+E Messenger RNA Biogenesis KO
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Messenger RNA Biogenesis - Danio rerio (zebrafish)
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AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
E 562801 rnmt; mRNA cap guanine-N7 methyltransferase K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E 405803 rngtt; mRNA-capping enzyme K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74]
E 405897 cdk7; cyclin-dependent kinase 7 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 393102 cmtr1; cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 K14589 CMTR1; cap1 methyltransferase [EC:2.1.1.57]
E 406742 cmtr2; cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2 K14590 CMTR2; cap2 methyltransferase [EC:2.1.1.296]
D Cap binding complex
E 192325 ncbp2; nuclear cap-binding protein subunit 2 K12883 NCBP2; nuclear cap-binding protein subunit 2
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
E 394092 nudt21; cleavage and polyadenylation specificity factor subunit 5 K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5
E 327069 cpsf6; cleavage and polyadenylation specificity factor subunit 6 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
D Pre-mRNA cleavage factor IIm (CFIIm)
E 565621 clp1; polyribonucleotide 5'-hydroxyl-kinase Clp1 K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
E 492341 pcf11; pre-mRNA cleavage complex 2 protein Pcf11 K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
D Cleavage and polyadenylation specificity factor (CPSF) complex
E 432372 cpsf1; cleavage and polyadenylation specificity factor subunit 1 K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E 436657 cpsf2; cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 324554 cpsf3; cleavage and polyadenylation specificity factor subunit 3 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 30203 cpsf4; cleavage and polyadenylation specificity factor subunit 4 K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 561900 fip1l1a; pre-mRNA 3'-end-processing factor FIP1 isoform X2 K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1
E 450021 fip1l1b; pre-mRNA 3'-end-processing factor FIP1 K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1
E 449009 wdr33; pre-mRNA 3' end processing protein WDR33 isoform 2 K15542 PFS2; polyadenylation factor subunit 2
E 321614 wdr82; WD repeat-containing protein 82 K14962 WDR82; COMPASS component SWD2
E 327301 ppp1cab; protein phosphatase 1, catalytic subunit, alpha isozyme b K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 407980 ppp1caa; protein phosphatase 1, catalytic subunit, alpha isozyme a K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 334597 ppp1cbl; protein phosphatase 1, catalytic subunit, beta isoform, like K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 100003223 ppp1cb; serine/threonine-protein phosphatase PP1-beta catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 571753 ppp1cc; serine/threonine-protein phosphatase PP1-gamma catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 393701 ssu72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
D Cleavage stimulation factor (CSTF) complex
E 324238 cstf1; cleavage stimulation factor subunit 1 K14406 CSTF1; cleavage stimulation factor subunit 1
E 386806 cstf2; cleavage stimulation factor subunit 2 K14407 CSTF2; cleavage stimulation factor subunit 2
E 406326 cstf3; cleavage stimulation factor subunit 3 K14408 CSTF3; cleavage stimulation factor subunit 3
E 570858 sympk; symplekin isoform X2 K06100 SYMPK; symplekin
D U7-dependent histone pre-mRNA processing factors
E 402966 snrpb; small nuclear ribonucleoprotein-associated proteins B and B' K11086 SNRPB; small nuclear ribonucleoprotein B and B'
E 415171 snrpd3; small nuclear ribonucleoprotein Sm D3 K11088 SNRPD3; small nuclear ribonucleoprotein D3
E 327011 snrpd3l; small nuclear ribonucleoprotein D3 polypeptide, like K11088 SNRPD3; small nuclear ribonucleoprotein D3
E 393979 snrpe; small nuclear ribonucleoprotein E K11097 SNRPE; small nuclear ribonucleoprotein E
E 445404 snrpf; small nuclear ribonucleoprotein F K11098 SNRPF; small nuclear ribonucleoprotein F
E 447922 snrpg; small nuclear ribonucleoprotein G isoform 2 K11099 SNRPG; small nuclear ribonucleoprotein G
E 100536270 lsm10; U7 snRNA-associated Sm-like protein LSm10 K25591 LSM10; U7 snRNA-associated Sm-like protein LSm10
E 101884591 U7 snRNA-associated Sm-like protein LSm10 K25591 LSM10; U7 snRNA-associated Sm-like protein LSm10
E 100004030 lsm11; U7 snRNA-associated Sm-like protein LSm11 K25592 LSM11; U7 snRNA-associated Sm-like protein LSm11
E 436657 cpsf2; cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 324554 cpsf3; cleavage and polyadenylation specificity factor subunit 3 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 386806 cstf2; cleavage stimulation factor subunit 2 K14407 CSTF2; cleavage stimulation factor subunit 2
E 570858 sympk; symplekin isoform X2 K06100 SYMPK; symplekin
E 407727 slbp; histone RNA hairpin-binding protein isoform 1 K18710 SLBP; histone RNA hairpin-binding protein
E 558918 slbp2; stem-loop binding protein 2 K18710 SLBP; histone RNA hairpin-binding protein
E 541521 casp8ap2; CASP8-associated protein 2 K25593 CASP8AP2; CASP8-associated protein 2
D DRB sensitivity inducing factor (DSIF) complex
E 436782 supt4h1; transcription elongation factor SPT4 K15171 SUPT4H1; transcription elongation factor SPT4
E 64275 supt5h; transcription elongation factor SPT5 K15172 SUPT5H; transcription elongation factor SPT5
D N6-methyltransferase complex
E 100004398 mettl3; N6-adenosine-methyltransferase subunit METTL3 K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]
E 404603 mettl14; N6-adenosine-methyltransferase non-catalytic subunit K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit
E 560686 mettl4; methyltransferase-like protein 4 isoform X3 K24174 METTL4; N(6)-adenine-specific DNA methyltransferase [EC:2.1.1.72]
E 445217 mettl16; RNA N6-adenosine-methyltransferase mettl16 K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346]
E 334058 wtap; pre-mRNA-splicing regulator WTAP K22824 WTAP; pre-mRNA-splicing regulator WTAP
E 560260 si:ch211-79l20.4; protein virilizer homolog isoform X1 K22910 VIRMA; protein virilizer
E 798517 rbm15; putative RNA-binding protein 15 K13190 RBM15; RNA-binding protein 15
E 560041 zc3h13; zinc finger CCCH domain-containing protein 13 K22909 ZC3H13; zinc finger CCCH domain-containing protein 13
E 394041 cbll1; E3 ubiquitin-protein ligase Hakai isoform 1 K15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27]
E 100002706 E3 ubiquitin-protein ligase Hakai-like K15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27]
D Poly(A) addition factors
E 393593 papolg; poly(A) polymerase gamma K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 404041 papola; poly(A) polymerase alpha K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 553626 tent2; poly(A) RNA polymerase GLD2 K14079 PAPD4; poly(A) RNA polymerase GLD2 [EC:2.7.7.19]
E 564388 tut1; speckle targeted PIP5K1A-regulated poly(A) polymerase K18709 TUT1; speckle targeted PIP5K1A-regulated poly(A) polymerase [EC:2.7.7.19 2.7.7.52]
D Negative regulators of mRNA 3' end processing
E 100147913 bard1; BRCA1-associated RING domain protein 1 K10683 BARD1; BRCA1-associated RING domain protein 1
E 619195 rbm26; RNA-binding protein 26 K13192 RBM26; RNA-binding protein 26
E 553363 fto; alpha-ketoglutarate-dependent dioxygenase FTO isoform X2 K19469 FTO; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 570158 alkbh5; RNA demethylase ALKBH5 K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 325052 tardbpb; TAR DNA-binding protein 43 K23600 TARDBP; TAR DNA-binding protein 43
E 386630 tardbpa; TAR DNA binding protein, like isoform 2 K23600 TARDBP; TAR DNA-binding protein 43
C Other processing factors
D 570225 dhx40; probable ATP-dependent RNA helicase DHX40 isoform X1 K18711 DHX40; ATP-dependent RNA helicase DHX40 [EC:5.6.2.6]
D 555316 kin; DNA/RNA-binding protein KIN17 K13102 KIN; DNA/RNA-binding protein KIN17
D 100148927 mettl8; mRNA N(3)-methylcytidine methyltransferase METTL8 K24975 METTL8; mRNA N(3)-methylcytidine methyltransferase METTL8 [EC:2.1.1.-]
