+D GENES KO #

  KEGG Orthology (KO) - Desulforamulus reducens

% ! A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:drm00010] D Dred_1810 hexokinase K00844 HK; hexokinase [EC:2.7.1.1] D Dred_2902 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Dred_2313 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D Dred_1798 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D Dred_1352 fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D Dred_3176 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Dred_2989 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D Dred_0134 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D Dred_2991 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Dred_0132 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Dred_2990 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D Dred_0133 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D Dred_0135 phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Dred_2988 phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Dred_2987 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Dred_0136 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Dred_0381 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Dred_2312 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Dred_2469 pyruvate phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D Dred_2466 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D Dred_0365 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dred_0608 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dred_2832 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dred_0047 2-oxoglutarate ferredoxin oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Dred_2825 2-oxoglutarate ferredoxin oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Dred_0048 thiamine pyrophosphate enzyme domain protein TPP-binding protein K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Dred_2824 thiamine pyrophosphate enzyme domain protein TPP-binding protein K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Dred_2797 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D Dred_1495 alcohol dehydrogenase AdhE / acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D Dred_2277 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] D Dred_2081 CoA-binding domain protein K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13] D Dred_1398 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Dred_0332 PTS system D-glucosamine-specific IIB component, Glc family / PTS system D-glucosamine-specific IIC component, Glc family / PTS system D-glucosamine-specific IIA component, Glc family K20118 ptsG; glucose PTS system EIICBA or EIICB component [EC:2.7.1.199] C 00020 Citrate cycle (TCA cycle) [PATH:drm00020] D Dred_3254 isocitrate dehydrogenase (NADP) K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D Dred_0365 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dred_0608 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dred_2832 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dred_0047 2-oxoglutarate ferredoxin oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Dred_2825 2-oxoglutarate ferredoxin oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Dred_0048 thiamine pyrophosphate enzyme domain protein TPP-binding protein K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Dred_2824 thiamine pyrophosphate enzyme domain protein TPP-binding protein K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Dred_0049 pyruvate ferredoxin/flavodoxin oxidoreductase K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3] D Dred_2823 2-oxoglutarate ferredoxin oxidoreductase, gamma subunit K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3] D Dred_0050 4Fe-4S ferredoxin, iron-sulfur binding domain protein K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3] D Dred_2822 4Fe-4S ferredoxin, iron-sulfur binding domain protein K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3] D Dred_1869 succinate dehydrogenase subunit A K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D Dred_1868 succinate dehydrogenase subunit B K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D Dred_1870 succinate dehydrogenase subunit C K00241 sdhC; succinate dehydrogenase cytochrome b subunit D Dred_1872 fumarase alpha subunit K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2] D Dred_1871 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2] D Dred_1867 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37] C 00030 Pentose phosphate pathway [PATH:drm00030] D Dred_2902 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Dred_1716 ribulose-5-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D Dred_3075 transketolase subunit A K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D Dred_3074 transketolase subunit B K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D Dred_3175 transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2] D Dred_3163 sugar-phosphate isomerases, RpiB/LacA/LacB family K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D Dred_1129 deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4] D Dred_2526 ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15] D Dred_1100 phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7] D Dred_1398 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Dred_0100 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D Dred_1830 Aldehyde ferredoxin oxidoreductase K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5] D Dred_2273 Aldehyde ferredoxin oxidoreductase K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5] D Dred_3176 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Dred_1352 fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D Dred_2313 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D Dred_1798 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] C 00040 Pentose and glucuronate interconversions [PATH:drm00040] D Dred_3027 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D Dred_3101 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Dred_1716 ribulose-5-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D Dred_3256 Alcohol dehydrogenase GroES domain protein K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14] D Dred_2062 L-fuculose 1-phosphate aldolase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17] C 00051 Fructose and mannose metabolism [PATH:drm00051] D Dred_3136 mannose-6-phosphate isomerase, type 2 K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D Dred_1397 mannose-6-phosphate isomerase, type 2 K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D Dred_3126 phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D Dred_1398 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Dred_2334 nucleotidyltransferase K16881 K16881; mannose-1-phosphate guanylyltransferase / phosphomannomutase [EC:2.7.7.13 5.4.2.8] D Dred_1394 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D Dred_3135 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D Dred_1395 NAD-dependent epimerase/dehydratase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271] D Dred_2062 L-fuculose 1-phosphate aldolase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17] D Dred_1810 hexokinase K00844 HK; hexokinase [EC:2.7.1.1] D Dred_2313 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D Dred_1798 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D Dred_1352 fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D Dred_3256 Alcohol dehydrogenase GroES domain protein K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14] D Dred_3176 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Dred_2989 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D Dred_0134 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D Dred_3163 sugar-phosphate isomerases, RpiB/LacA/LacB family K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] C 00052 Galactose metabolism [PATH:drm00052] D Dred_3002 UDP-galactose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Dred_1895 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Dred_3101 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Dred_1398 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Dred_1810 hexokinase K00844 HK; hexokinase [EC:2.7.1.1] D Dred_2313 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D Dred_1798 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] C 00053 Ascorbate and aldarate metabolism [PATH:drm00053] D Dred_3027 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D Dred_3026 NAD-dependent epimerase/dehydratase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6] C 00500 Starch and sucrose metabolism [PATH:drm00500] D Dred_3101 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Dred_1897 glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33] D Dred_1456 glucose-1-phosphate adenylyltransferase, GlgD subunit K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] D Dred_1455 glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] D Dred_1457 glycogen synthase (ADP-glucose) K00703 glgA; starch synthase [EC:2.4.1.21] D Dred_1453 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D Dred_2325 (1->4)-alpha-D-glucan branching enzyme K16149 K16149; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D Dred_1364 maltodextrin phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1] D Dred_0443 maltodextrin phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1] D Dred_1459 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25] D Dred_1398 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Dred_1810 hexokinase K00844 HK; hexokinase [EC:2.7.1.1] D Dred_2902 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:drm00520] D Dred_1810 hexokinase K00844 HK; hexokinase [EC:2.7.1.1] D Dred_0295 glutamine--fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Dred_0294 phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10] D Dred_0099 UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D Dred_3148 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Dred_0678 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Dred_3294 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Dred_0677 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D Dred_3159 UDP-N-Acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D Dred_3033 polysaccharide biosynthesis protein CapD K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-] D Dred_3128 transferase hexapeptide repeat containing protein K15913 pglD; UDP-N-acetylbacillosamine N-acetyltransferase [EC:2.3.1.203] D Dred_0332 PTS system D-glucosamine-specific IIB component, Glc family / PTS system D-glucosamine-specific IIC component, Glc family / PTS system D-glucosamine-specific IIA component, Glc family K20118 ptsG; glucose PTS system EIICBA or EIICB component [EC:2.7.1.199] D Dred_1398 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Dred_3101 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Dred_3027 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D Dred_3002 UDP-galactose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Dred_1895 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Dred_3026 NAD-dependent epimerase/dehydratase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6] D Dred_2902 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Dred_3126 phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D Dred_2334 nucleotidyltransferase K16881 K16881; mannose-1-phosphate guanylyltransferase / phosphomannomutase [EC:2.7.7.13 5.4.2.8] D Dred_3136 mannose-6-phosphate isomerase, type 2 K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D Dred_1397 mannose-6-phosphate isomerase, type 2 K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D Dred_1394 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D Dred_3135 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D Dred_3134 DegT/DnrJ/EryC1/StrS aminotransferase K13010 per; perosamine synthetase [EC:2.6.1.102] D Dred_2412 DegT/DnrJ/EryC1/StrS aminotransferase K13010 per; perosamine synthetase [EC:2.6.1.102] D Dred_1395 NAD-dependent epimerase/dehydratase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271] D Dred_1897 glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33] D Dred_1896 NAD-dependent epimerase/dehydratase K01709 rfbG; CDP-glucose 4,6-dehydratase [EC:4.2.1.45] D Dred_1456 glucose-1-phosphate adenylyltransferase, GlgD subunit K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] D Dred_1455 glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] C 00620 Pyruvate metabolism [PATH:drm00620] D Dred_0047 2-oxoglutarate ferredoxin oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Dred_2825 2-oxoglutarate ferredoxin oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Dred_0048 thiamine pyrophosphate enzyme domain protein TPP-binding protein K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Dred_2824 thiamine pyrophosphate enzyme domain protein TPP-binding protein K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Dred_0365 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dred_0608 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dred_2832 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dred_0039 formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D Dred_1305 acetaldehyde dehydrogenase K00132 E1.2.1.10; acetaldehyde dehydrogenase (acetylating) [EC:1.2.1.10] D Dred_3266 acetaldehyde dehydrogenase K00132 E1.2.1.10; acetaldehyde dehydrogenase (acetylating) [EC:1.2.1.10] D Dred_1495 alcohol dehydrogenase AdhE / acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D Dred_2277 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] D Dred_2094 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D Dred_2095 Propanediol utilization protein K15024 K15024; putative phosphotransacetylase [EC:2.3.1.8] D Dred_1306 Propanediol utilization protein K15024 K15024; putative phosphotransacetylase [EC:2.3.1.8] D Dred_0381 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Dred_2312 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Dred_2314 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D Dred_1065 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D Dred_2315 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D Dred_2081 CoA-binding domain protein K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13] D Dred_2797 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D Dred_0735 beta-lactamase domain protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D Dred_2955 Malate dehydrogenase (oxaloacetate-decarboxylating) K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D Dred_1064 acetyl-CoA carboxylase, biotin carboxyl carrier protein K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2] D Dred_1867 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D Dred_1872 fumarase alpha subunit K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2] D Dred_1871 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2] D Dred_2469 pyruvate phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D Dred_2466 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D Dred_1491 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dred_1784 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dred_1892 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dred_0400 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dred_0289 (R)-citramalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D Dred_0285 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D Dred_2339 homocitrate synthase K02594 nifV; homocitrate synthase NifV [EC:2.3.3.14] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:drm00630] D Dred_1867 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D Dred_1491 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dred_1784 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dred_1892 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dred_0400 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dred_1769 cobalamin B12-binding domain protein K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] D Dred_1771 cobalamin B12-binding domain protein K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] D Dred_1768 methylmalonyl-CoA mutase K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] D Dred_2690 Glutamate mutase subunit E K19268 glmE; methylaspartate mutase epsilon subunit [EC:5.4.99.1] D Dred_2692 glutamate mutase subunit S K01846 glmS; methylaspartate mutase sigma subunit [EC:5.4.99.1] D Dred_2689 methylaspartate ammonia-lyase K04835 mal; methylaspartate ammonia-lyase [EC:4.3.1.2] D Dred_1372 protein of unknown function DUF224, cysteine-rich region domain protein K11473 glcF; glycolate dehydrogenase iron-sulfur subunit [EC:1.1.99.14] D Dred_2806 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Dred_2807 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Dred_2810 Glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Dred_3162 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Dred_0722 glycine dehydrogenase (decarboxylating) alpha subunit K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2] D Dred_0723 glycine dehydrogenase (decarboxylating) beta subunit K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2] D Dred_0720 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Dred_0365 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dred_0608 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dred_2832 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dred_0605 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D Dred_0363 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D Dred_0721 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D Dred_2836 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D Dred_1113 Formate dehydrogenase K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D Dred_1114 formate dehydrogenase alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D Dred_1855 molybdopterin oxidoreductase K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D Dred_0462 4Fe-4S ferredoxin, iron-sulfur binding domain protein K00124 fdoH; formate dehydrogenase iron-sulfur subunit D Dred_1115 formate dehydrogenase beta subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit C 00640 Propanoate metabolism [PATH:drm00640] D Dred_2081 CoA-binding domain protein K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13] D Dred_2094 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D Dred_2095 Propanediol utilization protein K15024 K15024; putative phosphotransacetylase [EC:2.3.1.8] D Dred_1306 Propanediol utilization protein K15024 K15024; putative phosphotransacetylase [EC:2.3.1.8] D Dred_0365 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dred_0608 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dred_2832 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dred_0039 formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D Dred_1782 butyryl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D Dred_2314 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D Dred_1065 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D Dred_2315 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D Dred_1769 cobalamin B12-binding domain protein K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] D Dred_1771 cobalamin B12-binding domain protein K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] D Dred_1768 methylmalonyl-CoA mutase K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] D Dred_2797 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D Dred_2527 Methylglyoxal synthase K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3] C 00650 Butanoate metabolism [PATH:drm00650] D Dred_1491 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dred_1784 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dred_1892 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dred_0400 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dred_1493 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D Dred_1890 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D Dred_1780 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D Dred_0347 3-hydroxyacyl-CoA dehydrogenase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D Dred_1781 Enoyl-CoA hydratase/isomerase K01715 crt; enoyl-CoA hydratase [EC:4.2.1.17] D Dred_0401 short chain enoyl-CoA hydratase K01715 crt; enoyl-CoA hydratase [EC:4.2.1.17] D Dred_1492 short chain enoyl-CoA hydratase K01715 crt; enoyl-CoA hydratase [EC:4.2.1.17] D Dred_1782 butyryl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D Dred_1305 acetaldehyde dehydrogenase K00132 E1.2.1.10; acetaldehyde dehydrogenase (acetylating) [EC:1.2.1.10] D Dred_3266 acetaldehyde dehydrogenase K00132 E1.2.1.10; acetaldehyde dehydrogenase (acetylating) [EC:1.2.1.10] D Dred_1495 alcohol dehydrogenase AdhE / acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D Dred_0403 Glutaconate CoA-transferase K01039 gctA; glutaconate CoA-transferase, subunit A [EC:2.8.3.12] D Dred_0404 Glutaconate CoA-transferase K01040 gctB; glutaconate CoA-transferase, subunit B [EC:2.8.3.12] D Dred_1891 Glutaconate CoA-transferase K01040 gctB; glutaconate CoA-transferase, subunit B [EC:2.8.3.12] D Dred_1869 succinate dehydrogenase subunit A K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D Dred_1868 succinate dehydrogenase subunit B K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D Dred_1870 succinate dehydrogenase subunit C K00241 sdhC; succinate dehydrogenase cytochrome b subunit D Dred_0039 formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D Dred_0047 2-oxoglutarate ferredoxin oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Dred_2825 2-oxoglutarate ferredoxin oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D Dred_0048 thiamine pyrophosphate enzyme domain protein TPP-binding protein K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Dred_2824 thiamine pyrophosphate enzyme domain protein TPP-binding protein K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11] D Dred_0281 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Dred_0284 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Dred_0282 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Dred_2896 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] C 00660 C5-Branched dibasic acid metabolism [PATH:drm00660] D Dred_0281 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Dred_0284 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Dred_0282 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Dred_2896 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Dred_2689 methylaspartate ammonia-lyase K04835 mal; methylaspartate ammonia-lyase [EC:4.3.1.2] D Dred_2690 Glutamate mutase subunit E K19268 glmE; methylaspartate mutase epsilon subunit [EC:5.4.99.1] D Dred_2692 glutamate mutase subunit S K01846 glmS; methylaspartate mutase sigma subunit [EC:5.4.99.1] D Dred_0286 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D Dred_2338 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D Dred_0287 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D Dred_2337 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D Dred_0288 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] C 00562 Inositol phosphate metabolism [PATH:drm00562] D Dred_2741 phospholipase C zinc-binding protein K01114 plc; phospholipase C [EC:3.1.4.3] D Dred_2989 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D Dred_0134 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:drm00190] D Dred_2046 NADH dehydrogenase subunit A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2] D Dred_2045 NADH dehydrogenase subunit B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2] D Dred_2044 NADH dehydrogenase subunit C K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2] D Dred_2043 NADH dehydrogenase subunit D K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2] D Dred_1656 NADH dehydrogenase (ubiquinone), 24 kDa subunit K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2] D Dred_3292 NADH dehydrogenase (ubiquinone), 24 kDa subunit K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2] D Dred_1653 NADH dehydrogenase subunit E K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2] D Dred_1858 NADH dehydrogenase subunit E K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2] D Dred_1652 NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2] D Dred_1655 NADH dehydrogenase (quinone) K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2] D Dred_3291 NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2] D Dred_1857 NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2] D Dred_1856 molybdopterin oxidoreductase Fe4S4 region K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2] D Dred_3290 NAD(P)-dependent iron-only hydrogenase catalytic subunit K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2] D Dred_1654 NAD(P)-dependent iron-only hydrogenase catalytic subunit K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2] D Dred_2042 NADH dehydrogenase subunit H K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2] D Dred_2041 NADH dehydrogenase subunit I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2] D Dred_2038 NADH dehydrogenase subunit L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2] D Dred_2037 NADH dehydrogenase subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2] D Dred_2036 NADH dehydrogenase subunit N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2] D Dred_2039 NADH dehydrogenase subunit K K05576 ndhE; NAD(P)H-quinone oxidoreductase subunit 4L [EC:7.1.1.2] D Dred_0434 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9] D Dred_1869 succinate dehydrogenase subunit A K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D Dred_1868 succinate dehydrogenase subunit B K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D Dred_1870 succinate dehydrogenase subunit C K00241 sdhC; succinate dehydrogenase cytochrome b subunit D Dred_1639 cytochrome bd quinol oxidase subunit 1 apoprotein K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D Dred_1640 cytochrome bd quinol oxidase subunit 2 apoprotein K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D Dred_3152 ATP synthase F1 subcomplex alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D Dred_3150 ATP synthase F1 subcomplex beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D Dred_3151 ATP synthase F1 subcomplex gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D Dred_3153 ATP synthase F1 subcomplex delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D Dred_3149 ATP synthase F1 subcomplex epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D Dred_3156 ATP synthase F0 subcomplex A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D Dred_3154 ATP synthase F0 subcomplex B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b D Dred_3155 ATP synthase F0 subcomplex C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c D Dred_2097 Inorganic diphosphatase K15986 ppaC; manganese-dependent inorganic pyrophosphatase [EC:3.6.1.1] D Dred_2449 HAD-superfamily hydrolase, subfamily IA, variant 3 K06019 ppaX; pyrophosphatase PpaX [EC:3.6.1.1] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation in photosynthetic organisms C 00720 Carbon fixation pathways in prokaryotes C 00680 Methane metabolism [PATH:drm00680] D Dred_1113 Formate dehydrogenase K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D Dred_1114 formate dehydrogenase alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D Dred_1855 molybdopterin oxidoreductase K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D Dred_0462 4Fe-4S ferredoxin, iron-sulfur binding domain protein K00124 fdoH; formate dehydrogenase iron-sulfur subunit D Dred_1115 formate dehydrogenase beta subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit D Dred_1330 formate dehydrogenase, beta subunit (F420) K00125 fdhB; formate dehydrogenase (coenzyme F420) beta subunit [EC:1.17.98.3 1.8.98.6] D Dred_0139 4Fe-4S ferredoxin, iron-sulfur binding domain protein K00125 fdhB; formate dehydrogenase (coenzyme F420) beta subunit [EC:1.17.98.3 1.8.98.6] D Dred_0146 4Fe-4S ferredoxin, iron-sulfur binding domain protein K00125 fdhB; formate dehydrogenase (coenzyme F420) beta subunit [EC:1.17.98.3 1.8.98.6] D Dred_0652 carbon-monoxide dehydrogenase, catalytic subunit K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4] D Dred_3162 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Dred_2987 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Dred_0136 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Dred_1867 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D Dred_3176 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D Dred_1352 fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D Dred_2313 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D Dred_1798 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90] D Dred_0137 4Fe-4S ferredoxin, iron-sulfur binding domain protein K03388 hdrA2; heterodisulfide reductase subunit A2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6] D Dred_0356 4Fe-4S ferredoxin, iron-sulfur binding domain protein K03388 hdrA2; heterodisulfide reductase subunit A2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6] D Dred_1327 4Fe-4S ferredoxin, iron-sulfur binding domain protein K03388 hdrA2; heterodisulfide reductase subunit A2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6] D Dred_1328 4Fe-4S ferredoxin, iron-sulfur binding domain protein K03388 hdrA2; heterodisulfide reductase subunit A2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6] D Dred_0143 tungsten-dependent benzoyl-CoA reductase-related protein bamE K03388 hdrA2; heterodisulfide reductase subunit A2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6] D Dred_0634 succinate dehydrogenase subunit C K03389 hdrB2; heterodisulfide reductase subunit B2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6] D Dred_0357 CoB--CoM heterodisulfide reductase K03389 hdrB2; heterodisulfide reductase subunit B2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6] D Dred_1326 protein of unknown function DUF224, cysteine-rich region domain protein K03389 hdrB2; heterodisulfide reductase subunit B2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6] D Dred_0633 putative heterodisulfide reductase, C subunit K03390 hdrC2; heterodisulfide reductase subunit C2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6] D Dred_0358 putative heterodisulfide reductase, C subunit K03390 hdrC2; heterodisulfide reductase subunit C2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6] D Dred_1325 heterodisulfide reductase, C subunit K03390 hdrC2; heterodisulfide reductase subunit C2 [EC:1.8.7.3 1.8.98.4 1.8.98.5 1.8.98.6] D Dred_1329 F420-non-reducing hydrogenase subunit D K14127 mvhD; F420-non-reducing hydrogenase iron-sulfur subunit [EC:1.12.99.- 1.8.98.5 1.8.98.6] D Dred_2094 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D Dred_2466 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2] D Dred_0135 phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Dred_2988 phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Dred_0014 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Dred_1908 phosphoglycerate mutase K22305 psp; phosphoserine phosphatase [EC:3.1.3.3] D Dred_1677 phosphosulfolactate synthase K08097 comA; phosphosulfolactate synthase [EC:4.4.1.19] D Dred_2444 2-phosphosulfolactate phosphatase K05979 comB; 2-phosphosulfolactate phosphatase [EC:3.1.3.71] C 00910 Nitrogen metabolism [PATH:drm00910] D Dred_0701 respiratory nitrite reductase (cytochrome; ammonia-forming) precursor K03385 nrfA; nitrite reductase (cytochrome c-552) [EC:1.7.2.2] D Dred_0700 respiratory nitrite reductase specific menaquinol--cytochrome-c reductase (NrfH) precursor K15876 nrfH; cytochrome c nitrite reductase small subunit D Dred_2818 Mo-nitrogenase MoFe protein subunit NifD precursor K02586 nifD; nitrogenase molybdenum-iron protein alpha chain [EC:1.18.6.1] D Dred_2817 Mo-nitrogenase MoFe protein subunit NifK K02591 nifK; nitrogenase molybdenum-iron protein beta chain [EC:1.18.6.1] D Dred_2821 Mo-nitrogenase iron protein subunit NifH K02588 nifH; nitrogenase iron protein NifH D Dred_0423 hybrid cluster protein K05601 hcp; hydroxylamine reductase [EC:1.7.99.1] D Dred_2940 hydroxylamine reductase precursor K05601 hcp; hydroxylamine reductase [EC:1.7.99.1] D Dred_2938 hybrid cluster protein K05601 hcp; hydroxylamine reductase [EC:1.7.99.1] D Dred_2913 2-nitropropane dioxygenase, NPD K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16] D Dred_2806 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Dred_2807 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Dred_2810 Glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Dred_2805 glutamate synthase (NADH) large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D Dred_2969 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D Dred_1071 sulfide dehydrogenase (flavoprotein) subunit SudA K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D Dred_2804 glutamate synthase (NADH) small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D Dred_2168 carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1] D Dred_0448 hypothetical protein K01673 cynT; carbonic anhydrase [EC:4.2.1.1] C 00920 Sulfur metabolism [PATH:drm00920] D Dred_1573 extracellular solute-binding protein, family 3 K15553 ssuA; sulfonate transport system substrate-binding protein D Dred_1575 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein D Dred_1574 ABC transporter related protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D Dred_0635 sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4] D Dred_1955 phosphoesterase, RecJ domain protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] D Dred_0637 dissimilatory adenylylsulfate reductase alpha subunit precursor K00394 aprA; adenylylsulfate reductase, subunit A [EC:1.8.99.2] D Dred_0636 dissimilatory adenylylsulfate reductase beta subunit K00395 aprB; adenylylsulfate reductase, subunit B [EC:1.8.99.2] D Dred_0697 4Fe-4S ferredoxin, iron-sulfur binding domain protein K00385 asrC; anaerobic sulfite reductase subunit C D Dred_3187 dissimilatory sulfite reductase alpha subunit K11180 dsrA; dissimilatory sulfite reductase alpha subunit [EC:1.8.1.22] D Dred_3186 dissimilatory sulfite reductase beta subunit K11181 dsrB; dissimilatory sulfite reductase beta subunit [EC:1.8.1.22] D Dred_3199 Nitrate reductase, gamma subunit K27187 dsrM; [DsrC]-trisulfide reductase subunit M [EC:1.8.5.10] D Dred_3198 protein of unknown function DUF224, cysteine-rich region domain protein K27188 dsrK; [DsrC]-trisulfide reductase subunit K [EC:1.8.5.10] D Dred_0192 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D Dred_1362 Pyridoxal-5'-phosphate-dependent enzyme, beta subunit K01738 cysK; cysteine synthase [EC:2.5.1.47] D Dred_2871 cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:drm00061] D Dred_2314 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D Dred_1065 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D Dred_2315 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D Dred_2071 acyl carrier protein K02078 acpP; acyl carrier protein D Dred_2073 [Acyl-carrier-protein] S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D Dred_2075 3-oxoacyl-[acyl-carrier-protein] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D Dred_2070 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Dred_2072 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Dred_3103 3-hydroxyacyl-[acyl-carrier-protein] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D Dred_2074 2-nitropropane dioxygenase, NPD K02371 fabK; enoyl-[acyl-carrier protein] reductase II [EC:1.3.1.9] D Dred_2963 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] C 00062 Fatty acid elongation C 00071 Fatty acid degradation [PATH:drm00071] D Dred_1491 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dred_1784 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dred_1892 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dred_0400 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dred_0348 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D Dred_0347 3-hydroxyacyl-CoA dehydrogenase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D Dred_1782 butyryl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D Dred_2963 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Dred_1495 alcohol dehydrogenase AdhE / acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D Dred_2277 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] C 00073 Cutin, suberine and wax biosynthesis C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism [PATH:drm00561] D Dred_2845 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D Dred_2076 phosphate:acyl-[acyl carrier protein] acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D Dred_1161 acyl-phosphate glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D Dred_1153 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D Dred_2481 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] D Dred_1800 1,2-diacylglycerol 3-glucosyltransferase K19002 mgs; 1,2-diacylglycerol 3-alpha-glucosyltransferase [EC:2.4.1.337] D Dred_1966 Monogalactosyldiacylglycerol synthase K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315] C 00564 Glycerophospholipid metabolism [PATH:drm00564] D Dred_1162 glycerol 3-phosphate dehydrogenase (NAD(P)+) K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D Dred_2844 glycerol 3-phosphate dehydrogenase (quinone) subunit A K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D Dred_2843 glycerol 3-phosphate dehydrogenase (quinone) subunit B K00112 glpB; glycerol-3-phosphate dehydrogenase subunit B [EC:1.1.5.3] D Dred_2842 glycerol 3-phosphate dehydrogenase (quinone) subunit C K00113 glpC; glycerol-3-phosphate dehydrogenase subunit C D Dred_1161 acyl-phosphate glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D Dred_1153 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D Dred_2481 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] D Dred_2741 