D 334362 nol6; nucleolar protein 6 K14544 UTP22; U3 small nucleolar RNA-associated protein 22
D 550514 utp23; rRNA-processing protein UTP23 homolog K14773 UTP23; U3 small nucleolar RNA-associated protein 23
D 550264 fcf1; rRNA-processing protein FCF1 homolog K14566 UTP24; U3 small nucleolar RNA-associated protein 24
D 286787 utp25; U3 small nucleolar RNA-associated protein 25 homolog K14774 UTP25; U3 small nucleolar RNA-associated protein 25
D 563247 rsl1d1; ribosomal L1 domain-containing protein 1 K14775 UTP30; ribosome biogenesis protein UTP30
C Helicases
D 569118 ddx10; probable ATP-dependent RNA helicase DDX10 K14776 DDX10; ATP-dependent RNA helicase DDX10/DBP4 [EC:5.6.2.7]
D 321127 ddx18; ATP-dependent RNA helicase DDX18 K13179 DDX18; ATP-dependent RNA helicase DDX18/HAS1 [EC:5.6.2.7]
D 553715 ddx47; probable ATP-dependent RNA helicase DDX47 K14777 DDX47; ATP-dependent RNA helicase DDX47/RRP3 [EC:5.6.2.7]
D 386632 ddx49; probable ATP-dependent RNA helicase DDX49 K14778 DDX49; ATP-dependent RNA helicase DDX49/DBP8 [EC:5.6.2.7]
D 407696 ddx52; probable ATP-dependent RNA helicase DDX52 K14779 DDX52; ATP-dependent RNA helicase DDX52/ROK1 [EC:5.6.2.7]
D 321931 dhx15; pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 K12820 DHX15; pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:5.6.2.6]
D 100009635 dhx37; probable ATP-dependent RNA helicase DHX37 K14780 DHX37; ATP-dependent RNA helicase DHX37/DHR1 [EC:5.6.2.6]
D 394053 eif4a3; eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
C GTPase
D 553241 bms1; ribosome biogenesis protein BMS1 homolog K14569 BMS1; ribosome biogenesis protein BMS1
C RNase
D 567505 drosha; ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
D 100333127 rexo4; RNA exonuclease 4 K18327 REXO4; RNA exonuclease 4 [EC:3.1.-.-]
D 323746 dbr1; lariat debranching enzyme K18328 DBR1; lariat debranching enzyme [EC:3.1.-.-]
C Kinase
D 30488 csnk2a2a; casein kinase 2, alpha prime polypeptide a K03097 CSNK2A; casein kinase II subunit alpha [EC:2.7.11.1]
D 30502 csnk2a1; casein kinase II subunit alpha K03097 CSNK2A; casein kinase II subunit alpha [EC:2.7.11.1]
D 415254 zgc:86598; STKc_CK2_alpha domain-containing protein K03097 CSNK2A; casein kinase II subunit alpha [EC:2.7.11.1]
D 556379 csnk2a2b; casein kinase II subunit alpha' K03097 CSNK2A; casein kinase II subunit alpha [EC:2.7.11.1]
D 100535532 csnk2a4; casein kinase II subunit alpha-like K03097 CSNK2A; casein kinase II subunit alpha [EC:2.7.11.1]
D 30428 csnk2b; casein kinase II subunit beta K03115 CSNK2B; casein kinase II subunit beta
C Other 90S particles
D 559477 aatf; protein AATF isoform 1 K14782 AATF; protein AATF/BFR2
D 450027 cmss1; protein CMSS1 K14784 CMS1; protein CMS1
D 678588 emg1; ribosomal RNA small subunit methyltransferase NEP1 K14568 EMG1; rRNA small subunit pseudouridine methyltransferase Nep1 [EC:2.1.1.260]
D 553568 abt1; activator of basal transcription 1 K14785 ESF2; ESF2/ABP1 family protein
D 402800 kri1; protein KRI1 homolog K14786 KRI1; protein KRI1