D 796066 mettl22; methyltransferase-like protein 22 K23040 METTL22; methyltransferase-like protein 22 [EC:2.1.1.-]
D 777768 tent5ba; terminal nucleotidyltransferase 5ba K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 100330676 fam46aa; protein FAM46A K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 571146 tent5ab; terminal nucleotidyltransferase 5Ab K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 327154 tent5c; terminal nucleotidyltransferase 5C K23034 TENT5C; terminal nucleotidyltransferase 5C [EC:2.7.7.19]
D 562846 zc3h14; zinc finger CCCH domain-containing protein 14 K23038 ZC3H14; zinc finger CCCH domain-containing protein 14
D 192311 srrt; serrate RNA effector molecule homolog K27103 SRRT; serrate RNA effector molecule
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
E 503767 rbm8a; RNA-binding protein 8A K12876 RBM8A; RNA-binding protein 8A
E 100005893 magoh; protein mago nashi homolog K12877 MAGOH; protein mago nashi
E 560127 alyref; THO complex subunit 4 K12881 THOC4; THO complex subunit 4
E 393917 ddx39b; DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
E 394053 eif4a3; eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 541361 ccdc174; coiled-coil domain-containing protein 174 K25178 CCDC174; coiled-coil domain-containing protein 174
E 403025 casc3; protein CASC3 K14323 CASC3; protein CASC3
E 393693 sap18; histone deacetylase complex subunit SAP18 K14324 SAP18; histone deacetylase complex subunit SAP18
E 407733 pnn; pinin K13114 PNN; pinin
E 327495 acin1b; apoptotic chromatin condensation inducer 1b K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus
E 368893 acin1a; apoptotic chromatin condensation inducer in the nucleus isoform X1 K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus
E 327020 rnps1; RNA-binding protein with serine-rich domain 1 K14325 RNPS1; RNA-binding protein with serine-rich domain 1
E 103909923 RNA-binding protein with serine-rich domain 1 K14325 RNPS1; RNA-binding protein with serine-rich domain 1
E 406751 srrm1; serine/arginine repetitive matrix protein 1 isoform 1 K13171 SRRM1; serine/arginine repetitive matrix protein 1
D TREX complex
E 373077 thoc1; THO complex subunit 1 K12878 THOC1; THO complex subunit 1
E 368417 thoc2; THO complex subunit 2 K12879 THOC2; THO complex subunit 2
E 445302 thoc3; THO complex subunit 3 K12880 THOC3; THO complex subunit 3
E 560127 alyref; THO complex subunit 4 K12881 THOC4; THO complex subunit 4
E 325064 thoc5; THO complex subunit 5 homolog K13174 THOC5; THO complex subunit 5
E 100004014 thoc6; THO complex subunit 6 homolog K13175 THOC6; THO complex subunit 6
E 445035 thoc7; THO complex subunit 7 homolog K13176 THOC7; THO complex subunit 7
D TREX-2 complex
E 492509 pcid2; PCI domain-containing protein 2 K23801 PCID2; nuclear mRNA export protein PCID2/THP1
E 322269 sem1; 26S proteasome complex subunit SEM1 K10881 SHFM1; 26 proteasome complex subunit DSS1
E 436700 eny2; transcription and mRNA export factor ENY2 K11368 ENY2; enhancer of yellow 2 transcription factor
E 100006257 cetn2; centrin-1 K10840 CETN2; centrin-2
E 552931 cetn3; centrin-3 K16466 CETN3; centrin-3
E 436589 mcm3ap; germinal-center associated nuclear protein K24317 MCM3AP; germinal-center associated nuclear protein [EC:2.3.1.48]
D Nuclear pore complex
E 558883 tprb; translocated promoter region b, nuclear basket protein K09291 TPR; nucleoprotein TPR
E 571089 tpra; nucleoprotein TPR isoform X1 K09291 TPR; nucleoprotein TPR
E 393973 rae1; mRNA export factor K14298 RAE1; mRNA export factor
E 798071 sec13; protein SEC13 homolog K14004 SEC13; protein transport protein SEC13
E 436892 nup37; nucleoporin Nup37 K14302 NUP37; nuclear pore complex protein Nup37
E 445231 nup85; nuclear pore complex protein Nup85 K14304 NUP85; nuclear pore complex protein Nup85
E 405828 nup43; nucleoporin Nup43 K14305 NUP43; nuclear pore complex protein Nup43
E 322969 nup50; nuclear pore complex protein Nup50 K14295 NUP50; nuclear pore complex protein Nup50
E 335750 nup54; nucleoporin p54 K14308 NUP54; nuclear pore complex protein Nup54
E 563392 nup62l; nucleoporin 62 like K14306 NUP62; nuclear pore complex protein Nup62
E 321744 nup88; nucleoporin 88 K14318 NUP88; nuclear pore complex protein Nup88
E 30172 nup93; nuclear pore complex protein Nup93 K14309 NUP93; nuclear pore complex protein Nup93
E 777756 nup98; nuclear pore complex protein Nup98-Nup96 K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E 562350 nup107; nuclear pore complex protein Nup107 K14301 NUP107; nuclear pore complex protein Nup107
E 406852 nup133; nuclear pore complex protein Nup133 K14300 NUP133; nuclear pore complex protein Nup133
E 559225 nup188; nucleoporin NUP188 homolog K14311 NUP188; nuclear pore complex protein Nup188
E 571621 nup153; nuclear pore complex protein Nup153 K14296 NUP153; nuclear pore complex protein Nup153
E 393125 nup155; nuclear pore complex protein Nup155 K14312 NUP155; nuclear pore complex protein Nup155
E 393635 nup160; nuclear pore complex protein Nup160 K14303 NUP160; nuclear pore complex protein Nup160
E 337461 nup35; nucleoporin NUP35 K14313 NUP35; nuclear pore complex protein Nup53
E 445382 nup205; nuclear pore complex protein Nup205 K14310 NUP205; nuclear pore complex protein Nup205
E 570945 nup210; nuclear pore membrane glycoprotein 210 K14314 NUP210; nuclear pore complex protein Nup210
E 100529857 nup214; nuclear pore complex protein Nup214 K14317 NUP214; nuclear pore complex protein Nup214
E 568298 pom121; nuclear envelope pore membrane protein POM 121 K14316 POM121; nuclear pore complex protein Nup121
E 406510 nup58; nucleoporin p58/p45 K14307 NUPL1; nucleoporin p58/p45
E 406491 nup42; nucleoporin NUP42 K14321 NUPL2; nucleoporin-like protein 2
E 335236 ndc1; nucleoporin NDC1 K14315 NDC1; nucleoporin NDC1
E 334749 seh1l; nucleoporin SEH1 K14299 SEH1; nucleoporin SEH1
E 100317326 si:ch1073-55a19.2; E3 SUMO-protein ligase RanBP2 isoform X3 K12172 RANBP2; E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-]
E 556400 senp2; sentrin-specific protease 2 K03345 SENP2; sentrin-specific protease 2 (axin associating molecule) [EC:3.4.22.68]
E 378454 aaas; aladin K14320 AAAS; aladin
E 552931 cetn3; centrin-3 K16466 CETN3; centrin-3
E 445408 gle1; mRNA export factor GLE1 K18723 GLE1; nucleoporin GLE1
E 323865 nxf1; nuclear RNA export factor 1 K14284 NXF; nuclear RNA export factor
E 751719 nxf1a; uncharacterized protein LOC751719 K14284 NXF; nuclear RNA export factor
E 751738 nxt2; NTF2-related export protein 2 K14285 NXT1_2; NTF2-related export protein 1/2
D Ran-mediated transport factors
E 30572 ran; GTP-binding nuclear protein Ran K07936 RAN; GTP-binding nuclear protein Ran
E 335907 anp32a; acidic leucine-rich nuclear phosphoprotein 32 family member A K18646 ANP32A_C_D; acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D
E 322000 anp32b; acidic leucine-rich nuclear phosphoprotein 32 family member B K18647 ANP32B; acidic leucine-rich nuclear phosphoprotein 32 family member B
E 100149404 tnfsf13; tumor necrosis factor ligand superfamily member 13 K05475 TNFSF13; tumor necrosis factor ligand superfamily member 13
E 30736 elavl1a; ELAV-like protein 1a K13088 ELAVL1; ELAV-like protein 1
E 30065 elavl1b; ELAV-like protein 1b isoform b K13088 ELAVL1; ELAV-like protein 1
E 431719 elavl2; ELAV-like protein 2 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 30732 elavl3; ELAV-like protein 3 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 30737 elavl4; ELAV-like protein 4 isoform 1 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 497596 faf2; FAS-associated factor 2 K18726 FAF2; FAS-associated factor 2
E 327197 vcp; transitional endoplasmic reticulum ATPase K13525 VCP; transitional endoplasmic reticulum ATPase
E 563679 zgc:136908; Transitional endoplasmic reticulum ATPase K13525 VCP; transitional endoplasmic reticulum ATPase
E 751625 vcpkmt; protein-lysine methyltransferase METTL21D K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]
E 445499 tnpo2a; transportin-2 K18727 TNPO2; transportin-2
E 100005536 transportin-2 K18727 TNPO2; transportin-2
E 561138 xpo1b; exportin-1 K14290 XPO1; exportin-1
E 558395 xpo1a; exportin-1 K14290 XPO1; exportin-1
E 407710 xpo7; exportin-7 K18460 XPO7; exportin-7