phospholipase C zinc-binding protein K01114 plc; phospholipase C [EC:3.1.4.3] D Dred_1297 Reactivating factor of Adenosylcobalamin-dependent ethanolamine ammonia lyase K04019 eutA; ethanolamine utilization protein EutA D Dred_1295 Ethanolamine ammonia-lyase heavy chain K03735 eutB; ethanolamine ammonia-lyase large subunit [EC:4.3.1.7] D Dred_1296 Ethanolamine ammonia-lyase light chain K03736 eutC; ethanolamine ammonia-lyase small subunit [EC:4.3.1.7] D Dred_1972 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D Dred_1744 CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D Dred_0445 phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65] D Dred_1925 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] C 00565 Ether lipid metabolism D Dred_2741 phospholipase C zinc-binding protein K01114 plc; phospholipase C [EC:3.1.4.3] C 00600 Sphingolipid metabolism C 00590 Arachidonic acid metabolism C 00591 Linoleic acid metabolism C 00592 alpha-Linolenic acid metabolism [PATH:drm00592] D Dred_0348 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01040 Biosynthesis of unsaturated fatty acids B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:drm00230] D Dred_1901 NUDIX hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D Dred_1100 phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7] D Dred_1398 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Dred_0100 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D Dred_2365 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D Dred_2361 phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13] D Dred_2363 formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D Dred_2366 phosphoribosylformylglycinamidine synthase subunit II K23269 purL; phosphoribosylformylglycinamidine synthase subunit PurL [EC:6.3.5.3] D Dred_2368 phosphoribosylformylglycinamidine synthase, purS K23264 purS; phosphoribosylformylglycinamidine synthase subunit PurS [EC:6.3.5.3] D Dred_2367 phosphoribosylformylglycinamidine synthase subunit I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D Dred_2364 phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] D Dred_2371 5-(carboxyamino)imidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D Dred_2369 phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] D Dred_2370 Adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D Dred_2362 phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D Dred_0732 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D Dred_1760 3'-nucleotidase / 5'-nucleotidase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D Dred_0706 protein of unknown function DUF152 K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D Dred_2376 hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] D Dred_1906 inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D Dred_0127 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D Dred_2683 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D Dred_2173 xanthine phosphoribosyltransferase K03816 xpt; xanthine phosphoribosyltransferase [EC:2.4.2.22] D Dred_2375 GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D Dred_1700 guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8] D Dred_0693 ribonucleoside-triphosphate reductase class III catalytic subunit K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D Dred_2464 putative deoxyguanosinetriphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1] D Dred_0733 (p)ppGpp synthetase I, SpoT/RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D Dred_1179 Ppx/GppA phosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D Dred_0123 Ppx/GppA phosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D Dred_3090 putative Chase2 sensor protein K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D Dred_3300 Adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D Dred_2771 Adenine deaminase K01486 ade; adenine deaminase [EC:3.5.4.2] D Dred_1917 metallophosphoesterase K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16] D Dred_1718 Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D Dred_2520 histidine triad (HIT) protein K19710 E2.7.7.53; ATP adenylyltransferase [EC:2.7.7.53] D Dred_0635 sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4] C 00240 Pyrimidine metabolism [PATH:drm00240] D Dred_0275 carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D Dred_1684 carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D Dred_2232 carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D Dred_1683 carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D Dred_1681 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D Dred_1682 dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3] D Dred_1686 dihydroorotate oxidase B, catalytic subunit K17828 pyrDI; dihydroorotate dehydrogenase (NAD+) catalytic subunit [EC:1.3.1.14] D Dred_1685 dihydroorotate oxidase B, electron transfer subunit K02823 pyrDII; dihydroorotate dehydrogenase electron transfer subunit D Dred_1689 orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D Dred_1687 orotidine-5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D Dred_1976 uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D Dred_0127 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D Dred_2550 maf protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-] D Dred_3181 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2] D Dred_1152 cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D Dred_0041 phosphoribulokinase/uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48] D Dred_1760 3'-nucleotidase / 5'-nucleotidase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D Dred_1318 uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9] D Dred_1680 Uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D Dred_1917 metallophosphoesterase K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16] D Dred_1101 thymidine phosphorylase K00756 pdp; pyrimidine-nucleoside phosphorylase [EC:2.4.2.2] D Dred_2480 cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5] D Dred_0693 ribonucleoside-triphosphate reductase class III catalytic subunit K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D Dred_3161 CMP/dCMP deaminase, zinc-binding protein K01493 comEB; dCMP deaminase [EC:3.5.4.12] D Dred_0059 thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D Dred_0491 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D Dred_1200 thymidylate synthase (FAD) K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] D Dred_0195 thymidylate synthase (FAD) K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] D Dred_0261 dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:drm00250] D Dred_1696 L-aspartate aminotransferase apoenzyme K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Dred_1148 aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1] D Dred_0164 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D Dred_2812 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D Dred_2191 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase K13566 NIT2; omega-amidase [EC:3.5.1.3] D Dred_2280 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase K13566 NIT2; omega-amidase [EC:3.5.1.3] D Dred_2866 L-alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1] D Dred_0277 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D Dred_0278 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D Dred_3300 Adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D Dred_2370 Adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D Dred_1681 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D Dred_2805 glutamate synthase (NADH) large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D Dred_2969 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D Dred_1071 sulfide dehydrogenase (flavoprotein) subunit SudA K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D Dred_2804 glutamate synthase (NADH) small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D Dred_1731 delta-1-pyrroline-5-carboxylate dehydrogenase K00294 E1.2.1.88; 1-pyrroline-5-carboxylate dehydrogenase [EC:1.2.1.88] D Dred_2806 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Dred_2807 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Dred_2810 Glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Dred_0275 carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D Dred_1684 carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D Dred_2232 carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D Dred_1683 carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D Dred_2367 phosphoribosylformylglycinamidine synthase subunit I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D Dred_0295 glutamine--fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Dred_2365 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] C 00260 Glycine, serine and threonine metabolism [PATH:drm00260] D Dred_1167 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Dred_1940 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Dred_1941 aspartate semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Dred_1165 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D Dred_1166 homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39] D Dred_1379 L-threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D Dred_0615 L-threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D Dred_0105 L-threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48] D Dred_3162 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Dred_0135 phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Dred_2988 phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D Dred_0014 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Dred_1908 phosphoglycerate mutase K22305 psp; phosphoserine phosphatase [EC:3.1.3.3] D Dred_0722 glycine dehydrogenase (decarboxylating) alpha subunit K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2] D Dred_0723 glycine dehydrogenase (decarboxylating) beta subunit K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2] D Dred_0720 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Dred_0365 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dred_0608 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dred_2832 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dred_0605 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D Dred_0363 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D Dred_0721 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D Dred_2836 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D Dred_1744 CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D Dred_0699 Methyltransferase type 11 K18896 gsmt; glycine/sarcosine N-methyltransferase [EC:2.1.1.156] D Dred_1252 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D Dred_1253 2-hydroxymethylglutarate dehydratase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D Dred_0097 L-threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D Dred_0254 tryptophan synthase, alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D Dred_1361 tryptophan synthase, beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D Dred_0253 tryptophan synthase, beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] C 00270 Cysteine and methionine metabolism [PATH:drm00270] D Dred_0192 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D Dred_1362 Pyridoxal-5'-phosphate-dependent enzyme, beta subunit K01738 cysK; cysteine synthase [EC:2.5.1.47] D Dred_2871 cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47] D Dred_2207 methionine synthase (B12-dependent) K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Dred_1750 methylenetetrahydrofolate reductase K24042 yitJ; methionine synthase / methylenetetrahydrofolate reductase (NADH) [EC:2.1.1.13 1.5.1.54] D Dred_1751 methionine synthase (B12-independent) K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D Dred_3096 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D Dred_1479 adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D Dred_2200 adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D Dred_0488 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D Dred_2930 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D Dred_0706 protein of unknown function DUF152 K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D Dred_2061 amidohydrolase K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28] D Dred_2065 methylthioadenosine phosphorylase K19696 mtiP; 5'-methylthioinosine phosphorylase [EC:2.4.2.44] D Dred_1773 translation initiation factor 2B subunit I family (IF-2BI) K08963 mtnA; methylthioribose-1-phosphate isomerase [EC:5.3.1.23] D Dred_2064 methylthioribose-1-phosphate isomerase K08963 mtnA; methylthioribose-1-phosphate isomerase [EC:5.3.1.23] D Dred_2063 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D Dred_1167 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Dred_1940 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Dred_1941 aspartate semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Dred_1165 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D Dred_0101 protein of unknown function DUF39 K23975 E2.8.1.16; L-aspartate semialdehyde sulfurtransferase [EC:2.8.1.16] D Dred_0102 4Fe-4S ferredoxin, iron-sulfur binding domain protein K23976 K23976; L-aspartate semialdehyde sulfurtransferase ferredoxin D Dred_2144 branched chain amino acid aminotransferase apoenzyme K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Dred_1696 L-aspartate aminotransferase apoenzyme K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Dred_1148 aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1] D Dred_2797 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D Dred_0413 pyridoxal phosphate-dependent enzyme, D-cysteine desulfhydrase family K05396 dcyD; D-cysteine desulfhydrase [EC:4.4.1.15] D Dred_0406 D-cysteine desulfhydrase K05396 dcyD; D-cysteine desulfhydrase [EC:4.4.1.15] D Dred_1867 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D Dred_1252 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D Dred_1253 2-hydroxymethylglutarate dehydratase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D Dred_0014 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] C 00280 Valine, leucine and isoleucine degradation [PATH:drm00280] D Dred_2144 branched chain amino acid aminotransferase apoenzyme K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Dred_0365 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dred_0608 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dred_2832 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dred_1782 butyryl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D Dred_0348 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D Dred_1769 cobalamin B12-binding domain protein K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] D Dred_1771 cobalamin B12-binding domain protein K01849 E5.4.99.2B; methylmalonyl-CoA mutase, C-terminal domain [EC:5.4.99.2] D Dred_1768 methylmalonyl-CoA mutase K01848 E5.4.99.2A; methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] D Dred_1491 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dred_1784 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dred_1892 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dred_0400 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:drm00290] D Dred_0097 L-threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D Dred_0286 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D Dred_2338 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D Dred_0287 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D Dred_2337 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D Dred_0288 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] D Dred_0281 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Dred_0284 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Dred_0282 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Dred_2896 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Dred_0283 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D Dred_0280 dihydroxyacid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D Dred_2144 branched chain amino acid aminotransferase apoenzyme K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Dred_0289 (R)-citramalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D Dred_0285 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00300 Lysine biosynthesis [PATH:drm00300] D Dred_1165 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D Dred_1167 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Dred_1940 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Dred_1941 aspartate semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Dred_1939 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D Dred_1944 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D Dred_0274 acetylornithine aminotransferase apoenzyme K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D Dred_1694 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D Dred_1695 LL-diaminopimelate aminotransferase apoenzyme K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83] D Dred_1913 LL-diaminopimelate aminotransferase apoenzyme K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83] D Dred_1130 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D Dred_3249 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D Dred_2905 aromatic amino acid aminotransferase apoenzyme / 2-aminoadipate aminotransferase apoenzyme K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-] D Dred_2906 putative transcriptional regulator, GntR family K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-] D Dred_0670 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D Dred_0671 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] C 00310 Lysine degradation [PATH:drm00310] D Dred_0365 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dred_0608 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dred_2832 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dred_1491 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dred_1784 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dred_1892 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dred_0400 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dred_2058 aminotransferase K09251 patA; putrescine aminotransferase [EC:2.6.1.82] D Dred_0740 L-lysine 2,3-aminomutase K01843 kamA; lysine 2,3-aminomutase [EC:5.4.3.2] C 00220 Arginine biosynthesis [PATH:drm00220] D Dred_0276 ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D Dred_0277 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D Dred_0278 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D Dred_2367 phosphoribosylformylglycinamidine synthase subunit I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D Dred_2806 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Dred_2807 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Dred_2810 Glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Dred_1696 L-aspartate aminotransferase apoenzyme K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Dred_1148 aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1] D Dred_2898 N-acetylglutamate synthase K00619 argA; amino-acid N-acetyltransferase [EC:2.3.1.1] D Dred_0272 N-acetylglutamate synthase / glutamate N-acetyltransferase K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1] D Dred_0273 N-acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8] D Dred_0271 N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] D Dred_0274 acetylornithine aminotransferase apoenzyme K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] C 00330 Arginine and proline metabolism [PATH:drm00330] D Dred_1559 5-oxoprolinase (ATP-hydrolyzing) K01473 hyuA; N-methylhydantoinase A [EC:3.5.2.14] D Dred_1560 5-oxoprolinase (ATP-hydrolyzing) K01474 hyuB; N-methylhydantoinase B [EC:3.5.2.14] D Dred_0058 arginine decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19] D Dred_1815 arginine decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19] D Dred_0487 arginine decarboxylase K02626 pdaD; arginine decarboxylase [EC:4.1.1.19] D Dred_0489 agmatinase K01480 speB; agmatinase [EC:3.5.3.11] D Dred_1548 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase K12251 aguB; N-carbamoylputrescine amidase [EC:3.5.1.53] D Dred_0488 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D Dred_2930 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D Dred_1479 adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D Dred_2200 adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D Dred_2058 aminotransferase K09251 patA; putrescine aminotransferase [EC:2.6.1.82] D Dred_1168 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2] D Dred_1731 delta-1-pyrroline-5-carboxylate dehydrogenase K00294 E1.2.1.88; 1-pyrroline-5-carboxylate dehydrogenase [EC:1.2.1.88] D Dred_1170 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D Dred_1169 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] D Dred_2965 pyruvate formate-lyase K23121 pflD; trans-4-hydroxy-L-proline dehydratase [EC:4.2.1.172] D Dred_1696 L-aspartate aminotransferase apoenzyme K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Dred_1148 aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1] C 00340 Histidine metabolism [PATH:drm00340] D Dred_2356 ATP phosphoribosyltransferase catalytic subunit K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17] D Dred_2359 ATP phosphoribosyltransferase regulatory subunit K02502 hisZ; ATP phosphoribosyltransferase regulatory subunit D Dred_2349 phosphoribosyl-ATP pyrophosphatase / phosphoribosyl-AMP cyclohydrolase K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31] D Dred_2351 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] D Dred_2352 imidazole glycerol phosphate synthase subunit hisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10] D Dred_2350 imidazole glycerol phosphate synthase subunit hisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10] D Dred_2353 imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] D Dred_2354 histidinol phosphate aminotransferase apoenzyme K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Dred_0665 histidinol-phosphate phosphatase K04486 E3.1.3.15B; histidinol-phosphatase (PHP family) [EC:3.1.3.15] D Dred_2577 histidinol phosphate phosphatase HisJ family K04486 E3.1.3.15B; histidinol-phosphatase (PHP family) [EC:3.1.3.15] D Dred_2355 histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23] C 00350 Tyrosine metabolism [PATH:drm00350] D Dred_1696 L-aspartate aminotransferase apoenzyme K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Dred_1148 aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1] D Dred_2354 histidinol phosphate aminotransferase apoenzyme K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Dred_1495 alcohol dehydrogenase AdhE / acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D Dred_2277 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] C 00360 Phenylalanine metabolism [PATH:drm00360] D Dred_2884 phenylacetate-CoA ligase K01912 paaK; phenylacetate-CoA ligase [EC:6.2.1.30] D Dred_3190 phenylacetate-CoA ligase K01912 paaK; phenylacetate-CoA ligase [EC:6.2.1.30] D Dred_1493 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D Dred_1890 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D Dred_1780 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D Dred_1696 L-aspartate aminotransferase apoenzyme K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Dred_1148 aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1] D Dred_2354 histidinol phosphate aminotransferase apoenzyme K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] C 00380 Tryptophan metabolism [PATH:drm00380] D Dred_0365 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dred_0608 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dred_2832 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dred_1491 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dred_1784 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dred_1892 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dred_0400 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dred_2018 tryptophanase K01667 tnaA; tryptophanase [EC:4.1.99.1] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:drm00400] D Dred_1149 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K03856 AROA2; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D Dred_0782 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K03856 AROA2; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D Dred_1147 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K03856 AROA2; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D Dred_1021 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4] D Dred_1050 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10] D Dred_1018 shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] D Dred_0781 shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71] D Dred_1020 shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71] D Dred_1151 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] D Dred_1019 chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5] D Dred_0248 anthranilate synthase, component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D Dred_0249 anthranilate synthase, component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D Dred_3255 anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18] D Dred_0250 anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18] D Dred_0252 phosphoribosylanthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24] D Dred_0251 indole-3-glycerol phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48] D Dred_0254 tryptophan synthase, alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D Dred_1361 tryptophan synthase, beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D Dred_0253 tryptophan synthase, beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D Dred_0783 Prephenate dehydratase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51] D Dred_1146 chorismate mutase K06208 aroH; chorismate mutase [EC:5.4.99.5] D Dred_1164 amino acid-binding ACT domain protein K06209 pheB; chorismate mutase [EC:5.4.99.5] D Dred_1150 prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12] D Dred_1696 L-aspartate aminotransferase apoenzyme K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Dred_1148 aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1] D Dred_2354 histidinol phosphate aminotransferase apoenzyme K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism [PATH:drm00410] D Dred_1790 L-aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] D Dred_0162 L-aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] D Dred_1789 pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D Dred_0161 pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D Dred_0261 dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2] D Dred_1782 butyryl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] C 00430 Taurine and hypotaurine metabolism [PATH:drm00430] D Dred_2866 L-alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1] D Dred_2095 Propanediol utilization protein K15024 K15024; putative phosphotransacetylase [EC:2.3.1.8] D Dred_1306 Propanediol utilization protein K15024 K15024; putative phosphotransacetylase [EC:2.3.1.8] D Dred_2094 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D Dred_2750 Formate C-acetyltransferase K25261 islA; isethionate sulfite-lyase [EC:4.4.1.38] D Dred_2752 glycyl-radical enzyme activating protein family K25262 islB; isethionate sulfite-lyase activating enzyme C 00440 Phosphonate and phosphinate metabolism C 00450 Selenocompound metabolism [PATH:drm00450] D Dred_2207 methionine synthase (B12-dependent) K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Dred_1750 methylenetetrahydrofolate reductase K24042 yitJ; methionine synthase / methylenetetrahydrofolate reductase (NADH) [EC:2.1.1.13 1.5.1.54] D Dred_1751 methionine synthase (B12-independent) K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] D Dred_1749 Thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D Dred_2670 thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D Dred_1736 thioredoxin reductase (NADPH) K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D Dred_0635 sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4] D Dred_1241 selenophosphate synthase K01008 selD; selenide, water dikinase [EC:2.7.9.3] D Dred_2186 L-seryl-tRNA(Sec) selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1] D Dred_0065 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism D Dred_3162 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism [PATH:drm00470] D Dred_2865 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D Dred_1796 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Dred_2367 phosphoribosylformylglycinamidine synthase subunit I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D Dred_1240 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D Dred_0673 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D Dred_0413 pyridoxal phosphate-dependent enzyme, D-cysteine desulfhydrase family K05396 dcyD; D-cysteine desulfhydrase [EC:4.4.1.15] D Dred_0406 D-cysteine desulfhydrase K05396 dcyD; D-cysteine desulfhydrase [EC:4.4.1.15] D Dred_1694 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D Dred_1130 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D Dred_3249 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] C 00480 Glutathione metabolism [PATH:drm00480] D Dred_3254 isocitrate dehydrogenase (NADP) K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D Dred_0488 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] D Dred_2930 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation C 00540 Lipopolysaccharide biosynthesis C 00542 O-Antigen repeat unit biosynthesis [PATH:drm00542] D Dred_3102 glycosyl transferase, family 4 K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:drm00541] D Dred_3101 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D Dred_3002 UDP-galactose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Dred_1895 NAD-dependent epimerase/dehydratase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D Dred_3027 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D Dred_3026 NAD-dependent epimerase/dehydratase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6] D Dred_1383 glucose-1-phosphate thymidyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Dred_3038 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Dred_3035 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D Dred_3037 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Dred_3036 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D Dred_1897 glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33] D Dred_1896 NAD-dependent epimerase/dehydratase K01709 rfbG; CDP-glucose 4,6-dehydratase [EC:4.2.1.45] D Dred_3136 mannose-6-phosphate isomerase, type 2 K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D Dred_1397 mannose-6-phosphate isomerase, type 2 K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D Dred_3126 phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8] D Dred_1394 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D Dred_3135 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D Dred_1395 NAD-dependent epimerase/dehydratase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271] D Dred_3134 DegT/DnrJ/EryC1/StrS aminotransferase K13010 per; perosamine synthetase [EC:2.6.1.102] D Dred_2412 DegT/DnrJ/EryC1/StrS aminotransferase K13010 per; perosamine synthetase [EC:2.6.1.102] D Dred_0099 UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D Dred_3159 UDP-N-Acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D Dred_3033 polysaccharide biosynthesis protein CapD K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-] D Dred_3032 NAD-dependent epimerase/dehydratase K19068 wbjC; UDP-2-acetamido-2,6-beta-L-arabino-hexul-4-ose reductase [EC:1.1.1.367] D Dred_3031 UDP-N-acetylglucosamine 2-epimerase K24258 wbjD; UDP-N-acetyl-L-fucosamine synthase [EC:5.1.3.28] C 00550 Peptidoglycan biosynthesis [PATH:drm00550] D Dred_3148 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Dred_0678 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Dred_3294 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Dred_0677 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D Dred_0676 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D Dred_0673 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D Dred_0670 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D Dred_1796 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Dred_0671 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D Dred_1973 Undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D Dred_1450 Di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D Dred_0427 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D Dred_0672 Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D Dred_0675 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D Dred_1646 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Dred_1803 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Dred_2100 penicillin-binding protein, 1A family K21464 pbpG; penicillin-binding protein 2D [EC:2.4.99.28 3.4.16.4] D Dred_2545 peptidoglycan glycosyltransferase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D Dred_0902 Peptidoglycan glycosyltransferase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D Dred_0669 stage V sporulation protein D K08384 spoVD; stage V sporulation protein D (sporulation-specific penicillin-binding protein) D Dred_1713 cell elongation-specific peptidoglycan D,D-transpeptidase K05364 pbpA; penicillin-binding protein A D Dred_0649 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D Dred_2952 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D Dred_1102 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D Dred_1234 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D Dred_1606 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D Dred_2009 domain of unknown function DUF1727 K23393 murT; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13] D Dred_2008 CobB/CobQ domain protein glutamine amidotransferase K07009 gatD; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13] C 00552 Teichoic acid biosynthesis [PATH:drm00552] D Dred_0427 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D Dred_3102 glycosyl transferase, family 4 K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D Dred_3113 N-acetylmannosaminyltransferase K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187] D Dred_3112 cell envelope-related transcriptional attenuator K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-] D Dred_1966 Monogalactosyldiacylglycerol synthase K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315] D Dred_1800 1,2-diacylglycerol 3-glucosyltransferase K19002 mgs; 1,2-diacylglycerol 3-alpha-glucosyltransferase [EC:2.4.1.337] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis [PATH:drm00543] D Dred_3102 glycosyl transferase, family 4 K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D Dred_1593 glycosyl transferase, family 2 K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-] D Dred_0192 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:drm00730] D Dred_2890 hydroxymethylpyrimidine synthase K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17] D Dred_0071 phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] D Dred_0075 thiamine biosynthesis protein ThiF K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73] D Dred_0764 aminotransferase, class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Dred_1001 aminotransferase, class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Dred_0074 tyrosine lyase ThiH K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19] D Dred_2150 iron-only hydrogenase maturation protein HydG K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19] D Dred_1078 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D Dred_0073 thiazole-phosphate synthase K03149 thiG; thiazole synthase [EC:2.8.1.10] D Dred_0594 hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50] D Dred_0076 thiamine-phosphate pyrophosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D Dred_0593 thiamine-phosphate diphosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D Dred_2889 thiamine-phosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16] D Dred_0751 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D Dred_1715 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D Dred_3202 thiamine diphosphokinase K00949 thiN; thiamine pyrophosphokinase [EC:2.7.6.2] D Dred_1718 Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00740 Riboflavin metabolism [PATH:drm00740] D Dred_2091 GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D Dred_2093 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D Dred_0778 3,4-dihydroxy-2-butanone 4-phosphate synthase K02858 ribB; 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12] D Dred_2090 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] D Dred_2092 riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9] D Dred_1953 FMN adenylyltransferase / riboflavin kinase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] D Dred_0594 hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50] D Dred_1901 NUDIX hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D Dred_2477 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00750 Vitamin B6 metabolism [PATH:drm00750] D Dred_1379 L-threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D Dred_0615 L-threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D Dred_0010 pyridoxal phosphate synthase yaaD subunit K06215 pdxS; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6] D Dred_0617 pyridoxal phosphate synthase yaaD subunit K06215 pdxS; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6] D Dred_0415 pyridoxal phosphate synthase yaaD subunit K06215 pdxS; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6] D Dred_0011 pyridoxal phosphate synthase yaaE