D 724049 krr1; KRR1 small subunit processome component homolog K06961 KRR1; ribosomal RNA assembly protein
D 387255 rbm19; probable RNA-binding protein 19 K14787 MRD1; multiple RNA-binding domain-containing protein 1
D 393617 nat10; RNA cytidine acetyltransferase K14521 NAT10; N-acetyltransferase 10 [EC:2.3.1.-]
D 767714 ncl; nucleolin K11294 NCL; nucleolin
D 393206 nol10; nucleolar protein 10 K14788 NOL10; ribosome biogenesis protein ENP2
D 100332577 nop9; nucleolar protein 9 isoform X1 K14790 NOP9; nucleolar protein 9
D 368253 pinx1; PIN2/TERF1-interacting telomerase inhibitor 1 K11135 PINX1; Pin2-interacting protein X1
D 393262 pwp1; periodic tryptophan protein 1 homolog K14791 PWP1; periodic tryptophan protein 1
D 445388 rcl1; RNA 3'-terminal phosphate cyclase-like protein K11108 RCL1; RNA 3'-terminal phosphate cyclase-like protein
D 794079 pdcd11; protein RRP5 homolog K14792 RRP5; rRNA biogenesis protein RRP5
D 402808 rrp9; U3 small nucleolar RNA-interacting protein 2 K14793 RRP9; ribosomal RNA-processing protein 9
D 563195 rrp12; RRP12-like protein K14794 RRP12; ribosomal RNA-processing protein 12
D 321183 rrp36; ribosomal RNA processing protein 36 homolog K14795 RRP36; ribosomal RNA-processing protein 36
D 393097 dcaf13; DDB1- and CUL4-associated factor 13 K11806 DCAF13; DDB1- and CUL4-associated factor 13
B Pre-40S particles
C Kinases
D 406268 riok1; serine/threonine-protein kinase RIO1 K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D 407084 riok2; serine/threonine-protein kinase RIO2 K07179 RIOK2; RIO kinase 2 [EC:2.7.11.1]
C Export and cytoplasmic maturation factors
D 445162 dimt1l; probable dimethyladenosine transferase K14191 DIM1; 18S rRNA (adenine1779-N6/adenine1780-N6)-dimethyltransferase [EC:2.1.1.183]
D 572367 bud23; probable 18S rRNA (guanine-N(7))-methyltransferase K19306 BUD23; 18S rRNA (guanine1575-N7)-methyltransferase [EC:2.1.1.309]
D 449776 mettl5; rRNA N6-adenosine-methyltransferase METTL5 K24418 METTL5; rRNA N6-adenosine-methyltransferase METTL5
D 394081 bysl; bystin K14797 ENP1; essential nuclear protein 1
D 436587 ltv1; protein LTV1 homolog K14798 LTV1; protein LTV1
D 557254 nob1; RNA-binding protein NOB1 isoform X3 K11883 NOB1; RNA-binding protein NOB1
D 393520 pno1; RNA-binding protein PNO1 K11884 PNO1; RNA-binding protein PNO1
D 30572 ran; GTP-binding nuclear protein Ran K07936 RAN; GTP-binding nuclear protein Ran
D 415208 zgc:86811; adenylate kinase isoenzyme 6 K18532 AK6; adenylate kinase [EC:2.7.4.3]
D 325037 tsr1; pre-rRNA-processing protein TSR1 homolog K14799 TSR1; pre-rRNA-processing protein TSR1
D 317639 tsr2; pre-rRNA-processing protein TSR2 homolog K14800 TSR2; pre-rRNA-processing protein TSR2
D 436643 tsr3; ribosome biogenesis protein TSR3 homolog K09140 TSR3; rRNA small subunit aminocarboxypropyltransferase [EC:2.5.1.157]
D 393192 pdcd2l; programmed cell death protein 2-like K14801 TSR4; pre-rRNA-processing protein TSR4
D 393370 pdcd2; programmed cell death protein 2 K14801 TSR4; pre-rRNA-processing protein TSR4
D 100005069 rps19bp1; ribosomal protein S19 binding protein 1 K26536 RPS19BP1; active regulator of SIRT1