E 767677 rangap1a; ran GTPase-activating protein 1a K14319 RANGAP1; Ran GTPase-activating protein 1
E 568424 rangap1b; ran GTPase-activating protein 1b K14319 RANGAP1; Ran GTPase-activating protein 1
D eIF4F and regulatory proteins
E 79380 eif4ea; eukaryotic translation initiation factor 4E-1A K03259 EIF4E; translation initiation factor 4E
E 393732 eif4e2rs1; eukaryotic translation initiation factor 4E family member 2 related sequence 1 K03259 EIF4E; translation initiation factor 4E
E 541523 eif4e2; eukaryotic translation initiation factor 4E type 2 K03259 EIF4E; translation initiation factor 4E
E 550549 eif4e1c; eukaryotic translation initiation factor 4E family member 1c K03259 EIF4E; translation initiation factor 4E
E 493617 eif4eb; eukaryotic translation initiation factor 4eb K03259 EIF4E; translation initiation factor 4E
E 30738 eif4e1b; eukaryotic translation initiation factor 4E-1B K03259 EIF4E; translation initiation factor 4E
E 399484 eif4a1b; eukaryotic translation initiation factor 4A1B K03257 EIF4A; translation initiation factor 4A
E 386634 eif4a1a; eukaryotic translation initiation factor 4A1A K03257 EIF4A; translation initiation factor 4A
E 406760 eif4a2; eukaryotic initiation factor 4A-II K03257 EIF4A; translation initiation factor 4A
E 334618 eif4g2b; eukaryotic translation initiation factor 4 gamma 2b K03260 EIF4G; translation initiation factor 4G
E 568761 eif4g3b; eukaryotic translation initiation factor 4 gamma 3 isoform X5 K03260 EIF4G; translation initiation factor 4G
E 572435 eif4g1a; eukaryotic translation initiation factor 4 gamma 1a K03260 EIF4G; translation initiation factor 4G
E 566131 eif4g3a; eukaryotic translation initiation factor 4 gamma 3 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 323453 eif4g2a; eukaryotic translation initiation factor 4 gamma 2a K03260 EIF4G; translation initiation factor 4G
E 336619 eif4bb; eukaryotic translation initiation factor 4Bb K03258 EIF4B; translation initiation factor 4B
E 553214 eif4ba; eukaryotic translation initiation factor 4Ba K03258 EIF4B; translation initiation factor 4B
E 402996 eif4h; eukaryotic translation initiation factor 4H isoform 1 K24086 EIF4H; translation initiation factor 4H
E 799566 eif4ebp1; eukaryotic translation initiation factor 4E-binding protein 1 K07205 EIF4EBP1; eukaryotic translation initiation factor 4E binding protein 1
E 386945 eif4ebp2; eukaryotic translation initiation factor 4E-binding protein 2 K18644 EIF4EBP2; eukaryotic translation initiation factor 4E binding protein 2
E 324490 eif4ebp3l; eukaryotic translation initiation factor 4E-binding protein 3-like K18645 EIF4EBP3; eukaryotic translation initiation factor 4E binding protein 3
E 492482 eif4ebp3; eukaryotic translation initiation factor 4E-binding protein 3 K18645 EIF4EBP3; eukaryotic translation initiation factor 4E binding protein 3
E 541411 eif4enif1; eukaryotic translation initiation factor 4E transporter K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 569547 angel1; protein angel homolog 1 isoform X2 K18729 ANGEL; protein angel
E 562704 angel2; protein angel homolog 2 K18729 ANGEL; protein angel
E 259191 fmr1; synaptic functional regulator FMR1 K15516 FMR; fragile X mental retardation protein
E 327220 fxr1; RNA-binding protein FXR1 isoform 2 K15516 FMR; fragile X mental retardation protein
E 393180 fxr2; fragile X mental retardation syndrome-related protein 2 K15516 FMR; fragile X mental retardation protein
E 336613 cyfip1; cytoplasmic FMR1-interacting protein 1 homolog K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 100002872 cyfip2; cytoplasmic FMR1-interacting protein 2 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 799538 gemin5; gem-associated protein 5 isoform X1 K13133 GEMIN5; gem associated protein 5
E 321283 tacc3; transforming acidic coiled-coil-containing protein 3 K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 30702 cpeb1b; cytoplasmic polyadenylation element-binding protein 1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 79079 cpeb1a; cytoplasmic polyadenylation element-binding protein 1a K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 100005268 cpeb3; cytoplasmic polyadenylation element-binding protein 3 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 100330483 cpeb2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 100333151 cpeb4b; cytoplasmic polyadenylation element-binding protein 4b K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 393956 cpeb4a; cytoplasmic polyadenylation element-binding protein 4 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 566947 ddx3xa; DEAD-box helicase 3 X-linked a K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 30116 ddx3xb; DEAD-box helicase 3 X-linked b K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 100002679 gigyf1; GRB10-interacting GYF protein 1 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 561830 gigyf2; GRB10-interacting GYF protein 2 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 568584 GRB10-interacting GYF protein 1 isoform X2 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 393856 pabpc1b; polyadenylate-binding protein 1b K13126 PABPC; polyadenylate-binding protein
E 327625 pabpc1l; polyadenylate-binding protein 1-like K13126 PABPC; polyadenylate-binding protein
E 606498 pabpc1a; polyadenylate-binding protein 1A K13126 PABPC; polyadenylate-binding protein
E 321035 pabpc4; polyadenylate-binding protein 4 K13126 PABPC; polyadenylate-binding protein
E 445110 paip1; polyadenylate-binding protein-interacting protein 1 K14322 PAIP1; polyadenylate-binding protein-interacting protein 1
E 393739 paip2b; polyadenylate-binding protein-interacting protein 2B K27470 PAIP2; polyadenylate-binding protein-interacting protein 2
E 559653 skic2; helicase SKI2W K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 563776 deaf1; deformed epidermal autoregulatory factor 1 homolog K23041 DEAF1; deformed epidermal autoregulatory factor 1
E 394046 mcts1; malignant T-cell-amplified sequence 1 K07575 MCTS; malignant T-cell-amplified sequence
E 436970 denr; density-regulated protein K24272 DENR; density-regulated protein
D APOBEC1-ACF complex
E 562916 a1cf; APOBEC1 complementation factor K24978 A1CF; APOBEC1 complementation factor
D Other transport factors
E 393566 pym1; partner of Y14 and mago K14294 WIBG; partner of Y14 and mago
E 393467 hnrnpa1a; heterogeneous nuclear ribonucleoprotein A1a K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 378453 hnrnpa1b; heterogeneous nuclear ribonucleoprotein A1b K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 751729 hnrnpa3; heterogeneous nuclear ribonucleoprotein A3 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 541389 msi1b; RNA-binding protein Musashi homolog 1b K14411 MSI; RNA-binding protein Musashi
E 394084 msi2b; RNA-binding protein Musashi homolog 2b K14411 MSI; RNA-binding protein Musashi
E 100002680 msi2a; RNA-binding protein Musashi homolog 2a K14411 MSI; RNA-binding protein Musashi
E 561459 dazap1; DAZ-associated protein 1 K14411 MSI; RNA-binding protein Musashi
E 503755 msi1a; uncharacterized protein LOC503755 K14411 MSI; RNA-binding protein Musashi
E 100537556 RNA-binding protein Musashi homolog 1-like K14411 MSI; RNA-binding protein Musashi
E 324267 hbs1l; HBS1-like protein K14416 HBS1; elongation factor 1 alpha-like protein
E 394111 pelo; protein pelota homolog K06965 PELO; protein pelota
E 406543 pabpn1; polyadenylate-binding protein 2 isoform 2 K14396 PABPN1; polyadenylate-binding protein 2
E 796580 pabpn1l; embryonic polyadenylate-binding protein 2 K14396 PABPN1; polyadenylate-binding protein 2
E 192339 ddx19b; ATP-dependent RNA helicase DDX19B K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 563448 ddx19a; ATP-dependent RNA helicase DDX19A K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 387600 xab2; pre-mRNA-splicing factor SYF1 K12867 SYF1; pre-mRNA-splicing factor SYF1
E 554106 sarnp; SAP domain-containing ribonucleoprotein K18732 SARNP; SAP domain-containing ribonucleoprotein
E 406457 rcc1; regulator of chromosome condensation K11493 RCC1; regulator of chromosome condensation
E 334471 larp6a; la-related protein 6a K18733 LARP6; la-related protein 6
E 565767 larp6b; la-related protein 6b K18733 LARP6; la-related protein 6