subunit K08681 pdxT; pyridoxal 5'-phosphate synthase pdxT subunit [EC:4.3.3.6] C 00760 Nicotinate and nicotinamide metabolism [PATH:drm00760] D Dred_0164 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D Dred_0163 quinolinate synthetase A K03517 nadA; quinolinate synthase [EC:2.5.1.72] D Dred_0165 nicotinate-nucleotide pyrophosphorylase (carboxylating) K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] D Dred_1365 conserved hypothetical protein K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21] D Dred_1760 3'-nucleotidase / 5'-nucleotidase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D Dred_2519 nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] D Dred_1657 NH(3)-dependent NAD(+) synthetase K01916 nadE; NAD+ synthase [EC:6.3.1.5] D Dred_1460 NH(3)-dependent NAD(+) synthetase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1] D Dred_2032 Silent information regulator protein Sir2 K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313] D Dred_1081 NAD(+) kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23] C 00770 Pantothenate and CoA biosynthesis [PATH:drm00770] D Dred_0281 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Dred_0284 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D Dred_0282 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Dred_2896 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D Dred_0283 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D Dred_0280 dihydroxyacid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D Dred_1788 ketopantoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] D Dred_0160 ketopantoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] D Dred_1323 ketopantoate reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169] D Dred_1789 pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D Dred_0161 pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D Dred_0171 pantothenate kinase K03525 coaX; type III pantothenate kinase [EC:2.7.1.33] D Dred_1791 pantothenate kinase K03525 coaX; type III pantothenate kinase [EC:2.7.1.33] D Dred_1702 Phosphopantothenoylcysteine decarboxylase / Phosphopantothenate-cysteine ligase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5] D Dred_2084 Phosphopantetheine adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D Dred_1596 dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24] D Dred_2868 holo-[acyl-carrier-protein] synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7] D Dred_2144 branched chain amino acid aminotransferase apoenzyme K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Dred_0261 dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2] D Dred_1790 L-aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] D Dred_0162 L-aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] C 00780 Biotin metabolism [PATH:drm00780] D Dred_2070 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Dred_2072 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Dred_3103 3-hydroxyacyl-[acyl-carrier-protein] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D Dred_0430 biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6] D Dred_2151 iron-only hydrogenase maturation protein HydE K01012 bioB; biotin synthase [EC:2.8.1.6] D Dred_0168 biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] C 00785 Lipoic acid metabolism [PATH:drm00785] D Dred_0609 lipoate-protein ligase B K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181] D Dred_0610 lipoic acid synthetase K03644 lipA; lipoyl synthase [EC:2.8.1.8] D Dred_0365 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dred_0608 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dred_2832 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dred_0722 glycine dehydrogenase (decarboxylating) alpha subunit K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2] D Dred_0723 glycine dehydrogenase (decarboxylating) beta subunit K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2] D Dred_0720 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Dred_0605 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D Dred_0363 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D Dred_0721 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D Dred_2836 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein C 00790 Folate biosynthesis [PATH:drm00790] D Dred_1758 GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16] D Dred_0155 dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81] D Dred_0156 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D Dred_0154 Dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15] D Dred_2552 FolC bifunctional protein K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] D Dred_2091 GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D Dred_1754 preQ(0) biosynthesis protein QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D Dred_1757 Radical SAM domain protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D Dred_1755 exsB protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D Dred_1434 beta-lactamase domain protein K06897 K06897; 7,8-dihydropterin-6-yl-methyl-4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate synthase [EC:2.5.1.105] D Dred_2374 beta-lactamase domain protein K06897 K06897; 7,8-dihydropterin-6-yl-methyl-4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate synthase [EC:2.5.1.105] D Dred_2268 GTP cyclohydrolase subunit MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D Dred_2267 GTP cyclohydrolase subunit MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D Dred_2879 molybdopterin molybdochelatase K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D Dred_2878 molybdopterin molybdochelatase K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D Dred_2761 molybdenum cofactor cytidylyltransferase K07141 mocA; molybdenum cofactor cytidylyltransferase [EC:2.7.7.76] D Dred_1111 molybdenum cofactor guanylyltransferase K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77] C 00670 One carbon pool by folate [PATH:drm00670] D Dred_0129 Formate-tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3] D Dred_1073 methenyltetrahydrofolate cyclohydrolase / 5,10-methylenetetrahydrofolate dehydrogenase (NADP+) K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D Dred_1074 Formimidoyltetrahydrofolate cyclodeaminase K01500 fchA; methenyltetrahydrofolate cyclohydrolase [EC:3.5.4.9] D Dred_3162 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D Dred_2363 formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D Dred_2362 phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D Dred_1705 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D Dred_0720 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D Dred_2207 methionine synthase (B12-dependent) K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D Dred_1750 methylenetetrahydrofolate reductase K24042 yitJ; methionine synthase / methylenetetrahydrofolate reductase (NADH) [EC:2.1.1.13 1.5.1.54] D Dred_1200 thymidylate synthase (FAD) K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] D Dred_0195 thymidylate synthase (FAD) K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] D Dred_2192 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D Dred_2882 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:drm00860] D Dred_2164 glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70] D Dred_2156 glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D Dred_2160 Porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D Dred_2163 hydroxymethylbilane synthase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61] D Dred_2162 uroporphyrinogen-III C-methyltransferase / uroporphyrinogen-III synthase K13542 cobA-hemD; uroporphyrinogen III methyltransferase / synthase [EC:2.1.1.107 4.2.1.75] D Dred_2165 precorrin-2 dehydrogenase K24866 sirC; precorrin-2 dehydrogenase [EC:1.3.1.76] D Dred_2158 transcriptional regulator, AsnC family K22225 ahbAB; siroheme decarboxylase [EC:4.1.1.111] D Dred_2157 transcriptional regulator, AsnC family K22225 ahbAB; siroheme decarboxylase [EC:4.1.1.111] D Dred_2161 Radical SAM domain protein K22226 ahbC; Fe-coproporphyrin III synthase D Dred_2159 Radical SAM domain protein K22227 ahbD; AdoMet-dependent heme synthase [EC:1.3.98.6] D Dred_2730 anaerobic cobaltochelatase K02190 cbiK; sirohydrochlorin cobaltochelatase [EC:4.99.1.3] D Dred_2707 cobalamin (vitamin B12) biosynthesis CbiX protein K03795 cbiX; sirohydrochlorin cobaltochelatase [EC:4.99.1.3] D Dred_2735 cobalt-factor II C20-methyltransferase K03394 cobI-cbiL; precorrin-2/cobalt-factor-2 C20-methyltransferase [EC:2.1.1.130 2.1.1.151] D Dred_2709 precorrin-3 methyltransferase K05934 cobJ; precorrin-3B C17-methyltransferase / cobalt-factor III methyltransferase [EC:2.1.1.131 2.1.1.272] D Dred_2711 precorrin-4 C11-methyltransferase K05936 cobM; precorrin-4/cobalt-precorrin-4 C11-methyltransferase [EC:2.1.1.133 2.1.1.271] D Dred_2710 cobalamin (vitamin B12) biosynthesis CbiG protein K02189 cbiG; cobalt-precorrin 5A hydrolase [EC:3.7.1.12] D Dred_2708 precorrin-6A reductase K05895 cobK-cbiJ; precorrin-6A/cobalt-precorrin-6A reductase [EC:1.3.1.54 1.3.1.106] D Dred_2714 cobalamin biosynthesis protein CbiD K02188 cbiD; cobalt-precorrin-5B (C1)-methyltransferase [EC:2.1.1.195] D Dred_2712 precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit K02191 cbiT; cobalt-precorrin-6B (C15)-methyltransferase [EC:2.1.1.196] D Dred_2713 precorrin-6Y C5,15-methyltransferase (decarboxylating) K03399 cbiE; cobalt-precorrin-7 (C5)-methyltransferase [EC:2.1.1.289] D Dred_2706 precorrin-8X methylmutase K06042 cobH-cbiC; precorrin-8X/cobalt-precorrin-8 methylmutase [EC:5.4.99.61 5.4.99.60] D Dred_2715 cobyrinate a,c-diamide synthase K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11] D Dred_3196 cobyrinate a,c-diamide synthase K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11] D Dred_0067 cob(I)yrinic acid a,c-diamide adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D Dred_1767 cob(I)yrinic acid a,c-diamide adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D Dred_2705 adenosylcobyric acid synthase (glutamine-hydrolysing) K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10] D Dred_2704 adenosylcobinamide-phosphate synthase K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10] D Dred_2681 protein of unknown function DUF105 K08260 cbiZ; adenosylcobinamide hydrolase [EC:3.5.1.90] D Dred_1910 adenosylcobinamide kinase K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62] D Dred_2703 cobalamin-5'-phosphate synthase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26] D Dred_2728 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21] D Dred_2702 GHMP kinase K16651 pduX; L-threonine kinase [EC:2.7.1.177] D Dred_2701 L-threonine O-3-phosphate decarboxylase K04720 cobD; threonine-phosphate decarboxylase [EC:4.1.1.81] D Dred_1300 cobalamin adenosyltransferase K04032 eutT; ethanolamine utilization cobalamin adenosyltransferase [EC:2.5.1.154] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:drm00130] D Dred_2196 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D Dred_2197 3-octaprenyl-4hydroxybenzoate decarboxylase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98] D Dred_2477 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D Dred_2198 demethylmenaquinone methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201] D Dred_2781 1,4-dihydroxy-2-naphtoate prenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74] D Dred_2194 protein of unknown function DUF178 K11782 mqnA; chorismate dehydratase [EC:4.2.1.151] D Dred_2195 Radical SAM domain protein K18285 mqnE; aminodeoxyfutalosine synthase [EC:2.5.1.120] D Dred_3235 conserved hypothetical protein K11783 mqnB; futalosine hydrolase [EC:3.2.2.26] D Dred_2193 Radical SAM domain protein K11784 mqnC; cyclic dehypoxanthinyl futalosine synthase [EC:1.21.98.1] D Dred_3234 protein of unknown function DUF191 K11785 mqnD; 5,8-dihydroxy-2-naphthoate synthase [EC:4.1.99.29] B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:drm00900] D Dred_1078 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D Dred_1970 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] D Dred_0187 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60] D Dred_0094 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] D Dred_0188 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12] D Dred_1968 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3] D Dred_1154 hydroxymethylbutenyl pyrophosphate reductase K02945 RP-S1; small subunit ribosomal protein S1 D Dred_1491 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dred_1784 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dred_1892 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dred_0400 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dred_2477 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D Dred_0474 isopentenyl-diphosphate delta-isomerase K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2] D Dred_1076 farnesyl-diphosphate synthase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] D Dred_2166 Trans-hexaprenyltranstransferase K24873 hepT; heptaprenyl diphosphate synthase component 2 [EC:2.5.1.30] D Dred_2199 conserved hypothetical protein K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D Dred_1973 Undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D Dred_1450 Di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation C 00907 Pinene, camphor and geraniol degradation [PATH:drm00907] D Dred_0348 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins D Dred_3075 transketolase subunit A K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D Dred_3074 transketolase subunit B K00615 E2.2.1.1; transketolase [EC:2.2.1.1] C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis [PATH:drm00523] D Dred_1383 glucose-1-phosphate thymidyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Dred_3038 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Dred_3035 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D Dred_3037 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Dred_3036 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 01054 Nonribosomal peptide structures C 01053 Biosynthesis of siderophore group nonribosomal peptides C 01055 Biosynthesis of vancomycin group antibiotics [PATH:drm01055] D Dred_1257 FMN-dependent alpha-hydroxy acid dehydrogenase K16422 hmo; 4-hydroxymandelate oxidase [EC:1.1.3.46] D Dred_3035 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis C 00332 Carbapenem biosynthesis [PATH:drm00332] D Dred_1170 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D Dred_1169 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] C 00261 Monobactam biosynthesis [PATH:drm00261] D Dred_1257 FMN-dependent alpha-hydroxy acid dehydrogenase K16422 hmo; 4-hydroxymandelate oxidase [EC:1.1.3.46] D Dred_0635 sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4] D Dred_1167 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Dred_1940 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D Dred_1941 aspartate semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D Dred_1939 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D Dred_1944 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:drm00521] D Dred_1810 hexokinase K00844 HK; hexokinase [EC:2.7.1.1] D Dred_1398 phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D Dred_1383 glucose-1-phosphate thymidyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Dred_3038 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Dred_3035 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D Dred_3037 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D Dred_3036 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 00524 Neomycin, kanamycin and gentamicin biosynthesis D Dred_1810 hexokinase K00844 HK; hexokinase [EC:2.7.1.1] C 00525 Acarbose and validamycin biosynthesis [PATH:drm00525] D Dred_1383 glucose-1-phosphate thymidyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Dred_3038 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D Dred_3035 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 00401 Novobiocin biosynthesis [PATH:drm00401] D Dred_1150 prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12] D Dred_1696 L-aspartate aminotransferase apoenzyme K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Dred_1148 aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1] D Dred_2354 histidinol phosphate aminotransferase apoenzyme K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis D Dred_0248 anthranilate synthase, component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D Dred_0249 anthranilate synthase, component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] C 00333 Prodigiosin biosynthesis D Dred_2073 [Acyl-carrier-protein] S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D Dred_2072 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics D Dred_2071 acyl carrier protein K02078 acpP; acyl carrier protein C 00999 Biosynthesis of various plant secondary metabolites [PATH:drm00999] D Dred_3096 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D Dred_1018 shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] C 00997 Biosynthesis of various other secondary metabolites B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation [PATH:drm00362] D Dred_0348 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] D Dred_0347 3-hydroxyacyl-CoA dehydrogenase K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] D Dred_1493 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D Dred_1890 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D Dred_1780 3-hydroxyacyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D Dred_1491 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dred_1784 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dred_1892 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dred_0400 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00627 Aminobenzoate degradation D Dred_2477 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00364 Fluorobenzoate degradation C 00625 Chloroalkane and chloroalkene degradation [PATH:drm00625] D Dred_2277 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] D Dred_1495 alcohol dehydrogenase AdhE / acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D Dred_2817 Mo-nitrogenase MoFe protein subunit NifK K02591 nifK; nitrogenase molybdenum-iron protein beta chain [EC:1.18.6.1] D Dred_2821 Mo-nitrogenase iron protein subunit NifH K02588 nifH; nitrogenase iron protein NifH D Dred_2818 Mo-nitrogenase MoFe protein subunit NifD precursor K02586 nifD; nitrogenase molybdenum-iron protein alpha chain [EC:1.18.6.1] C 00361 Chlorocyclohexane and chlorobenzene degradation C 00623 Toluene degradation C 00622 Xylene degradation C 00633 Nitrotoluene degradation [PATH:drm00633] D Dred_0652 carbon-monoxide dehydrogenase, catalytic subunit K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4] D Dred_3187 dissimilatory sulfite reductase alpha subunit K11180 dsrA; dissimilatory sulfite reductase alpha subunit [EC:1.8.1.22] D Dred_3186 dissimilatory sulfite reductase beta subunit K11181 dsrB; dissimilatory sulfite reductase beta subunit [EC:1.8.1.22] C 00642 Ethylbenzene degradation D Dred_0348 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16] C 00643 Styrene degradation D Dred_0403 Glutaconate CoA-transferase K01039 gctA; glutaconate CoA-transferase, subunit A [EC:2.8.3.12] D Dred_0404 Glutaconate CoA-transferase K01040 gctB; glutaconate CoA-transferase, subunit B [EC:2.8.3.12] D Dred_1891 Glutaconate CoA-transferase K01040 gctB; glutaconate CoA-transferase, subunit B [EC:2.8.3.12] C 00791 Atrazine degradation C 00930 Caprolactam degradation C 00363 Bisphenol degradation C 00621 Dioxin degradation C 00626 Naphthalene degradation [PATH:drm00626] D Dred_2277 iron-containing alcohol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1] D Dred_1495 alcohol dehydrogenase AdhE / acetaldehyde dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] C 00624 Polycyclic aromatic hydrocarbon degradation C 00365 Furfural degradation C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:drm03020] D Dred_0207 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D Dred_0208 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D Dred_0243 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D Dred_1701 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] C 03022 Basal transcription factors C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:drm03010] D Dred_1154 hydroxymethylbutenyl pyrophosphate reductase K02945 RP-S1; small subunit ribosomal protein S1 D Dred_0845 RNA binding S1 domain protein K02945 RP-S1; small subunit ribosomal protein S1 D Dred_0977 RNA binding S1 domain protein K02945 RP-S1; small subunit ribosomal protein S1 D Dred_1978 SSU ribosomal protein S2P K02967 RP-S2; small subunit ribosomal protein S2 D Dred_0221 SSU ribosomal protein S3P K02982 RP-S3; small subunit ribosomal protein S3 D Dred_0242 SSU ribosomal protein S4P K02986 RP-S4; small subunit ribosomal protein S4 D Dred_0232 SSU ribosomal protein S5P K02988 RP-S5; small subunit ribosomal protein S5 D Dred_3308 SSU ribosomal protein S6P K02990 RP-S6; small subunit ribosomal protein S6 D Dred_0211 SSU ribosomal protein S7P K02992 RP-S7; small subunit ribosomal protein S7 D Dred_0229 SSU ribosomal protein S8P K02994 RP-S8; small subunit ribosomal protein S8 D Dred_0257 SSU ribosomal protein S9P K02996 RP-S9; small subunit ribosomal protein S9 D Dred_0214 SSU ribosomal protein S10P K02946 RP-S10; small subunit ribosomal protein S10 D Dred_0241 SSU ribosomal protein S11P K02948 RP-S11; small subunit ribosomal protein S11 D Dred_0210 SSU ribosomal protein S12P K02950 RP-S12; small subunit ribosomal protein S12 D Dred_0240 SSU ribosomal protein S13P K02952 RP-S13; small subunit ribosomal protein S13 D Dred_0228 SSU ribosomal protein S14P K02954 RP-S14; small subunit ribosomal protein S14 D Dred_1951 SSU ribosomal protein S15P K02956 RP-S15; small subunit ribosomal protein S15 D Dred_2055 SSU ribosomal protein S16P K02959 RP-S16; small subunit ribosomal protein S16 D Dred_0224 SSU ribosomal protein S17P K02961 RP-S17; small subunit ribosomal protein S17 D Dred_3306 SSU ribosomal protein S18P K02963 RP-S18; small subunit ribosomal protein S18 D Dred_0219 SSU ribosomal protein S19P K02965 RP-S19; small subunit ribosomal protein S19 D Dred_2505 SSU ribosomal protein S20P K02968 RP-S20; small subunit ribosomal protein S20 D Dred_2490 SSU ribosomal protein S21P K02970 RP-S21; small subunit ribosomal protein S21 D Dred_0204 LSU ribosomal protein L1P K02863 RP-L1; large subunit ribosomal protein L1 D Dred_0218 LSU ribosomal protein L2P K02886 RP-L2; large subunit ribosomal protein L2 D Dred_0215 LSU ribosomal protein L3P K02906 RP-L3; large subunit ribosomal protein L3 D Dred_0216 LSU ribosomal protein L4P K02926 RP-L4; large subunit ribosomal protein L4 D Dred_0227 LSU ribosomal protein L5P K02931 RP-L5; large subunit ribosomal protein L5 D Dred_0230 LSU ribosomal protein L6P K02933 RP-L6; large subunit ribosomal protein L6 D Dred_0206 LSU ribosomal protein L12P K02935 RP-L7; large subunit ribosomal protein L7/L12 D Dred_3303 LSU ribosomal protein L9P K02939 RP-L9; large subunit ribosomal protein L9 D Dred_0205 LSU ribosomal protein L10P K02864 RP-L10; large subunit ribosomal protein L10 D Dred_0203 LSU ribosomal protein L11P K02867 RP-L11; large subunit ribosomal protein L11 D Dred_0256 LSU ribosomal protein L13P K02871 RP-L13; large subunit ribosomal protein L13 D Dred_0225 LSU ribosomal protein L14P K02874 RP-L14; large subunit ribosomal protein L14 D Dred_0234 LSU ribosomal protein L15P K02876 RP-L15; large subunit ribosomal protein L15 D Dred_0222 LSU ribosomal protein L16P K02878 RP-L16; large subunit ribosomal protein L16 D Dred_0244 LSU ribosomal protein L17P K02879 RP-L17; large subunit ribosomal protein L17 D Dred_0231 LSU ribosomal protein L18P K02881 RP-L18; large subunit ribosomal protein L18 D Dred_2050 LSU ribosomal protein L19P K02884 RP-L19; large subunit ribosomal protein L19 D Dred_1615 LSU ribosomal protein L20P K02887 RP-L20; large subunit ribosomal protein L20 D Dred_2535 LSU ribosomal protein L21P K02888 RP-L21; large subunit ribosomal protein L21 D Dred_0220 LSU ribosomal protein L22P K02890 RP-L22; large subunit ribosomal protein L22 D Dred_0217 LSU ribosomal protein L23P K02892 RP-L23; large subunit ribosomal protein L23 D Dred_0226 LSU ribosomal protein L24P K02895 RP-L24; large subunit ribosomal protein L24 D Dred_0108 LSU ribosomal protein L25P K02897 RP-L25; large subunit ribosomal protein L25 D Dred_2534 LSU ribosomal protein L27P K02899 RP-L27; large subunit ribosomal protein L27 D Dred_2089 LSU ribosomal protein L28P K02902 RP-L28; large subunit ribosomal protein L28 D Dred_0223 LSU ribosomal protein L29P K02904 RP-L29; large subunit ribosomal protein L29 D Dred_0233 LSU ribosomal protein L30P K02907 RP-L30; large subunit ribosomal protein L30 D Dred_3172 LSU ribosomal protein L31P K02909 RP-L31; large subunit ribosomal protein L31 D Dred_2078 LSU ribosomal protein L32P K02911 RP-L32; large subunit ribosomal protein L32 D Dred_0200 LSU ribosomal protein L33P K02913 RP-L33; large subunit ribosomal protein L33 D Dred_3329 LSU ribosomal protein L34P K02914 RP-L34; large subunit ribosomal protein L34 D Dred_1614 LSU ribosomal protein L35P K02916 RP-L35; large subunit ribosomal protein L35 D Dred_0239 LSU ribosomal protein L36P K02919 RP-L36; large subunit ribosomal protein L36 D Dred_0209 LSU ribosomal protein L7AE K07590 RP-L7A; large subunit ribosomal protein L7A D Dred_R0014 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Dred_R0031 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Dred_R0078 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Dred_R0001 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Dred_R0094 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Dred_R0047 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Dred_R0050 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Dred_R0061 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Dred_R0032 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Dred_R0077 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Dred_R0051 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Dred_R0060 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Dred_R0048 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Dred_R0093 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Dred_R0004 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Dred_R0017 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Dred_R0005 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Dred_R0033 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Dred_R0049 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Dred_R0052 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Dred_R0092 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Dred_R0076 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Dred_R0018 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Dred_R0020 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Dred_R0027 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Dred_R0059 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:drm00970] D Dred_R0054 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Dred_R0003 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Dred_R0016 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Dred_R0010 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Dred_R0084 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Dred_R0008 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Dred_R0009 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Dred_R0086 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Dred_R0075 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Dred_R0019 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Dred_R0021 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Dred_R0035 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Dred_R0043 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Dred_R0091 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Dred_R0038 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D Dred_R0041 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D Dred_R0066 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Dred_R0081 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Dred_R0028 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Dred_R0064 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Dred_R0097 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Dred_R0073 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Dred_R0099 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Dred_R0037 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Dred_R0040 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Dred_R0042 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Dred_R0070 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Dred_R0085 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Dred_R0096 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Dred_R0082 tRNA-His K14226 tRNA-His; tRNA His D Dred_R0002 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Dred_R0015 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Dred_R0044 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Dred_R0079 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Dred_R0071 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Dred_R0055 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Dred_R0067 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Dred_R0068 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Dred_R0080 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Dred_R0100 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Dred_R0098 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Dred_R0029 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Dred_R0030 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Dred_R0026 tRNA-Met K14230 tRNA-Met; tRNA Met D Dred_R0024 tRNA-Met K14230 tRNA-Met; tRNA Met D Dred_R0034 tRNA-Met K14230 tRNA-Met; tRNA Met D Dred_R0083 tRNA-Met K14230 tRNA-Met; tRNA Met D Dred_R0074 tRNA-Met K14230 tRNA-Met; tRNA Met D Dred_R0036 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D Dred_R0039 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D Dred_R0063 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Dred_R0062 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Dred_R0045 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Dred_R0046 pseudogene K14232 tRNA-Pro; tRNA Pro D Dred_R0056 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Dred_R0006 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Dred_R0012 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Dred_R0011 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Dred_R0007 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Dred_R0025 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Dred_R0088 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Dred_R0022 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Dred_R0087 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Dred_R0058 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D Dred_R0023 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Dred_R0065 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Dred_R0072 tRNA-Val K14237 tRNA-Val; tRNA Val D Dred_R0090 tRNA-Val K14237 tRNA-Val; tRNA Val D Dred_R0089 tRNA-Val K14237 tRNA-Val; tRNA Val D Dred_R0057 tRNA-Val K14237 tRNA-Val; tRNA Val D Dred_R0069 tRNA-Sec K14238 tRNA-Sec; tRNA Sec D Dred_0191 glutamate--tRNA(Gln) ligase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24] D Dred_2341 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D Dred_2340 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D Dred_2342 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D Dred_0189 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D Dred_0769 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Dred_2333 phage tail protein I K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Dred_0757 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Dred_1281 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D Dred_2473 glycyl-tRNA synthetase alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D Dred_2472 glycyl-tRNA synthetase beta chain K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D Dred_1612 Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D Dred_0015 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D Dred_2186 L-seryl-tRNA(Sec) selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1] D Dred_0193 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D Dred_0065 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D Dred_1705 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D Dred_2554 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D Dred_2515 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Dred_0718 Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D Dred_0175 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D Dred_3183 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Dred_1967 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D Dred_0756 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D Dred_1619 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D Dred_1620 phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D Dred_1647 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Dred_1133 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:drm03060] D Dred_0235 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY D Dred_0201 protein translocase subunit secE/sec61 gamma K03073 secE; preprotein translocase subunit SecE D Dred_2986 protein translocase subunit secG K03075 secG; preprotein translocase subunit SecG D Dred_1669 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D Dred_1670 protein translocase subunit secF K03074 secF; preprotein translocase subunit SecF D Dred_1667 protein translocase subunit yajC K03210 yajC; preprotein translocase subunit YajC D Dred_3326 protein translocase subunit yidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D Dred_3078 protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Dred_2056 signal recognition particle subunit FFH/SRP54 (srp54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D Dred_R0013 ffs; SRP RNA; RNA component of signal recognition particle K01983 ffs; SRP RNA D Dred_2067 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Dred_1112 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA D Dred_1508 sec-independent translocation protein mttA/Hcf106 K03116 tatA; sec-independent protein translocase protein TatA D Dred_1118 Sec-independent protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC D Dred_2049 signal peptidase I, Serine peptidase, MEROPS family S26A K03100 lepB; signal peptidase I [EC:3.4.21.89] D Dred_1688 signal peptidase II, Aspartic peptidase, MEROPS family A08 K03101 lspA; signal peptidase II [EC:3.4.23.36] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:drm04122] D Dred_0764 aminotransferase, class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Dred_1001 aminotransferase, class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Dred_0766 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D Dred_2268 GTP cyclohydrolase subunit MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D Dred_2267 GTP cyclohydrolase subunit MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D Dred_0072 thiamine biosynthesis protein ThiS K03154 thiS; sulfur carrier protein D Dred_0075 thiamine biosynthesis protein ThiF K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73] C 03050 Proteasome C 03018 RNA degradation [PATH:drm03018] D Dred_2987 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Dred_0136 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Dred_1950 Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D Dred_1921 ATP-dependent RNA helicase DbpA K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D Dred_2292 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D Dred_0037 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D Dred_1261 ATP-dependent DNA helicase, RecQ-like protein K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D Dred_3174 transcription termination factor Rho K03628 rho; transcription termination factor Rho D Dred_1919 metal dependent phosphohydrolase K18682 rny; ribonucrease Y [EC:3.1.-.-] D Dred_1938 beta-lactamase domain protein K12574 rnj; ribonuclease J [EC:3.1.-.-] D Dred_1816 RNase J1 K12574 rnj; ribonuclease J [EC:3.1.-.