D 561138 xpo1b; exportin-1 K14290 XPO1; exportin-1
D 558395 xpo1a; exportin-1 K14290 XPO1; exportin-1
D 570700 kpnb1; importin subunit beta-1 K14293 KPNB1; importin subunit beta-1
D 562607 tnpo1; transportin-1 K18752 TNPO1; transportin-1
D 553305 ipo4; importin-4 K20221 IPO4; importin-4
D 569455 kpnb3; importin-5 K20222 IPO5; importin-5
D 321739 ipo7; importin-7 K20223 IPO7; importin-7
D 406860 ipo9; importin-9 K20224 IPO9; importin-9
C Other pre-40S particles
D 100330943 atp8a2; phospholipid-transporting ATPase IB isoform X2 K14802 DRS2; phospholipid-transporting ATPase [EC:7.6.2.1]
D 394189 eif3ja; eukaryotic translation initiation factor 3 subunit J-A K03245 EIF3J; translation initiation factor 3 subunit J
D 406823 eif3jb; eukaryotic translation initiation factor 3 subunit J-B K03245 EIF3J; translation initiation factor 3 subunit J
D 406324 abce1; ATP-binding cassette sub-family E member 1 K06174 ABCE1; ATP-binding cassette, sub-family E, member 1
B Pre-60S particles
C Helicases
D 322206 ddx5; probable ATP-dependent RNA helicase DDX5 isoform 2 K12823 DDX5; ATP-dependent RNA helicase DDX5/DBP2 [EC:5.6.2.7]
D 321127 ddx18; ATP-dependent RNA helicase DDX18 K13179 DDX18; ATP-dependent RNA helicase DDX18/HAS1 [EC:5.6.2.7]
D 799650 ddx21; nucleolar RNA helicase 2 K16911 DDX21; ATP-dependent RNA helicase DDX21 [EC:5.6.2.7]
D 553462 ddx24; ATP-dependent RNA helicase DDX24 K14805 DDX24; ATP-dependent RNA helicase DDX24/MAK5 [EC:5.6.2.7]
D 378844 ddx27; probable ATP-dependent RNA helicase DDX27 K13181 DDX27; ATP-dependent RNA helicase DDX27 [EC:5.6.2.7]
D 325248 ddx31; probable ATP-dependent RNA helicase DDX31 K14806 DDX31; ATP-dependent RNA helicase DDX31/DBP7 [EC:5.6.2.7]
D 445387 ddx51; ATP-dependent RNA helicase DDX51 K14807 DDX51; ATP-dependent RNA helicase DDX51/DBP6 [EC:5.6.2.7]
D 286777 ddx54; ATP-dependent RNA helicase DDX54 K14808 DDX54; ATP-dependent RNA helicase DDX54/DBP10 [EC:5.6.2.7]
D 286745 ddx55; ATP-dependent RNA helicase DDX55 K14809 DDX55; ATP-dependent RNA helicase DDX55/SPB4 [EC:5.6.2.7]
D 445399 ddx56; probable ATP-dependent RNA helicase DDX56 K14810 DDX56; ATP-dependent RNA helicase DDX56/DBP9 [EC:5.6.2.7]
D 406795 mtrex; exosome RNA helicase MTR4 K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
C GTPases
D 321897 gnl3; guanine nucleotide-binding protein-like 3 K14538 NUG1; nuclear GTP-binding protein
D 442932 gnl3l; guanine nucleotide-binding protein-like 3-like protein K14538 NUG1; nuclear GTP-binding protein
D 793727 gnl2; nucleolar GTP-binding protein 2 K14537 NUG2; nuclear GTP-binding protein
D 334050 gtpbp4; nucleolar GTP-binding protein 1 K06943 NOG1; nucleolar GTP-binding protein
D 323464 lsg1; large subunit GTPase 1 homolog K14539 LSG1; large subunit GTPase 1 [EC:3.6.1.-]
D 568741 eftud1; elongation factor-like GTPase 1 K14536 RIA1; ribosome assembly protein 1 [EC:3.6.5.-]
C RNases
D 393717 smfn; small fragment nuclease precursor K13288 orn; oligoribonuclease [EC:3.1.-.-]