E 415106 puraa; purine-rich element binding protein Aa K21772 PURA; transcriptional activator protein Pur-alpha
E 557266 purab; transcriptional activator protein Pur-alpha K21772 PURA; transcriptional activator protein Pur-alpha
E 564840 purine-rich element binding protein B K21799 PURB; transcriptional activator protein Pur-beta
E 565233 purba; purine-rich element binding protein Ba K21799 PURB; transcriptional activator protein Pur-beta
E 393519 purbb; transcriptional activator protein Pur-beta K21799 PURB; transcriptional activator protein Pur-beta
E 100536140 poldip3; polymerase delta-interacting protein 3 isoform X1 K22414 POLDIP3; polymerase delta-interacting protein 3
E 324551 zc3h11a; zinc finger CCCH domain-containing protein 11A K22415 ZC3H11; zinc finger CCCH domain-containing protein 11
E 100037367 leng8; leukocyte receptor cluster member 8 homolog K23802 LENG8; SAC3 family protein LENG8/THP3
E 556271 si:ch211-103b1.2; protein PAT1 homolog 2 K24823 PATL2; protein PAT1 homolog 2
C Surveillance factors
D Surveillance complex
E 266989 etf1b; eukaryotic peptide chain release factor subunit 1b K03265 ETF1; peptide chain release factor subunit 1
E 563172 etf1a; Eukaryotic peptide chain release factor subunit 1-like K03265 ETF1; peptide chain release factor subunit 1
E 325284 gspt1l; G1 to S phase transition 1, like K03267 ERF3; peptide chain release factor subunit 3
E 445485 gspt1; eukaryotic peptide chain release factor GTP-binding subunit ERF3A K03267 ERF3; peptide chain release factor subunit 3
E 406783 upf1; regulator of nonsense transcripts 1 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 569006 upf2; LOW QUALITY PROTEIN: regulator of nonsense transcripts 2 K14327 UPF2; regulator of nonsense transcripts 2
E 393929 upf3b; regulator of nonsense transcripts 3B K14328 UPF3; regulator of nonsense transcripts 3
E 566608 upf3a; regulator of nonsense transcripts 3A K14328 UPF3; regulator of nonsense transcripts 3
D Protein phosphatase 2A
E 393885 ppp2cab; serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 406582 ppp2cb; serine/threonine-protein phosphatase 2A catalytic subunit beta isoform K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 550585 ppp2caa; protein phosphatase 2 catalytic subunit alpha a K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 406685 ppp2r1ba; protein phosphatase 2, regulatory subunit A, beta a K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 449548 ppp2r1bb; serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 327263 ppp2r2ab; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 405816 ppp2r2d; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 558810 ppp2r2bb; protein phosphatase 2, regulatory subunit B, beta b K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 558752 ppp2r2aa; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 100002802 ppp2r2ca; protein phosphatase 2, regulatory subunit B, gamma a K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 559392 ppp2r2cb; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 100001644 ppp2r2ba; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 566032 ppp2r3b; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta isoform X2 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 393100 ppp2r3c; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 565849 ppp2r3a; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha isoform X2 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 562460 ppp2r5a; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 562282 ppp2r5b; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit beta isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 557208 ppp2r5cb; protein phosphatase 2, regulatory subunit B', gamma b isoform 1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 406610 ppp2r5d; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 373878 ppp2r5eb; protein phosphatase 2, regulatory subunit B', epsilon isoform b K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 373881 ppp2r5ea; protein phosphatase 2, regulatory subunit B', epsilon isoform a K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 100005981 ppp2r5ca; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
D Other surveillance factors
E 569810 smg1; serine/threonine-protein kinase SMG1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 553261 smg5; nonsense-mediated mRNA decay factor SMG5 K11125 SMG5; protein SMG5
E 100334020 smg6; telomerase-binding protein EST1A precursor K11124 SMG6; protein SMG6 [EC:3.1.-.-]
E 565575 smg7; nonsense-mediated mRNA decay factor SMG7 K14409 SMG7; protein SMG7
E 567424 smg8; protein SMG8 K18734 SMG8; protein SMG8
E 562557 smg9; protein SMG9 K18735 SMG9; protein SMG9
E 100002679 gigyf1; GRB10-interacting GYF protein 1 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 561830 gigyf2; GRB10-interacting GYF protein 2 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 568584 GRB10-interacting GYF protein 1 isoform X2 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 562833 secisbp2l; selenocysteine insertion sequence-binding protein 2-like K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2
E 555838 dhx34; probable ATP-dependent RNA helicase DHX34 K20101 DHX34; ATP-dependent RNA helicase DHX34 [EC:5.6.2.6]
E 378721 gtpbp1; GTP-binding protein 1 K24887 GTPBP1; GTP-binding protein 1
E 402863 gtpbp1l; GTP binding protein 1, like K24887 GTPBP1; GTP-binding protein 1
C Factors involved in mRNA localization
D Cargo complex
E 553068 pum3; pumilio homolog 3 K14844 PUF6; pumilio homology domain family member 6
E 562676 myo5c; unconventional myosin-Vc K10357 MYO5; myosin V
E 567402 myo5b; unconventional myosin-Vb K10357 MYO5; myosin V
E 565267 myo5ab; unconventional myosin-Va K10357 MYO5; myosin V
E 562188 myo5aa; unconventional myosin-Va isoform X6 K10357 MYO5; myosin V
E 568760 si:dkey-110c1.10; unconventional myosin-Vb isoform X1 K10357 MYO5; myosin V
E 100330881 zgc:171572; protein bicaudal D homolog 2 K18739 BICD; protein bicaudal D
E 556758 bicd1a; protein bicaudal D homolog 1 isoform X3 K18739 BICD; protein bicaudal D
E 557383 bicd2; protein bicaudal D homolog 2 isoform X1 K18739 BICD; protein bicaudal D
E 558638 zgc:162200; uncharacterized protein LOC558638 K18739 BICD; protein bicaudal D
E 751755 exd1; piRNA biogenesis protein EXD1 K18740 EXD1; exonuclease 3'-5' domain-containing protein 1
D Factors that have mRNA localization signals
E 57934 actb1; actin, cytoplasmic 1 K05692 ACTB_G1; actin beta/gamma 1
E 57935 actb2; actin, cytoplasmic 2 K05692 ACTB_G1; actin beta/gamma 1
E 326281 mbpa; myelin basic protein isoform X1 K17269 MBP; myelin basic protein
E 368319 mbpb; myelin basic protein b isoform 2 K17269 MBP; myelin basic protein
E 140599 vim; vimentin K07606 VIM; vimentin
E 108179220 vimentin-like K07606 VIM; vimentin
E 393746 viml; vimentin like K07606 VIM; vimentin
E 100174951 mt2; metallothionein-2 K14739 MT1_2; metallothionein 1/2
E 569445 mtbl; metallothionein-B-like K14739 MT1_2; metallothionein 1/2
E 30282 mt; metallothionein-1 K14739 MT1_2; metallothionein 1/2
E 393141 mycb; transcriptional regulator Myc-B K04377 MYC; Myc proto-oncogene protein
E 30686 myca; transcriptional regulator Myc-A K04377 MYC; Myc proto-oncogene protein
E 192294 tbx6; T-box transcription factor TBX6 K10180 TBX6; T-box protein 6
E 30264 tbx16; T-box transcription factor 16 K10180 TBX6; T-box protein 6
E 322903 nanos1; nanos homolog 1 K18741 NANOS1; protein nanos 1
E 101885179 nanos homolog 1 K18741 NANOS1; protein nanos 1
D Trans-acting binding proteins
E 573145 khsrp; far upstream element-binding protein 2 K13210 FUBP; far upstream element-binding protein
E 406418 fubp1; far upstream element-binding protein 1 K13210 FUBP; far upstream element-binding protein
E 493616 fubp3; far upstream element-binding protein 3 K13210 FUBP; far upstream element-binding protein
E 336334 eef1a1a; elongation factor 1-alpha 1a K03231 EEF1A; elongation factor 1-alpha
E 30516 eef1a1l1; elongation factor 1-alpha K03231 EEF1A; elongation factor 1-alpha
E 436644 eef1a2; elongation factor 1-alpha 2 K03231 EEF1A; elongation factor 1-alpha
E 100004503 eef1a1b; elongation factor 1-alpha 1b K03231 EEF1A; elongation factor 1-alpha