-] D Dred_2313 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D Dred_2496 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Dred_3115 Heat shock protein 70 K04043 dnaK; molecular chaperone DnaK D Dred_2873 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Dred_1881 RNA-binding protein Hfq K03666 hfq; host factor-I protein D Dred_0158 metal dependent phosphohydrolase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] B B 09124 Replication and repair C 03030 DNA replication [PATH:drm03030] D Dred_2319 DNA polymerase III catalytic subunit, DnaE type K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Dred_1965 DNA polymerase III catalytic subunit, PolC type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D Dred_0042 DNA polymerase III, tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Dred_0060 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Dred_2506 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Dred_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Dred_3301 primary replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D Dred_2463 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D Dred_3307 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Dred_2617 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Dred_0980 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Dred_2456 RNase HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D Dred_2047 Ribonuclease H K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D Dred_0914 Ribonuclease H K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D Dred_1599 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Dred_2346 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:drm03410] D Dred_2331 DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D Dred_1635 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] D Dred_1598 DNA-(apurinic or apyrimidinic site) lyase / Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D Dred_3067 phage SPO1 DNA polymerase-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D Dred_1180 Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D Dred_0485 Endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D Dred_1599 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Dred_0731 exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Dred_2346 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:drm03420] D Dred_0111 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D Dred_3065 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A D Dred_3066 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B D Dred_3057 Excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C D Dred_2348 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Dred_1599 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Dred_2346 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03430 Mismatch repair [PATH:drm03430] D Dred_1887 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Dred_1638 DNA mismatch repair protein, MutS family K07456 mutS2; DNA mismatch repair protein MutS2 D Dred_1884 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Dred_2348 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Dred_1072 Exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D Dred_1075 Exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D Dred_0731 exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Dred_3307 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Dred_2617 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Dred_0980 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Dred_2319 DNA polymerase III catalytic subunit, DnaE type K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Dred_1965 DNA polymerase III catalytic subunit, PolC type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D Dred_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Dred_0042 DNA polymerase III, tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Dred_2506 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Dred_0060 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Dred_2346 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Dred_0878 D12 class N6 adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] C 03440 Homologous recombination [PATH:drm03440] D Dred_0731 exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Dred_3307 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Dred_2617 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Dred_0980 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Dred_0004 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF D Dred_2475 DNA replication and repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D Dred_0044 DNA replication and repair protein RecR K06187 recR; recombination protein RecR D Dred_1920 RecA protein K03553 recA; recombination protein RecA D Dred_1599 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Dred_1661 Holliday junction DNA helicase subunit RuvA K03550 ruvA; holliday junction DNA helicase RuvA D Dred_1662 Holliday junction DNA helicase subunit RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D Dred_1660 Holliday junction endonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D Dred_2088 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D Dred_2319 DNA polymerase III catalytic subunit, DnaE type K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Dred_1965 DNA polymerase III catalytic subunit, PolC type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D Dred_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Dred_0042 DNA polymerase III, tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Dred_2506 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Dred_0060 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Dred_1703 replication restart DNA helicase PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] C 03450 Non-homologous end-joining [PATH:drm03450] D Dred_2003 DNA end-binding protein Ku K10979 ku; DNA end-binding protein Ku D Dred_1986 DNA primase, small subunit K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus and Lyssavirus C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:drm02010] D Dred_2301 extracellular solute-binding protein, family 1 K05772 tupA; tungstate transport system substrate-binding protein D Dred_2270 binding-protein-dependent transport systems inner membrane component K05773 tupB; tungstate transport system permease protein D Dred_2269 carbohydrate ABC transporter ATP-binding protein, CUT1 family K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6] D Dred_1849 tungstate/molybdate binding protein K15495 wtpA; molybdate/tungstate transport system substrate-binding protein D Dred_1573 extracellular solute-binding protein, family 3 K15553 ssuA; sulfonate transport system substrate-binding protein D Dred_1575 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein D Dred_1574 ABC transporter related protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D Dred_1529 extracellular solute-binding protein, family 1 K02012 afuA; iron(III) transport system substrate-binding protein D Dred_1530 binding-protein-dependent transport systems inner membrane component K02011 afuB; iron(III) transport system permease protein D Dred_1531 ABC transporter related protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D Dred_0473 Substrate-binding region of ABC-type glycine betaine transport system K02002 proX; glycine betaine/proline transport system substrate-binding protein D Dred_3207 Substrate-binding region of ABC-type glycine betaine transport system K02002 proX; glycine betaine/proline transport system substrate-binding protein D Dred_3208 binding-protein-dependent transport systems inner membrane component K02001 proW; glycine betaine/proline transport system permease protein D Dred_3209 glycine betaine/L-proline ABC transporter, ATPase subunit K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D Dred_2177 nucleoside-binding protein K07335 bmpA; basic membrane protein A and related proteins D Dred_2769 nucleoside-binding protein K07335 bmpA; basic membrane protein A and related proteins D Dred_2175 nucleoside ABC transporter membrane protein K23535 nupB; general nucleoside transport system permease protein D Dred_2767 nucleoside ABC transporter membrane protein K23535 nupB; general nucleoside transport system permease protein D Dred_2766 nucleoside ABC transporter membrane protein K23536 nupC; general nucleoside transport system permease protein D Dred_2174 nucleoside ABC transporter membrane protein K23536 nupC; general nucleoside transport system permease protein D Dred_2176 nucleoside ABC transporter ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein D Dred_2768 nucleoside ABC transporter ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein D Dred_2522 ribose-binding protein K10439 rbsB; ribose transport system substrate-binding protein D Dred_2523 ribose ABC transporter membrane protein K10440 rbsC; ribose transport system permease protein D Dred_2524 monosaccharide ABC transporter ATP-binding protein, CUT2 family K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D Dred_2525 ribose transport protein RbsD K06726 rbsD; D-ribose pyranase [EC:5.4.99.62] D Dred_2106 phosphate ABC transporter substrate-binding protein, PhoT family K02040 pstS; phosphate transport system substrate-binding protein D Dred_2295 phosphate ABC transporter substrate-binding protein, PhoT family K02040 pstS; phosphate transport system substrate-binding protein D Dred_2105 phosphate ABC transporter membrane protein 1, PhoT family K02037 pstC; phosphate transport system permease protein D Dred_2296 phosphate ABC transporter membrane protein 1, PhoT family K02037 pstC; phosphate transport system permease protein D Dred_2104 phosphate ABC transporter membrane protein 2, PhoT family K02038 pstA; phosphate transport system permease protein D Dred_2297 phosphate ABC transporter membrane protein 2, PhoT family K02038 pstA; phosphate transport system permease protein D Dred_0709 phosphate ABC transporter ATP-binding protein, PhoT family K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D Dred_2298 phosphate ABC transporter ATP-binding protein, PhoT family K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D Dred_0727 amino acid ABC transporter substrate-binding protein, PAAT family K10036 glnH; glutamine transport system substrate-binding protein D Dred_0728 amino acid ABC transporter membrane protein, PAAT family K10037 glnP; glutamine transport system permease protein D Dred_0729 amino acid ABC transporter ATP-binding protein, PAAT family K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1] D Dred_2235 amino acid ABC transporter substrate-binding protein, PAAT family K17073 lysX1; putative lysine transport system substrate-binding protein D Dred_2234 amino acid ABC transporter membrane protein, PAAT family K17074 lysX2; putative lysine transport system permease protein D Dred_2233 amino acid ABC transporter ATP-binding protein, PAAT family K17076 lysY; putative lysine transport system ATP-binding protein D Dred_2240 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein D Dred_2935 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein D Dred_1720 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein D Dred_2239 amino acid/amide ABC transporter membrane protein 1, HAAT family K01997 livH; branched-chain amino acid transport system permease protein D Dred_2934 amino acid/amide ABC transporter membrane protein 1, HAAT family K01997 livH; branched-chain amino acid transport system permease protein D Dred_1721 amino acid/amide ABC transporter membrane protein 1, HAAT family K01997 livH; branched-chain amino acid transport system permease protein D Dred_2238 amino acid/amide ABC transporter membrane protein 2, HAAT family K01998 livM; branched-chain amino acid transport system permease protein D Dred_2933 amino acid/amide ABC transporter membrane protein 2, HAAT family K01998 livM; branched-chain amino acid transport system permease protein D Dred_1722 amino acid/amide ABC transporter membrane protein 2, HAAT family K01998 livM; branched-chain amino acid transport system permease protein D Dred_2237 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family K01995 livG; branched-chain amino acid transport system ATP-binding protein D Dred_2932 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family K01995 livG; branched-chain amino acid transport system ATP-binding protein D Dred_1723 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family K01995 livG; branched-chain amino acid transport system ATP-binding protein D Dred_1724 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family K01996 livF; branched-chain amino acid transport system ATP-binding protein D Dred_2236 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family K01996 livF; branched-chain amino acid transport system ATP-binding protein D Dred_2931 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family K01996 livF; branched-chain amino acid transport system ATP-binding protein D Dred_2654 NLPA lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein D Dred_2653 binding-protein-dependent transport systems inner membrane component K02072 metI; D-methionine transport system permease protein D Dred_2652 ABC transporter related protein K02071 metN; D-methionine transport system ATP-binding protein D Dred_2645 periplasmic solute binding protein K09815 znuA; zinc transport system substrate-binding protein D Dred_2647 ABC-3 protein K09816 znuB; zinc transport system permease protein D Dred_2646 ABC transporter related protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D Dred_2732 Cobalt transport protein CbiN K02009 cbiN; cobalt/nickel transport protein D Dred_2566 hypothetical protein K02009 cbiN; cobalt/nickel transport protein D Dred_2567 cobalamin (vitamin B12) biosynthesis CbiM protein K02007 cbiM; cobalt/nickel transport system permease protein D Dred_2731 cobalamin biosynthesis protein CbiM K02007 cbiM; cobalt/nickel transport system permease protein D Dred_2565 cobalt ABC transporter, inner membrane subunit CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein D Dred_2733 cobalt ABC transporter, inner membrane subunit CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein D Dred_2564 cobalt ABC transporter, ATPase subunit K02006 cbiO; cobalt/nickel transport system ATP-binding protein D Dred_2734 cobalt ABC transporter, ATPase subunit K02006 cbiO; cobalt/nickel transport system ATP-binding protein D Dred_0169 BioY protein K03523 bioY; biotin transport system substrate-specific component D Dred_0247 cobalt transport protein K16785 ecfT; energy-coupling factor transport system permease protein D Dred_2677 cobalt transport protein K16785 ecfT; energy-coupling factor transport system permease protein D Dred_0245 ABC transporter related protein K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D Dred_0246 ABC transporter related protein K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D Dred_3132 ABC-2 type transporter K09690 wzm; homopolymeric O-antigen transport system permease protein D Dred_3131 ABC transporter related protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14] D Dred_3072 cell division protein FtsX K09811 ftsX; cell division transport system permease protein D Dred_3073 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D Dred_3241 hypothetical protein K16919 ytrC_D; acetoin utilization transport system permease protein D Dred_3242 ABC transporter related protein K16921 ytrB; acetoin utilization transport system ATP-binding protein D Dred_1642 ABC transporter, transmembrane region, type 1 K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC D Dred_1641 ABC transporter, transmembrane region, type 1 K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD C 02060 Phosphotransferase system (PTS) [PATH:drm02060] D Dred_0330 phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D Dred_0331 Phosphotransferase system, phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr D Dred_3055 Phosphotransferase system, phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr D Dred_0332 PTS system D-glucosamine-specific IIB component, Glc family / PTS system D-glucosamine-specific IIC component, Glc family / PTS system D-glucosamine-specific IIA component, Glc family K20118 ptsG; glucose PTS system EIICBA or EIICB component [EC:2.7.1.199] C 03070 Bacterial secretion system [PATH:drm03070] D Dred_3141 hypothetical protein K12340 tolC; outer membrane protein D Dred_1024 hypothetical protein K02456 gspG; general secretion pathway protein G D Dred_0951 peptidase A24A, prepilin type IV K02464 gspO; general secretion pathway protein O [EC:3.4.23.43 2.1.1.-] D Dred_1669 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D Dred_1670 protein translocase subunit secF K03074 secF; preprotein translocase subunit SecF D Dred_0201 protein translocase subunit secE/sec61 gamma K03073 secE; preprotein translocase subunit SecE D Dred_2986 protein translocase subunit secG K03075 secG; preprotein translocase subunit SecG D Dred_0235 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY D Dred_1667 protein translocase subunit yajC K03210 yajC; preprotein translocase subunit YajC D Dred_3326 protein translocase subunit yidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D Dred_3078 protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Dred_2067 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Dred_2056 signal recognition particle subunit FFH/SRP54 (srp54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D Dred_1112 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA D Dred_1508 sec-independent translocation protein mttA/Hcf106 K03116 tatA; sec-independent protein translocase protein TatA D Dred_1118 Sec-independent protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC D Dred_0843 TRAG family protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8] D Dred_0976 TRAG family protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8] B B 09132 Signal transduction C 02020 Two-component system [PATH:drm02020] D Dred_0708 PAS/PAC sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D Dred_0707 two component transcriptional regulator, winged helix family K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP D Dred_2641 two component transcriptional regulator, winged helix family K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP D Dred_2106 phosphate ABC transporter substrate-binding protein, PhoT family K02040 pstS; phosphate transport system substrate-binding protein D Dred_2295 phosphate ABC transporter substrate-binding protein, PhoT family K02040 pstS; phosphate transport system substrate-binding protein D Dred_0641 peptidase S1 and S6, chymotrypsin/Hap K04771 degP; serine protease Do [EC:3.4.21.107] D Dred_0467 peptidase S1 and S6, chymotrypsin/Hap K04771 degP; serine protease Do [EC:3.4.21.107] D Dred_0758 peptidase S1 and S6, chymotrypsin/Hap K04771 degP; serine protease Do [EC:3.4.21.107] D Dred_2429 flagellin domain protein K02406 fliC; flagellin D Dred_2433 flagellin domain protein K02406 fliC; flagellin D Dred_2388 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA D Dred_0355 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Dred_2443 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Dred_1842 histidine kinase K07651 resE; two-component system, OmpR family, sensor histidine kinase ResE [EC:2.7.13.3] D Dred_1903 two component transcriptional regulator, winged helix family K07775 resD; two-component system, OmpR family, response regulator ResD D Dred_2120 putative methyl-accepting chemotaxis sensory transducer K07652 vicK; two-component system, OmpR family, sensor histidine kinase VicK [EC:2.7.13.3] D Dred_0001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D Dred_1745 signal transduction histidine kinase, nitrogen specific, NtrB K07698 kinC; two-component system, sporulation sensor kinase C [EC:2.7.13.3] D Dred_3094 histidine kinase K07698 kinC; two-component system, sporulation sensor kinase C [EC:2.7.13.3] D Dred_1525 PAS/PAC sensor signal transduction histidine kinase K13533 kinE; two-component system, sporulation sensor kinase E [EC:2.7.13.3] D Dred_2293 GAF sensor signal transduction histidine kinase K13533 kinE; two-component system, sporulation sensor kinase E [EC:2.7.13.3] D Dred_2304 multi-sensor signal transduction histidine kinase K13533 kinE; two-component system, sporulation sensor kinase E [EC:2.7.13.3] D Dred_3178 response regulator receiver protein K02490 spo0F; two-component system, response regulator, stage 0 sporulation protein F D Dred_2891 response regulator receiver protein K02490 spo0F; two-component system, response regulator, stage 0 sporulation protein F D Dred_1086 response regulator receiver protein K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A D Dred_2955 Malate dehydrogenase (oxaloacetate-decarboxylating) K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D Dred_2958 signal transduction histidine kinase, LytS K07704 lytS; two-component system, LytTR family, sensor histidine kinase LytS [EC:2.7.13.3] D Dred_2957 response regulator receiver protein K07705 lytT; two-component system, LytTR family, response regulator LytT D Dred_0909 Accessory gene regulator B K07813 agrB; accessory gene regulator B D Dred_2417 carbon storage regulator, CsrA K03563 csrA; carbon storage regulator D Dred_2430 carbon storage regulator, CsrA K03563 csrA; carbon storage regulator D Dred_2107 histidine kinase K07777 degS; two-component system, NarL family, sensor histidine kinase DegS [EC:2.7.13.3] D Dred_2303 response regulator receiver protein K11624 ydfI; two-component system, NarL family, response regulator YdfI D Dred_2110 Flp/Fap pilin component K02651 flp; pilus assembly protein Flp/PilA D Dred_2114 SAF domain protein K02279 cpaB; pilus assembly protein CpaB D Dred_0824 SAF domain protein K02279 cpaB; pilus assembly protein CpaB D Dred_0953 hypothetical protein K02279 cpaB; pilus assembly protein CpaB D Dred_2115 response regulator receiver protein K02282 cpaE; pilus assembly protein CpaE D Dred_2116 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D Dred_0825 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D Dred_0944 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D Dred_0954 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D Dred_0803 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D Dred_2117 type II secretion system protein K12510 tadB; tight adherence protein B D Dred_2118 type II secretion system protein K12511 tadC; tight adherence protein C D Dred_2863 nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1 D Dred_2861 nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1 D Dred_2806 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Dred_2807 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Dred_2810 Glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Dred_1311 PAS/PAC sensor signal transduction histidine kinase K07710 atoS; two-component system, NtrC family, sensor histidine kinase AtoS [EC:2.7.13.3] D Dred_1312 two component, sigma54 specific, transcriptional regulator, Fis family K07714 atoC; two-component system, NtrC family, response regulator AtoC D Dred_2001 two component, sigma54 specific, transcriptional regulator, Fis family K07714 atoC; two-component system, NtrC family, response regulator AtoC D Dred_1491 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dred_1784 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dred_1892 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dred_0400 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dred_2992 RNA polymerase, sigma 54 subunit, RpoN/SigL K03092 rpoN; RNA polymerase sigma-54 factor D Dred_1042 hypothetical protein K02650 pilA; type IV pilus assembly protein PilA D Dred_1268 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D Dred_2384 Protein-glutamate O-methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D Dred_1181 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dred_0384 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dred_0620 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dred_1534 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dred_1693 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dred_2857 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dred_1557 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dred_2263 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dred_2461 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dred_2737 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dred_2760 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dred_2636 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dred_2154 putative CheW protein K03408 cheW; purine-binding chemotaxis protein CheW D Dred_2441 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW D Dred_1267 integral membrane sensor hybrid histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Dred_2440 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Dred_2382 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Dred_2439 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D Dred_0408 Tripartite ATP-independent periplasmic transporter, DctQ component K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit D Dred_0698 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Dred_1262 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Dred_3262 two component transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN D Dred_1639 cytochrome bd quinol oxidase subunit 1 apoprotein K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D Dred_1640 cytochrome bd quinol oxidase subunit 2 apoprotein K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D Dred_3141 hypothetical protein K12340 tolC; outer membrane protein D Dred_3159 UDP-N-Acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D Dred_2438 putative anti-sigma-28 factor, FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:drm02024] D Dred_1881 RNA-binding protein Hfq K03666 hfq; host factor-I protein D Dred_0248 anthranilate synthase, component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D Dred_0249 anthranilate synthase, component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D Dred_2240 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein D Dred_2935 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein D Dred_1720 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein D Dred_2239 amino acid/amide ABC transporter membrane protein 1, HAAT family K01997 livH; branched-chain amino acid transport system permease protein D Dred_2934 amino acid/amide ABC transporter membrane protein 1, HAAT family K01997 livH; branched-chain amino acid transport system permease protein D Dred_1721 amino acid/amide ABC transporter membrane protein 1, HAAT family K01997 livH; branched-chain amino acid transport system permease protein D Dred_2238 amino acid/amide ABC transporter membrane protein 2, HAAT family K01998 livM; branched-chain amino acid transport system permease protein D Dred_2933 amino acid/amide ABC transporter membrane protein 2, HAAT family K01998 livM; branched-chain amino acid transport system permease protein D Dred_1722 amino acid/amide ABC transporter membrane protein 2, HAAT family K01998 livM; branched-chain amino acid transport system permease protein D Dred_2237 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family K01995 livG; branched-chain amino acid transport system ATP-binding protein D Dred_2932 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family K01995 livG; branched-chain amino acid transport system ATP-binding protein D Dred_1723 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family K01995 livG; branched-chain amino acid transport system ATP-binding protein D Dred_1724 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family K01996 livF; branched-chain amino acid transport system ATP-binding protein D Dred_2236 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family K01996 livF; branched-chain amino acid transport system ATP-binding protein D Dred_2931 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family K01996 livF; branched-chain amino acid transport system ATP-binding protein D Dred_2963 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Dred_0698 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Dred_1262 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Dred_2093 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D Dred_0091 protein of unknown function DUF606 K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein D Dred_0909 Accessory gene regulator B K07813 agrB; accessory gene regulator B D Dred_1562 extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Dred_2454 extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Dred_0484 extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Dred_0389 extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Dred_1563 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D Dred_0390 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D Dred_2453 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D Dred_0391 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Dred_1564 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Dred_2452 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Dred_1565 oligopeptide/dipeptide ABC transporter, ATPase subunit K02031 ddpD; peptide/nickel transport system ATP-binding protein D Dred_2451 oligopeptide/dipeptide ABC transporter, ATPase subunit K02031 ddpD; peptide/nickel transport system ATP-binding protein D Dred_0392 oligopeptide/dipeptide ABC transporter, ATPase subunit K02031 ddpD; peptide/nickel transport system ATP-binding protein D Dred_1566 oligopeptide/dipeptide ABC transporter, ATPase subunit K02032 ddpF; peptide/nickel transport system ATP-binding protein D Dred_2450 oligopeptide/dipeptide ABC transporter, ATPase subunit K02032 ddpF; peptide/nickel transport system ATP-binding protein D Dred_0393 oligopeptide/dipeptide ABC transporter, ATPase subunit K02032 ddpF; peptide/nickel transport system ATP-binding protein D Dred_3326 protein translocase subunit yidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D Dred_0201 protein translocase subunit secE/sec61 gamma K03073 secE; preprotein translocase subunit SecE D Dred_2986 protein translocase subunit secG K03075 secG; preprotein translocase subunit SecG D Dred_0235 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY D Dred_1667 protein translocase subunit yajC K03210 yajC; preprotein translocase subunit YajC D Dred_3078 protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Dred_2067 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Dred_2056 signal recognition particle subunit FFH/SRP54 (srp54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D Dred_3178 response regulator receiver protein K02490 spo0F; two-component system, response regulator, stage 0 sporulation protein F D Dred_2891 response regulator receiver protein K02490 spo0F; two-component system, response regulator, stage 0 sporulation protein F D Dred_1086 response regulator receiver protein K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A D Dred_2741 phospholipase C zinc-binding protein K01114 plc; phospholipase C [EC:3.1.4.3] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis [PATH:drm02030] D Dred_1181 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dred_0384 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dred_0620 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dred_1534 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dred_1693 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dred_2857 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dred_1557 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dred_2263 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dred_2461 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dred_2737 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dred_2760 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dred_2636 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dred_2522 ribose-binding protein K10439 rbsB; ribose transport system substrate-binding protein D Dred_1267 integral membrane sensor hybrid histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Dred_2440 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Dred_2154 putative CheW protein K03408 cheW; purine-binding chemotaxis protein CheW D Dred_2441 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW D Dred_2382 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Dred_2383 CheC, inhibitor of MCP methylation K03410 cheC; chemotaxis protein CheC D Dred_1476 CheX protein (uncharacterized ORF in chemotaxis operon) K03409 cheX; chemotaxis protein CheX D Dred_2439 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D Dred_2385 CheD K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44] D Dred_1268 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D Dred_2384 Protein-glutamate O-methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D Dred_2407 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D Dred_2381 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D Dred_2398 surface presentation of antigens (SPOA) protein K02417 fliN; flagellar motor switch protein FliN D Dred_2380 CheC, inhibitor of MCP methylation K02417 fliN; flagellar motor switch protein FliN D Dred_1087 CheC, inhibitor of MCP methylation K02417 fliN; flagellar motor switch protein FliN D Dred_0355 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Dred_2443 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Dred_0354 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Dred_2442 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB C 02040 Flagellar assembly [PATH:drm02040] D Dred_2409 flagellar hook-basal body complex subunit FliE K02408 fliE; flagellar hook-basal body complex protein FliE D Dred_2408 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D Dred_2407 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D Dred_2406 Flagellar biosynthesis/type III secretory pathway protein-like protein K02411 fliH; flagellar assembly protein FliH D Dred_2405 type III secretion system ATPase, FliI/YscN K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D Dred_2404 flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ D Dred_2403 flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK D Dred_2399 flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL D Dred_2381 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D Dred_2398 surface presentation of antigens (SPOA) protein K02417 fliN; flagellar motor switch protein FliN D Dred_2380 CheC, inhibitor of MCP methylation K02417 fliN; flagellar motor switch protein FliN D Dred_1087 CheC, inhibitor of MCP methylation K02417 fliN; flagellar motor switch protein FliN D Dred_2397 hypothetical protein K02418 fliO; flagellar protein FliO/FliZ D Dred_2396 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D Dred_2395 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D Dred_2394 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D Dred_2392 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D Dred_2393 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D Dred_2411 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D Dred_2410 flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D Dred_2402 flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD D Dred_2400 protein of unknown function DUF1078 domain protein K02390 flgE; flagellar hook protein FlgE D Dred_2387 protein of unknown function DUF1078 domain protein K02391 flgF; flagellar basal-body rod protein FlgF D Dred_2386 protein of unknown function DUF1078 domain protein K02392 flgG; flagellar basal-body rod protein FlgG D Dred_2436 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D Dred_2435 flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL D Dred_2429 flagellin domain protein K02406 fliC; flagellin D Dred_2433 flagellin domain protein K02406 fliC; flagellin D Dred_2418 flagellar hook-associated 2 domain protein K02407 fliD; flagellar hook-associated protein 2 D Dred_2415 flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS D Dred_0355 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Dred_2443 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Dred_0354 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Dred_2442 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Dred_2438 putative anti-sigma-28 factor, FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM D Dred_2462 RNA polymerase, sigma 70 subunit, RpoD K03086 rpoD; RNA polymerase primary sigma factor D Dred_2992 RNA polymerase, sigma 54 subunit, RpoN/SigL K03092 rpoN; RNA polymerase sigma-54 factor D Dred_2388 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D Dred_2987 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Dred_0136 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism [PATH:drm04980] D Dred_1770 LAO/AO transport system ATPase K07588 MMAA; GTPase [EC:3.6.5.