+F Repair protein KO
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DNA Repair and Recombination Proteins - Gloeobacter violaceus
%
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D glr3610 ORF_ID:glr3610 K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D glr0784 phrA; ORF_ID:glr0784 K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E gll2491 ORF_ID:gll2491; similar to N-methylpurine-DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E gll0866 ORF_ID:gll0866 K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E gll0656 ORF_ID:gll0656 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E gll1821 ORF_ID:gll1821 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D glr0869 mutT; ORF_ID:glr0869 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D glr4330 ORF_ID:glr4330; mutator MutT protein homolog K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D glr1465 ORF_ID:glr1465 K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D glr3610 ORF_ID:glr3610 K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D glr0784 phrA; ORF_ID:glr0784 K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E glr2408 ORF_ID:glr2408; probable DNA polymerase related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E gll2018 ORF_ID:gll2018; probable DNA-3-methyladenine glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E glr3609 ORF_ID:glr3609 K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E gll2491 ORF_ID:gll2491; similar to N-methylpurine-DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E gll0866 ORF_ID:gll0866 K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E gll3407 fpg; ORF_ID:gll3407 K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E gll0656 ORF_ID:gll0656 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E gll1821 ORF_ID:gll1821 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E glr0140 ORF_ID:glr0140 K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E glr4243 ORF_ID:glr4243 K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
D RecJ
E glr0041 recJ; ORF_ID:glr0041 K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E glr0727 ORF_ID:glr0727 K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E glr4236 uvrA; ORF_ID:glr4236 K03701 uvrA; excinuclease ABC subunit A
E gll1855 uvrB; ORF_ID:gll1855 K03702 uvrB; excinuclease ABC subunit B
E gll3592 uvrC; ORF_ID:gll3592 K03703 uvrC; excinuclease ABC subunit C
E glr2394 ORF_ID:glr2394 K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E gll3642 ORF_ID:gll3642; hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E glr0727 ORF_ID:glr0727 K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F glr2283 rpoB; ORF_ID:glr2283 K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F glr4277 rpoC1; ORF_ID:glr4277 K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F glr4278 rpoC2; ORF_ID:glr4278 K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F gll3571 rpoA; ORF_ID:gll3571 K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F gsl1620 ORF_ID:gsl1620; hypothetical protein K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F gll3837 ORF_ID:gll3837 K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E gll1033 mutS; ORF_ID:gll1033 K03555 mutS; DNA mismatch repair protein MutS
E glr3637 DNA mismatch repair protein MutS homolog; ORF_ID:glr3637 K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
E glr1279 mutL; ORF_ID:glr1279 K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
E glr3934 dnaE; ORF_ID:glr3934 K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E glr3232 dnaN; ORF_ID:glr3232 K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E gll0066 ORF_ID:gll0066; hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E gll1432 dnaX; ORF_ID:gll1432 K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E glr1609 dnaX; ORF_ID:glr1609 K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E glr0727 ORF_ID:glr0727 K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E glr2394 ORF_ID:glr2394 K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E gll3642 ORF_ID:gll3642; hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E glr2487 ORF_ID:glr2487 K03111 ssb; single-strand DNA-binding protein
E gll0433 ycf41; ORF_ID:gll0433; hypothetical protein K03111 ssb; single-strand DNA-binding protein
E glr2942 ORF_ID:glr2942 K03111 ssb; single-strand DNA-binding protein
E glr2709 ORF_ID:glr2709 K06223 dam; DNA adenine methylase [EC:2.1.1.72]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E glr0629 ORF_ID:glr0629 K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E gll3416 recA; ORF_ID:gll3416 K03553 recA; recombination protein RecA
E glr2884 ruvA; ORF_ID:glr2884 K03550 ruvA; holliday junction DNA helicase RuvA
E gll3119 ruvB; ORF_ID:gll3119 K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E gll3300 ruvC; ORF_ID:gll3300 K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E gll0025 ORF_ID:gll0025 K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E glr2862 ORF_ID:glr2862; hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50
E glr0513 ORF_ID:glr0513; unknown protein K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E gll3416 recA; ORF_ID:gll3416 K03553 recA; recombination protein RecA
E glr2406 radA; DNA repair protein RadA homolog; ORF_ID:glr2406 K04485 radA; DNA repair protein RadA/Sms
E gll2405 recF; ORF_ID:gll2405 K03629 recF; DNA replication and repair protein RecF
E gll1278 recG; ORF_ID:gll1278 K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E glr0041 recJ; ORF_ID:glr0041 K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E gll0084 ORF_ID:gll0084; hypothetical protein K03584 recO; DNA repair protein RecO (recombination protein O)
E glr3499 recR; ORF_ID:glr3499 K06187 recR; recombination protein RecR
E gll0271 recN; ORF_ID:gll0271 K03631 recN; DNA repair protein RecN (Recombination protein N)
E glr2884 ruvA; ORF_ID:glr2884 K03550 ruvA; holliday junction DNA helicase RuvA
E gll3119 ruvB; ORF_ID:gll3119 K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E gll3300 ruvC; ORF_ID:gll3300 K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
E glr2862 ORF_ID:glr2862; hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50
E glr0513 ORF_ID:glr0513; unknown protein K03547 sbcD; DNA repair protein SbcD/Mre11
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F gll3082 gyrA; ORF_ID:gll3082 K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F gll2050 gyrA; ORF_ID:gll2050 K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F gll2506 gyrB; ORF_ID:gll2506 K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F gll1020 topA; ORF_ID:gll1020 K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
F glr3198 topA; ORF_ID:glr3198 K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F gsl0832 hup; ORF_ID:gsl0832 K03530 hupB; DNA-binding protein HU-beta
F gsl3424 ORF_ID:gsl3424 K03530 hupB; DNA-binding protein HU-beta
F gll3545 ORF_ID:gll3545; probable DNA binding protein HU K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F glr0041 recJ; ORF_ID:glr0041 K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F gll0084 ORF_ID:gll0084; hypothetical protein K03584 recO; DNA repair protein RecO (recombination protein O)
F glr3499 recR; ORF_ID:glr3499 K06187 recR; recombination protein RecR
F glr0727 ORF_ID:glr0727 K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
E Supressor
F gll2629 recQ; ORF_ID:gll2629 K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F glr3980 recQ; ORF_ID:glr3980 K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F glr4236 uvrA; ORF_ID:glr4236 K03701 uvrA; excinuclease ABC subunit A
F gll1855 uvrB; ORF_ID:gll1855 K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
D gll3416 recA; ORF_ID:gll3416 K03553 recA; recombination protein RecA
D gll0709 ORF_ID:gll0709 K01356 lexA; repressor LexA [EC:3.4.21.88]
D gll0271 recN; ORF_ID:gll0271 K03631 recN; DNA repair protein RecN (Recombination protein N)
D glr2487 ORF_ID:glr2487 K03111 ssb; single-strand DNA-binding protein
D gll0433 ycf41; ORF_ID:gll0433; hypothetical protein K03111 ssb; single-strand DNA-binding protein
D glr2942 ORF_ID:glr2942 K03111 ssb; single-strand DNA-binding protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D glr0869 mutT; ORF_ID:glr0869 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D glr4330 ORF_ID:glr4330; mutator MutT protein homolog K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D glr1465 ORF_ID:glr1465 K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D gll3966 ORF_ID:gll3966; probable ribonucleotide reductase large subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024