E 664756 eef1a1l2; eukaryotic translation elongation factor 1 alpha 1, like 2 K03231 EEF1A; elongation factor 1-alpha
E 407641 eef1a1l3; Elongation factor 1-alpha-like K03231 EEF1A; elongation factor 1-alpha
E 195822 eef1g; elongation factor 1-gamma K03233 EEF1G; elongation factor 1-gamma
E 100037382 zgc:163074; uncharacterized protein LOC100037382 K03233 EEF1G; elongation factor 1-gamma
E 436609 hax1; HCLS1-associated protein X-1 K16220 HAX1; HCLS1-associated protein X-1
E 327597 agfg1a; arf-GAP domain and FG repeat-containing protein 1a K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
E 393560 agfg1b; arf-GAP domain and FG repeat-containing protein 1b K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
E 334440 stau1; double-stranded RNA-binding protein Staufen homolog 1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 393899 stau2; double-stranded RNA-binding protein Staufen homolog 2 K17597 STAU; double-stranded RNA-binding protein Staufen
E 30967 igf2bp3; insulin-like growth factor 2 mRNA-binding protein 3 K13197 IGF2BP3; insulin-like growth factor 2 mRNA-binding protein 3
E 323490 ptbp1a; polypyrimidine tract-binding protein 1a K13218 PTBP1; polypyrimidine tract-binding protein 1
E 321220 ptbp1b; polypyrimidine tract-binding protein 1b K13218 PTBP1; polypyrimidine tract-binding protein 1
E 30702 cpeb1b; cytoplasmic polyadenylation element-binding protein 1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 79079 cpeb1a; cytoplasmic polyadenylation element-binding protein 1a K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 100005268 cpeb3; cytoplasmic polyadenylation element-binding protein 3 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 100330483 cpeb2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 100333151 cpeb4b; cytoplasmic polyadenylation element-binding protein 4b K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 393956 cpeb4a; cytoplasmic polyadenylation element-binding protein 4 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
D Other mRNA localization factors
E 259191 fmr1; synaptic functional regulator FMR1 K15516 FMR; fragile X mental retardation protein
E 327220 fxr1; RNA-binding protein FXR1 isoform 2 K15516 FMR; fragile X mental retardation protein
E 393180 fxr2; fragile X mental retardation syndrome-related protein 2 K15516 FMR; fragile X mental retardation protein
E 336613 cyfip1; cytoplasmic FMR1-interacting protein 1 homolog K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 100002872 cyfip2; cytoplasmic FMR1-interacting protein 2 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 321844 pcbp2; poly(rC)-binding protein 2 K13162 PCBP2; poly(rC)-binding protein 2
E 664755 zgc:110045; uncharacterized protein LOC664755 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 553765 pcbp3; poly(rC)-binding protein 3 isoform 2 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 100038772 zgc:162999; uncharacterized protein LOC100038772 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 406391 pcbp4; poly(rC)-binding protein 4 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 406341 caprin1b; caprin-1b K18743 CAPRIN1; caprin-1
E 445090 caprin1a; caprin-1a K18743 CAPRIN1; caprin-1
E 407729 caprin2; caprin-2 K18744 CAPRIN2; caprin-2
E 795398 ybx1; Y-box-binding protein 1 isoform 2 K09276 YBX1; Y-box-binding protein 1
C mRNA cycle factors
D Common to processing body (P body) and stress granule
E 394008 xrn1; 5'-3' exoribonuclease 1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E 567622 ago3a; protein argonaute-3 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 570775 ago1; protein argonaute-1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 568159 ago3b; protein argonaute-3 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 570630 ago2; protein argonaute-2 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 100535764 ago4; protein argonaute-4 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 79380 eif4ea; eukaryotic translation initiation factor 4E-1A K03259 EIF4E; translation initiation factor 4E
E 393732 eif4e2rs1; eukaryotic translation initiation factor 4E family member 2 related sequence 1 K03259 EIF4E; translation initiation factor 4E
E 541523 eif4e2; eukaryotic translation initiation factor 4E type 2 K03259 EIF4E; translation initiation factor 4E
E 550549 eif4e1c; eukaryotic translation initiation factor 4E family member 1c K03259 EIF4E; translation initiation factor 4E
E 493617 eif4eb; eukaryotic translation initiation factor 4eb K03259 EIF4E; translation initiation factor 4E
E 30738 eif4e1b; eukaryotic translation initiation factor 4E-1B K03259 EIF4E; translation initiation factor 4E
E 406783 upf1; regulator of nonsense transcripts 1 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 566947 ddx3xa; DEAD-box helicase 3 X-linked a K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 30116 ddx3xb; DEAD-box helicase 3 X-linked b K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 100007313 ddx61; probable ATP-dependent RNA helicase ddx6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 564633 ddx6; probable ATP-dependent RNA helicase DDX6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 100332760 mex3a; RNA-binding protein MEX3A K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 569582 mex3b; RNA-binding protein MEX3B K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 100534722 RNA-binding protein MEX3B-like K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 564534 fastk; fas-activated serine/threonine kinase K08290 FASTK; Fas-activated serine/threonine kinase [EC:2.7.11.8]
E 393140 lsm14b; protein LSM14 homolog B K18749 LSM14; protein LSM14
E 393397 lsm14aa; LSM14A mRNA processing body assembly factor a K18749 LSM14; protein LSM14
E 406800 lsm14ab; LSM14A mRNA processing body assembly factor b K18749 LSM14; protein LSM14
E 321844 pcbp2; poly(rC)-binding protein 2 K13162 PCBP2; poly(rC)-binding protein 2
E 795398 ybx1; Y-box-binding protein 1 isoform 2 K09276 YBX1; Y-box-binding protein 1
E 562793 limd1a; LIM domain-containing protein 1 K16682 AJUBA; LIM domain-containing protein
E 572549 ajuba; LIM domain-containing protein ajuba K16682 AJUBA; LIM domain-containing protein
E 566046 wtip; Wilms tumor protein 1-interacting protein homolog K16682 AJUBA; LIM domain-containing protein
E 110439375 LIM domain-containing protein 1-like K16682 AJUBA; LIM domain-containing protein
E 555950 mov10b.2; putative helicase mov-10-B.2 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 556024 mov10b.1; putative helicase mov-10-B.1 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 566858 mov10a; putative helicase mov-10-B.1 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 565522 pnrc2; proline-rich nuclear receptor coactivator 2 K18751 PNRC2; proline-rich nuclear receptor coactivator 2
E 562607 tnpo1; transportin-1 K18752 TNPO1; transportin-1
E 569810 smg1; serine/threonine-protein kinase SMG1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 553261 smg5; nonsense-mediated mRNA decay factor SMG5 K11125 SMG5; protein SMG5
E 100334020 smg6; telomerase-binding protein EST1A precursor K11124 SMG6; protein SMG6 [EC:3.1.-.-]
E 565575 smg7; nonsense-mediated mRNA decay factor SMG7 K14409 SMG7; protein SMG7
E 100334443 sb:cb81; mRNA decay activator protein ZFP36L1-like K18753 ZFP36L; butyrate response factor
E 323671 zfp36l1b; mRNA decay activator protein ZFP36L1b K18753 ZFP36L; butyrate response factor
E 333941 zfp36l2; mRNA decay activator protein ZFP36L2 K18753 ZFP36L; butyrate response factor
E 561280 zfp36l1a; mRNA decay activator protein ZFP36L1a K18753 ZFP36L; butyrate response factor
E 570332 zgc:114130; uncharacterized protein LOC570332 K18753 ZFP36L; butyrate response factor
E 103752590 lin28b; protein lin-28 homolog B K18754 LIN28; protein lin-28
E 394066 lin28ab; protein lin-28 homolog A K18754 LIN28; protein lin-28
E 799825 si:ch1073-284b18.2; protein lin-28 homolog A-like isoform X2 K18754 LIN28; protein lin-28
E 30214 htt; huntingtin K04533 HD; huntingtin
E 555520 ipo8; importin-8 K18755 IPO8; importin-8
E 402785 bicc2; bicaudal C homolog 2 K18756 BICC1; protein bicaudal C
E 568201 bicc1a; protein bicaudal C homolog 1 isoform X2 K18756 BICC1; protein bicaudal C
