+E Messenger RNA Biogenesis KO
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Messenger RNA Biogenesis - Heterocephalus glaber (naked mole-rat)
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AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
E 101699229 Rnmt; RNA guanine-7 methyltransferase K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E 101697192 Rngtt; RNA guanylyltransferase and 5'-phosphatase K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74]
E 101702664 Cdk7; cyclin dependent kinase 7 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 101702635 Cmtr1; cap methyltransferase 1 K14589 CMTR1; cap1 methyltransferase [EC:2.1.1.57]
E 101696697 Cmtr2; cap methyltransferase 2 K14590 CMTR2; cap2 methyltransferase [EC:2.1.1.296]
E 101707073 RNMT-activating mini protein K18708 FAM103A1; RNMT-activating mini protein
E 101705672 Fam103a1; family with sequence similarity 103 member A1 K18708 FAM103A1; RNMT-activating mini protein
D Cap binding complex
E 101698074 Ncbp1; nuclear cap binding protein subunit 1 K12882 NCBP1; nuclear cap-binding protein subunit 1
E 101713846 Ncbp2; nuclear cap binding protein subunit 2 K12883 NCBP2; nuclear cap-binding protein subunit 2
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
E 101720985 Nudt21; nudix hydrolase 21 K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5
E 101706514 Cpsf7; cleavage and polyadenylation specific factor 7 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
E 101723861 Cpsf6; cleavage and polyadenylation specific factor 6 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
D Pre-mRNA cleavage factor IIm (CFIIm)
E 101723956 Clp1; cleavage and polyadenylation factor I subunit 1 K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
E 101717641 Pcf11; PCF11 cleavage and polyadenylation factor subunit K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
D Cleavage and polyadenylation specificity factor (CPSF) complex
E 101720593 Cpsf1; cleavage and polyadenylation specific factor 1 K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E 101696793 Cpsf2; cleavage and polyadenylation specific factor 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 101721287 Cpsf3; cleavage and polyadenylation specific factor 3 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 101698559 Cpsf4; cleavage and polyadenylation specific factor 4 K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 101700547 Fip1l1; factor interacting with PAPOLA and CPSF1 K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1
E 101702113 Wdr33; WD repeat domain 33 K15542 PFS2; polyadenylation factor subunit 2
E 101704836 Wdr82; WD repeat domain 82 K14962 WDR82; COMPASS component SWD2
E 101714468 Ppp1cc; protein phosphatase 1 catalytic subunit gamma K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 101698044 Ppp1cb; protein phosphatase 1 catalytic subunit beta K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 101705408 Ppp1ca; protein phosphatase 1 catalytic subunit alpha K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 101708866 Ssu72; SSU72 homolog, RNA polymerase II CTD phosphatase K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
D Cleavage stimulation factor (CSTF) complex
E 101711727 Cstf1; cleavage stimulation factor subunit 1 K14406 CSTF1; cleavage stimulation factor subunit 1
E 101708602 cleavage stimulation factor subunit 2-like K14407 CSTF2; cleavage stimulation factor subunit 2
E 101707151 Cstf2t; cleavage stimulation factor subunit 2 tau variant K14407 CSTF2; cleavage stimulation factor subunit 2
E 101718350 Cstf2; cleavage stimulation factor subunit 2 K14407 CSTF2; cleavage stimulation factor subunit 2
E 101713352 Cstf3; cleavage stimulation factor subunit 3 K14408 CSTF3; cleavage stimulation factor subunit 3