D 564551 rexo1; RNA exonuclease 1 homolog K14570 REX1; RNA exonuclease [EC:3.1.-.-]
D 394008 xrn1; 5'-3' exoribonuclease 1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
D 321940 xrn2; 5'-3' exoribonuclease 2 K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
D RNase MRP
E 799016 pop1; ribonucleases P/MRP protein subunit POP1 K01164 POP1; ribonuclease P/MRP protein subunit POP1 [EC:3.1.26.5]
E 553787 pop4; ribonuclease P protein subunit p29 K03538 POP4; ribonuclease P protein subunit POP4 [EC:3.1.26.5]
E 541421 pop5; ribonuclease P/MRP protein subunit POP5 K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5]
E 541352 rpp30; ribonuclease P protein subunit p30 K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5]
E 100004610 pop7; ribonuclease P protein subunit p20 K14527 RPP20; ribonuclease P/MRP protein subunit RPP20 [EC:3.1.26.5]
E 100000532 rpp25a; ribonuclease P protein subunit p25a K14525 RPP25; ribonucleases P/MRP protein subunit RPP25 [EC:3.1.26.5]
E 436813 rpp25l; ribonuclease P protein subunit p25-like protein K14525 RPP25; ribonucleases P/MRP protein subunit RPP25 [EC:3.1.26.5]
E 101885168 rpp25b; ribonuclease P protein subunit p25b K14525 RPP25; ribonucleases P/MRP protein subunit RPP25 [EC:3.1.26.5]
E 436798 rpp38; ribonuclease P protein subunit p38 K14523 RPP38; ribonucleases P/MRP protein subunit RPP38 [EC:3.1.26.5]
E 415238 rpp40; ribonuclease P protein subunit p40 K14530 RPP40; ribonucleases P/MRP protein subunit RPP40 [EC:3.1.26.5]
C Kinases
D 567715 nol9; polynucleotide 5'-hydroxyl-kinase NOL9 K06947 GRC3; polynucleotide 5'-hydroxyl-kinase GRC3/NOL9 [EC:2.7.1.-]
C Export and cytoplasmic maturation factors
D 336770 abcf2a; ATP-binding cassette sub-family F member 2a K06185 ABCF2; ATP-binding cassette, subfamily F, member 2
D 100000576 abcf2b; ATP-binding cassette, sub-family F, member 2b K06185 ABCF2; ATP-binding cassette, subfamily F, member 2
D 336984 dnajc21; dnaJ homolog subfamily C member 21 K09506 DNAJA5; DnaJ homolog subfamily A member 5
D 386850 eif6; eukaryotic translation initiation factor 6 K03264 EIF6; translation initiation factor 6
D 30671 hsp70.3; heat shock cognate 70-kd protein, tandem duplicate 3 K03283 HSPA1_6_8; heat shock 70kDa protein 1/6/8
D 393586 hsc70; uncharacterized protein LOC393586 K03283 HSPA1_6_8; heat shock 70kDa protein 1/6/8
D 573376 hspa8; heat shock cognate 71 kDa protein K03283 HSPA1_6_8; heat shock 70kDa protein 1/6/8
D 560210 hsp70l; heat shock cognate 70-kd protein, like K03283 HSPA1_6_8; heat shock 70kDa protein 1/6/8
D 798846 hspa1b; Heat shock 70 kDa protein-like K03283 HSPA1_6_8; heat shock 70kDa protein 1/6/8
D 100535101 hsp70.2; heat shock cognate 70-kd protein, tandem duplicate 2 K03283 HSPA1_6_8; heat shock 70kDa protein 1/6/8
D 100126123 hsp70.1; heat shock cognate 70-kd protein, tandem duplicate 1 K03283 HSPA1_6_8; heat shock 70kDa protein 1/6/8
D 562935 hspa8b; heat shock protein family A (Hsp70) member 8b K03283 HSPA1_6_8; heat shock 70kDa protein 1/6/8
D 550350 mrto4; mRNA turnover protein 4 homolog K14815 MRT4; mRNA turnover protein 4