E 571411 bicc1b; protein bicaudal C homolog 1 K18756 BICC1; protein bicaudal C
E 393467 hnrnpa1a; heterogeneous nuclear ribonucleoprotein A1a K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 378453 hnrnpa1b; heterogeneous nuclear ribonucleoprotein A1b K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 751729 hnrnpa3; heterogeneous nuclear ribonucleoprotein A3 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 393998 prkacba; protein kinase, cAMP-dependent, catalytic, beta a K04345 PKA; protein kinase A [EC:2.7.11.11]
E 445076 prkacab; cAMP-dependent protein kinase catalytic subunit alpha K04345 PKA; protein kinase A [EC:2.7.11.11]
E 563147 prkacbb; protein kinase, cAMP-dependent, catalytic, beta b K04345 PKA; protein kinase A [EC:2.7.11.11]
E 564064 prkacaa; protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a K04345 PKA; protein kinase A [EC:2.7.11.11]
E 327175 larp1; la-related protein 1 isoform X2 K18757 LARP1; la-related protein 1
E 568156 larp1b; la-related protein 1B isoform X1 K18757 LARP1; la-related protein 1
E 324525 atxn2l; ataxin-2-like protein K23625 ATXN2_2L; ataxin 2/2L
E 569210 atxn2; ataxin-2 K23625 ATXN2_2L; ataxin 2/2L
D P-body specific factors
E 393121 dcp2; m7GpppN-mRNA hydrolase K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 360153 dcp1a; mRNA-decapping enzyme 1A K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-]
E 568176 dcp1b; mRNA-decapping enzyme 1B K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 445157 lsm1; U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 57924 smx5; smx5 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 100535720 lsm3; snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 393669 lsm4; U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 563948 lsm5; U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 415167 lsm6; U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 573047 lsm7; U6 snRNA-associated Sm-like protein LSm7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 566017 lsm8; LSM8 homolog, U6 small nuclear RNA associated K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
E 335499 klc1b; kinesin light chain 1b K10407 KLC; kinesin light chain
E 393928 klc1a; kinesin light chain 1 K10407 KLC; kinesin light chain
E 562365 klc2; kinesin light chain 2 K10407 KLC; kinesin light chain
E 569394 klc3; kinesin light chain 3 K10407 KLC; kinesin light chain
E 562676 myo5c; unconventional myosin-Vc K10357 MYO5; myosin V
E 567402 myo5b; unconventional myosin-Vb K10357 MYO5; myosin V
E 565267 myo5ab; unconventional myosin-Va K10357 MYO5; myosin V
E 562188 myo5aa; unconventional myosin-Va isoform X6 K10357 MYO5; myosin V
E 568760 si:dkey-110c1.10; unconventional myosin-Vb isoform X1 K10357 MYO5; myosin V
E 373080 tuba1b; tubulin alpha-1B chain K07374 TUBA; tubulin alpha
E 393664 tuba8l2; tubulin, alpha 8 like 2 K07374 TUBA; tubulin alpha
E 327377 tuba4l; tubulin, alpha 4 like K07374 TUBA; tubulin alpha
E 337223 tuba5; tubulin alpha 5 K07374 TUBA; tubulin alpha
E 393154 tuba8l4; tubulin, alpha 8 like 4 K07374 TUBA; tubulin alpha
E 406303 tuba2; tubulin, alpha 2 K07374 TUBA; tubulin alpha
E 431777 tuba7l; tubulin, alpha 7 like K07374 TUBA; tubulin alpha
E 445164 tuba8l3; tubulin, alpha 8 like 3 K07374 TUBA; tubulin alpha
E 573122 tuba1c; tubulin alpha-1C chain K07374 TUBA; tubulin alpha
E 573216 tuba1a; tubulin alpha-1A chain K07374 TUBA; tubulin alpha
E 641561 zgc:123298; uncharacterized protein LOC641561 K07374 TUBA; tubulin alpha
E 792024 tuba8l5; tubulin, alpha 8 like 5 K07374 TUBA; tubulin alpha
E 795591 si:ch211-114n24.6; uncharacterized protein LOC795591 K07374 TUBA; tubulin alpha
E 30702 cpeb1b; cytoplasmic polyadenylation element-binding protein 1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 79079 cpeb1a; cytoplasmic polyadenylation element-binding protein 1a K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 100005268 cpeb3; cytoplasmic polyadenylation element-binding protein 3 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 100330483 cpeb2; cytoplasmic polyadenylation element-binding protein 2 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 100333151 cpeb4b; cytoplasmic polyadenylation element-binding protein 4b K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 393956 cpeb4a; cytoplasmic polyadenylation element-binding protein 4 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 799538 gemin5; gem-associated protein 5 isoform X1 K13133 GEMIN5; gem associated protein 5
E 321283 tacc3; transforming acidic coiled-coil-containing protein 3 K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 560874 tnrc6c1; trinucleotide repeat-containing gene 6C protein isoform X2 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 321362 tnrc6b; trinucleotide repeat-containing gene 6B protein isoform X2 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 100149391 tnrc6c2; trinucleotide repeat-containing gene 6C protein isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 101882473 si:dkey-217f16.6; trinucleotide repeat-containing gene 6B protein-like isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 793145 si:dkey-46g23.1; trinucleotide repeat-containing gene 6B protein-like isoform X2 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 448949 cnot1; CCR4-NOT transcription complex subunit 1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 100037372 cnot2; CCR4-NOT transcription complex subunit 2 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 327627 cnot3b; CCR4-NOT transcription complex subunit 3b K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 449540 cnot3a; CCR4-NOT transcription complex subunit 3a K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 569055 cnot4a; CCR4-NOT transcription complex subunit 4 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 394144 cnot4b; uncharacterized protein LOC394144 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 553665 cnot6l; CCR4-NOT transcription complex subunit 6-like K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 560386 cnot6b; CCR4-NOT transcription complex, subunit 6b K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 324048 cnot6a; CCR4-NOT transcription complex subunit 6a K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 768119 cnot7; CCR4-NOT transcription complex subunit 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 406788 cnot8; CCR4-NOT transcription complex subunit 8 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 100535053 si:ch211-79l17.1 K26671 GARRE1; granule associated Rac and RHOG effector protein 1
E 566106 dis3l2; DIS3-like exonuclease 2 K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-]
E 792831 pan2; PAB-dependent poly(A)-specific ribonuclease subunit PAN2 isoform X2 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E 100126012 pan3; PAN2-PAN3 deadenylation complex subunit PAN3 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
E 492503 si:dkey-42i9.4; uncharacterized protein LOC492503 K14443 TOB; protein Tob/BTG
E 100007655 protein Tob2 K14443 TOB; protein Tob/BTG
E 114432 btg1; protein BTG1 K14443 TOB; protein Tob/BTG
E 30079 btg2; protein BTG2 K14443 TOB; protein Tob/BTG
E 378946 btg4; protein BTG4 K14443 TOB; protein Tob/BTG
E 386629 tob1a; protein Tob1a K14443 TOB; protein Tob/BTG
E 406245 tob1b; protein Tob1b K14443 TOB; protein Tob/BTG
E 492479 btg3; protein BTG3 isoform 2 K14443 TOB; protein Tob/BTG
E 100538016 si:dkey-79d12.5; maternal B9.15 protein-like isoform X1 K14443 TOB; protein Tob/BTG
E 541411 eif4enif1; eukaryotic translation initiation factor 4E transporter K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 100009659 patl1; protein PAT1 homolog 1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 504054 edc3; enhancer of mRNA-decapping protein 3 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 565659 edc4; enhancer of mRNA-decapping protein 4 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 140631 nanos3; nanos homolog 3 K18761 NANOS3; protein nanos 3
E 569006 upf2; LOW QUALITY PROTEIN: regulator of nonsense transcripts 2 K14327 UPF2; regulator of nonsense transcripts 2
E 393929 upf3b; regulator of nonsense transcripts 3B K14328 UPF3; regulator of nonsense transcripts 3
