+F Repair protein KO
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DNA Repair and Recombination Proteins - Gluconacetobacter diazotrophicus PA1 5 (Brazil)
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D GDI1230 putative methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D GDI0751 phrB; putative deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E GDI1324 mutY; putative A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E GDI0052 nth; putative endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
D GDI1163 putative endonuclease K05986 NUCS; nuclease S1 [EC:3.1.30.1]
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D GDI2178 putative Bifunctional acetyltransferase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D GDI3351 putative (di)nucleoside polyphosphate hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D GDI3150 putative nucleoside diphosphate K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D GDI1230 putative methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D GDI0470 ada; putative regulatory protein ada (Regulatory protein of adaptative response) K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D GDI0751 phrB; putative deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D GDI0819 alkB; putative alkylated DNA repair protein alkB K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
C BER (base exicision repair)
D DNA glycosylases
E GDI2160 putative Uracil DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E GDI3165 Uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E GDI0726 putative uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E GDI0521 putative DNA-3-methyladenine glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E GDI1324 mutY; putative A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E GDI1769 mutM; putative formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E GDI0052 nth; putative endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E GDI2228 xthA; putative exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E GDI1816 xthA; putative exodeoxyribonuclease III protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
E GDI1031 recJ; putative single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E GDI3200 ligA; putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E GDI3537 polA; putative DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E GDI2321 uvrA; putative UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
E GDI2106 uvrB; putative UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B
E GDI1818 uvrC; putative UvrABC system protein C (Protein uvrC) (Excinuclease ABC subunit C) K03703 uvrC; excinuclease ABC subunit C
E GDI2889 uvrD; putative DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E GDI1988 uvrD; putative DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E GDI3537 polA; putative DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E GDI3200 ligA; putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F GDI3410 rpoB; DNA-directed RNA polymerase beta chain K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F GDI3409 rpoC; DNA-directed RNA polymerase beta' chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F GDI3380 rpoA; DNA-directed RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F GDI2157 rpoZ; DNA-directed RNA polymerase omega chain K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F GDI1886 mfd; putatve transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E GDI2079 mutS; DNA mismatch repair protein mutS K03555 mutS; DNA mismatch repair protein MutS
E GDI3769 putative DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D Molecular matchmaker
E GDI0592 mutL; putative DNA mismatch repair protein mutL K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E GDI2897 sbcB; putative exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
E GDI3519 xseA; putative exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E GDI1862 xseB; putative exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
E GDI2107 putative exodeoxyribonuclease K10857 exoX; exodeoxyribonuclease X [EC:3.1.11.-]
D DNA polymerase III holoenzyme
E GDI3021 dnaE; putative DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E GDI1772 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E GDI3318 putative DNA polymerase III K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
E GDI2395 holA; putative DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E GDI1799 holB; putative DNA polymerase III delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E GDI2964 dnaQ; putative DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E GDI3468 dnaX; putative DNA polymerase III tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E GDI3200 ligA; putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E GDI2889 uvrD; putative DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E GDI1988 uvrD; putative DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E GDI2322 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E GDI3912 SSB K03111 ssb; single-strand DNA-binding protein
E GDI3779 putative repair endonuclease K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E GDI0965 recD; putative exodeoxyribonuclease V alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E GDI2815 recD; putative exodeoxyribonuclease K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E GDI2296 recA; Protein recA (Recombinase A) K03553 recA; recombination protein RecA
E GDI0800 ruvA; putative holliday junction ATP-dependent DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA
E GDI0801 ruvB; Holliday junction ATP-dependent DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E GDI0799 ruvC; Crossover junction endodeoxyribonuclease ruvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E GDI2358 priA; putative primosomal protein N K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E GDI2897 sbcB; putative exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