D 541444 nmd3; 60S ribosomal export protein NMD3 K07562 NMD3; 60S ribosomal export protein NMD3
D 323865 nxf1; nuclear RNA export factor 1 K14284 NXF; nuclear RNA export factor
D 751719 nxf1a; uncharacterized protein LOC751719 K14284 NXF; nuclear RNA export factor
D 751738 nxt2; NTF2-related export protein 2 K14285 NXT1_2; NTF2-related export protein 1/2
D 30572 ran; GTP-binding nuclear protein Ran K07936 RAN; GTP-binding nuclear protein Ran
D 407703 znf622; zinc finger protein 622 K14816 REI1; pre-60S factor REI1
D 394096 sbds; ribosome maturation protein SBDS K14574 SDO1; ribosome maturation protein SDO1
D 100332622 spata5; spermatogenesis-associated protein 5 K14575 AFG2; AAA family ATPase
D 767648 afg2b; spermatogenesis-associated protein 5-like protein 1 K26051 SPATA5L1; ribosome biogenesis protein SPATA5L1 [EC:3.6.4.10]
D 100003640 cinp; cyclin-dependent kinase 2-interacting protein isoform 1 K26052 CINP; cyclin-dependent kinase 2-interacting protein
D 286778 airim; AFG2-interacting ribosome maturation factor K26053 C1ORF109; ribosome biogenesis protein C1orf109
D 561138 xpo1b; exportin-1 K14290 XPO1; exportin-1
D 558395 xpo1a; exportin-1 K14290 XPO1; exportin-1
D 570700 kpnb1; importin subunit beta-1 K14293 KPNB1; importin subunit beta-1
D 562607 tnpo1; transportin-1 K18752 TNPO1; transportin-1
D 553305 ipo4; importin-4 K20221 IPO4; importin-4
D 569455 kpnb3; importin-5 K20222 IPO5; importin-5
D 321739 ipo7; importin-7 K20223 IPO7; importin-7
D 406860 ipo9; importin-9 K20224 IPO9; importin-9
D 573998 dusp12; dual specificity protein phosphatase 12 K14819 DUSP12; dual specificity phosphatase 12 [EC:3.1.3.16 3.1.3.48]
C 5-FMC complex
D 327196 tex10; testis-expressed protein 10 homolog K14827 IPI1; pre-rRNA-processing protein IPI1
D 445819 wdr18; WD repeat-containing protein 18 K14829 IPI3; pre-rRNA-processing protein IPI3
D 561321 las1l; ribosomal biogenesis protein LAS1L K16912 LAS1; ribosomal biogenesis protein LAS1
D 100003680 pelp1; proline-, glutamic acid- and leucine-rich protein 1 K16913 PELP1; proline-, glutamic acid- and leucine-rich protein 1
D 564950 senp3a; sentrin-specific protease 3a K08593 SENP3; sentrin-specific protease 3 [EC:3.4.22.68]
D 565123 senp3b; sentrin-specific protease 3b K08593 SENP3; sentrin-specific protease 3 [EC:3.4.22.68]
C Ribosome quality control proteins
D 100000122 si:dkey-175g6.5; E3 ubiquitin-protein ligase listerin K22377 LTN1; E3 ubiquitin-protein ligase listerin [EC:2.3.2.27]
D 445817 tcf25; transcription factor 25 K24970 TCF25; transcription factor 25
D 767767 zgc:153813; uncharacterized protein LOC767767 K24971 NEMF; nuclear export mediator factor NEMF
D 327197 vcp; transitional endoplasmic reticulum ATPase K13525 VCP; transitional endoplasmic reticulum ATPase
D 563679 zgc:136908; Transitional endoplasmic reticulum ATPase K13525 VCP; transitional endoplasmic reticulum ATPase
D 327447 nploc4; nuclear protein localization protein 4 homolog K14015 NPLOC4; nuclear protein localization protein 4