E 101718311 Sympk; symplekin K06100 SYMPK; symplekin
D U7-dependent histone pre-mRNA processing factors
E 101708266 Snrpb; small nuclear ribonucleoprotein polypeptides B and B1 K11086 SNRPB; small nuclear ribonucleoprotein B and B'
E 101700785 small nuclear ribonucleoprotein-associated protein B-like K11086 SNRPB; small nuclear ribonucleoprotein B and B'
E 101719211 Snrpd3; small nuclear ribonucleoprotein D3 polypeptide K11088 SNRPD3; small nuclear ribonucleoprotein D3
E 101725291 small nuclear ribonucleoprotein Sm D3-like K11088 SNRPD3; small nuclear ribonucleoprotein D3
E 101697428 Snrpe; small nuclear ribonucleoprotein polypeptide E K11097 SNRPE; small nuclear ribonucleoprotein E
E 101725717 small nuclear ribonucleoprotein F-like K11098 SNRPF; small nuclear ribonucleoprotein F
E 101701100 Snrpf; small nuclear ribonucleoprotein polypeptide F K11098 SNRPF; small nuclear ribonucleoprotein F
E 101724662 Snrpg; small nuclear ribonucleoprotein polypeptide G K11099 SNRPG; small nuclear ribonucleoprotein G
E 101721611 Lsm10; LSM10, U7 small nuclear RNA associated K25591 LSM10; U7 snRNA-associated Sm-like protein LSm10
E 101705581 Lsm11; LSM11, U7 small nuclear RNA associated K25592 LSM11; U7 snRNA-associated Sm-like protein LSm11
E 101696793 Cpsf2; cleavage and polyadenylation specific factor 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 101721287 Cpsf3; cleavage and polyadenylation specific factor 3 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 101708602 cleavage stimulation factor subunit 2-like K14407 CSTF2; cleavage stimulation factor subunit 2
E 101707151 Cstf2t; cleavage stimulation factor subunit 2 tau variant K14407 CSTF2; cleavage stimulation factor subunit 2
E 101718350 Cstf2; cleavage stimulation factor subunit 2 K14407 CSTF2; cleavage stimulation factor subunit 2
E 101718311 Sympk; symplekin K06100 SYMPK; symplekin
E 101723332 histone RNA hairpin-binding protein-like K18710 SLBP; histone RNA hairpin-binding protein
E 101721347 Slbp; stem-loop binding protein K18710 SLBP; histone RNA hairpin-binding protein
E 101705745 histone RNA hairpin-binding protein-like K18710 SLBP; histone RNA hairpin-binding protein
E 101712453 oocyte-specific histone RNA stem-loop-binding protein 2-like K18710 SLBP; histone RNA hairpin-binding protein
E 101700716 Casp8ap2; caspase 8 associated protein 2 K25593 CASP8AP2; CASP8-associated protein 2
D DRB sensitivity inducing factor (DSIF) complex
E 101710690 Supt4h1; SPT4 homolog, DSIF elongation factor subunit K15171 SUPT4H1; transcription elongation factor SPT4
E 101726331 Supt5h; SPT5 homolog, DSIF elongation factor subunit K15172 SUPT5H; transcription elongation factor SPT5
D N6-methyltransferase complex
E 101700628 Mettl3; methyltransferase like 3 K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]
E 101708897 Mettl14; methyltransferase like 14 K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit
E 101724336 Mettl4; methyltransferase like 4 K24174 METTL4; N(6)-adenine-specific DNA methyltransferase [EC:2.1.1.72]
E 101709207 Mettl16; methyltransferase like 16 K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346]
E 101708152 pre-mRNA-splicing regulator WTAP K22824 WTAP; pre-mRNA-splicing regulator WTAP
E 101699843 pre-mRNA-splicing regulator WTAP-like K22824 WTAP; pre-mRNA-splicing regulator WTAP
E 101713336 Wtap; Wilms tumor 1 associated protein K22824 WTAP; pre-mRNA-splicing regulator WTAP
E 101715776 pre-mRNA-splicing regulator WTAP-like K22824 WTAP; pre-mRNA-splicing regulator WTAP
E 101712723 pre-mRNA-splicing regulator WTAP-like K22824 WTAP; pre-mRNA-splicing regulator WTAP
E 101698486 KIAA1429 ortholog K22910 VIRMA; protein virilizer
E 101720102 Rbm15b; RNA binding motif protein 15B K13190 RBM15; RNA-binding protein 15