-] D Dred_2207 methionine synthase (B12-dependent) K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance [PATH:drm01501] D Dred_2954 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Dred_3141 hypothetical protein K12340 tolC; outer membrane protein D Dred_1646 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Dred_1803 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Dred_2545 peptidoglycan glycosyltransferase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D Dred_0902 Peptidoglycan glycosyltransferase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] C 01502 Vancomycin resistance [PATH:drm01502] D Dred_1796 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Dred_2865 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D Dred_0671 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D Dred_0672 Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D Dred_0675 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:drm01503] D Dred_1578 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Dred_0265 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Dred_2693 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Dred_2281 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Dred_1228 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Dred_0618 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Dred_2576 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Dred_2589 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Dred_0641 peptidase S1 and S6, chymotrypsin/Hap K04771 degP; serine protease Do [EC:3.4.21.107] D Dred_0467 peptidase S1 and S6, chymotrypsin/Hap K04771 degP; serine protease Do [EC:3.4.21.107] D Dred_0758 peptidase S1 and S6, chymotrypsin/Hap K04771 degP; serine protease Do [EC:3.4.21.107] D Dred_2954 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Dred_3141 hypothetical protein K12340 tolC; outer membrane protein B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:drm01000] C 01001 Protein kinases [BR:drm01001] D Dred_1714 serine/threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D Dred_0786 protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D Dred_3000 capsular exopolysaccharide family K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3] D Dred_0708 PAS/PAC sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D Dred_1842 histidine kinase K07651 resE; two-component system, OmpR family, sensor histidine kinase ResE [EC:2.7.13.3] D Dred_2120 putative methyl-accepting chemotaxis sensory transducer K07652 vicK; two-component system, OmpR family, sensor histidine kinase VicK [EC:2.7.13.3] D Dred_0324 integral membrane sensor signal transduction histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D Dred_0760 integral membrane sensor signal transduction histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D Dred_2107 histidine kinase K07777 degS; two-component system, NarL family, sensor histidine kinase DegS [EC:2.7.13.3] D Dred_1745 signal transduction histidine kinase, nitrogen specific, NtrB K07698 kinC; two-component system, sporulation sensor kinase C [EC:2.7.13.3] D Dred_3094 histidine kinase K07698 kinC; two-component system, sporulation sensor kinase C [EC:2.7.13.3] D Dred_1525 PAS/PAC sensor signal transduction histidine kinase K13533 kinE; two-component system, sporulation sensor kinase E [EC:2.7.13.3] D Dred_2293 GAF sensor signal transduction histidine kinase K13533 kinE; two-component system, sporulation sensor kinase E [EC:2.7.13.3] D Dred_2304 multi-sensor signal transduction histidine kinase K13533 kinE; two-component system, sporulation sensor kinase E [EC:2.7.13.3] D Dred_2958 signal transduction histidine kinase, LytS K07704 lytS; two-component system, LytTR family, sensor histidine kinase LytS [EC:2.7.13.3] D Dred_1311 PAS/PAC sensor signal transduction histidine kinase K07710 atoS; two-component system, NtrC family, sensor histidine kinase AtoS [EC:2.7.13.3] D Dred_1500 GAF sensor signal transduction histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3] D Dred_2275 GAF sensor signal transduction histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3] D Dred_1511 integral membrane sensor signal transduction histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3] D Dred_1267 integral membrane sensor hybrid histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Dred_2440 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Dred_1292 signal transduction histidine kinase K00936 pdtaS; two-component system, sensor histidine kinase PdtaS [EC:2.7.13.3] C 01009 Protein phosphatases and associated proteins [BR:drm01009] D Dred_2063 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D Dred_2313 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D Dred_1711 protein phosphatase 2C domain protein K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16] C 01002 Peptidases and inhibitors [BR:drm01002] D Dred_1688 signal peptidase II, Aspartic peptidase, MEROPS family A08 K03101 lspA; signal peptidase II [EC:3.4.23.36] D Dred_1047 type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D Dred_0951 peptidase A24A, prepilin type IV K02464 gspO; general secretion pathway protein O [EC:3.4.23.43 2.1.1.-] D Dred_2111 peptidase A24A, prepilin type IV K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D Dred_2086 spore protease K06012 gpr; spore protease [EC:3.4.24.78] D Dred_0685 sporulation factor SpoIIGA, Unknown type peptidase, MEROPS family U04 K06383 spoIIGA; stage II sporulation protein GA (sporulation sigma-E factor processing peptidase) [EC:3.4.23.-] D Dred_2375 GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D Dred_2893 peptidase C26 K07010 K07010; putative glutamine amidotransferase D Dred_2321 NLP/P60 protein K20742 ykfC; gamma-D-glutamyl-L-lysine dipeptidyl-peptidase [EC:3.4.14.13] D Dred_2365 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D Dred_2805 glutamate synthase (NADH) large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D Dred_0295 glutamine--fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D Dred_2812 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D Dred_0909 Accessory gene regulator B K07813 agrB; accessory gene regulator B D Dred_1487 ErfK/YbiS/YcfS/YnhG family protein K19234 ynhG; L,D-transpeptidase YnhG D Dred_2327 Abortive infection protein K07052 K07052; CAAX protease family protein D Dred_2457 oligopeptidase F, Metallo peptidase, MEROPS family M03B K08602 pepF; oligoendopeptidase F [EC:3.4.24.-] D Dred_1915 dipeptidase, Metallo peptidase, MEROPS family M19 K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D Dred_1092 peptidase T-like protein K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4] D Dred_0798 peptidase M23B K21472 lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-] D Dred_1592 methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D Dred_0236 methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D Dred_1765 creatinase K01271 pepQ; Xaa-Pro dipeptidase [EC:3.4.13.9] D Dred_1051 peptidase M24 K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D Dred_3214 putative aminopeptidase K19689 ampS; aminopeptidase [EC:3.4.11.-] D Dred_0396 conserved hypothetical protein K19689 ampS; aminopeptidase [EC:3.4.11.-] D Dred_0126 membrane protease FtsH catalytic subunit K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D Dred_1923 Vesicle-fusing ATPase K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D Dred_0421 Heat shock protein, Metallo peptidase, MEROPS family M48B K03799 htpX; heat shock protein HtpX [EC:3.4.24.-] D Dred_1274 Heat shock protein, Metallo peptidase, MEROPS family M48B K03799 htpX; heat shock protein HtpX [EC:3.4.24.-] D Dred_2539 peptidase M50 K06402 spoIVFB; stage IV sporulation protein FB [EC:3.4.24.-] D Dred_1969 site-2 protease, Metallo peptidase, MEROPS family M50B K11749 rseP; regulator of sigma E protease [EC:3.4.24.-] D Dred_0641 peptidase S1 and S6, chymotrypsin/Hap K04771 degP; serine protease Do [EC:3.4.21.107] D Dred_0467 peptidase S1 and S6, chymotrypsin/Hap K04771 degP; serine protease Do [EC:3.4.21.107] D Dred_0758 peptidase S1 and S6, chymotrypsin/Hap K04771 degP; serine protease Do [EC:3.4.21.107] D Dred_0649 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D Dred_2952 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D Dred_1102 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D Dred_1234 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D Dred_1606 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D Dred_2562 ATP-dependent Clp protease proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D Dred_1205 peptidase S14, ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D Dred_2559 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D Dred_3302 Endopeptidase La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D Dred_2560 AAA ATPase, central domain protein K04076 lonB; ATP-dependent Lon protease [EC:3.4.21.53] D Dred_1873 SOS-response transcriptional repressor, LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D Dred_1183 putative prophage repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D Dred_2624 putative prophage repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D Dred_2049 signal peptidase I, Serine peptidase, MEROPS family S26A K03100 lepB; signal peptidase I [EC:3.4.21.89] D Dred_1600 carboxyl-terminal protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D Dred_3070 C-terminal processing peptidase-3, Serine peptidase, MEROPS family S41A K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D Dred_3180 signal peptide peptidase A, Serine peptidase, MEROPS family S49 K04773 sppA; protease IV [EC:3.4.21.-] D Dred_2900 Rhomboid family protein K07059 K07059; rhomboid family protein D Dred_1085 SpoIVB peptidase, Serine peptidase, MEROPS family S55 K06399 spoIVB; stage IV sporulation protein B [EC:3.4.21.116] D Dred_1981 ATP dependent peptidase CodWX, CodW component, Threonine peptidase, MEROPS family T01B K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2] D Dred_1637 peptidase U32 K08303 prtC; U32 family peptidase [EC:3.4.-.-] D Dred_0901 peptidase U32 K08303 prtC; U32 family peptidase [EC:3.4.-.-] D Dred_1049 peptidase U62, modulator of DNA gyrase K03592 pmbA; PmbA protein D Dred_1032 microcin-processing peptidase 2, Unknown type peptidase, MEROPS family U62 K03568 tldD; TldD protein C 01003 Glycosyltransferases [BR:drm01003] D Dred_1800 1,2-diacylglycerol 3-glucosyltransferase K19002 mgs; 1,2-diacylglycerol 3-alpha-glucosyltransferase [EC:2.4.1.337] D Dred_1966 Monogalactosyldiacylglycerol synthase K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315] D Dred_1457 glycogen synthase (ADP-glucose) K00703 glgA; starch synthase [EC:2.4.1.21] D Dred_1646 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Dred_1803 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Dred_2100 penicillin-binding protein, 1A family K21464 pbpG; penicillin-binding protein 2D [EC:2.4.99.28 3.4.16.4] D Dred_3113 N-acetylmannosaminyltransferase K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187] D Dred_3102 glycosyl transferase, family 4 K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D Dred_1899 hypothetical protein K14337 mptA; alpha-1,6-mannosyltransferase [EC:2.4.1.-] D Dred_1593 glycosyl transferase, family 2 K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-] C 01005 Lipopolysaccharide biosynthesis proteins [BR:drm01005] D Dred_3102 glycosyl transferase, family 4 K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:drm01011] D Dred_3148 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Dred_0678 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Dred_3294 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D Dred_0677 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D Dred_0676 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D Dred_0673 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D Dred_0670 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D Dred_1796 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D Dred_2865 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D Dred_1240 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D Dred_0672 Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D Dred_0675 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D Dred_0427 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D Dred_3098 integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase D Dred_1646 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Dred_1803 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D Dred_2100 penicillin-binding protein, 1A family K21464 pbpG; penicillin-binding protein 2D [EC:2.4.99.28 3.4.16.4] D Dred_2545 peptidoglycan glycosyltransferase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D Dred_0902 Peptidoglycan glycosyltransferase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D Dred_0669 stage V sporulation protein D K08384 spoVD; stage V sporulation protein D (sporulation-specific penicillin-binding protein) D Dred_1713 cell elongation-specific peptidoglycan D,D-transpeptidase K05364 pbpA; penicillin-binding protein A D Dred_0649 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D Dred_2952 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D Dred_1102 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D Dred_1234 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D Dred_1606 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D Dred_1487 ErfK/YbiS/YcfS/YnhG family protein K19234 ynhG; L,D-transpeptidase YnhG D Dred_0798 peptidase M23B K21472 lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-] D Dred_1595 Lytic transglycosylase, catalytic K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D Dred_0900 aminodeoxychorismate lyase K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29] D Dred_1949 cell wall hydrolase, SleB K27245 sleB; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D Dred_2798 cell wall hydrolase, SleB K27245 sleB; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D Dred_3195 cell wall hydrolase, SleB K27245 sleB; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D Dred_0117 SpoIID/LytB domain protein K06381 spoIID; stage II sporulation protein D (peptidoglycan lytic transglycosylase) [EC:4.2.2.29] D Dred_3147 SpoIID/LytB domain protein K06381 spoIID; stage II sporulation protein D (peptidoglycan lytic transglycosylase) [EC:4.2.2.29] D Dred_1578 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Dred_0265 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Dred_2693 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Dred_2281 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Dred_1228 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Dred_0618 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Dred_2576 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Dred_2589 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] C 01004 Lipid biosynthesis proteins [BR:drm01004] D Dred_2073 [Acyl-carrier-protein] S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D Dred_2075 3-oxoacyl-[acyl-carrier-protein] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D Dred_2070 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D Dred_2072 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D Dred_3103 3-hydroxyacyl-[acyl-carrier-protein] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D Dred_2074 2-nitropropane dioxygenase, NPD K02371 fabK; enoyl-[acyl-carrier protein] reductase II [EC:1.3.1.9] D Dred_2081 CoA-binding domain protein K24012 acdAB; acetate---CoA ligase (ADP-forming) [EC:6.2.1.13] D Dred_2963 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Dred_2076 phosphate:acyl-[acyl carrier protein] acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D Dred_1161 acyl-phosphate glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D Dred_1153 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins [BR:drm01008] D Dred_1257 FMN-dependent alpha-hydroxy acid dehydrogenase K16422 hmo; 4-hydroxymandelate oxidase [EC:1.1.3.46] C 01006 Prenyltransferases [BR:drm01006] D Dred_1076 farnesyl-diphosphate synthase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] D Dred_2166 Trans-hexaprenyltranstransferase K24873 hepT; heptaprenyl diphosphate synthase component 2 [EC:2.5.1.30] D Dred_2199 conserved hypothetical protein K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D Dred_1973 Undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D Dred_1450 Di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D Dred_1882 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D Dred_2781 1,4-dihydroxy-2-naphtoate prenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74] D Dred_2196 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] C 01007 Amino acid related enzymes [BR:drm01007] D Dred_0189 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D Dred_0191 glutamate--tRNA(Gln) ligase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24] D Dred_1647 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Dred_1133 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D Dred_0193 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D Dred_3183 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Dred_0065 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D Dred_0718 Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D Dred_2554 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D Dred_2515 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Dred_0175 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D Dred_0757 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Dred_1281 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D Dred_0756 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D Dred_2473 glycyl-tRNA synthetase alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D Dred_2472 glycyl-tRNA synthetase beta chain K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D Dred_0015 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D Dred_1967 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D Dred_1612 Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D Dred_0769 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Dred_2333 phage tail protein I K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Dred_1619 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D Dred_1620 phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D Dred_1696 L-aspartate aminotransferase apoenzyme K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D Dred_1148 aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1] D Dred_1695 LL-diaminopimelate aminotransferase apoenzyme K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83] D Dred_1913 LL-diaminopimelate aminotransferase apoenzyme K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83] D Dred_3192 aminotransferase K10907 K10907; aminotransferase [EC:2.6.1.-] D Dred_2354 histidinol phosphate aminotransferase apoenzyme K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D Dred_0274 acetylornithine aminotransferase apoenzyme K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D Dred_2058 aminotransferase K09251 patA; putrescine aminotransferase [EC:2.6.1.82] D Dred_2156 glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] D Dred_2144 branched chain amino acid aminotransferase apoenzyme K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D Dred_3134 DegT/DnrJ/EryC1/StrS aminotransferase K13010 per; perosamine synthetase [EC:2.6.1.102] D Dred_2412 DegT/DnrJ/EryC1/StrS aminotransferase K13010 per; perosamine synthetase [EC:2.6.1.102] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins [BR:drm00194] D Dred_3149 ATP synthase F1 subcomplex epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D Dred_3150 ATP synthase F1 subcomplex beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D Dred_3151 ATP synthase F1 subcomplex gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D Dred_3152 ATP synthase F1 subcomplex alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D Dred_3153 ATP synthase F1 subcomplex delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D Dred_3154 ATP synthase F0 subcomplex B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b D Dred_3155 ATP synthase F0 subcomplex C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c D Dred_3156 ATP synthase F0 subcomplex A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D Dred_3158 hypothetical protein K02116 atpI; ATP synthase protein I B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:drm03000] D Dred_2282 transcriptional regulator, LysR family K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator D Dred_1443 transcriptional regulator K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon D Dred_0131 transcriptional regulator, DeoR family K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor D Dred_3145 regulatory protein, DeoR K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D D Dred_2471 putative signal-transduction protein with CBS domains K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator D Dred_2751 transcriptional regulator, GntR family K03710 K03710; GntR family transcriptional regulator D Dred_2758 transcriptional regulator, GntR family K03710 K03710; GntR family transcriptional regulator D Dred_2188 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D Dred_2187 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D Dred_3243 transcriptional regulator, GntR family K07979 ytrA; GntR family transcriptional regulator D Dred_2778 transcriptional regulator, TetR family K13770 ysiA; TetR/AcrR family transcriptional regulator, fatty acid metabolism regulator protein D Dred_3014 transcriptional regulator, TetR family K18992 cmeR; TetR/AcrR family transcriptional regulator, cmeABC operon repressor D Dred_0598 transcriptional regulator, MarR family K22296 nicR; MarR family transcriptional regulator, lower aerobic nicotinate degradation pathway regulator D Dred_3305 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D Dred_1251 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D Dred_0419 putative transcriptional regulator, MerR family K11923 cueR; MerR family transcriptional regulator, copper efflux regulator D Dred_1874 transcriptional regulator, MerR family K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR D Dred_0650 ferric uptake regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D Dred_0416 regulatory protein, IclR K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor D Dred_0698 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Dred_1262 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Dred_3227 putative transcriptional regulator, Crp/Fnr family K21558 cprK; CRP/FNR family transcriptional regulator, reductive dehalogenation system regulator D Dred_3232 cyclic nucleotide-binding protein K21562 flp; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D Dred_0763 transcriptional regulator, BadM/Rrf2 family K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor D Dred_0559 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D Dred_1528 transcriptional regulator, ArsR family K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor D Dred_2721 iron dependent repressor K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator D Dred_0168 biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D Dred_3250 transcriptional regulator, TrmB K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator D Dred_1544 sigma54 specific transcriptional regulator, Fis family K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D Dred_0258 sigma54 specific transcriptional regulator, Fis family K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D Dred_0580 sigma54 specific transcriptional regulator, Fis family K06714 rocR; arginine utilization regulatory protein D Dred_2877 putative transcriptional regulator, ModE family K02019 modE; molybdate transport system regulatory protein D Dred_2551 CoA-binding domain protein K01926 rex; redox-sensing transcriptional repressor D Dred_1979 GTP-sensing transcriptional pleiotropic repressor CodY K03706 codY; transcriptional pleiotropic repressor D Dred_0752 transcriptional regulator, XRE family K07729 K07729; putative transcriptional regulator D Dred_0590 transcriptional regulator, XRE family K07729 K07729; putative transcriptional regulator D Dred_2581 transcriptional regulator, XRE family K07729 K07729; putative transcriptional regulator D Dred_2895 transcriptional regulator, CopG family K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI D Dred_0333 transcriptional antiterminator, BglG family K03480 glcT; transcriptional antiterminator D Dred_2968 protein of unknown function DUF156 K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D Dred_2141 protein of unknown function DUF156 K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D Dred_0064 transcriptional regulator, AbrB family K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes D Dred_0113 transcriptional regulator, AbrB family K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T D Dred_3320 chromosome segregation DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Dred_0893 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Dred_0185 transcriptional regulator, CarD family K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D Dred_3244 transcriptional regulator, CarD family K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D Dred_0130 glycerol-3-phosphate responsive antiterminator K02443 glpP; glycerol uptake operon antiterminator D Dred_2847 glycerol-3-phosphate responsive antiterminator K02443 glpP; glycerol uptake operon antiterminator D Dred_1083 transcriptional regulator, ArgR family K03402 argR; transcriptional regulator of arginine metabolism D Dred_2499 heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D Dred_0177 transcriptional regulator K03708 ctsR; transcriptional regulator of stress and heat shock response D Dred_0663 putative PAS/PAC sensor protein K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport D Dred_1339 phage shock protein C, PspC K03973 pspC; phage shock protein C D Dred_1519 GreA/GreB family elongation factor K06140 rnk; regulator of nucleoside diphosphate kinase D Dred_2317 tryptophan RNA-binding attenuator protein K06285 mtrB; transcription attenuation protein (tryptophan RNA-binding attenuator protein) D Dred_1680 Uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D Dred_0692 ATP-cone domain protein K07738 nrdR; transcriptional repressor NrdR D Dred_0666 MraZ protein K03925 mraZ; transcriptional regulator MraZ C 03021 Transcription machinery [BR:drm03021] D Dred_0243 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D Dred_0207 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D Dred_0208 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D Dred_1701 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D Dred_2462 RNA polymerase, sigma 70 subunit, RpoD K03086 rpoD; RNA polymerase primary sigma factor D Dred_2286 RNA polymerase, sigma-24 subunit, RpoE K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D Dred_1353 RNA polymerase, sigma-24 subunit, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D Dred_0686 RNA polymerase, sigma 29 subunit, SigE K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor D Dred_0687 RNA polymerase, sigma subunit, RpsG/SigG K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor D Dred_0912 sigma-70 region 4 domain protein K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor D Dred_2655 RNA polymerase, sigma 28 subunit, FliA/WhiG family K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor D Dred_1105 RNA polymerase, sigma subunit, RpoX/SigF K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor D Dred_0997 sigma-70 region 2 domain protein K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor D Dred_0198 RNA polymerase, sigma 30 subunit, SigH K27000 sigH; RNA polymerase sigma-H factor D Dred_2309 sigma-70 region 2 domain protein K03093 sigI; RNA polymerase sigma-I factor D Dred_2992 RNA polymerase, sigma 54 subunit, RpoN/SigL K03092 rpoN; RNA polymerase sigma-54 factor D Dred_2388 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA D Dred_1960 NusA antitermination factor K02600 nusA; transcription termination/antitermination protein NusA D Dred_1069 NusB antitermination factor K03625 nusB; transcription antitermination protein NusB D Dred_0202 transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG D Dred_0174 transcription elongation factor GreA K03624 greA; transcription elongation factor GreA D Dred_3174 transcription termination factor Rho K03628 rho; transcription termination factor Rho C 03019 Messenger RNA biogenesis [BR:drm03019] D Dred_2536 RNAse G K08301 rng; ribonuclease G [EC:3.1.26.-] D Dred_2069 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3] D Dred_1938 beta-lactamase domain protein K12574 rnj; ribonuclease J [EC:3.1.-.-] D Dred_1816 RNase J1 K12574 rnj; ribonuclease J [EC:3.1.-.-] D Dred_1919 metal dependent phosphohydrolase K18682 rny; ribonucrease Y [EC:3.1.-.-] D Dred_1921 ATP-dependent RNA helicase DbpA K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D Dred_2292 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D Dred_0037 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D Dred_1261 ATP-dependent DNA helicase, RecQ-like protein K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D Dred_2987 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Dred_0136 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Dred_1950 Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D Dred_3174 transcription termination factor Rho K03628 rho; transcription termination factor Rho D Dred_2313 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D Dred_2496 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Dred_3115 Heat shock protein 70 K04043 dnaK; molecular chaperone DnaK D Dred_2873 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Dred_1881 RNA-binding protein Hfq K03666 hfq; host factor-I protein D Dred_0158 metal dependent phosphohydrolase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] D Dred_2417 carbon storage regulator, CsrA K03563 csrA; carbon storage regulator D Dred_2430 carbon storage regulator, CsrA K03563 csrA; carbon storage regulator D Dred_3054 Uncharacterized P-loop ATPase protein UPF0042 K06958 rapZ; RNase adapter protein RapZ C 03041 Spliceosome C 03011 Ribosome [BR:drm03011] D Dred_1154 hydroxymethylbutenyl pyrophosphate reductase K02945 RP-S1; small subunit ribosomal protein S1 D Dred_0845 RNA binding S1 domain protein K02945 RP-S1; small subunit ribosomal protein S1 D Dred_0977 RNA binding S1 domain protein K02945 RP-S1; small subunit ribosomal protein S1 D Dred_1978 SSU ribosomal protein S2P K02967 RP-S2; small subunit ribosomal protein S2 D Dred_0221 SSU ribosomal protein S3P K02982 RP-S3; small subunit ribosomal protein S3 D Dred_0242 SSU ribosomal protein S4P K02986 RP-S4; small subunit ribosomal protein S4 D Dred_0232 SSU ribosomal protein S5P K02988 RP-S5; small subunit ribosomal protein S5 D Dred_3308 SSU ribosomal protein S6P K02990 RP-S6; small subunit ribosomal protein S6 D Dred_0211 SSU ribosomal protein S7P K02992 RP-S7; small subunit ribosomal protein S7 D Dred_0229 SSU ribosomal protein S8P K02994 RP-S8; small subunit ribosomal protein S8 D Dred_0257 SSU ribosomal protein S9P K02996 RP-S9; small subunit ribosomal protein S9 D Dred_0214 SSU ribosomal protein S10P K02946 RP-S10; small subunit ribosomal protein S10 D Dred_0241 SSU ribosomal protein S11P K02948 RP-S11; small subunit ribosomal protein S11 D Dred_0210 SSU ribosomal protein S12P K02950 RP-S12; small subunit ribosomal protein S12 D Dred_0240 SSU ribosomal protein S13P K02952 RP-S13; small subunit ribosomal protein S13 D Dred_0228 SSU ribosomal protein S14P K02954 RP-S14; small subunit ribosomal protein S14 D Dred_1951 SSU ribosomal protein S15P K02956 RP-S15; small subunit ribosomal protein S15 D Dred_2055 SSU ribosomal protein S16P K02959 RP-S16; small subunit ribosomal protein S16 D Dred_0224 SSU ribosomal protein S17P K02961 RP-S17; small subunit ribosomal protein S17 D Dred_3306 SSU ribosomal protein S18P K02963 RP-S18; small subunit ribosomal protein S18 D Dred_0219 SSU ribosomal protein S19P K02965 RP-S19; small subunit ribosomal protein S19 D Dred_2505 SSU ribosomal protein S20P K02968 RP-S20; small subunit ribosomal protein S20 D Dred_2490 SSU ribosomal protein S21P K02970 RP-S21; small subunit ribosomal protein S21 D Dred_0204 LSU ribosomal protein L1P K02863 RP-L1; large subunit ribosomal protein L1 D Dred_0218 LSU ribosomal protein L2P K02886 RP-L2; large subunit ribosomal protein L2 D Dred_0215 LSU ribosomal protein L3P K02906 RP-L3; large subunit ribosomal protein L3 D Dred_0216 LSU ribosomal protein L4P K02926 RP-L4; large subunit ribosomal protein L4 D Dred_0227 LSU ribosomal protein L5P K02931 RP-L5; large subunit ribosomal protein L5 D Dred_0230 LSU ribosomal protein L6P K02933 RP-L6; large subunit ribosomal protein L6 D Dred_3303 LSU ribosomal protein L9P K02939 RP-L9; large subunit ribosomal protein L9 D Dred_0205 LSU ribosomal protein L10P K02864 RP-L10; large subunit ribosomal protein L10 D Dred_0203 LSU ribosomal protein L11P K02867 RP-L11; large subunit ribosomal protein L11 D Dred_0206 LSU ribosomal protein L12P K02935 RP-L7; large subunit ribosomal protein L7/L12 D Dred_0256 LSU ribosomal protein L13P K02871 RP-L13; large subunit ribosomal protein L13 D Dred_0225 LSU ribosomal protein L14P K02874 RP-L14; large subunit ribosomal protein L14 D Dred_0234 LSU ribosomal protein L15P K02876 RP-L15; large subunit ribosomal protein L15 D Dred_0222 LSU ribosomal protein L16P K02878 RP-L16; large subunit ribosomal protein L16 D Dred_0244 LSU ribosomal protein L17P K02879 RP-L17; large subunit ribosomal protein L17 D Dred_0231 LSU ribosomal protein L18P K02881 RP-L18; large subunit ribosomal protein L18 D Dred_2050 LSU ribosomal protein L19P K02884 RP-L19; large subunit ribosomal protein L19 D Dred_1615 LSU ribosomal protein L20P K02887 RP-L20; large subunit ribosomal protein L20 D Dred_2535 LSU ribosomal protein L21P K02888 RP-L21; large subunit ribosomal protein L21 D Dred_0220 LSU ribosomal protein L22P K02890 RP-L22; large subunit ribosomal protein L22 D Dred_0217 LSU ribosomal protein L23P K02892 RP-L23; large subunit ribosomal protein L23 D Dred_0226 LSU ribosomal protein L24P K02895 RP-L24; large subunit ribosomal protein L24 D Dred_2534 LSU ribosomal protein L27P K02899 RP-L27; large subunit ribosomal protein L27 D Dred_2089 LSU ribosomal protein L28P K02902 RP-L28; large subunit ribosomal protein L28 D Dred_0223 LSU ribosomal protein L29P K02904 RP-L29; large subunit ribosomal protein L29 D Dred_0233 LSU ribosomal protein L30P K02907 RP-L30; large subunit ribosomal protein L30 D Dred_3172 LSU ribosomal protein L31P K02909 RP-L31; large subunit ribosomal protein L31 D Dred_2078 LSU ribosomal protein L32P K02911 RP-L32; large subunit ribosomal protein L32 D Dred_0200 LSU ribosomal protein L33P K02913 RP-L33; large subunit ribosomal protein L33 D Dred_3329 LSU ribosomal protein L34P K02914 RP-L34; large subunit ribosomal protein L34 D Dred_1614 LSU ribosomal protein L35P K02916 RP-L35; large subunit ribosomal protein L35 D Dred_0239 LSU ribosomal protein L36P K02919 RP-L36; large subunit ribosomal protein L36 D Dred_0108 LSU ribosomal protein L25P K02897 RP-L25; large subunit ribosomal protein L25 D Dred_0209 LSU ribosomal protein L7AE K07590 RP-L7A; large subunit ribosomal protein L7A D Dred_R0005 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Dred_R0033 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Dred_R0049 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Dred_R0052 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Dred_R0092 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Dred_R0076 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Dred_R0018 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Dred_R0020 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Dred_R0027 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Dred_R0059 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Dred_R0014 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Dred_R0031 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Dred_R0078 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Dred_R0001 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Dred_R0094 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Dred_R0047 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Dred_R0050 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Dred_R0061 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Dred_R0032 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Dred_R0077 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Dred_R0051 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Dred_R0060 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Dred_R0048 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Dred_R0093 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Dred_R0004 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Dred_R0017 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:drm03009] D Dred_2069 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3] D Dred_2479 GTP-binding protein Era K03595 era; GTPase D Dred_2532 GTP1/OBG sub domain protein K03979 obgE; GTPase [EC:3.6.5.-] D Dred_1960 NusA antitermination factor K02600 nusA; transcription termination/antitermination protein NusA D Dred_1069 NusB antitermination factor K03625 nusB; transcription antitermination protein NusB D Dred_0202 transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG D Dred_3219 ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D Dred_0077 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D Dred_1707 sun protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D Dred_2085 putative methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D Dred_2493 protein of unknown function DUF558 K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D Dred_3322 16S rRNA m(7)G-527 methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D Dred_0667 S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D Dred_0063 Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D Dred_1883 conserved hypothetical protein K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242] D Dred_1079 hemolysin A K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] D Dred_0196 RNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D Dred_3293 protein of unknown function DUF163 K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D Dred_2060 SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D Dred_1708 23S rRNA m(2)A-2503 methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D Dred_2261 23S rRNA m(5)U-1939 methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D Dred_1142 ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D Dred_1348 pseudouridine synthase, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D Dred_1673 ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D Dred_3230 pseudouridine synthase, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D Dred_0386 pseudouridine synthase, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D Dred_2886 [SSU ribosomal protein S18P]-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D Dred_2052 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM D Dred_1926 SSU ribosomal protein S12P methylthiotransferase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] D Dred_2494 [LSU ribosomal protein L11P]-lysine N-methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] D Dred_2536 RNAse G K08301 rng; ribonuclease G [EC:3.1.26.