E 566608 upf3a; regulator of nonsense transcripts 3A K14328 UPF3; regulator of nonsense transcripts 3
E 561754 trim71; E3 ubiquitin-protein ligase TRIM71 K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27]
E 324088 polr2g; DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
E 100001092 eif2ak2; interferon-induced, double-stranded RNA-activated protein kinase K16195 EIF2AK2; eukaryotic translation initiation factor 2-alpha kinase 2 [EC:2.7.11.1]
E 369189 zar1; zygote arrest protein 1 K18762 ZAR1; zygote arrest protein 1
E 561189 zar1l; ZAR1-like protein K18762 ZAR1; zygote arrest protein 1
E 327606 ythdf1; YTH domain-containing family protein 1 K20102 YTHDF; YTH domain-containing family protein
E 334191 ythdf3; YTH domain-containing family protein 3 K20102 YTHDF; YTH domain-containing family protein
E 393220 ythdf2; YTH domain-containing family protein 2 K20102 YTHDF; YTH domain-containing family protein
D Stress granule specific factors
E 394107 tial1; nucleolysin TIAR K13201 TIA1; nucleolysin TIA-1/TIAR
E 323447 tia1l; cytotoxic granule-associated RNA binding protein 1, like K13201 TIA1; nucleolysin TIA-1/TIAR
E 793165 tia1; nucleolysin TIA-1 isoform p40 K13201 TIA1; nucleolysin TIA-1/TIAR
E 393856 pabpc1b; polyadenylate-binding protein 1b K13126 PABPC; polyadenylate-binding protein
E 327625 pabpc1l; polyadenylate-binding protein 1-like K13126 PABPC; polyadenylate-binding protein
E 606498 pabpc1a; polyadenylate-binding protein 1A K13126 PABPC; polyadenylate-binding protein
E 321035 pabpc4; polyadenylate-binding protein 4 K13126 PABPC; polyadenylate-binding protein
E 334440 stau1; double-stranded RNA-binding protein Staufen homolog 1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 393899 stau2; double-stranded RNA-binding protein Staufen homolog 2 K17597 STAU; double-stranded RNA-binding protein Staufen
E 259191 fmr1; synaptic functional regulator FMR1 K15516 FMR; fragile X mental retardation protein
E 327220 fxr1; RNA-binding protein FXR1 isoform 2 K15516 FMR; fragile X mental retardation protein
E 393180 fxr2; fragile X mental retardation syndrome-related protein 2 K15516 FMR; fragile X mental retardation protein
E 30736 elavl1a; ELAV-like protein 1a K13088 ELAVL1; ELAV-like protein 1
E 30065 elavl1b; ELAV-like protein 1b isoform b K13088 ELAVL1; ELAV-like protein 1
E 335512 g3bp1; ras GTPase-activating protein-binding protein 1 K17265 G3BP1; Ras GTPase-activating protein-binding protein 1 [EC:5.6.2.5 5.6.2.3]
E 556409 g3bp2a; ras GTPase-activating protein-binding protein 2 K24983 G3BP2; Ras GTPase-activating protein-binding protein 2
E 406683 g3bp2b; uncharacterized protein LOC406683 K24983 G3BP2; Ras GTPase-activating protein-binding protein 2
E 573991 eif2a; eukaryotic translation initiation factor 2A K15026 EIF2A; translation initiation factor 2A
E 796380 eif3ba; eukaryotic translation initiation factor 3, subunit Ba K03253 EIF3B; translation initiation factor 3 subunit B
E 399484 eif4a1b; eukaryotic translation initiation factor 4A1B K03257 EIF4A; translation initiation factor 4A
E 386634 eif4a1a; eukaryotic translation initiation factor 4A1A K03257 EIF4A; translation initiation factor 4A
E 406760 eif4a2; eukaryotic initiation factor 4A-II K03257 EIF4A; translation initiation factor 4A
E 394053 eif4a3; eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 336619 eif4bb; eukaryotic translation initiation factor 4Bb K03258 EIF4B; translation initiation factor 4B
E 553214 eif4ba; eukaryotic translation initiation factor 4Ba K03258 EIF4B; translation initiation factor 4B
E 334618 eif4g2b; eukaryotic translation initiation factor 4 gamma 2b K03260 EIF4G; translation initiation factor 4G
E 568761 eif4g3b; eukaryotic translation initiation factor 4 gamma 3 isoform X5 K03260 EIF4G; translation initiation factor 4G
E 572435 eif4g1a; eukaryotic translation initiation factor 4 gamma 1a K03260 EIF4G; translation initiation factor 4G
E 566131 eif4g3a; eukaryotic translation initiation factor 4 gamma 3 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 323453 eif4g2a; eukaryotic translation initiation factor 4 gamma 2a K03260 EIF4G; translation initiation factor 4G
E 337670 rps6kal; ribosomal protein S6 kinase alpha-6 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 338219 rps6ka3a; ribosomal protein S6 kinase alpha-1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 571285 rps6ka2; ribosomal protein S6 kinase alpha-2 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 100009657 rps6ka3b; ribosomal protein S6 kinase alpha-3 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 777728 rps6ka1; ribosomal protein S6 kinase alpha-1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 30722 rack1; small ribosomal subunit protein RACK1 K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein
E 557526 traf2b; TNF receptor-associated factor 2 K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27]
E 564295 traf2a; TNF receptor-associated factor 2 K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27]
E 100005446 TNF receptor-associated factor 2-like K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27]
E 323865 nxf1; nuclear RNA export factor 1 K14284 NXF; nuclear RNA export factor
E 751719 nxf1a; uncharacterized protein LOC751719 K14284 NXF; nuclear RNA export factor
E 565482 hdac6; histone deacetylase 6 K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98]
E 402828 tdrd3; tudor domain-containing protein 3 K18404 TDRD3; tudor domain-containing protein 3
E 563742 larp4b; la-related protein 4B K18763 LARP4; la-related protein 4
E 568283 larp4ab; la-related protein 4 isoform X1 K18763 LARP4; la-related protein 4
E 100332095 larp4aa; La ribonucleoprotein 4Aa K18763 LARP4; la-related protein 4
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
E 360153 dcp1a; mRNA-decapping enzyme 1A K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-]
E 568176 dcp1b; mRNA-decapping enzyme 1B K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 393121 dcp2; m7GpppN-mRNA hydrolase K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 100007313 ddx61; probable ATP-dependent RNA helicase ddx6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 564633 ddx6; probable ATP-dependent RNA helicase DDX6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 504054 edc3; enhancer of mRNA-decapping protein 3 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 565659 edc4; enhancer of mRNA-decapping protein 4 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 100009659 patl1; protein PAT1 homolog 1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
D Lsm complex
E 445157 lsm1; U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 57924 smx5; smx5 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 100535720 lsm3; snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 393669 lsm4; U6 snRNA-associated Sm-like protein LSm4 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 563948 lsm5; U6 snRNA-associated Sm-like protein LSm5 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 415167 lsm6; U6 snRNA-associated Sm-like protein LSm6 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 573047 lsm7; U6 snRNA-associated Sm-like protein LSm7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 566017 lsm8; LSM8 homolog, U6 small nuclear RNA associated K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
D 5' exonucleases
E 394008 xrn1; 5'-3' exoribonuclease 1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E 321940 xrn2; 5'-3' exoribonuclease 2 K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
E 449987 zgc:103759; U8 snoRNA-decapping enzyme K16855 NUDT16; U8 snoRNA-decapping enzyme [EC:3.6.1.62 3.6.1.64]
D Other 5'-3' decay factors
E 402850 dcps; m7GpppX diphosphatase K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E 406550 helz; probable helicase with zinc finger domain K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-]
C 3'-5' decay
D Core exosome factors
E 558857 exosc1; exosome complex component CSL4 K07573 CSL4; exosome complex component CSL4
E 550234 exosc2; exosome complex component RRP4 K03679 RRP4; exosome complex component RRP4
E 565000 exosc3; exosome complex component RRP40 K03681 RRP40; exosome complex component RRP40
