+F Repair protein KO #

  DNA Repair and Recombination Proteins - Gloeobacter violaceus

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D glr3610 ORF_ID:glr3610 K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D glr0784 phrA; ORF_ID:glr0784 K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E gll2491 ORF_ID:gll2491; similar to N-methylpurine-DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E gll0866 ORF_ID:gll0866 K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E gll0656 ORF_ID:gll0656 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E gll1821 ORF_ID:gll1821 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D glr0869 mutT; ORF_ID:glr0869 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D glr4330 ORF_ID:glr4330; mutator MutT protein homolog K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D glr1465 ORF_ID:glr1465 K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D glr3610 ORF_ID:glr3610 K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D glr0784 phrA; ORF_ID:glr0784 K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E glr2408 ORF_ID:glr2408; probable DNA polymerase related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E gll2018 ORF_ID:gll2018; probable DNA-3-methyladenine glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E glr3609 ORF_ID:glr3609 K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E gll2491 ORF_ID:gll2491; similar to N-methylpurine-DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E gll0866 ORF_ID:gll0866 K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E gll3407 fpg; ORF_ID:gll3407 K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E gll0656 ORF_ID:gll0656 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E gll1821 ORF_ID:gll1821 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E glr0140 ORF_ID:glr0140 K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E glr4243 ORF_ID:glr4243 K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E glr0041 recJ; ORF_ID:glr0041 K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E glr0727 ORF_ID:glr0727 K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E glr4236 uvrA; ORF_ID:glr4236 K03701 uvrA; excinuclease ABC subunit A E gll1855 uvrB; ORF_ID:gll1855 K03702 uvrB; excinuclease ABC subunit B E gll3592 uvrC; ORF_ID:gll3592 K03703 uvrC; excinuclease ABC subunit C E glr2394 ORF_ID:glr2394 K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E gll3642 ORF_ID:gll3642; hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E glr0727 ORF_ID:glr0727 K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F glr2283 rpoB; ORF_ID:glr2283 K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F glr4277 rpoC1; ORF_ID:glr4277 K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F glr4278 rpoC2; ORF_ID:glr4278 K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F gll3571 rpoA; ORF_ID:gll3571 K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F gsl1620 ORF_ID:gsl1620; hypothetical protein K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F gll3837 ORF_ID:gll3837 K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E gll1033 mutS; ORF_ID:gll1033 K03555 mutS; DNA mismatch repair protein MutS E glr3637 DNA mismatch repair protein MutS homolog; ORF_ID:glr3637 K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E glr1279 mutL; ORF_ID:glr1279 K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases D DNA polymerase III holoenzyme E glr3934 dnaE; ORF_ID:glr3934 K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E glr3232 dnaN; ORF_ID:glr3232 K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E gll0066 ORF_ID:gll0066; hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E gll1432 dnaX; ORF_ID:gll1432 K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E glr1609 dnaX; ORF_ID:glr1609 K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E glr0727 ORF_ID:glr0727 K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E glr2394 ORF_ID:glr2394 K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E gll3642 ORF_ID:gll3642; hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E glr2487 ORF_ID:glr2487 K03111 ssb; single-strand DNA-binding protein E gll0433 ycf41; ORF_ID:gll0433; hypothetical protein K03111 ssb; single-strand DNA-binding protein E glr2942 ORF_ID:glr2942 K03111 ssb; single-strand DNA-binding protein E glr2709 ORF_ID:glr2709 K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E glr0629 ORF_ID:glr0629 K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E gll3416 recA; ORF_ID:gll3416 K03553 recA; recombination protein RecA E glr2884 ruvA; ORF_ID:glr2884 K03550 ruvA; holliday junction DNA helicase RuvA E gll3119 ruvB; ORF_ID:gll3119 K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E gll3300 ruvC; ORF_ID:gll3300 K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E gll0025 ORF_ID:gll0025 K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E glr2862 ORF_ID:glr2862; hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 E glr0513 ORF_ID:glr0513; unknown protein K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E gll3416 recA; ORF_ID:gll3416 K03553 recA; recombination protein RecA E glr2406 radA; DNA repair protein RadA homolog; ORF_ID:glr2406 K04485 radA; DNA repair protein RadA/Sms E gll2405 recF; ORF_ID:gll2405 K03629 recF; DNA replication and repair protein RecF E gll1278 recG; ORF_ID:gll1278 K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E glr0041 recJ; ORF_ID:glr0041 K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E gll0084 ORF_ID:gll0084; hypothetical protein K03584 recO; DNA repair protein RecO (recombination protein O) E glr3499 recR; ORF_ID:glr3499 K06187 recR; recombination protein RecR E gll0271 recN; ORF_ID:gll0271 K03631 recN; DNA repair protein RecN (Recombination protein N) E glr2884 ruvA; ORF_ID:glr2884 K03550 ruvA; holliday junction DNA helicase RuvA E gll3119 ruvB; ORF_ID:gll3119 K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E gll3300 ruvC; ORF_ID:gll3300 K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins E glr2862 ORF_ID:glr2862; hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 E glr0513 ORF_ID:glr0513; unknown protein K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F gll3082 gyrA; ORF_ID:gll3082 K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F gll2050 gyrA; ORF_ID:gll2050 K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F gll2506 gyrB; ORF_ID:gll2506 K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F gll1020 topA; ORF_ID:gll1020 K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F glr3198 topA; ORF_ID:glr3198 K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F gsl0832 hup; ORF_ID:gsl0832 K03530 hupB; DNA-binding protein HU-beta F gsl3424 ORF_ID:gsl3424 K03530 hupB; DNA-binding protein HU-beta F gll3545 ORF_ID:gll3545; probable DNA binding protein HU K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F glr0041 recJ; ORF_ID:glr0041 K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F gll0084 ORF_ID:gll0084; hypothetical protein K03584 recO; DNA repair protein RecO (recombination protein O) F glr3499 recR; ORF_ID:glr3499 K06187 recR; recombination protein RecR F glr0727 ORF_ID:glr0727 K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F gll2629 recQ; ORF_ID:gll2629 K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F glr3980 recQ; ORF_ID:glr3980 K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F glr4236 uvrA; ORF_ID:glr4236 K03701 uvrA; excinuclease ABC subunit A F gll1855 uvrB; ORF_ID:gll1855 K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C Other SOS response factors D gll3416 recA; ORF_ID:gll3416 K03553 recA; recombination protein RecA D gll0709 ORF_ID:gll0709 K01356 lexA; repressor LexA [EC:3.4.21.88] D gll0271 recN; ORF_ID:gll0271 K03631 recN; DNA repair protein RecN (Recombination protein N) D glr2487 ORF_ID:glr2487 K03111 ssb; single-strand DNA-binding protein D gll0433 ycf41; ORF_ID:gll0433; hypothetical protein K03111 ssb; single-strand DNA-binding protein D glr2942 ORF_ID:glr2942 K03111 ssb; single-strand DNA-binding protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases C Modulation of nucleotide pools D glr0869 mutT; ORF_ID:glr0869 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D glr4330 ORF_ID:glr4330; mutator MutT protein homolog K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D glr1465 ORF_ID:glr1465 K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D gll3966 ORF_ID:gll3966; probable ribonucleotide reductase large subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024