-] D Dred_0775 Holliday junction resolvase YqgF K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] D Dred_0194 ribonuclease III K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-] D Dred_1921 ATP-dependent RNA helicase DbpA K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D Dred_2292 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D Dred_0037 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D Dred_0751 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D Dred_1715 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D Dred_1160 small GTP-binding protein K03977 engA; GTPase D Dred_2048 Ras superfamily GTP-binding protein YlqF K14540 rbgA; ribosome biogenesis GTPase A D Dred_1259 GTP-binding protein, HSR1-related protein K03665 hflX; GTPase D Dred_3166 translation factor SUA5 K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D Dred_0733 (p)ppGpp synthetase I, SpoT/RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D Dred_1956 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A D Dred_1961 protein of unknown function DUF150 K09748 rimP; ribosome maturation factor RimP D Dred_0003 RNA-binding S4 domain protein K14761 rlbA; ribosome-associated protein D Dred_2516 iojap-like protein K09710 ybeB; ribosome-associated protein D Dred_2482 protein of unknown function UPF0054 K07042 ybeY; probable rRNA maturation factor D Dred_3079 SSU ribosomal protein S30P / sigma 54 modulation protein K05808 hpf; ribosome hibernation promoting factor D Dred_1280 GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase D Dred_2210 GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase D Dred_2079 protein of unknown function DUF177 K07040 yceD; DUF177 domain-containing protein C 03016 Transfer RNA biogenesis [BR:drm03016] D Dred_1131 Polynucleotide adenylyltransferase region K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] D Dred_1967 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D Dred_0718 Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D Dred_2515 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Dred_0065 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D Dred_0189 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18] D Dred_3183 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Dred_0175 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D Dred_0757 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Dred_0769 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Dred_2333 phage tail protein I K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D Dred_1281 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D Dred_1612 Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D Dred_0015 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D Dred_0193 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D Dred_2554 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D Dred_0756 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D Dred_1619 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D Dred_1620 phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D Dred_1647 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Dred_1133 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D Dred_0734 D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] D Dred_2491 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D Dred_0255 tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D Dred_1954 tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D Dred_0764 aminotransferase, class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Dred_1001 aminotransferase, class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Dred_3166 translation factor SUA5 K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D Dred_1882 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D Dred_3324 tRNA modification GTPase trmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D Dred_3323 glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D Dred_1241 selenophosphate synthase K01008 selD; selenide, water dikinase [EC:2.7.9.3] D Dred_3328 ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] D Dred_R0053 RNase P K01978 rnpB; M1 RNA D Dred_2684 RNAse PH K00989 rph; ribonuclease PH [EC:2.7.7.56] D Dred_2473 glycyl-tRNA synthetase alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D Dred_2472 glycyl-tRNA synthetase beta chain K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D Dred_0191 glutamate--tRNA(Gln) ligase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24] D Dred_3222 ybaK/ebsC protein K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-] D Dred_0017 tRNA-adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] D Dred_0172 tRNA-U20-dihydrouridine synthase K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D Dred_1889 tRNA-i(6)A37 thiotransferase enzyme MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] D Dred_2492 RNA modification enzyme, MiaB family K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5] D Dred_1983 gid protein K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74] D Dred_2051 tRNA (Guanine37-N(1)-) methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D Dred_2460 protein of unknown function DUF633 K06967 trmK; tRNA (adenine22-N1)-methyltransferase [EC:2.1.1.217] D Dred_2332 RNA methyltransferase, TrmH family, group 2 K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207] D Dred_1618 tRNA/rRNA methyltransferase (SpoU) K03437 spoU; RNA methyltransferase, TrmH family D Dred_0766 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D Dred_1321 PP-loop domain protein K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA D Dred_1665 S-adenosylmethionine--tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17] D Dred_1755 exsB protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D Dred_1754 preQ(0) biosynthesis protein QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D Dred_1757 Radical SAM domain protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D Dred_1663 protein of unknown function DUF208 K09765 queH; epoxyqueuosine reductase [EC:1.17.99.6] D Dred_1933 Rhodanese domain protein K06917 selU; tRNA 2-selenouridine synthase [EC:2.9.1.3] D Dred_1666 tRNA-guanine transglycosylase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29] D Dred_0125 tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D Dred_2887 peptidase M22, glycoprotease K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D Dred_2885 O-sialoglycoprotein endopeptidase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D Dred_2888 protein of unknown function UPF0079 K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D Dred_0761 UBA/THIF-type NAD/FAD binding protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase D Dred_1950 Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] C 03012 Translation factors [BR:drm03012] D Dred_1957 bacterial translation initiation factor 2 (bIF-2) K02519 infB; translation initiation factor IF-2 D Dred_1613 bacterial translation initiation factor 3 (bIF-3) K02520 infC; translation initiation factor IF-3 D Dred_1432 ABC transporter related protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3 D Dred_1977 translation elongation factor Ts (EF-Ts) K02357 tsf; elongation factor Ts D Dred_0199 translation elongation factor Tu K02358 tuf; elongation factor Tu D Dred_0213 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu D Dred_1762 translation elongation factor 2 (EF-2/EF-G) K02355 fusA; elongation factor G D Dred_0212 translation elongation factor 2 (EF-2/EF-G) K02355 fusA; elongation factor G D Dred_2185 selenocysteine-specific translation elongation factor SelB K03833 selB; selenocysteine-specific elongation factor D Dred_3170 bacterial peptide chain release factor 1 (bRF-1) K02835 prfA; peptide chain release factor 1 D Dred_1975 ribosome recycling factor K02838 frr; ribosome recycling factor D Dred_3169 [protein release factor]-glutamine N5-methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D Dred_0109 peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D Dred_0238 bacterial translation initiation factor 1 (bIF-1) K02518 infA; translation initiation factor IF-1 D Dred_1052 translation elongation factor P (EF-P) K02356 efp; elongation factor P D Dred_3077 bacterial peptide chain release factor 2 (bRF-2) K02836 prfB; peptide chain release factor 2 D Dred_0398 bacterial peptide chain release factor 3 (bRF-3) K02837 prfC; peptide chain release factor 3 C 03110 Chaperones and folding catalysts [BR:drm03110] D Dred_0180 ATPase AAA-2 domain protein K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC D Dred_2561 ATP-dependent Clp protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D Dred_1980 heat shock protein HslVU, ATPase subunit HslU K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU D Dred_1472 heat shock protein Hsp90 K09488 TRAP1; TNF receptor-associated protein 1 D Dred_2496 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Dred_3115 Heat shock protein 70 K04043 dnaK; molecular chaperone DnaK D Dred_2873 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Dred_2498 chaperonin Cpn60/TCP-1 K22447 cct; archaeal chaperonin D Dred_2495 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D Dred_1343 Hsp33 protein K04083 hslO; molecular chaperone Hsp33 D Dred_2497 GrpE protein K03687 GRPE; molecular chaperone GrpE D Dred_2874 chaperonin Cpn10 K04078 groES; chaperonin GroES D Dred_0641 peptidase S1 and S6, chymotrypsin/Hap K04771 degP; serine protease Do [EC:3.4.21.107] D Dred_0467 peptidase S1 and S6, chymotrypsin/Hap K04771 degP; serine protease Do [EC:3.4.21.107] D Dred_0758 peptidase S1 and S6, chymotrypsin/Hap K04771 degP; serine protease Do [EC:3.4.21.107] D Dred_0126 membrane protease FtsH catalytic subunit K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D Dred_1923 Vesicle-fusing ATPase K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D Dred_3156 ATP synthase F0 subcomplex A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D Dred_1741 Peptidylprolyl isomerase K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] D Dred_0762 thioredoxin K03671 TXN; thioredoxin D Dred_0904 thioredoxin K03671 TXN; thioredoxin D Dred_2669 Thioredoxin domain protein K03671 TXN; thioredoxin C 04131 Membrane trafficking [BR:drm04131] D Dred_0127 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D Dred_1810 hexokinase K00844 HK; hexokinase [EC:2.7.1.1] D Dred_2991 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Dred_0132 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Dred_0381 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Dred_2312 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] C 04121 Ubiquitin system [BR:drm04121] C 03051 Proteasome [BR:drm03051] C 03032 DNA replication proteins [BR:drm03032] D Dred_2456 RNase HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D Dred_0115 bacterial nucleoid protein Hbs K03530 hupB; DNA-binding protein HU-beta D Dred_0001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D Dred_3301 primary replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D Dred_2013 replicative DNA helicase loader DnaI K02315 dnaC; DNA replication protein DnaC D Dred_0503 conserved hypothetical protein K02315 dnaC; DNA replication protein DnaC D Dred_2463 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D Dred_3307 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Dred_2617 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Dred_0980 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Dred_2319 DNA polymerase III catalytic subunit, DnaE type K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Dred_1965 DNA polymerase III catalytic subunit, PolC type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D Dred_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Dred_2506 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Dred_0060 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Dred_0042 DNA polymerase III, tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Dred_2047 Ribonuclease H K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D Dred_0914 Ribonuclease H K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D Dred_1599 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Dred_2346 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Dred_0878 D12 class N6 adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D Dred_0007 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D Dred_0006 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D Dred_1984 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D Dred_0974 DNA topoisomerase III K03169 topB; DNA topoisomerase III [EC:5.6.2.1] D Dred_3223 DNA topoisomerase III K03169 topB; DNA topoisomerase III [EC:5.6.2.1] D Dred_1853 DNA topoisomerase III K03169 topB; DNA topoisomerase III [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:drm03036] D Dred_2069 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3] D Dred_0115 bacterial nucleoid protein Hbs K03530 hupB; DNA-binding protein HU-beta D Dred_0001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D Dred_1881 RNA-binding protein Hfq K03666 hfq; host factor-I protein D Dred_2068 condensin subunit Smc K03529 smc; chromosome segregation protein D Dred_1134 condensin subunit ScpA K05896 scpA; segregation and condensation protein A D Dred_1135 condensin subunit ScpB K06024 scpB; segregation and condensation protein B D Dred_0683 cell division protein FtsA K03590 ftsA; cell division protein FtsA D Dred_3073 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D Dred_1934 DNA translocase FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D Dred_2583 cell division protein FtsK/SpoIIIE K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D Dred_0668 cell division protein FtsL K03586 ftsL; cell division protein FtsL D Dred_0679 cell division protein FtsQ K03589 ftsQ; cell division protein FtsQ D Dred_0674 cell division-specific peptidoglycan biosynthesis regulator FtsW K03588 ftsW; cell division protein FtsW D Dred_3072 cell division protein FtsX K09811 ftsX; cell division transport system permease protein D Dred_0684 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D Dred_1633 cell division protein ZapA K09888 zapA; cell division protein ZapA D Dred_1578 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Dred_0265 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Dred_2693 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Dred_2281 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Dred_1228 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Dred_0618 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Dred_2576 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Dred_2589 cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D Dred_2954 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Dred_1900 septum site-determining protein MinC K03610 minC; septum site-determining protein MinC D Dred_2544 septum site-determining protein MinC K03610 minC; septum site-determining protein MinC D Dred_2543 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D Dred_0800 ATPases involved in chromosome partitioning-like protein K03609 minD; septum site-determining protein MinD D Dred_2542 cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor D Dred_0716 DivIVA family protein K04074 divIVA; cell division initiation protein D Dred_0713 protein of unknown function DUF552 K09772 sepF; cell division inhibitor SepF D Dred_1320 protein of unknown function DUF552 K09772 sepF; cell division inhibitor SepF D Dred_2548 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D Dred_3144 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D Dred_2547 rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC D Dred_2546 conserved hypothetical protein K03571 mreD; rod shape-determining protein MreD D Dred_2541 rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA D Dred_3321 chromosome segregation ATPase K03496 parA; chromosome partitioning protein D Dred_0892 Cobyrinic acid a,c-diamide synthase K03496 parA; chromosome partitioning protein D Dred_3320 chromosome segregation DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Dred_0893 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Dred_3323 glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D Dred_3322 16S rRNA m(7)G-527 methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D Dred_1983 gid protein K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74] D Dred_1982 tyrosine recombinase XerC subunit K03733 xerC; integrase/recombinase XerC D Dred_0370 phage integrase family protein K04763 xerD; integrase/recombinase XerD D Dred_1099 tyrosine recombinase XerD subunit K04763 xerD; integrase/recombinase XerD D Dred_0863 phage integrase domain protein SAM domain protein K04763 xerD; integrase/recombinase XerD D Dred_0967 phage integrase family protein K04763 xerD; integrase/recombinase XerD D Dred_1820 phage integrase family protein K04763 xerD; integrase/recombinase XerD D Dred_2124 phage integrase family protein K04763 xerD; integrase/recombinase XerD D Dred_2794 phage integrase family protein K04763 xerD; integrase/recombinase XerD D Dred_0114 MazG family protein K02499 yabN; tetrapyrrole methylase family protein / MazG family protein D Dred_0937 filamentation induced by cAMP protein Fic K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108] D Dred_0817 filamentation induced by cAMP protein Fic K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108] D Dred_2558 small GTP-binding protein K03978 engB; GTP-binding protein D Dred_2994 protein of unknown function DUF199 K09762 whiA; cell division protein WhiA C 03400 DNA repair and recombination proteins [BR:drm03400] D Dred_2924 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D Dred_1635 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] D Dred_2331 DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D Dred_2447 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Dred_0491 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D Dred_3067 phage SPO1 DNA polymerase-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D Dred_1598 DNA-(apurinic or apyrimidinic site) lyase / Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D Dred_1180 Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D Dred_0485 Endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D Dred_0731 exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D Dred_2346 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Dred_1599 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D Dred_3065 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A D Dred_3066 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B D Dred_3057 Excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C D Dred_2348 ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D Dred_0207 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D Dred_0208 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D Dred_0243 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D Dred_1701 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D Dred_0111 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D Dred_1887 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Dred_1638 DNA mismatch repair protein, MutS family K07456 mutS2; DNA mismatch repair protein MutS2 D Dred_1884 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Dred_1072 Exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D Dred_1075 Exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D Dred_2319 DNA polymerase III catalytic subunit, DnaE type K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D Dred_1965 DNA polymerase III catalytic subunit, PolC type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D Dred_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D Dred_2506 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D Dred_0060 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D Dred_0042 DNA polymerase III, tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D Dred_3307 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Dred_2617 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Dred_0980 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Dred_0878 D12 class N6 adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D Dred_1920 RecA protein K03553 recA; recombination protein RecA D Dred_1661 Holliday junction DNA helicase subunit RuvA K03550 ruvA; holliday junction DNA helicase RuvA D Dred_1662 Holliday junction DNA helicase subunit RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D Dred_1660 Holliday junction endonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D Dred_0504 endodeoxyribonuclease RusA K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10] D Dred_1703 replication restart DNA helicase PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D Dred_2570 SMC domain protein K03546 sbcC; DNA repair protein SbcC/Rad50 D Dred_2571 metallophosphoesterase K03547 sbcD; DNA repair protein SbcD/Mre11 D Dred_0182 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms D Dred_0004 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF D Dred_2088 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D Dred_2475 DNA replication and repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D Dred_0044 DNA replication and repair protein RecR K06187 recR; recombination protein RecR D Dred_1084 DNA replication and repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D Dred_1416 DNA helicase/exodeoxyribonuclease V, subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] D Dred_1415 UvrD-like DNA helicase, C terminal protein K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Dred_1007 CRISPR-associated protein, Cas1 family K15342 cas1; CRISP-associated protein Cas1 D Dred_0541 CRISPR-associated protein, Cas1 family K15342 cas1; CRISP-associated protein Cas1 D Dred_1625 CRISPR-associated protein, Cas1 family / CRISPR-associated exonuclease, Cas4 family K15342 cas1; CRISP-associated protein Cas1 D Dred_2003 DNA end-binding protein Ku K10979 ku; DNA end-binding protein Ku D Dred_1986 DNA primase, small subunit K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D Dred_0007 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D Dred_0006 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D Dred_1984 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D Dred_0115 bacterial nucleoid protein Hbs K03530 hupB; DNA-binding protein HU-beta D Dred_1261 ATP-dependent DNA helicase, RecQ-like protein K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D Dred_1873 SOS-response transcriptional repressor, LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D Dred_1183 putative prophage repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D Dred_2624 putative prophage repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D Dred_1832 regulatory protein RecX K03565 recX; regulatory protein D Dred_1634 PHP C-terminal domain protein K02347 polX; DNA polymerase (family X) D Dred_1743 DNA polymerase III, epsilon subunit K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D Dred_1955 phosphoesterase, RecJ domain protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] C 03029 Mitochondrial biogenesis [BR:drm03029] D Dred_1957 bacterial translation initiation factor 2 (bIF-2) K02519 infB; translation initiation factor IF-2 D Dred_1613 bacterial translation initiation factor 3 (bIF-3) K02520 infC; translation initiation factor IF-3 D Dred_1977 translation elongation factor Ts (EF-Ts) K02357 tsf; elongation factor Ts D Dred_0199 translation elongation factor Tu K02358 tuf; elongation factor Tu D Dred_0213 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu D Dred_1762 translation elongation factor 2 (EF-2/EF-G) K02355 fusA; elongation factor G D Dred_0212 translation elongation factor 2 (EF-2/EF-G) K02355 fusA; elongation factor G D Dred_2479 GTP-binding protein Era K03595 era; GTPase D Dred_1647 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D Dred_2515 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D Dred_0757 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D Dred_3183 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D Dred_2341 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D Dred_2340 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D Dred_2342 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D Dred_3307 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Dred_2617 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Dred_0980 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Dred_2496 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Dred_3115 Heat shock protein 70 K04043 dnaK; molecular chaperone DnaK D Dred_2497 GrpE protein K03687 GRPE; molecular chaperone GrpE D Dred_2873 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Dred_2874 chaperonin Cpn10 K04078 groES; chaperonin GroES D Dred_2495 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D Dred_0764 aminotransferase, class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Dred_1001 aminotransferase, class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Dred_3326 protein translocase subunit yidC K03217 yidC; YidC/Oxa1 family membrane protein insertase B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:drm02000] D Dred_1642 ABC transporter, transmembrane region, type 1 K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC D Dred_1641 ABC transporter, transmembrane region, type 1 K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD D Dred_1814 ABC transporter related protein K15738 uup; ABC transport system ATP-binding/permease protein D Dred_1849 tungstate/molybdate binding protein K15495 wtpA; molybdate/tungstate transport system substrate-binding protein D Dred_2301 extracellular solute-binding protein, family 1 K05772 tupA; tungstate transport system substrate-binding protein D Dred_2270 binding-protein-dependent transport systems inner membrane component K05773 tupB; tungstate transport system permease protein D Dred_2269 carbohydrate ABC transporter ATP-binding protein, CUT1 family K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6] D Dred_1573 extracellular solute-binding protein, family 3 K15553 ssuA; sulfonate transport system substrate-binding protein D Dred_1575 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein D Dred_1574 ABC transporter related protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D Dred_1529 extracellular solute-binding protein, family 1 K02012 afuA; iron(III) transport system substrate-binding protein D Dred_1530 binding-protein-dependent transport systems inner membrane component K02011 afuB; iron(III) transport system permease protein D Dred_1531 ABC transporter related protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D Dred_0473 Substrate-binding region of ABC-type glycine betaine transport system K02002 proX; glycine betaine/proline transport system substrate-binding protein D Dred_3207 Substrate-binding region of ABC-type glycine betaine transport system K02002 proX; glycine betaine/proline transport system substrate-binding protein D Dred_3208 binding-protein-dependent transport systems inner membrane component K02001 proW; glycine betaine/proline transport system permease protein D Dred_3209 glycine betaine/L-proline ABC transporter, ATPase subunit K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D Dred_0437 conserved hypothetical protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D Dred_1836 ABC-type nitrate/sulfonate/taurine/bicarbonate transport systems, periplasmic component K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D Dred_2782 NLPA lipoprotein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D Dred_3204 membrane lipoprotein lipid attachment site K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D Dred_0438 binding-protein-dependent transport systems inner membrane component K02050 ABC.SN.P; NitT/TauT family transport system permease protein D Dred_1834 binding-protein-dependent transport systems inner membrane component K02050 ABC.SN.P; NitT/TauT family transport system permease protein D Dred_2780 binding-protein-dependent transport systems inner membrane component K02050 ABC.SN.P; NitT/TauT family transport system permease protein D Dred_3205 binding-protein-dependent transport systems inner membrane component K02050 ABC.SN.P; NitT/TauT family transport system permease protein D Dred_2779 ABC transporter related protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D Dred_0439 ABC transporter related protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D Dred_1835 ABC transporter related protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D Dred_3203 ABC transporter related protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D Dred_2522 ribose-binding protein K10439 rbsB; ribose transport system substrate-binding protein D Dred_2523 ribose ABC transporter membrane protein K10440 rbsC; ribose transport system permease protein D Dred_2524 monosaccharide ABC transporter ATP-binding protein, CUT2 family K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D Dred_2177 nucleoside-binding protein K07335 bmpA; basic membrane protein A and related proteins D Dred_2769 nucleoside-binding protein K07335 bmpA; basic membrane protein A and related proteins D Dred_2175 nucleoside ABC transporter membrane protein K23535 nupB; general nucleoside transport system permease protein D Dred_2767 nucleoside ABC transporter membrane protein K23535 nupB; general nucleoside transport system permease protein D Dred_2766 nucleoside ABC transporter membrane protein K23536 nupC; general nucleoside transport system permease protein D Dred_2174 nucleoside ABC transporter membrane protein K23536 nupC; general nucleoside transport system permease protein D Dred_2176 nucleoside ABC transporter ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein D Dred_2768 nucleoside ABC transporter ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein D Dred_1807 conserved hypothetical protein 245 K02069 STAR2; UDP-glucose/iron transport system permease protein D Dred_1808 ABC transporter related protein K02068 STAR1; UDP-glucose/iron transport system ATP-binding protein D Dred_2106 phosphate ABC transporter substrate-binding protein, PhoT family K02040 pstS; phosphate transport system substrate-binding protein D Dred_2295 phosphate ABC transporter substrate-binding protein, PhoT family K02040 pstS; phosphate transport system substrate-binding protein D Dred_2105 phosphate ABC transporter membrane protein 1, PhoT family K02037 pstC; phosphate transport system permease protein D Dred_2296 phosphate ABC transporter membrane protein 1, PhoT family K02037 pstC; phosphate transport system permease protein D Dred_2104 phosphate ABC transporter membrane protein 2, PhoT family K02038 pstA; phosphate transport system permease protein D Dred_2297 phosphate ABC transporter membrane protein 2, PhoT family K02038 pstA; phosphate transport system permease protein D Dred_0709 phosphate ABC transporter ATP-binding protein, PhoT family K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D Dred_2298 phosphate ABC transporter ATP-binding protein, PhoT family K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D Dred_0727 amino acid ABC transporter substrate-binding protein, PAAT family K10036 glnH; glutamine transport system substrate-binding protein D Dred_0728 amino acid ABC transporter membrane protein, PAAT family K10037 glnP; glutamine transport system permease protein D Dred_0729 amino acid ABC transporter ATP-binding protein, PAAT family K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1] D Dred_2240 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein D Dred_2935 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein D Dred_1720 amino acid/amide ABC transporter substrate-binding protein, HAAT family K01999 livK; branched-chain amino acid transport system substrate-binding protein D Dred_2239 amino acid/amide ABC transporter membrane protein 1, HAAT family K01997 livH; branched-chain amino acid transport system permease protein D Dred_2934 amino acid/amide ABC transporter membrane protein 1, HAAT family K01997 livH; branched-chain amino acid transport system permease protein D Dred_1721 amino acid/amide ABC transporter membrane protein 1, HAAT family K01997 livH; branched-chain amino acid transport system permease protein D Dred_2238 amino acid/amide ABC transporter membrane protein 2, HAAT family K01998 livM; branched-chain amino acid transport system permease protein D Dred_2933 amino acid/amide ABC transporter membrane protein 2, HAAT family K01998 livM; branched-chain amino acid transport system permease protein D Dred_1722 amino acid/amide ABC transporter membrane protein 2, HAAT family K01998 livM; branched-chain amino acid transport system permease protein D Dred_2237 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family K01995 livG; branched-chain amino acid transport system ATP-binding protein D Dred_2932 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family K01995 livG; branched-chain amino acid transport system ATP-binding protein D Dred_1723 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family K01995 livG; branched-chain amino acid transport system ATP-binding protein D Dred_1724 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family K01996 livF; branched-chain amino acid transport system ATP-binding protein D Dred_2236 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family K01996 livF; branched-chain amino acid transport system ATP-binding protein D Dred_2931 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family K01996 livF; branched-chain amino acid transport system ATP-binding protein D Dred_2654 NLPA lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein D Dred_2653 binding-protein-dependent transport systems inner membrane component K02072 metI; D-methionine transport system permease protein D Dred_2652 ABC transporter related protein K02071 metN; D-methionine transport system ATP-binding protein D Dred_2840 protein of unknown function DUF534 K01989 K01989; putative tryptophan/tyrosine transport system substrate-binding protein D Dred_1569 protein of unknown function DUF534 K01989 K01989; putative tryptophan/tyrosine transport system substrate-binding protein D Dred_2227 protein of unknown function DUF534 K01989 K01989; putative tryptophan/tyrosine transport system substrate-binding protein D Dred_1570 inner-membrane translocator K05832 K05832; putative tryptophan/tyrosine transport system permease protein D Dred_2226 inner-membrane translocator K05832 K05832; putative tryptophan/tyrosine transport system permease protein D Dred_1571 ABC transporter related protein K05833 K05833; putative tryptophan/tyrosine transport system ATP-binding protein D Dred_2225 ABC transporter related protein K05833 K05833; putative tryptophan/tyrosine transport system ATP-binding protein D Dred_2235 amino acid ABC transporter substrate-binding protein, PAAT family K17073 lysX1; putative lysine transport system substrate-binding protein D Dred_2234 amino acid ABC transporter membrane protein, PAAT family K17074 lysX2; putative lysine transport system permease protein D Dred_2233 amino acid ABC transporter ATP-binding protein, PAAT family K17076 lysY; putative lysine transport system ATP-binding protein D Dred_0743 amino acid ABC transporter substrate-binding protein, PAAT family K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Dred_0771 amino acid ABC transporter substrate-binding protein, PAAT family K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Dred_1377 amino acid ABC transporter substrate-binding protein, PAAT family K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D Dred_0742 amino acid ABC transporter membrane protein, PAAT family K02029 ABC.PA.P; polar amino acid transport system permease protein D Dred_1376 amino acid ABC transporter membrane protein, PAAT family K02029 ABC.PA.P; polar amino acid transport system permease protein D Dred_0741 amino acid ABC transporter ATP-binding protein, PAAT family K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D Dred_1375 amino acid ABC transporter ATP-binding protein, PAAT family K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D Dred_1562 extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Dred_2454 extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Dred_0484 extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Dred_0389 extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D Dred_1563 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D Dred_0390 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D Dred_2453 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein D Dred_0391 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Dred_1564 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Dred_2452 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein D Dred_1565 oligopeptide/dipeptide ABC transporter, ATPase subunit K02031 ddpD; peptide/nickel transport system ATP-binding protein D Dred_2451 oligopeptide/dipeptide ABC transporter, ATPase subunit K02031 ddpD; peptide/nickel transport system ATP-binding protein D Dred_0392 oligopeptide/dipeptide ABC transporter, ATPase subunit K02031 ddpD; peptide/nickel transport system ATP-binding protein D Dred_1566 oligopeptide/dipeptide ABC transporter, ATPase subunit K02032 ddpF; peptide/nickel transport system ATP-binding protein D Dred_2450 oligopeptide/dipeptide ABC transporter, ATPase subunit K02032 ddpF; peptide/nickel transport system ATP-binding protein D Dred_0393 oligopeptide/dipeptide ABC transporter, ATPase subunit K02032 ddpF; peptide/nickel transport system ATP-binding protein D Dred_2645 periplasmic solute binding protein K09815 znuA; zinc transport system substrate-binding protein D Dred_2647 ABC-3 protein K09816 znuB; zinc transport system permease protein D Dred_2646 ABC transporter related protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D Dred_2732 Cobalt transport protein CbiN K02009 cbiN; cobalt/nickel transport protein D Dred_2566 hypothetical protein K02009 cbiN; cobalt/nickel transport protein D Dred_2565 cobalt ABC transporter, inner membrane subunit CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein D Dred_2733 cobalt ABC transporter, inner membrane subunit CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein D Dred_2567 cobalamin (vitamin B12) biosynthesis CbiM protein K02007 cbiM; cobalt/nickel transport system permease protein D Dred_2731 cobalamin biosynthesis protein CbiM K02007 cbiM; cobalt/nickel transport system permease protein D Dred_2564 cobalt ABC transporter, ATPase subunit K02006 cbiO; cobalt/nickel transport system ATP-binding protein D Dred_2734 cobalt ABC transporter, ATPase subunit K02006 cbiO; cobalt/nickel transport system ATP-binding protein D