D 436724 ufd1l; ubiquitin recognition factor in ER-associated degradation protein 1 K14016 UFD1; ubiquitin fusion degradation protein 1
D 563207 ptrhd1; putative peptidyl-tRNA hydrolase PTRHD1 K05969 PTRHD1; peptidyl-tRNA hydrolase PTRHD1 [EC:3.1.1.29]
D 553307 ankzf1; ankyrin repeat and zinc finger domain-containing protein 1 isoform X1 K26089 ANKZF1; ankyrin repeat and zinc finger domain-containing protein 1
C Other pre-60S particles
D 402823 bxdc2; ribosome biogenesis protein BRX1 homolog K14820 BRX1; ribosome biogenesis protein BRX1
D 559352 znf593; zinc finger protein 593 K14821 BUD20; bud site selection protein 20
D 559409 ccdc86; coiled-coil domain-containing protein 86 K14822 CGR1; rRNA-processing protein CGR1
D 335049 ebna1bp2; probable rRNA-processing protein EBP2 K14823 EBP2; rRNA-processing protein EBP2
D 777627 bop1; ribosome biogenesis protein bop1 K14824 ERB1; ribosome biogenesis protein ERB1
D 393374 tmed5; transmembrane emp24 domain-containing protein 5 precursor K14825 TMED5; p24 family protein gamma-2
D 336470 pak1ip1; p21-activated protein kinase-interacting protein 1-like K14830 MAK11; protein MAK11
D 192312 mak16; protein MAK16 homolog K14831 MAK16; protein MAK16
D 550440 cebpz; CCAAT/enhancer-binding protein zeta K14832 MAK21; ribosome biogenesis protein MAK21
D 555704 mdn1; midasin K14572 MDN1; midasin
D 553616 nip7; 60S ribosome subunit biogenesis protein NIP7 homolog K07565 NIP7; 60S ribosome subunit biogenesis protein NIP7
D 58013 noc2l; nucleolar complex protein 2 homolog K14833 NOC2; nucleolar complex protein 2
D 321289 noc3l; nucleolar complex protein 3 homolog K14834 NOC3; nucleolar complex protein 3
D 321130 nop2; probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase K14835 NOP2; 25S rRNA (cytosine2870-C5)-methyltransferase [EC:2.1.1.310]
D 393291 rbm28; RNA-binding protein 28 K14573 NOP4; nucleolar protein 4
D 613021 nol8; nucleolar protein 8 K14836 NOP8; nucleolar protein 8
D 436655 rbm34; RNA-binding protein 34 K14837 NOP12; nucleolar protein 12
D 317644 nifk; MKI67 FHA domain-interacting nucleolar phosphoprotein K14838 NOP15; nucleolar protein 15
D 322404 nop53; ribosome biogenesis protein NOP53 K14840 NOP53; nucleolar protein 53
D 558996 wdr74; WD repeat-containing protein 74 K14841 NSA1; ribosome biogenesis protein NSA1
D 321769 nsa2; ribosome biogenesis protein NSA2 homolog K14842 NSA2; ribosome biogenesis protein NSA2
D 30228 pes; pescadillo K14843 PES1; pescadillo
D 553068 pum3; pumilio homolog 3 K14844 PUF6; pumilio homology domain family member 6
D 393262 pwp1; periodic tryptophan protein 1 homolog K14791 PWP1; periodic tryptophan protein 1
D 494170 dxo; decapping and exoribonuclease protein K14845 RAI1; RAT1-interacting protein
D 560815 riox1; ribosomal oxygenase 1 K16914 RIOX1; protein-L-histidine (3S)-3-hydroxylase / [histone H3]-trimethyl-L-lysine4/36 demethylase [EC:1.14.11.79 1.14.11.67 1.14.11.69]
D 393308 riox2; ribosomal oxygenase 2 K21760 RIOX2; protein-L-histidine (3S)-3-hydroxylase / [histone H3]-trimethyl-L-lysine9 demethylase [EC:1.14.11.79 1.14.11.66]