E GDI0121 putative metallophosphoesterase K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E GDI2296 recA; Protein recA (Recombinase A) K03553 recA; recombination protein RecA
E GDI1137 radA; putative DNA repair protein K04485 radA; DNA repair protein RadA/Sms
E GDI1773 recF; putative DNA replication and repair protein recF K03629 recF; DNA replication and repair protein RecF
E GDI1884 recG; putative ATP-dependent DNA helicase recG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E GDI1031 recJ; putative single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E GDI3017 recO; putative DNA repair protein recO K03584 recO; DNA repair protein RecO (recombination protein O)
E GDI3466 recR; putative recombination protein recR K06187 recR; recombination protein RecR
E GDI3199 recN; DNA repair protein recN K03631 recN; DNA repair protein RecN (Recombination protein N)
E GDI0800 ruvA; putative holliday junction ATP-dependent DNA helicase ruvA K03550 ruvA; holliday junction DNA helicase RuvA
E GDI0801 ruvB; Holliday junction ATP-dependent DNA helicase ruvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E GDI0799 ruvC; Crossover junction endodeoxyribonuclease ruvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
E GDI0715 putative UvrD/REP helicase K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
E GDI0714 conserved hypothetical protein K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D Other HR factor
E GDI2204 conserved hypothetical protein K15342 cas1; CRISP-associated protein Cas1
E GDI0059 conserved hypothetical protein K15342 cas1; CRISP-associated protein Cas1
E GDI2124 conserved hypothetical protein K15342 cas1; CRISP-associated protein Cas1
D Archaeal homologous recombinant proteins
E GDI0121 putative metallophosphoesterase K03547 sbcD; DNA repair protein SbcD/Mre11
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
E GDI0168 putative DNA binding protein K10979 ku; DNA end-binding protein Ku
E GDI0170 putative DNA binding protein K10979 ku; DNA end-binding protein Ku
E GDI0169 putative DNA ligase-like protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F GDI2323 gyrA; putative DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F GDI1774 gyrB; putative DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F GDI0045 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F GDI2881 hup; putative DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
F GDI2811 putative DNA binding protein K03530 hupB; DNA-binding protein HU-beta
F GDI1020 putative DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta
F GDI3041 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
F GDI2588 hupB; putative DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta
F GDI0923 hupA; putative DNA-binding protein HU-alpha K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F GDI1031 recJ; putative single-stranded-DNA-specific exonuclease recJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F GDI3017 recO; putative DNA repair protein recO K03584 recO; DNA repair protein RecO (recombination protein O)
F GDI3466 recR; putative recombination protein recR K06187 recR; recombination protein RecR
F GDI3200 ligA; putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
F GDI3074 ihfA; putative integration host factor alpha-subunit K04764 ihfA; integration host factor subunit alpha
F GDI3159 ihfB; putative integration host factor beta-subunit K05788 ihfB; integration host factor subunit beta
E Supressor
F GDI2897 sbcB; putative exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
F GDI1749 recQ; putative ATP-dependent DNA helicase recQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F GDI2321 uvrA; putative UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
F GDI2106 uvrB; putative UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D GDI0832 dinB; putative DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
C Other SOS response factors
D GDI2296 recA; Protein recA (Recombinase A) K03553 recA; recombination protein RecA
D GDI1923 lexA; putative lexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D GDI3199 recN; DNA repair protein recN K03631 recN; DNA repair protein RecN (Recombination protein N)
D GDI0102 conserved hypothetical protein K14160 imuA; protein ImuA
D GDI2888 conserved hypothetical protein K14160 imuA; protein ImuA
D GDI0103 putative DNA polymerase protein K14161 imuB; protein ImuB
D GDI0677 conserved hypothetical protein K14161 imuB; protein ImuB
D GDI2887 putative nucleotidyltransferase K14161 imuB; protein ImuB
D GDI0104 dnaE; putative DNA polymerase III alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D GDI0678 dnaE; putative Error-prone DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D GDI2886 dnaE; putative DNA polymerase III alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D GDI2322 ssb; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D GDI3912 SSB K03111 ssb; single-strand DNA-binding protein
D GDI0582 conserved hypothetical protein K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D GDI2047 putative Helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D GDI2676 lhr; putative ATP-dependent helicase lhr K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
C Modulation of nucleotide pools
D GDI2178 putative Bifunctional acetyltransferase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D GDI3351 putative (di)nucleoside polyphosphate hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D GDI3150 putative nucleoside diphosphate K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D GDI1308 putative NUDIX/MutT-family protein K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58]
D GDI1823 nrdA; Ribonucleoside-diphosphate reductase large subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D GDI0910 putative vitamin B12-dependent ribonucleotide reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D GDI1824 nrdB; putative ribonucleotide reductase small subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024