Dred_0169 BioY protein K03523 bioY; biotin transport system substrate-specific component D Dred_2675 conserved hypothetical protein K16927 cbrT; energy-coupling factor transport system substrate-specific component D Dred_0247 cobalt transport protein K16785 ecfT; energy-coupling factor transport system permease protein D Dred_2677 cobalt transport protein K16785 ecfT; energy-coupling factor transport system permease protein D Dred_0245 ABC transporter related protein K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D Dred_0246 ABC transporter related protein K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D Dred_2676 ABC transporter related protein K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D Dred_3132 ABC-2 type transporter K09690 wzm; homopolymeric O-antigen transport system permease protein D Dred_3131 ABC transporter related protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14] D Dred_1589 ABC-2 type transporter K25181 ybhS; drug efflux transport system permease protein D Dred_1587 ABC transporter related protein K25182 ybhF; drug efflux transport system ATP-binding protein D Dred_1588 ABC transporter related protein K25182 ybhF; drug efflux transport system ATP-binding protein D Dred_1586 secretion protein HlyD family protein K25183 ybhG; membrane fusion protein YbhG D Dred_3241 hypothetical protein K16919 ytrC_D; acetoin utilization transport system permease protein D Dred_3242 ABC transporter related protein K16921 ytrB; acetoin utilization transport system ATP-binding protein D Dred_3072 cell division protein FtsX K09811 ftsX; cell division transport system permease protein D Dred_3073 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D Dred_3063 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein D Dred_3062 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein D Dred_1357 conserved hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D Dred_1514 ABC transporter related protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Dred_3061 ABC transporter related protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Dred_1356 ABC transporter related protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D Dred_2926 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein D Dred_2974 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein D Dred_0320 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein D Dred_2927 ABC transporter related protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D Dred_2973 ABC transporter related protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D Dred_0318 ABC transporter related protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D Dred_1988 anion transporter K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5 D Dred_1991 anion transporter K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5 D Dred_0362 sodium/sulphate symporter K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5 D Dred_0387 MATE efflux family protein K26939 norM; MATE family, multidrug efflux pump D Dred_1839 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump D Dred_0431 major facilitator superfamily MFS_1 K03535 gudP; MFS transporter, ACS family, glucarate transporter D Dred_2870 glycerol-3-phosphate transporter K02445 glpT; MFS transporter, OPA family, glycerol-3-phosphate transporter D Dred_1678 major facilitator superfamily MFS_1 K08221 yitG; MFS transporter, ACDE family, multidrug resistance protein D Dred_0578 General substrate transporter K08368 yaaU; MFS transporter, putative metabolite transport protein D Dred_1523 major facilitator superfamily MFS_1 K08369 ydjE; MFS transporter, putative metabolite:H+ symporter D Dred_0330 phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D Dred_0331 Phosphotransferase system, phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr D Dred_3055 Phosphotransferase system, phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr D Dred_0332 PTS system D-glucosamine-specific IIB component, Glc family / PTS system D-glucosamine-specific IIC component, Glc family / PTS system D-glucosamine-specific IIA component, Glc family K20118 ptsG; glucose PTS system EIICBA or EIICB component [EC:2.7.1.199] D Dred_2846 MIP family channel protein K02440 glpF; glycerol uptake facilitator D Dred_0471 TrkA-N domain protein K10716 kch; voltage-gated potassium channel D Dred_1173 Ion transport 2 domain protein K10716 kch; voltage-gated potassium channel D Dred_2862 ammonium transporter K03320 amt; ammonium transporter, Amt family D Dred_2244 von Willebrand factor, type A K07114 yfbK; Ca-activated chloride channel homolog D Dred_3310 MscS Mechanosensitive ion channel K22044 ybiO; moderate conductance mechanosensitive channel D Dred_0355 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Dred_2443 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Dred_0354 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Dred_2442 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Dred_2662 Mg2+ transporter protein, CorA family protein K03284 corA; magnesium transporter D Dred_2307 magnesium and cobalt transport protein CorA K03284 corA; magnesium transporter D Dred_1480 camphor resistance protein CrcB K06199 crcB; fluoride exporter D Dred_1481 camphor resistance protein CrcB K06199 crcB; fluoride exporter D Dred_1580 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family D Dred_3141 hypothetical protein K12340 tolC; outer membrane protein D Dred_1294 ethanolamine:proton symporter, EAT family K16238 eat; ethanolamine permease D Dred_0055 spore germination protein K06296 gerKB; spore germination protein KB D Dred_0051 spore germination protein K06296 gerKB; spore germination protein KB D Dred_2837 conserved hypothetical protein K06296 gerKB; spore germination protein KB D Dred_1733 spore germination protein K06296 gerKB; spore germination protein KB D Dred_2665 spore germination protein K06311 yndE; spore germination protein D Dred_2664 spore germination protein K06311 yndE; spore germination protein D Dred_3289 small multidrug resistance protein K03297 emrE; small multidrug resistance pump D Dred_3013 small multidrug resistance protein K11741 sugE; quaternary ammonium compound-resistance protein SugE D Dred_0621 RarD protein, DMT superfamily transporter K05786 rarD; chloramphenicol-sensitive protein RarD D Dred_0091 protein of unknown function DUF606 K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein D Dred_2205 L-lactate transport K03303 lutP; lactate permease D Dred_2189 L-lactate transport K03303 lutP; lactate permease D Dred_2190 L-lactate transport K03303 lutP; lactate permease D Dred_0569 choline/carnitine/betaine transporter K05245 caiT; L-carnitine/gamma-butyrobetaine antiporter D Dred_2521 sodium/calcium exchanger membrane region K07301 yrbG; cation:H+ antiporter D Dred_3226 transporter, NhaC family K03315 nhaC; Na+:H+ antiporter, NhaC family D Dred_1645 transporter, NhaC family K18218 tet35; tetracycline resistance efflux pump D Dred_1517 potassium/proton antiporter regulatory subunit, CPA2 family K07228 khtT; K+:H+ antiporter subunit KhtT D Dred_1518 potassium/proton antiporter membrane subunit, CPA2 family K26732 khtU; K+:H+ antiporter subunit KhtU D Dred_1616 potassium uptake protein, TrkH family K03498 trkH; trk/ktr system potassium uptake protein D Dred_2912 potassium uptake protein, TrkH family K03498 trkH; trk/ktr system potassium uptake protein D Dred_1617 TrkA-N domain protein K03499 trkA; trk/ktr system potassium uptake protein D Dred_2911 TrkA-N domain protein K03499 trkA; trk/ktr system potassium uptake protein D Dred_1545 permease for cytosine/purines, uracil, thiamine, allantoin K10974 codB; cytosine permease D Dred_1317 uracil-xanthine permease K02824 uraA; uracil permease D Dred_2302 Xanthine/uracil/vitamin C permease K06901 pbuG; adenine/guanine/hypoxanthine permease D Dred_2372 Xanthine/uracil/vitamin C permease K06901 pbuG; adenine/guanine/hypoxanthine permease D Dred_2944 Cl-channel, voltage-gated family protein K03281 clcA; chloride channel protein, CIC family D Dred_1337 Chromate transporter K07240 chrA; chromate transporter D Dred_1643 sulphate transporter K03321 TC.SULP; sulfate permease, SulP family D Dred_1995 sulphate transporter K03321 TC.SULP; sulfate permease, SulP family D Dred_0408 Tripartite ATP-independent periplasmic transporter, DctQ component K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit D Dred_2757 TRAP dicarboxylate transporter, DctP subunit K21395 yiaO; TRAP-type transport system periplasmic protein D Dred_0407 TRAP dicarboxylate transporter, DctP subunit K21395 yiaO; TRAP-type transport system periplasmic protein D Dred_2745 Na/Pi-cotransporter II-related protein K03324 yjbB; phosphate:Na+ symporter D Dred_1581 Na/Pi-cotransporter II-related protein K03324 yjbB; phosphate:Na+ symporter D Dred_1378 Na/Pi-cotransporter II-related protein K03324 yjbB; phosphate:Na+ symporter D Dred_0558 arsenical-resistance protein K03325 ACR3; arsenite transporter D Dred_0554 Bile acid:sodium symporter K03325 ACR3; arsenite transporter D Dred_1761 polysaccharide biosynthesis protein K06409 spoVB; stage V sporulation protein B D Dred_3098 integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase D Dred_2568 AzlC family protein K26605 azlC; branched chain amino acid efflux pump D Dred_2569 branched-chain amino acid transport K26606 azlD; branched chain amino acid efflux pump D Dred_0674 cell division-specific peptidoglycan biosynthesis regulator FtsW K03588 ftsW; cell division protein FtsW D Dred_3165 protein of unknown function DUF204 K23242 mntP; manganese efflux pump family protein D Dred_3167 high-affinity nickel-transporter K08970 rcnA; nickel/cobalt transporter (NicO) family protein D Dred_0852 hypothetical protein K03646 tolA; colicin import membrane protein D Dred_0986 hypothetical protein K03646 tolA; colicin import membrane protein D Dred_1354 WD40 domain protein beta Propeller K03641 tolB; TolB protein D Dred_2985 V-type H(+)-translocating pyrophosphatase K15987 hppA; K(+)-stimulated pyrophosphate-energized sodium pump [EC:7.2.3.1] D Dred_1064 acetyl-CoA carboxylase, biotin carboxyl carrier protein K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2] D Dred_1532 cytochrome c biogenesis protein, transmembrane region K06196 ccdA; cytochrome c-type biogenesis protein D Dred_0551 cytochrome c biogenesis protein, transmembrane region K06196 ccdA; cytochrome c-type biogenesis protein D Dred_2954 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Dred_3000 capsular exopolysaccharide family K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3] D Dred_3001 lipopolysaccharide biosynthesis K19420 epsA; protein tyrosine kinase modulator D Dred_2718 FeoA family protein K04758 feoA; ferrous iron transport protein A D Dred_2724 FeoA family protein K04758 feoA; ferrous iron transport protein A D Dred_2725 FeoA family protein K04758 feoA; ferrous iron transport protein A D Dred_0648 small GTP-binding protein K04759 feoB; ferrous iron transport protein B D Dred_2723 ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B D Dred_2720 Ferrous iron transport B domain protein K04759 feoB; ferrous iron transport protein B D Dred_0661 small GTP-binding protein K04759 feoB; ferrous iron transport protein B D Dred_0446 MgtC/SapB transporter K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein C 02044 Secretion system [BR:drm02044] D Dred_3141 hypothetical protein K12340 tolC; outer membrane protein D Dred_1024 hypothetical protein K02456 gspG; general secretion pathway protein G D Dred_0951 peptidase A24A, prepilin type IV K02464 gspO; general secretion pathway protein O [EC:3.4.23.43 2.1.1.-] D Dred_1047 type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D Dred_1042 hypothetical protein K02650 pilA; type IV pilus assembly protein PilA D Dred_1034 type II secretion system protein E (GspE) K02652 pilB; type IV pilus assembly protein PilB D Dred_1023 type II secretion system protein K02653 pilC; type IV pilus assembly protein PilC D Dred_1036 type II secretion system protein K02653 pilC; type IV pilus assembly protein PilC D Dred_1037 type IV pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM D Dred_1029 type IV pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM D Dred_1038 Fimbrial assembly family protein K02663 pilN; type IV pilus assembly protein PilN D Dred_1030 Fimbrial assembly family protein K02663 pilN; type IV pilus assembly protein PilN D Dred_1039 hypothetical protein K02664 pilO; type IV pilus assembly protein PilO D Dred_1031 hypothetical protein K02664 pilO; type IV pilus assembly protein PilO D Dred_1041 hypothetical protein K02666 pilQ; type IV pilus assembly protein PilQ D Dred_1035 pilus retraction ATPase PilT K02669 pilT; twitching motility protein PilT D Dred_2111 peptidase A24A, prepilin type IV K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D Dred_2114 SAF domain protein K02279 cpaB; pilus assembly protein CpaB D Dred_0824 SAF domain protein K02279 cpaB; pilus assembly protein CpaB D Dred_0953 hypothetical protein K02279 cpaB; pilus assembly protein CpaB D Dred_2115 response regulator receiver protein K02282 cpaE; pilus assembly protein CpaE D Dred_2116 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D Dred_0825 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D Dred_0944 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D Dred_0954 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D Dred_0803 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D Dred_2117 type II secretion system protein K12510 tadB; tight adherence protein B D Dred_2118 type II secretion system protein K12511 tadC; tight adherence protein C D Dred_2110 Flp/Fap pilin component K02651 flp; pilus assembly protein Flp/PilA D Dred_0714 protein of unknown function YGGT K02221 yggT; YggT family protein D Dred_2512 competence protein ComEA helix-hairpin-helix repeat protein K02237 comEA; competence protein ComEA D Dred_3161 CMP/dCMP deaminase, zinc-binding protein K01493 comEB; dCMP deaminase [EC:3.5.4.12] D Dred_2510 DNA internalization-related competence protein ComEC/Rec2 K02238 comEC; competence protein ComEC D Dred_2574 beta-lactamase domain protein K02238 comEC; competence protein ComEC D Dred_3143 copper amine oxidase domain protein K02238 comEC; competence protein ComEC D Dred_1799 conserved hypothetical protein K02241 comFB; competence protein ComFB D Dred_2392 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D Dred_2393 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D Dred_0267 flagellar biosynthesis K04061 flhB2; flagellar biosynthesis protein D Dred_2408 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D Dred_2406 Flagellar biosynthesis/type III secretory pathway protein-like protein K02411 fliH; flagellar assembly protein FliH D Dred_2405 type III secretion system ATPase, FliI/YscN K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D Dred_2398 surface presentation of antigens (SPOA) protein K02417 fliN; flagellar motor switch protein FliN D Dred_2380 CheC, inhibitor of MCP methylation K02417 fliN; flagellar motor switch protein FliN D Dred_1087 CheC, inhibitor of MCP methylation K02417 fliN; flagellar motor switch protein FliN D Dred_2397 hypothetical protein K02418 fliO; flagellar protein FliO/FliZ D Dred_2396 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D Dred_2395 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D Dred_2394 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D Dred_0843 TRAG family protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8] D Dred_0976 TRAG family protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8] D Dred_0931 conserved hypothetical protein K12063 traC; conjugal transfer ATP-binding protein TraC D Dred_3078 protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D Dred_1669 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D Dred_0201 protein translocase subunit secE/sec61 gamma K03073 secE; preprotein translocase subunit SecE D Dred_1670 protein translocase subunit secF K03074 secF; preprotein translocase subunit SecF D Dred_2986 protein translocase subunit secG K03075 secG; preprotein translocase subunit SecG D Dred_0235 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY D Dred_2056 signal recognition particle subunit FFH/SRP54 (srp54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D Dred_2067 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D Dred_1667 protein translocase subunit yajC K03210 yajC; preprotein translocase subunit YajC D Dred_3326 protein translocase subunit yidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D Dred_1112 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA D Dred_1508 sec-independent translocation protein mttA/Hcf106 K03116 tatA; sec-independent protein translocase protein TatA D Dred_1118 Sec-independent protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC C 02042 Bacterial toxins [BR:drm02042] D Dred_1580 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family D Dred_0422 channel protein, hemolysin III family K11068 hlyIII; hemolysin III D Dred_2741 phospholipase C zinc-binding protein K01114 plc; phospholipase C [EC:3.1.4.3] C 02022 Two-component system [BR:drm02022] D Dred_0708 PAS/PAC sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D Dred_0707 two component transcriptional regulator, winged helix family K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP D Dred_2641 two component transcriptional regulator, winged helix family K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP D Dred_1842 histidine kinase K07651 resE; two-component system, OmpR family, sensor histidine kinase ResE [EC:2.7.13.3] D Dred_1903 two component transcriptional regulator, winged helix family K07775 resD; two-component system, OmpR family, response regulator ResD D Dred_2120 putative methyl-accepting chemotaxis sensory transducer K07652 vicK; two-component system, OmpR family, sensor histidine kinase VicK [EC:2.7.13.3] D Dred_0324 integral membrane sensor signal transduction histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D Dred_0760 integral membrane sensor signal transduction histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3] D Dred_0323 two component transcriptional regulator, winged helix family K02483 K02483; two-component system, OmpR family, response regulator D Dred_2107 histidine kinase K07777 degS; two-component system, NarL family, sensor histidine kinase DegS [EC:2.7.13.3] D Dred_2303 response regulator receiver protein K11624 ydfI; two-component system, NarL family, response regulator YdfI D Dred_2108 two component transcriptional regulator, LuxR family K02479 K02479; two-component system, NarL family, response regulator D Dred_1745 signal transduction histidine kinase, nitrogen specific, NtrB K07698 kinC; two-component system, sporulation sensor kinase C [EC:2.7.13.3] D Dred_3094 histidine kinase K07698 kinC; two-component system, sporulation sensor kinase C [EC:2.7.13.3] D Dred_1525 PAS/PAC sensor signal transduction histidine kinase K13533 kinE; two-component system, sporulation sensor kinase E [EC:2.7.13.3] D Dred_2293 GAF sensor signal transduction histidine kinase K13533 kinE; two-component system, sporulation sensor kinase E [EC:2.7.13.3] D Dred_2304 multi-sensor signal transduction histidine kinase K13533 kinE; two-component system, sporulation sensor kinase E [EC:2.7.13.3] D Dred_3178 response regulator receiver protein K02490 spo0F; two-component system, response regulator, stage 0 sporulation protein F D Dred_2891 response regulator receiver protein K02490 spo0F; two-component system, response regulator, stage 0 sporulation protein F D Dred_1086 response regulator receiver protein K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A D Dred_2958 signal transduction histidine kinase, LytS K07704 lytS; two-component system, LytTR family, sensor histidine kinase LytS [EC:2.7.13.3] D Dred_2957 response regulator receiver protein K07705 lytT; two-component system, LytTR family, response regulator LytT D Dred_1311 PAS/PAC sensor signal transduction histidine kinase K07710 atoS; two-component system, NtrC family, sensor histidine kinase AtoS [EC:2.7.13.3] D Dred_1312 two component, sigma54 specific, transcriptional regulator, Fis family K07714 atoC; two-component system, NtrC family, response regulator AtoC D Dred_2001 two component, sigma54 specific, transcriptional regulator, Fis family K07714 atoC; two-component system, NtrC family, response regulator AtoC D Dred_1500 GAF sensor signal transduction histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3] D Dred_2275 GAF sensor signal transduction histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3] D Dred_1511 integral membrane sensor signal transduction histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3] D Dred_1510 two component, sigma54 specific, transcriptional regulator, Fis family K02481 flgR; two-component system, NtrC family, response regulator D Dred_2274 two component, sigma54 specific, transcriptional regulator, Fis family K02481 flgR; two-component system, NtrC family, response regulator D Dred_1267 integral membrane sensor hybrid histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Dred_2440 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Dred_2382 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Dred_2439 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D Dred_3262 two component transcriptional regulator, AraC family K07720 yesN; two-component system, response regulator YesN D Dred_1292 signal transduction histidine kinase K00936 pdtaS; two-component system, sensor histidine kinase PdtaS [EC:2.7.13.3] D Dred_2864 transcriptional regulator, Fis family K22010 pdtaR; two-component system, response regulator PdtaR D Dred_2808 response regulator receiver and ANTAR domain protein K22010 pdtaR; two-component system, response regulator PdtaR D Dred_1289 response regulator receiver and ANTAR domain protein K22010 pdtaR; two-component system, response regulator PdtaR D Dred_2811 response regulator receiver and ANTAR domain protein K22010 pdtaR; two-component system, response regulator PdtaR D Dred_1293 response regulator receiver protein K22010 pdtaR; two-component system, response regulator PdtaR C 02035 Bacterial motility proteins [BR:drm02035] D Dred_1267 integral membrane sensor hybrid histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Dred_2440 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D Dred_2154 putative CheW protein K03408 cheW; purine-binding chemotaxis protein CheW D Dred_2441 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW D Dred_1476 CheX protein (uncharacterized ORF in chemotaxis operon) K03409 cheX; chemotaxis protein CheX D Dred_2383 CheC, inhibitor of MCP methylation K03410 cheC; chemotaxis protein CheC D Dred_2385 CheD K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44] D Dred_1268 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D Dred_2384 Protein-glutamate O-methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D Dred_2439 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D Dred_2382 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D Dred_1181 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dred_0384 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dred_0620 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dred_1534 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dred_1693 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dred_2857 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dred_1557 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dred_2263 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dred_2461 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dred_2737 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dred_2760 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dred_2636 methyl-accepting chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein D Dred_1430 methyl-accepting chemotaxis sensory transducer K06595 hemAT; heam-based aerotactic trancducer D Dred_2406 Flagellar biosynthesis/type III secretory pathway protein-like protein K02411 fliH; flagellar assembly protein FliH D Dred_2405 type III secretion system ATPase, FliI/YscN K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D Dred_2404 flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ D Dred_2397 hypothetical protein K02418 fliO; flagellar protein FliO/FliZ D Dred_2396 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D Dred_2395 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D Dred_2394 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D Dred_2392 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D Dred_2393 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D Dred_2407 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D Dred_2381 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D Dred_2398 surface presentation of antigens (SPOA) protein K02417 fliN; flagellar motor switch protein FliN D Dred_2380 CheC, inhibitor of MCP methylation K02417 fliN; flagellar motor switch protein FliN D Dred_1087 CheC, inhibitor of MCP methylation K02417 fliN; flagellar motor switch protein FliN D Dred_2408 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D Dred_2399 flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL D Dred_2409 flagellar hook-basal body complex subunit FliE K02408 fliE; flagellar hook-basal body complex protein FliE D Dred_2403 flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK D Dred_2411 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D Dred_2410 flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D Dred_2402 flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD D Dred_2387 protein of unknown function DUF1078 domain protein K02391 flgF; flagellar basal-body rod protein FlgF D Dred_2386 protein of unknown function DUF1078 domain protein K02392 flgG; flagellar basal-body rod protein FlgG D Dred_2400 protein of unknown function DUF1078 domain protein K02390 flgE; flagellar hook protein FlgE D Dred_2436 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D Dred_2435 flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL D Dred_2429 flagellin domain protein K02406 fliC; flagellin D Dred_2433 flagellin domain protein K02406 fliC; flagellin D Dred_2418 flagellar hook-associated 2 domain protein K02407 fliD; flagellar hook-associated protein 2 D Dred_2415 flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS D Dred_2388 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA D Dred_0355 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Dred_2443 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA D Dred_0354 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Dred_2442 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB D Dred_2416 protein of unknown function DUF180 K13626 fliW; flagellar assembly factor FliW D Dred_2438 putative anti-sigma-28 factor, FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM D Dred_2413 flagellar protein FlaG protein K06603 flaG; flagellar protein FlaG D Dred_2391 GTP-binding signal recognition particle SRP54, G-domain protein K02404 flhF; flagellar biosynthesis protein FlhF D Dred_2390 Cobyrinic acid a,c-diamide synthase K04562 flhG; flagellar biosynthesis protein FlhG D Dred_1035 pilus retraction ATPase PilT K02669 pilT; twitching motility protein PilT D Dred_1042 hypothetical protein K02650 pilA; type IV pilus assembly protein PilA D Dred_1034 type II secretion system protein E (GspE) K02652 pilB; type IV pilus assembly protein PilB D Dred_1023 type II secretion system protein K02653 pilC; type IV pilus assembly protein PilC D Dred_1036 type II secretion system protein K02653 pilC; type IV pilus assembly protein PilC D Dred_1047 type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D Dred_1041 hypothetical protein K02666 pilQ; type IV pilus assembly protein PilQ D Dred_1039 hypothetical protein K02664 pilO; type IV pilus assembly protein PilO D Dred_1031 hypothetical protein K02664 pilO; type IV pilus assembly protein PilO D Dred_1038 Fimbrial assembly family protein K02663 pilN; type IV pilus assembly protein PilN D Dred_1030 Fimbrial assembly family protein K02663 pilN; type IV pilus assembly protein PilN D Dred_1037 type IV pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM D Dred_1029 type IV pilus assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM D Dred_2110 Flp/Fap pilin component K02651 flp; pilus assembly protein Flp/PilA D Dred_2111 peptidase A24A, prepilin type IV K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D Dred_2114 SAF domain protein K02279 cpaB; pilus assembly protein CpaB D Dred_0824 SAF domain protein K02279 cpaB; pilus assembly protein CpaB D Dred_0953 hypothetical protein K02279 cpaB; pilus assembly protein CpaB D Dred_2115 response regulator receiver protein K02282 cpaE; pilus assembly protein CpaE D Dred_2116 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D Dred_0825 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D Dred_0944 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D Dred_0954 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D Dred_0803 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:drm04812] D Dred_0269 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B K06990 MEMO1; MEMO1 family protein D Dred_2548 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D Dred_3144 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D Dred_0684 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D Dred_0683 cell division protein FtsA K03590 ftsA; cell division protein FtsA D Dred_1900 septum site-determining protein MinC K03610 minC; septum site-determining protein MinC D Dred_2544 septum site-determining protein MinC K03610 minC; septum site-determining protein MinC D Dred_2543 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D Dred_0800 ATPases involved in chromosome partitioning-like protein K03609 minD; septum site-determining protein MinD D Dred_2542 cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor D Dred_3321 chromosome segregation ATPase K03496 parA; chromosome partitioning protein D Dred_0892 Cobyrinic acid a,c-diamide synthase K03496 parA; chromosome partitioning protein D Dred_3320 chromosome segregation DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Dred_0893 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein C 04147 Exosome [BR:drm04147] D Dred_2987 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Dred_0136 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D Dred_2991 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Dred_0132 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D Dred_2990 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D Dred_0133 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D Dred_0381 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Dred_2312 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D Dred_1915 dipeptidase, Metallo peptidase, MEROPS family M19 K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D Dred_2873 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D Dred_2496 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D Dred_3115 Heat shock protein 70 K04043 dnaK; molecular chaperone DnaK D Dred_2902 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D Dred_1906 inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D Dred_0199 translation elongation factor Tu K02358 tuf; elongation factor Tu D Dred_0213 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu D Dred_2491 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D Dred_2797 L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D Dred_2963 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D Dred_1491 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dred_1784 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dred_1892 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dred_0400 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D Dred_2063 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D Dred_1718 Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D Dred_0732 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D Dred_0278 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D Dred_0277 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D Dred_0261 dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2] D Dred_1453 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] D Dred_2845 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D Dred_2806 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Dred_2807 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Dred_2810 Glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D Dred_2160 Porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D Dred_0014 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D Dred_2362 phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D Dred_0365 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dred_0608 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dred_2832 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D Dred_1779 electron transfer flavoprotein, alpha subunit K03522 fixB; electron transfer flavoprotein alpha subunit D Dred_0573 electron transfer flavoprotein, alpha subunit K03522 fixB; electron transfer flavoprotein alpha subunit D Dred_1539 electron transfer flavoprotein beta-subunit K03522 fixB; electron transfer flavoprotein alpha subunit D Dred_2989 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D Dred_0134 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] C 02048 Prokaryotic defense system [BR:drm02048] D Dred_1007 CRISPR-associated protein, Cas1 family K15342 cas1; CRISP-associated protein Cas1 D Dred_0541 CRISPR-associated protein, Cas1 family K15342 cas1; CRISP-associated protein Cas1 D Dred_1625 CRISPR-associated protein, Cas1 family / CRISPR-associated exonuclease, Cas4 family K15342 cas1; CRISP-associated protein Cas1 D Dred_1008 CRISPR-associated protein, Cas2 family K09951 cas2; CRISPR-associated protein Cas2 D Dred_1626 CRISPR-associated protein, Cas2 family K09951 cas2; CRISPR-associated protein Cas2 D Dred_0542 CRISPR-associated protein, Cas2 family K09951 cas2; CRISPR-associated protein Cas2 D Dred_1002 CRISPR-associated helicase, Cas3 family K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4] D Dred_0539 CRISPR-associated helicase, Cas3 family K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4] D Dred_0540 CRISPR-associated exonuclease, Cas4 family K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1] D Dred_1006 CRISPR-associated exonuclease, Cas4 family K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1] D Dred_0535 CRISPR-associated protein, Cas6 family K19091 cas6; CRISPR-associated endoribonuclease Cas6 [EC:3.1.-.-] D Dred_1632 CRISPR-associated protein Cas6 K19091 cas6; CRISPR-associated endoribonuclease Cas6 [EC:3.1.-.-] D Dred_0536 hypothetical protein K19114 csh1; CRISPR-associated protein Csh1 D Dred_0537 CRISPR-associated protein, Csh2 family K19115 csh2; CRISPR-associated protein Csh2 D Dred_0538 CRISPR-associated protein, Cas5h family K19116 cas5h; CRISPR-associated protein Cas5h D Dred_1004 CRISPR-associated protein, Csd1 family K19117 csd1; CRISPR-associated protein Csd1 D Dred_1005 CRISPR-associated protein, Csd2 family K19118 csd2; CRISPR-associated protein Csd2 D Dred_1003 CRISPR-associated protein, Csd5d family K19119 cas5d; CRISPR-associated protein Cas5d D Dred_1627 CRISPR-associated protein, Csm1 family K07016 csm1; CRISPR-associated protein Csm1 D Dred_1628 CRISPR-associated protein, Csm2 family K19138 csm2; CRISPR-associated protein Csm2 D Dred_1629 CRISPR-associated protein, Csm3 family K09002 csm3; CRISPR-associated protein Csm3 D Dred_1630 CRISPR-associated protein, Csm4 family K19139 csm4; CRISPR-associated protein Csm4 D Dred_0878 D12 class N6 adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] D Dred_0515 type III restriction enzyme, res subunit K01156 res; type III restriction enzyme [EC:3.1.21.5] D Dred_2246 type III restriction enzyme, res subunit K01156 res; type III restriction enzyme [EC:3.1.21.5] D Dred_0868 type III restriction enzyme, res subunit K01156 res; type III restriction enzyme [EC:3.1.21.5] D Dred_0514 DNA methylase N-4/N-6 domain protein K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72] D Dred_0869 DNA methylase N-4/N-6 domain protein K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72] D Dred_2247 DNA methylase N-4/N-6 domain protein K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72] D Dred_2609 phage related protein K07451 mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-] D Dred_0025 ATPase associated with various cellular activities, AAA_5 K07452 mcrB; 5-methylcytosine-specific restriction enzyme B [EC:3.1.21.-] D Dred_0026 McrBC 5-methylcytosine restriction system component-like protein K19147 mcrC; 5-methylcytosine-specific restriction enzyme subunit McrC D Dred_2894 transcriptional modulator of MazE/toxin, MazF K07171 mazF; mRNA interferase MazF [EC:3.1.-.