D 406805 nvl; nuclear valosin-containing protein-like K14571 RIX7; ribosome biogenesis ATPase
D 415250 rpf1; ribosome production factor 1 isoform 1 K14846 RPF1; ribosome production factor 1
D 406587 rpf2; ribosome production factor 2 homolog K14847 RPF2; ribosome production factor 2
D 445115 grwd1; glutamate-rich WD repeat-containing protein 1 K14848 RRB1; ribosome assembly protein RRB1
D 321059 rrp1; ribosomal RNA processing protein 1 homolog A K14849 RRP1; ribosomal RNA-processing protein 1
D 797198 rrp8; ribosomal RNA-processing protein 8 isoform X1 K14850 RRP8; ribosomal RNA-processing protein 8 [EC:2.1.1.287]
D 563195 rrp12; RRP12-like protein K14794 RRP12; ribosomal RNA-processing protein 12
D 393260 nol12; nucleolar protein 12 K14851 RRP17; ribosomal RNA-processing protein 17
D 337399 rrs1; ribosome biogenesis regulatory protein homolog K14852 RRS1; regulator of ribosome biosynthesis
D 553606 nle1; notchless protein homolog 1 K14855 RSA4; ribosome assembly protein 4
D 286746 sdad1; protein SDA1 homolog K14856 SDA1; protein SDA1
D 321247 ftsj3; pre-rRNA 2'-O-ribose RNA methyltransferase FTSJ3 K14857 SPB1; AdoMet-dependent rRNA methyltransferase SPB1 [EC:2.1.1.-]
D 317739 ppan; suppressor of SWI4 1 homolog K14859 SSF1_2; ribosome biogenesis protein SSF1/2
D 553647 tma16; translation machinery-associated protein 16 K14860 TMA16; translation machinery-associated protein 16
D 100536352 urb1; nucleolar pre-ribosomal-associated protein 1 K14861 URB1; nucleolar pre-ribosomal-associated protein 1
D 570267 urb2; unhealthy ribosome biogenesis protein 2 homolog isoform 1 K14862 URB2; nucleolar pre-ribosomal-associated protein 2
D 321652 wdr12; ribosome biogenesis protein wdr12 K14863 WDR12; ribosome biogenesis protein
D 334271 nufip1; nuclear fragile X mental retardation-interacting protein 1 K23308 NUFIP1; nuclear fragile X mental retardation-interacting protein 1
D 393243 znhit3; zinc finger HIT domain-containing protein 3 K23309 ZNHIT3; zinc finger HIT domain-containing protein 3
B Other ribosome biogenesis factors
C 541348 bccip; protein BCCIP homolog K15262 BCP1; protein BCP1
C 393652 lyar; cell growth-regulating nucleolar protein K15263 LYER; cell growth-regulating nucleolar protein
C 494106 nsun4; 5-methylcytosine rRNA methyltransferase NSUN4 K21970 NSUN4; 5-methylcytosine rRNA methyltransferase NSUN4 [EC:2.1.1.-]
C 406690 nsun5; probable 28S rRNA (cytosine-C(5))-methyltransferase K15264 NSUN5; 25S rRNA (cytosine2278-C5)-methyltransferase [EC:2.1.1.311]
C 767802 tfb1m; dimethyladenosine transferase 1, mitochondrial K15266 TFB1M; dimethyladenosine transferase 1, mitochondrial [EC:2.1.1.-]
C 563095 mrm1; rRNA methyltransferase 1, mitochondrial K15507 MRM1; 21S rRNA (GM2251-2'-O)-methyltransferase [EC:2.1.1.-]
C 558558 bmt2; S-adenosylmethionine sensor upstream of mTORC1 K18849 BMT2; 25S rRNA (adenine2142-N1)-methyltransferase [EC:2.1.1.286]
C 550390 mrm3a; rRNA methyltransferase 3A, mitochondrial K20095 RNMTL1; 16S rRNA (guanosine(1370)-2'-O)-methyltransferase [EC:2.1.1.-]