E 324574 wu:fc33b09; uncharacterized protein LOC324574 K03681 RRP40; exosome complex component RRP40
E 393712 exosc4; exosome complex component RRP41 K11600 RRP41; exosome complex component RRP41
E 751632 exosc5; exosome complex component RRP46 K12590 RRP46; exosome complex component RRP46
E 326786 exosc6; exosome complex component MTR3 K12587 MTR3; exosome complex component MTR3
E 550247 exosc7; exosome complex component RRP42 K12589 RRP42; exosome complex component RRP42
E 323016 exosc8; exosome complex component RRP43 K12586 RRP43; exosome complex component RRP43
E 450057 exosc9; exosome complex component RRP45 K03678 RRP45; exosome complex component RRP45
D Exosome cofactors
E 100003553 dis3; exosome complex exonuclease RRP44 K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
E 560362 dis3l; DIS3-like exonuclease 1 K18681 DIS3L; DIS3-like exonuclease 1 [EC:3.1.13.-]
E 394064 exosc10; exosome component 10 K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]
E 474329 c1d; nuclear nucleic acid-binding protein C1D K12592 C1D; exosome complex protein LRP1
E 445224 mphosph6; M-phase phosphoprotein 6 K12593 MPHOSPH6; M-phase phosphoprotein 6, animal type
D TRAMP complex
E 557829 papd7; non-canonical poly(A) RNA polymerase PAPD7 isoform X1 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 568678 tent4b; terminal nucleotidyltransferase 4B K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 317641 zcchc7; zinc finger CCHC domain-containing protein 7 K12597 AIR1_2; protein AIR1/2
E 406795 mtrex; exosome RNA helicase MTR4 K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
D Ski complex
E 559653 skic2; helicase SKI2W K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 100332172 ttc37; tetratricopeptide repeat protein 37 K12600 SKI3; superkiller protein 3
E 393827 skic8; superkiller complex protein 8 K12602 WDR61; WD repeat-containing protein 61
D Ccr4-NOT complex
E 553665 cnot6l; CCR4-NOT transcription complex subunit 6-like K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 560386 cnot6b; CCR4-NOT transcription complex, subunit 6b K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 324048 cnot6a; CCR4-NOT transcription complex subunit 6a K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 448949 cnot1; CCR4-NOT transcription complex subunit 1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 100037372 cnot2; CCR4-NOT transcription complex subunit 2 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 327627 cnot3b; CCR4-NOT transcription complex subunit 3b K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 449540 cnot3a; CCR4-NOT transcription complex subunit 3a K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 569055 cnot4a; CCR4-NOT transcription complex subunit 4 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 394144 cnot4b; uncharacterized protein LOC394144 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 768119 cnot7; CCR4-NOT transcription complex subunit 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 406788 cnot8; CCR4-NOT transcription complex subunit 8 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 406632 cnot9; CCR4-NOT transcription complex subunit 9 K12606 RCD1; CCR4-NOT transcription complex subunit 9
E 449918 cnot10; CCR4-NOT transcription complex subunit 10 K12607 CNOT10; CCR4-NOT transcription complex subunit 10
D Pan complex
E 792831 pan2; PAB-dependent poly(A)-specific ribonuclease subunit PAN2 isoform X2 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E 100126012 pan3; PAN2-PAN3 deadenylation complex subunit PAN3 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
D Other 3'-5' decay factors
E 791461 parn; poly(A)-specific ribonuclease PARN isoform 1 K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E 569072 dhx36; ATP-dependent DNA/RNA helicase DHX36 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 492503 si:dkey-42i9.4; uncharacterized protein LOC492503 K14443 TOB; protein Tob/BTG
E 100007655 protein Tob2 K14443 TOB; protein Tob/BTG
E 114432 btg1; protein BTG1 K14443 TOB; protein Tob/BTG
E 30079 btg2; protein BTG2 K14443 TOB; protein Tob/BTG
E 378946 btg4; protein BTG4 K14443 TOB; protein Tob/BTG
E 386629 tob1a; protein Tob1a K14443 TOB; protein Tob/BTG
E 406245 tob1b; protein Tob1b K14443 TOB; protein Tob/BTG
E 492479 btg3; protein BTG3 isoform 2 K14443 TOB; protein Tob/BTG
E 100538016 si:dkey-79d12.5; maternal B9.15 protein-like isoform X1 K14443 TOB; protein Tob/BTG
E 568973 noctb; nocturnin isoform X1 K18764 NOCT; nocturnin [EC:3.1.3.108]
E 572044 nocta; nocturnin isoform X2 K18764 NOCT; nocturnin [EC:3.1.3.108]
E 553641 eri1; 3'-5' exoribonuclease 1 K18416 THEX1; 3'-5' exoribonuclease 1 [EC:3.1.-.-]
E 553667 eri2; ERI1 exoribonuclease 2 K18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-]
E 402850 dcps; m7GpppX diphosphatase K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E 692319 pde12; 2',5'-phosphodiesterase 12 K19612 PDE12; 2',5'-phosphodiesterase [EC:3.1.13.4 3.1.4.-]
E 652982 ireb2; iron-responsive element-binding protein 2 K22416 IREB2; iron-responsive element-binding protein 2
E 406550 helz; probable helicase with zinc finger domain K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-]
E 570654 si:dkey-97a13.6; helicase with zinc finger domain 2 K25165 HELZ2; 3'-5' exoribonuclease HELZ2 [EC:3.1.13.1 5.6.2.6]
E 562461 helz2; helicase with zinc finger domain 2 K25165 HELZ2; 3'-5' exoribonuclease HELZ2 [EC:3.1.13.1 5.6.2.6]
E 794348 nrde2; protein NRDE2 homolog K26109 NRDE2; nuclear exosome regulator NRDE2
E 100149858 samd4a; protein Smaug homolog 1 isoform X1 K27396 SMG; protein Smaug
E 100330543 samd4b; protein Smaug homolog 2 K27396 SMG; protein Smaug
E 100150998 focad; focadhesin K27498 FOCAD; focadhesin
C Other degradation factors
D RNases
E 563108 zc3h12ab; uncharacterized protein LOC563108 K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 100002370 zc3h12b; probable ribonuclease ZC3H12B isoform X1 K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 798235 zc3h12a; endoribonuclease ZC3H12A K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
#
AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E 567505 drosha; ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
E 393717 smfn; small fragment nuclease precursor K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Helicases
D Other RNA degradosome components
E 402874 eno2; gamma-enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 378963 eno3; beta-enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 393668 eno1b; enolase 1b, (alpha) K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 334116 eno1a; enolase 1a, (alpha) K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 100750260 pnpt1; polyribonucleotide nucleotidyltransferase 1, mitochondrial K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E 561416 pfkpb; ATP-dependent 6-phosphofructokinase, platelet type isoform X1 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 447836 pfkma; phosphofructokinase, muscle a K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 560944 pfkpa; ATP-dependent 6-phosphofructokinase, platelet type isoform X7 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 570106 pfkla; ATP-dependent 6-phosphofructokinase, liver type K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 568001 pfkmb; phosphofructokinase, muscle b isoform 2 K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 550259 pfklb; phosphofructokinase, liver b K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E 373085 hspa9; stress-70 protein, mitochondrial K04043 dnaK; molecular chaperone DnaK
E 282676 hspd1; 60 kDa heat shock protein, mitochondrial K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Others
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
E 550234 exosc2; exosome complex component RRP4 K03679 RRP4; exosome complex component RRP4
E 558857 exosc1; exosome complex component CSL4 K07573 CSL4; exosome complex component CSL4
D Cofactors
E 393712 exosc4; exosome complex component RRP41 K11600 RRP41; exosome complex component RRP41
E 550247 exosc7; exosome complex component RRP42 K12589 RRP42; exosome complex component RRP42
D Others
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#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024