-] D Dred_2895 transcriptional regulator, CopG family K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI D Dred_1339 phage shock protein C, PspC K03973 pspC; phage shock protein C D Dred_3007 death-on-curing family protein K07341 doc; death on curing protein D Dred_3006 prevent-host-death family protein K19165 phd; antitoxin Phd D Dred_0684 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D Dred_2548 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D Dred_3144 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D Dred_0764 aminotransferase, class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D Dred_1001 aminotransferase, class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels [BR:drm04040] C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules [BR:drm04090] C 01504 Antimicrobial resistance genes [BR:drm01504] D Dred_1645 transporter, NhaC family K18218 tet35; tetracycline resistance efflux pump D Dred_2954 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system D Dred_3141 hypothetical protein K12340 tolC; outer membrane protein C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:drm00537] D Dred_1915 dipeptidase, Metallo peptidase, MEROPS family M19 K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:drm03100] D Dred_R0054 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Dred_R0003 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Dred_R0016 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D Dred_R0010 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Dred_R0084 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Dred_R0008 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Dred_R0009 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Dred_R0086 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D Dred_R0075 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Dred_R0019 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Dred_R0021 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D Dred_R0035 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Dred_R0043 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Dred_R0091 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D Dred_R0038 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D Dred_R0041 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D Dred_R0066 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Dred_R0081 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Dred_R0028 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D Dred_R0064 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Dred_R0097 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Dred_R0073 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Dred_R0099 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D Dred_R0037 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Dred_R0040 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Dred_R0042 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Dred_R0070 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Dred_R0085 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Dred_R0096 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D Dred_R0082 tRNA-His K14226 tRNA-His; tRNA His D Dred_R0002 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Dred_R0015 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D Dred_R0044 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Dred_R0079 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Dred_R0071 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Dred_R0055 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Dred_R0067 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Dred_R0068 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D Dred_R0080 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Dred_R0100 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Dred_R0098 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Dred_R0029 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Dred_R0030 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D Dred_R0026 tRNA-Met K14230 tRNA-Met; tRNA Met D Dred_R0024 tRNA-Met K14230 tRNA-Met; tRNA Met D Dred_R0034 tRNA-Met K14230 tRNA-Met; tRNA Met D Dred_R0083 tRNA-Met K14230 tRNA-Met; tRNA Met D Dred_R0074 tRNA-Met K14230 tRNA-Met; tRNA Met D Dred_R0036 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D Dred_R0039 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D Dred_R0063 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Dred_R0062 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Dred_R0045 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Dred_R0046 pseudogene K14232 tRNA-Pro; tRNA Pro D Dred_R0056 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D Dred_R0006 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Dred_R0012 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Dred_R0011 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Dred_R0007 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D Dred_R0025 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Dred_R0088 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Dred_R0022 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Dred_R0087 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D Dred_R0058 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D Dred_R0023 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Dred_R0065 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D Dred_R0072 tRNA-Val K14237 tRNA-Val; tRNA Val D Dred_R0090 tRNA-Val K14237 tRNA-Val; tRNA Val D Dred_R0089 tRNA-Val K14237 tRNA-Val; tRNA Val D Dred_R0057 tRNA-Val K14237 tRNA-Val; tRNA Val D Dred_R0069 tRNA-Sec K14238 tRNA-Sec; tRNA Sec D Dred_R0014 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Dred_R0031 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Dred_R0078 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Dred_R0001 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Dred_R0094 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Dred_R0047 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Dred_R0050 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Dred_R0061 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D Dred_R0032 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Dred_R0077 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Dred_R0051 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Dred_R0060 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Dred_R0048 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Dred_R0093 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Dred_R0004 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Dred_R0017 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D Dred_R0005 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Dred_R0033 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Dred_R0049 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Dred_R0052 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Dred_R0092 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Dred_R0076 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Dred_R0018 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Dred_R0020 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Dred_R0027 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Dred_R0059 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D Dred_R0013 ffs; SRP RNA; RNA component of signal recognition particle K01983 ffs; SRP RNA D Dred_R0053 RNase P K01978 rnpB; M1 RNA D Dred_R0095 tmRNA as predicted by Rfam (RF00023), score 130.01 K15035 ssrA; transfer-messenger RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D Dred_0173 Shikimate/quinate 5-dehydrogenase K14330 K14330; fatty aldehyde-generating acyl-ACP reductase [EC:1.2.1.80] D Dred_2773 (2Fe-2S)-binding domain protein K03518 coxS; aerobic carbon-monoxide dehydrogenase small subunit [EC:1.2.5.3] D Dred_1503 (2Fe-2S)-binding domain protein K03518 coxS; aerobic carbon-monoxide dehydrogenase small subunit [EC:1.2.5.3] D Dred_2775 (2Fe-2S)-binding domain protein K03518 coxS; aerobic carbon-monoxide dehydrogenase small subunit [EC:1.2.5.3] D Dred_3189 Indolepyruvate ferredoxin oxidoreductase K00179 iorA; indolepyruvate ferredoxin oxidoreductase, alpha subunit [EC:1.2.7.8] D Dred_3188 Indolepyruvate ferredoxin oxidoreductase K00180 iorB; indolepyruvate ferredoxin oxidoreductase, beta subunit [EC:1.2.7.8] D Dred_0570 acyl-CoA dehydrogenase domain protein K08297 caiA; crotonobetainyl-CoA dehydrogenase [EC:1.3.8.13] D Dred_0574 FAD dependent oxidoreductase K00313 fixC; electron transfer flavoprotein-quinone oxidoreductase [EC:1.5.5.-] D Dred_1540 FAD dependent oxidoreductase K00313 fixC; electron transfer flavoprotein-quinone oxidoreductase [EC:1.5.5.-] D Dred_2294 catalase K07217 ydbD; manganese catalase [EC:1.11.1.6] D Dred_1651 NAD(P)-dependent iron-only hydrogenase catalytic subunit K18332 hndD; NADP-reducing hydrogenase subunit HndD [EC:1.12.1.3] D Dred_0463 hydrogenase, Fe-only K18332 hndD; NADP-reducing hydrogenase subunit HndD [EC:1.12.1.3] D Dred_1070 sulfide dehydrogenase (flavoprotein) subunit SudB K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D Dred_0694 ribonucleoside-triphosphate reductase class III activase subunit K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4] D Dred_0038 pyruvate formate-lyase activating enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D Dred_0270 Radical SAM domain protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D Dred_2966 glycyl-radical enzyme activating protein family K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D Dred_0606 hypothetical protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D Dred_3277 glycyl-radical enzyme activating protein family K20037 cutD; choline trimethylamine-lyase activating enzyme [EC:1.97.1.-] D Dred_2939 putative RNA methylase K07444 ypsC; putative N6-adenine-specific DNA methylase [EC:2.1.1.-] D Dred_0739 beta-lysine acetyltransferase K21935 ablB; beta-lysine N6-acetyltransferase [EC:2.3.1.264] D Dred_2323 glycosyl transferase, group 1 K00754 bshA; L-malate glycosyltransferase [EC:2.4.1.-] D Dred_0149 conserved hypothetical protein K06898 larB; pyridinium-3,5-biscarboxylic acid mononucleotide synthase [EC:2.5.1.143] D Dred_2716 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D Dred_0905 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D Dred_1271 Dak phosphatase K07030 fakA; fatty acid kinase [EC:2.7.2.18] D Dred_2470 protein of unknown function DUF299 K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33] D Dred_1191 DNA-directed DNA polymerase K02334 dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7] D Dred_1227 RNA-directed DNA polymerase (Reverse transcriptase) K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49] D Dred_0183 protein of unknown function DUF147 K07067 disA; diadenylate cyclase [EC:2.7.7.85] D Dred_0292 protein of unknown function DUF147 K18672 dacA; diadenylate cyclase [EC:2.7.7.85] D Dred_1104 putative anti-sigma regulatory factor, serine/threonine protein kinase K06379 spoIIAB; stage II sporulation protein AB (anti-sigma F factor) [EC:2.7.11.1] D Dred_0179 ATP:guanido phosphotransferase K19405 mcsB; protein arginine kinase [EC:2.7.14.1] D Dred_0571 L-carnitine dehydratase/bile acid-inducible protein F K08298 caiB; L-carnitine CoA-transferase [EC:2.8.3.21] D Dred_2634 Appr-1-p processing domain protein K23518 MACROD; O-acetyl-ADP-ribose deacetylase [EC:3.1.1.106] D Dred_0128 Thioesterase superfamily K18700 flK; fluoroacetyl-CoA thioesterase [EC:3.1.2.29] D Dred_0597 thioesterase superfamily protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D Dred_0124 Phosphoprotein phosphatase K06382 spoIIE; stage II sporulation protein E [EC:3.1.3.16] D Dred_2997 PHP C-terminal domain protein K01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48] D Dred_1914 PHP C-terminal domain protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97] D Dred_1017 HAD superfamily (subfamily IIIA) phosphatase, TIGR01668 K07015 yqeG; putative phosphatase [EC:3.1.3.-] D Dred_2483 metal dependent phosphohydrolase K07037 pgpH; cyclic-di-AMP phosphodiesterase PgpH [EC:3.1.4.-] D Dred_0066 hydrolase, TatD family K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D Dred_0263 N-acyl-D-amino-acid deacylase K06015 E3.5.1.81; N-acyl-D-amino-acid deacylase [EC:3.5.1.81] D Dred_1591 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D Dred_1704 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D Dred_3051 polysaccharide deacetylase K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104] D Dred_0643 polysaccharide deacetylase K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104] D Dred_2324 LmbE family protein K01463 bshB1; N-acetylglucosamine malate deacetylase 1 [EC:3.5.1.-] D Dred_1963 polysaccharide deacetylase K01567 pdaA; peptidoglycan-N-acetylmuramic acid deacetylase [EC:3.5.1.-] D Dred_0412 endoribonuclease L-PSP K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] D Dred_0614 endoribonuclease L-PSP K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] D Dred_2343 endoribonuclease L-PSP K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] D Dred_0317 putative endoribonuclease L-PSP K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] D Dred_0264 putative endoribonuclease L-PSP K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] D Dred_3164 protein tyrosine phosphatase K20201 ywlE; protein arginine phosphatase [EC:3.9.1.2] D Dred_0691 spore photoproduct lyase K03716 splB; spore photoproduct lyase [EC:4.1.99.14] D Dred_2867 carbohydrate kinase, YjeF related protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6] D Dred_0259 diaminopropionate ammonia-lyase K01751 E4.3.1.15; diaminopropionate ammonia-lyase [EC:4.3.1.15] D Dred_3278 Formate C-acetyltransferase K20038 cutC; choline trimethylamine-lyase [EC:4.3.99.4] D Dred_0151 PP-loop domain protein K06864 larE; pyridinium-3,5-biscarboxylic acid mononucleotide sulfurtransferase [EC:4.4.1.37] D Dred_0150 protein of unknown function DUF111 K09121 larC; pyridinium-3,5-bisthiocarboxylic acid mononucleotide nickel chelatase [EC:4.99.1.12] D Dred_3317 protein of unknown function DUF111 K09121 larC; pyridinium-3,5-bisthiocarboxylic acid mononucleotide nickel chelatase [EC:4.99.1.12] D Dred_2148 glutamate 2,3-aminomutase K19814 eam; glutamate 2,3-aminomutase [EC:5.4.3.9] D Dred_1279 putative CoA-substrate-specific enzyme activase K23876 hgdC; (R)-2-hydroxyacyl-CoA dehydratese activating ATPase [EC:5.6.1.9] D Dred_2687 putative CoA-substrate-specific enzyme activase K23876 hgdC; (R)-2-hydroxyacyl-CoA dehydratese activating ATPase [EC:5.6.1.9] D Dred_0576 AMP-dependent synthetase and ligase K02182 caiC; carnitine-CoA ligase [EC:6.2.1.48] D Dred_1692 ATPase, P-type (transporting), HAD superfamily, subfamily IC K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10] D Dred_1527 heavy metal translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21] C 99981 Carbohydrate metabolism D Dred_2531 sugar fermentation stimulation protein K06206 sfsA; sugar fermentation stimulation protein A D Dred_1256 putative signal-transduction protein with CBS domains K04767 acuB; acetoin utilization protein AcuB D Dred_0689 protein of unknown function DUF162 K00782 lldG; L-lactate dehydrogenase complex protein LldG D Dred_0432 protein of unknown function DUF162 K00782 lldG; L-lactate dehydrogenase complex protein LldG D Dred_1174 conserved hypothetical protein K22136 bshC; bacillithiol synthase C 99982 Energy metabolism D Dred_2476 Rubrerythrin K19824 fprB; rubrerythrin D Dred_2876 formate dehydrogenase family accessory protein FdhD K02379 fdhD; FdhD protein D Dred_2203 4Fe-4S ferredoxin, iron-sulfur binding domain protein K05337 fer; ferredoxin D Dred_0765 nitrogen-fixing NifU domain protein K04488 iscU; nitrogen fixation protein NifU and related proteins D Dred_0653 nitrogen-fixing NifU domain protein K04488 iscU; nitrogen fixation protein NifU and related proteins D Dred_1422 ATPase associated with various cellular activities, AAA_5 K04748 norQ; nitric oxide reductase NorQ protein D Dred_2942 beta-lactamase domain protein K12264 norV; anaerobic nitric oxide reductase flavorubredoxin D Dred_2814 Radical SAM domain protein K02585 nifB; nitrogen fixation protein NifB D Dred_2815 Nitrogenase K02592 nifN; nitrogenase molybdenum-iron protein NifN D Dred_2816 nitrogenase MoFe cofactor biosynthesis protein NifE K02587 nifE; nitrogenase molybdenum-cofactor synthesis protein NifE D Dred_0638 putative adenylylsulfate reductase-associated electron transfer protein QmoA K16885 qmoA; quinone-modifying oxidoreductase, subunit QmoA D Dred_0639 putative adenylylsulfate reductase-associated electron transfer protein QmoB K16886 qmoB; quinone-modifying oxidoreductase, subunit QmoB D Dred_0490 4Fe-4S ferredoxin, iron-sulfur binding domain protein K02574 napH; ferredoxin-type protein NapH D Dred_1778 electron transfer flavoprotein beta-subunit K03521 fixA; electron transfer flavoprotein beta subunit D Dred_0572 electron transfer flavoprotein beta-subunit K03521 fixA; electron transfer flavoprotein beta subunit D Dred_1538 electron transfer flavoprotein beta-subunit K03521 fixA; electron transfer flavoprotein beta subunit D Dred_1541 4Fe-4S ferredoxin, iron-sulfur binding domain protein K03855 fixX; ferredoxin like protein D Dred_0575 conserved hypothetical protein K03855 fixX; ferredoxin like protein D Dred_3197 DsrC family protein K23077 dsrC; dissimilatory sulfite reductase related protein C 99983 Lipid metabolism D Dred_3318 degV family protein K25232 fakB; fatty acid kinase fatty acid binding subunit C 99984 Nucleotide metabolism C 99985 Amino acid metabolism D Dred_3273 ethanolamine utilization protein EutJ family protein K04024 eutJ; ethanolamine utilization protein EutJ D Dred_1298 microcompartments protein K04026 eutL; ethanolamine utilization protein EutL D Dred_1291 ethanolamine utilization protein eutP K04029 eutP; ethanolamine utilization protein EutP D Dred_3275 conserved hypothetical protein K04029 eutP; ethanolamine utilization protein EutP D Dred_1304 Ethanolamine utilization EutQ family protein K04030 eutQ; ethanolamine utilization protein EutQ D Dred_3268 transcriptional regulator K04030 eutQ; ethanolamine utilization protein EutQ D Dred_3276 microcompartments protein K04031 eutS; ethanolamine utilization protein EutS D Dred_1290 microcompartments protein K04031 eutS; ethanolamine utilization protein EutS D Dred_0712 alanine racemase domain protein K06997 yggS; PLP dependent protein C 99986 Glycan metabolism D Dred_2102 cell wall hydrolase, SleB K01449 cwlJ; cell wall hydrolase D Dred_1335 cell wall hydrolase, SleB K01449 cwlJ; cell wall hydrolase C 99987 Cofactor metabolism D Dred_3270 Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit K27271 pduS; cobalamin reductase D Dred_1302 Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit K27271 pduS; cobalamin reductase C 99988 Secondary metabolism C 99999 Others B B 09192 Unclassified: genetic information processing C 99973 Transcription D Dred_0036 cold-shock DNA-binding protein family K03704 cspA; cold shock protein D Dred_3080 cold-shock DNA-binding protein family K03704 cspA; cold shock protein D Dred_3245 cold-shock DNA-binding protein family K03704 cspA; cold shock protein D Dred_2178 cold-shock DNA-binding protein family K03704 cspA; cold shock protein D Dred_2820 nitrogen regulatory protein P-II K02589 nifHD1; nitrogen regulatory protein PII 1 D Dred_2819 nitrogen regulatory protein P-II K02590 nifHD2; nitrogen regulatory protein PII 2 D Dred_1124 RNA binding S1 domain protein K06959 tex; protein Tex D Dred_1699 protein of unknown function DUF370 K09777 remA; extracellular matrix regulatory protein A D Dred_0005 conserved hypothetical protein K24648 remB; extracellular matrix regulatory protein B C 99974 Translation D Dred_0122 RNA binding S1 domain protein K07571 K07571; S1 RNA binding domain protein D Dred_0705 beta-lactamase domain protein K07576 K07576; metallo-beta-lactamase family protein C 99975 Protein processing D Dred_0178 UvrB/UvrC protein K19411 mcsA; protein arginine kinase activator D Dred_2563 trigger factor K03545 tig; trigger factor D Dred_1117 Uncharacterized protein involved in formate dehydrogenase formation-like protein K02380 fdhE; FdhE protein D Dred_2984 SsrA-binding protein K03664 smpB; SsrA-binding protein D Dred_2023 Mg chelatase, subunit ChlI K07391 comM; magnesium chelatase family protein D Dred_3008 magnesium chelatase, ChlI subunit K07391 comM; magnesium chelatase family protein D Dred_2833 OsmC family protein K07397 yhfA; putative redox protein D Dred_0702 ResB family protein K07399 resB; cytochrome c biogenesis protein D Dred_0314 biotin/lipoyl attachment K07402 xdhC; xanthine dehydrogenase accessory factor D Dred_0315 predicted sulfurylase large subunit, molybdopterin cytosine dinucleotide biosynthesis K07402 xdhC; xanthine dehydrogenase accessory factor C 99976 Replication and repair D Dred_2549 DNA replication and repair protein RadC K03630 radC; DNA repair protein RadC D Dred_0983 DNA replication and repair protein RadC K03630 radC; DNA repair protein RadC D Dred_0870 ATP-dependent endonuclease of the OLD family-like protein K07459 ybjD; putative ATP-dependent endonuclease of the OLD family D Dred_2035 protein of unknown function UPF0102 K07460 yraN; putative endonuclease D Dred_1435 Excinuclease ABC, C subunit domain protein K07461 K07461; putative endonuclease D Dred_1985 DNA protecting protein DprA K04096 smf; DNA processing protein D Dred_1928 Rossmann fold nucleotide-binding protein involved in DNA uptake-like protein K04096 smf; DNA processing protein D Dred_2103 DNA replication protein DnaD K02086 dnaD; DNA replication protein D Dred_1429 Recombination protein MgsA K07478 ycaJ; putative ATPase D Dred_1196 virulence-associated E family protein K06919 K06919; putative DNA primase/helicase D Dred_2613 Superfamily II helicase and inactivated derivatives-like protein K06919 K06919; putative DNA primase/helicase D Dred_1014 transposase IS3/IS911 family protein K07483 K07483; transposase D Dred_2631 transposase IS3/IS911 family protein K07483 K07483; transposase D Dred_0866 transposase, IS204/IS1001/IS1096/IS1165 family protein K07485 K07485; transposase D Dred_0033 transposase IS116/IS110/IS902 family protein K07486 K07486; transposase D Dred_0034 transposase, IS111A/IS1328/IS1533 K07486 K07486; transposase D Dred_0876 transposase IS200-family protein K07491 rayT; REP-associated tyrosine transposase D Dred_1824 transposase, mutator type K07493 K07493; putative transposase D Dred_0877 transposase, IS605 OrfB family K07496 K07496; putative transposase D Dred_1013 Integrase, catalytic region K07497 K07497; putative transposase D Dred_0532 Integrase, catalytic region K07497 K07497; putative transposase D Dred_1010 Integrase, catalytic region K07497 K07497; putative transposase D Dred_3239 Integrase, catalytic region K07497 K07497; putative transposase D Dred_3025 Integrase, catalytic region K07497 K07497; putative transposase D Dred_1285 Integrase, catalytic region K07497 K07497; putative transposase D Dred_2257 Integrase, catalytic region K07497 K07497; putative transposase D Dred_3124 conserved hypothetical protein K07497 K07497; putative transposase D Dred_0305 Integrase, catalytic region K07497 K07497; putative transposase C 99979 Viral proteins C 99998 Others D Dred_0043 conserved hypothetical protein 103 K09747 ebfC; nucleoid-associated protein EbfC B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D Dred_1373 amino acid/polyamine/organocation transporter, APC superfamily K03293 TC.AAT; amino acid transporter, AAT family D Dred_3225 amino acid/polyamine/organocation transporter, APC superfamily K03293 TC.AAT; amino acid transporter, AAT family D Dred_2950 acriflavin resistance protein K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family D Dred_0623 amino acid/peptide transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family D Dred_2658 phosphate transporter K03306 TC.PIT; inorganic phosphate transporter, PiT family D Dred_3191 SSS sodium solute transporter superfamily K03307 TC.SSS; solute:Na+ symporter, SSS family D Dred_2834 Na+/solute symporter K03307 TC.SSS; solute:Na+ symporter, SSS family D Dred_1333 Na+/solute symporter K03307 TC.SSS; solute:Na+ symporter, SSS family D Dred_2742 sodium:neurotransmitter symporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family D Dred_1119 sodium:neurotransmitter symporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family D Dred_2211 sodium:neurotransmitter symporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family D Dred_3216 amino acid carrier protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D Dred_1608 amino acid carrier protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D Dred_0092 amino acid carrier protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D Dred_0457 Bile acid:sodium symporter K03453 TC.BASS; bile acid:Na+ symporter, BASS family D Dred_0262 permease for cytosine/purines, uracil, thiamine, allantoin K03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family C 99978 Cell growth D Dred_0045 hypothetical protein K06317 bofA; inhibitor of the pro-sigma K processing machinery D Dred_1498 spore coat protein (inner) K06330 cotH; spore coat protein H D Dred_2908 spore coat peptide assembly protein cotJB K06333 cotJB; spore coat protein JB D Dred_2909 manganese containing catalase K06334 cotJC; spore coat protein JC D Dred_3325 single-stranded nucleic acid binding R3H domain protein K06346 jag; spoIIIJ-associated protein D Dred_1140 nucleoside recognition domain protein K06373 spmA; spore maturation protein A D Dred_1141 nucleoside recognition domain protein K06374 spmB; spore maturation protein B D Dred_0420 SpoOM family protein K06377 spo0M; sporulation-control protein D Dred_1103 anti-sigma-factor antagonist K06378 spoIIAA; stage II sporulation protein AA (anti-sigma F factor antagonist) D Dred_1095 protein of unknown function DUF95, transmembrane K06384 spoIIM; stage II sporulation protein M D Dred_1156 Stage II sporulation P family protein K06385 spoIIP; stage II sporulation protein P D Dred_2503 Stage II sporulation P family protein K06385 spoIIP; stage II sporulation protein P D Dred_0458 pro-sigma-E processing factor spoIIR K06387 spoIIR; stage II sporulation protein R D Dred_1056 conserved hypothetical protein K06390 spoIIIAA; stage III sporulation protein AA D Dred_1057 stage III sporulation protein AB K06391 spoIIIAB; stage III sporulation protein AB D Dred_1058 Stage III sporulation AC family protein K06392 spoIIIAC; stage III sporulation protein AC D Dred_1059 putative sporulation protein K06393 spoIIIAD; stage III sporulation protein AD D Dred_1060 conserved hypothetical protein K06394 spoIIIAE; stage III sporulation protein AE D Dred_1061 hypothetical protein K06395 spoIIIAF; stage III sporulation protein AF D Dred_1062 conserved hypothetical protein K06396 spoIIIAG; stage III sporulation protein AG D Dred_1063 hypothetical protein K06397 spoIIIAH; stage III sporulation protein AH D Dred_1163 stage IV sporulation protein A K06398 spoIVA; stage IV sporulation protein A D Dred_0913 Resolvase, N-terminal domain protein K06400 spoIVCA; site-specific DNA recombinase D Dred_0898 Resolvase, N-terminal domain protein K06400 spoIVCA; site-specific DNA recombinase D Dred_1465 SpoVA protein K06405 spoVAC; stage V sporulation protein AC D Dred_1106 SpoVA protein K06405 spoVAC; stage V sporulation protein AC D Dred_1464 Stage V sporulation AD family protein K06406 spoVAD; stage V sporulation protein AD D Dred_1107 Stage V sporulation AD family protein K06406 spoVAD; stage V sporulation protein AD D Dred_1463 SpoVA protein K06407 spoVAE; stage V sporulation protein AE D Dred_1108 SpoVA protein K06407 spoVAE; stage V sporulation protein AE D Dred_1109 stage V sporulation protein AE, C-terminal region K06407 spoVAE; stage V sporulation protein AE D Dred_1110 GerA spore germination protein K06408 spoVAF; stage V sporulation protein AF D Dred_1943 FAD-dependent pyridine nucleotide-disulfide oxidoreductase K06410 spoVFA; dipicolinate synthase subunit A D Dred_1942 flavoprotein K06411 spoVFB; dipicolinate synthase subunit B D Dred_0098 SpoVG family protein K06412 spoVG; stage V sporulation protein G D Dred_1880 AAA ATPase, central domain protein K06413 spoVK; stage V sporulation protein K D Dred_2004 SpoVR family protein K06415 spoVR; stage V sporulation protein R D Dred_1916 Stage V sporulation protein S K06416 spoVS; stage V sporulation protein S D Dred_0468 small acid-soluble spore protein, alpha/beta type K06418 SASP-A; small acid-soluble spore protein A (major alpha-type SASP) D Dred_1322 small, acid-soluble spore protein, alpha/be K06423 sspF; small acid-soluble spore protein F (minor alpha/beta-type SASP) D Dred_1792 small acid-soluble spore protein (minor) K06434 tlp; small acid-soluble spore protein (thioredoxin-like protein) D Dred_0079 peptidase U57, YabG K06436 yabG; spore coat assemly protein D Dred_2485 putative stage IV sporulation YqfD K06438 yqfD; similar to stage IV sporulation protein D Dred_0054 GerA spore germination protein K06295 gerKA; spore germination protein KA D Dred_1732 GerA spore germination protein K06295 gerKA; spore germination protein KA D Dred_2663 GerA spore germination protein K06295 gerKA; spore germination protein KA D Dred_0053 spore germination B3 GerAC family protein K06297 gerKC; spore germination protein KC D Dred_1734 spore germination B3 GerAC family protein K06297 gerKC; spore germination protein KC D Dred_2666 spore germination B3 GerAC family protein K06308 yfkR; spore germination protein D Dred_3194 Propeptide, PepSY amd peptidase M4 K06313 ypeB; spore germination protein C 99993 Cell motility C 99995 Signaling proteins D Dred_0345 Uncharacterized protein involved in stress response-like protein K05792 terA; tellurite resistance protein TerA D Dred_0336 stress protein K05795 terD; tellurium resistance protein TerD D Dred_0338 stress protein K05795 terD; tellurium resistance protein TerD D Dred_0334 tellurium resistance protein K05795 terD; tellurium resistance protein TerD D Dred_0337 stress protein K05795 terD; tellurium resistance protein TerD D Dred_0472 GTP-binding protein TypA K06207 typA; GTP-binding protein D Dred_1671 ACT domain-containing protein K07166 K07166; ACT domain-containing protein D Dred_2484 PhoH family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins D Dred_1250 PhoH family protein K07175 phoH2; PhoH-like ATPase D Dred_2006 putative serine protein kinase, PrkA K07180 prkA; serine protein kinase D Dred_1927 protein of unknown function DUF520 K09767 yajQ; cyclic-di-GMP-binding protein C 99992 Structural proteins D Dred_3060 secretion protein HlyD family protein K01993 ABC-2.TX; HlyD family secretion protein D Dred_2928 efflux transporter, RND family, MFP subunit K02005 ABC.CD.TX; HlyD family secretion protein D Dred_3269 microcompartments protein K27272 pduT; bacterial microcompartment shell protein D Dred_1303 microcompartments protein K27272 pduT; bacterial microcompartment shell protein C 99994 Others D Dred_0710 phosphate uptake regulator, PhoU K02039 phoU; phosphate transport system protein D Dred_2878 molybdopterin molybdochelatase K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] B B 09194 Poorly characterized C 99996 General function prediction only D Dred_2740 helicase domain protein K06877 K06877; DEAD/DEAH box helicase domain-containing protein D Dred_2011 t-RNA-binding domain protein K06878 K06878; tRNA-binding protein D Dred_0664 Patatin K07001 K07001; NTE family protein D Dred_0842 membrane-bound metal-dependent hydrolase K07038 K07038; inner membrane protein D Dred_0844 membrane-bound metal-dependent hydrolase K07038 K07038; inner membrane protein D Dred_0932 membrane-bound metal-dependent hydrolase K07038 K07038; inner membrane protein D Dred_3315 phosphoribosyltransferase K07100 K07100; putative phosphoribosyl transferase D Dred_2626 protein of unknown function SprT K02742 sprT; SprT protein D Dred_0469 membrane protein of unknown function K08972 K08972; putative membrane protein D Dred_2504 conserved hypothetical protein K08972 K08972; putative membrane protein D Dred_2978 hypothetical protein K08982 K08982; putative membrane protein D Dred_2635 putative sodium-glucose/galactose cotransporter K08984 yjdF; putative membrane protein C 99997 Function unknown D Dred_3298 Radical SAM domain protein K06871 K06871; uncharacterized protein D Dred_2082 DRTGG domain protein K06873 K06873; uncharacterized protein D Dred_2853 protein of unknown function DUF255 K06888 K06888; uncharacterized protein D Dred_1219 GPW/gp25 family protein K06903 W; Bacteriophage baseplate protein W D Dred_1216 phage late control D family protein K06905 D; Bacteriophage probable baseplate hub protein D Dred_1212 conserved hypothetical protein K06907 FI; Bacteriophage tail sheath protein D Dred_1213 phage major tail tube protein K06908 FII; Bacteriophage tail tube protein D Dred_2854 protein of unknown function DUF815 K06923 K06923; uncharacterized protein D Dred_2330 CoA-binding domain protein K06929 K06929; uncharacterized protein D Dred_1340 protein of unknown function DUF134 K06933 K06933; uncharacterized protein D Dred_2217 protein of unknown function DUF134 K06933 K06933; uncharacterized protein D Dred_1650 protein of unknown function UPF0153 K06940 K06940; uncharacterized protein D Dred_0632 protein of unknown function UPF0153 K06940 K06940; uncharacterized protein D Dred_1442 protein of unknown function UPF0153 K06940 K06940; uncharacterized protein D Dred_1819 metal dependent phosphohydrolase K06950 K06950; uncharacterized protein D Dred_2054 RNA-binding protein (KH domain) K06960 K06960; uncharacterized protein D Dred_0197 protein of unknown function DUF901 K06962 K06962; uncharacterized protein D Dred_1786 conserved hypothetical protein K07034 K07034; uncharacterized protein D Dred_2759 amidohydrolase 2 K07045 K07045; uncharacterized protein D Dred_0596 amidohydrolase 2 K07045 K07045; uncharacterized protein D Dred_2017 TatD-related deoxyribonuclease K07051 K07051; uncharacterized protein D Dred_0736 NAD-dependent epimerase/dehydratase K07071 K07071; uncharacterized protein D Dred_3117 DNA polymerase, beta domain protein region K07075 K07075; uncharacterized protein D Dred_3213 TRAP transporter solute receptor, TAXI family K07080 K07080; uncharacterized protein D Dred_0548 permease K07089 K07089; uncharacterized protein D Dred_0556 permease K07089 K07089; uncharacterized protein D Dred_1576 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Dred_1425 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Dred_1512 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Dred_1264 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Dred_1316 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Dred_1313 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Dred_1427 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Dred_0424 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Dred_2748 protein of unknown function DUF81 K07090 K07090; uncharacterized protein D Dred_0738 phosphodiesterase, MJ0936 family K07095 K07095; uncharacterized protein D Dred_2682 phosphodiesterase, MJ0936 family K07095 K07095; uncharacterized protein D Dred_0745 metallophosphoesterase K07098 K07098; uncharacterized protein D Dred_2858 metallophosphoesterase K07099 K07099; uncharacterized protein D Dred_1583 glucose-inhibited division protein A K07137 K07137; uncharacterized protein D Dred_1436 FAD dependent oxidoreductase K07137 K07137; uncharacterized protein D Dred_0425 conserved hypothetical protein K07137 K07137; uncharacterized protein D Dred_1358 conserved hypothetical radical SAM protein K07139 K07139; uncharacterized protein D Dred_3319 protein of unknown function DUF554 K07150 K07150; uncharacterized protein D Dred_2458 protein of unknown function DUF164 K07164 K07164; uncharacterized protein D Dred_1233 conserved hypothetical protein K09004 K09004; uncharacterized protein D Dred_2119 protein of unknown function DUF192 K09005 K09005; uncharacterized protein D Dred_1804 GatB/Yqey domain protein K09117 K09117; uncharacterized protein D Dred_1797 protein of unknown function UPF0182 K09118 K09118; uncharacterized protein D Dred_1177 conserved hypothetical protein K09126 K09126; uncharacterized protein D Dred_0717 protein of unknown function DUF167 K09131 K09131; uncharacterized protein D Dred_1756 protein of unknown function DUF366 K09139 K09139; uncharacterized protein D Dred_2660 putative PAS/PAC sensor protein K09155 K09155; uncharacterized protein D Dred_1672 protein of unknown function DUF711 K09157 K09157; uncharacterized protein D Dred_1668 metal dependent phosphohydrolase K09163 K09163; uncharacterized protein D Dred_1546 protein of unknown function DUF917 K09703 K09703; uncharacterized protein D Dred_0395 protein of unknown function DUF917 K09703 K09703; uncharacterized protein D Dred_1543 protein of unknown function DUF917 K09703 K09703; uncharacterized protein D Dred_1706 protein of unknown function DUF116 K09729 K09729; uncharacterized protein D Dred_0103 protein of unknown function DUF375 K09740 K09740; uncharacterized protein D Dred_1859 protein of unknown function DUF342 K09749 K09749; uncharacterized protein D Dred_1275 protein of unknown function DUF503 K09764 K09764; uncharacterized protein D Dred_2320 Tetratricopeptide domain protein K09766 K09766; uncharacterized protein D Dred_1370 protein of unknown function DUF188 K09768 K09768; uncharacterized protein D Dred_0450 protein of unknown function DUF327 K09770 K09770; uncharacterized protein D Dred_0645 acid phosphatase/vanadium-dependent haloperoxidase related protein K09775 K09775; uncharacterized protein D Dred_0078 protein of unknown function DUF458 K09776 K09776; uncharacterized protein D Dred_2573 protein of unknown function DUF378 K09779 K09779; uncharacterized protein D Dred_2005 protein of unknown function DUF444 K09786 K09786; uncharacterized protein D Dred_2057 putative helix-turn-helix protein, YlxM/p13 family protein K09787 K09787; uncharacterized protein D Dred_2010 protein of unknown function DUF456 K09793 K09793; uncharacterized protein D Dred_1567 protein of unknown function DUF541 K09797 K09797; uncharacterized protein D Dred_1577 protein of unknown function DUF610, YibQ K09798 K09798; uncharacterized protein D Dred_2326 conserved hypothetical protein K09942 K09942; uncharacterized protein D Dred_2918 conserved hypothetical protein K05967 K05967; uncharacterized protein D Dred_0837 conserved hypothetical protein K05967 K05967; uncharacterized protein D Dred_1157 conserved hypothetical protein K05739 seaA; uncharacterized protein D Dred_2230 conserved hypothetical protein K01163 K01163; uncharacterized protein D Dred_2657 protein of unknown function DUF47 K07220 K07220; uncharacterized protein D Dred_1959 protein of unknown function DUF448 K07742 ylxR; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: May 18, 2024