C 792923 mrm3b; rRNA methyltransferase 3B, mitochondrial K20095 RNMTL1; 16S rRNA (guanosine(1370)-2'-O)-methyltransferase [EC:2.1.1.-]
C 564410 zcchc4; rRNA N6-adenosine-methyltransferase ZCCHC4 K25177 ZCCHC4; rRNA N6-adenosine-methyltransferase ZCCHC4 [EC:2.1.1.-]
C 768189 ddx28; probable ATP-dependent RNA helicase DDX28 K20096 DDX28; ATP-dependent RNA helicase DDX28 [EC:5.6.2.7]
C 796505 dhx33; ATP-dependent RNA helicase DHX33 K17820 DHX33; ATP-dependent RNA helicase DHX33 [EC:5.6.2.6]
C 556484 ighmbp2; DNA-binding protein SMUBP-2 K19036 IGHMBP2; ATP-dependent RNA/DNA helicase IGHMBP2 [EC:5.6.2.5 5.6.2.3]
C 558447 isg20l2; interferon-stimulated 20 kDa exonuclease-like 2 K18329 ISG20L2; interferon-stimulated 20 kDa exonuclease-like 2 [EC:3.1.-.-]
C 436936 kdm8; lysine-specific demethylase 8 K10277 KDM8; [protein]-arginine 3-hydroxylase / protease [EC:1.14.11.73 3.4.-.-]
C 327070 phf6; PHD finger protein 6 K23310 PHF6; PHD finger protein 6
C 569087 eral1; GTPase Era, mitochondrial K03595 era; GTPase
C 566307 nopchap1; uncharacterized protein C12orf45 homolog K26142 NOPCHAP1; NOP protein chaperone 1
C 323462 pa2g4b; proliferation-associated protein 2G4b K26736 PA2G4; ERBB-3 binding protein
C 368737 pa2g4a; proliferation-associated protein 2G4a K26736 PA2G4; ERBB-3 binding protein
C 100150980 mtg1; mitochondrial ribosome-associated GTPase 1 isoform 1 K19828 MTG1; mitochondrial GTPase 1
C 100001905 mtg2; mitochondrial ribosome-associated GTPase 2 isoform X1 K03979 obgE; GTPase [EC:3.6.5.-]
C 564706 noa1; nitric oxide-associated protein 1 K19832 NOA1; nitric oxide-associated protein 1
C 101883563 nitric oxide-associated protein 1-like K19832 NOA1; nitric oxide-associated protein 1
#
AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
D 394196 nop56; nucleolar protein 56 isoform 2 K14564 NOP56; nucleolar protein 56
D 337010 rpl7a; 60S ribosomal protein L7a K02936 RP-L7Ae; large subunit ribosomal protein L7Ae
D 751694 zgc:153325; uncharacterized protein LOC751694 K02936 RP-L7Ae; large subunit ribosomal protein L7Ae
C Box H/ACA snoRNPs
D 613144 dkc1; H/ACA ribonucleoprotein complex subunit DKC1 K11131 DKC1; H/ACA ribonucleoprotein complex subunit 4 [EC:5.4.99.-]
D 445391 nop10; H/ACA ribonucleoprotein complex subunit 3 K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3
B rRNA transcription factors
B rRNA modification factors
C 16S rRNA modification factors
C 23S rRNA modification factors
D 555586 mrm2; rRNA methyltransferase 2, mitochondrial K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
B ribosomal protein modification factors
B rRNA processing factors
C 567505 drosha; ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
B rRNA helicases
B GTPases
C 569087 eral1; GTPase Era, mitochondrial K03595 era; GTPase
C 100001905 mtg2; mitochondrial ribosome-associated GTPase 2 isoform X1 K03979 obgE; GTPase [EC:3.6.5.-]
B Other maturation factors
C 797343 yrdc; yrdC domain-containing protein, mitochondrial K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
#
ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024