E 101704815 putative RNA-binding protein 15B K13190 RBM15; RNA-binding protein 15
E 101715005 Rbm15; RNA binding motif protein 15 K13190 RBM15; RNA-binding protein 15
E 101711998 Zc3h13; zinc finger CCCH-type containing 13 K22909 ZC3H13; zinc finger CCCH domain-containing protein 13
E 101701435 Cbll1; Cbl proto-oncogene like 1 K15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27]
D Poly(A) addition factors
E 101714424 Papola; poly(A) polymerase alpha K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 106008978 Papolb; poly(A) polymerase beta K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 101701248 Papolg; poly(A) polymerase gamma K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 101725038 Papd4; poly(A) RNA polymerase D4, non-canonical K14079 PAPD4; poly(A) RNA polymerase GLD2 [EC:2.7.7.19]
E 101716868 Tut1; terminal uridylyl transferase 1, U6 snRNA-specific K18709 TUT1; speckle targeted PIP5K1A-regulated poly(A) polymerase [EC:2.7.7.19 2.7.7.52]
D Negative regulators of mRNA 3' end processing
E 101722439 Bard1; BRCA1 associated RING domain 1 K10683 BARD1; BRCA1-associated RING domain protein 1
E 101708286 Rbm26; RNA binding motif protein 26 K13192 RBM26; RNA-binding protein 26
E 101700280 Fto; FTO, alpha-ketoglutarate dependent dioxygenase K19469 FTO; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 101706740 Alkbh5; alkB homolog 5, RNA demethylase K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 101697585 Tardbp; TAR DNA binding protein K23600 TARDBP; TAR DNA-binding protein 43
C Other processing factors
D 101719959 Dhx40; DEAH-box helicase 40 K18711 DHX40; ATP-dependent RNA helicase DHX40 [EC:5.6.2.6]
D 101696289 Kin; Kin17 DNA and RNA binding protein K13102 KIN; DNA/RNA-binding protein KIN17
D 101699266 Mettl8; methyltransferase like 8 K24975 METTL8; mRNA N(3)-methylcytidine methyltransferase METTL8 [EC:2.1.1.-]
D 101712000 Mettl22; methyltransferase like 22 K23040 METTL22; methyltransferase-like protein 22 [EC:2.1.1.-]
D 101723537 Fam46a; family with sequence similarity 46 member A K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 101723830 Fam46b; family with sequence similarity 46 member B K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 101701291 Fam46c; family with sequence similarity 46 member C K23034 TENT5C; terminal nucleotidyltransferase 5C [EC:2.7.7.19]
D 101699325 Fam46d; family with sequence similarity 46 member D K23035 TENT5D; terminal nucleotidyltransferase 5D [EC:2.7.7.19]
D 101718738 Zc3h14; zinc finger CCCH-type containing 14 K23038 ZC3H14; zinc finger CCCH domain-containing protein 14
D 101707531 Srrt; serrate, RNA effector molecule K27103 SRRT; serrate RNA effector molecule
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
E 101702668 Rbm8a; RNA binding motif protein 8A K12876 RBM8A; RNA-binding protein 8A
E 101709411 Magoh; mago homolog, exon junction complex core component K12877 MAGOH; protein mago nashi
E 101710911 Magohb; mago homolog B, exon junction complex core component K12877 MAGOH; protein mago nashi
E 101714006 Alyref; Aly/REF export factor K12881 THOC4; THO complex subunit 4
E 101719937 Ddx39b; DExD-box helicase 39B K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
E 101719673 Eif4a3; eukaryotic translation initiation factor 4A3 K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 101703256 Ccdc174; coiled-coil domain containing 174 K25178 CCDC174; coiled-coil domain-containing protein 174
E 101725973 Casc3; cancer susceptibility candidate 3 K14323 CASC3; protein CASC3
E 101704128 Sap18; Sin3A associated protein 18 K14324 SAP18; histone deacetylase complex subunit SAP18
E 101716915 Pnn; pinin, desmosome associated protein K13114 PNN; pinin
E 101718648 Acin1; apoptotic chromatin condensation inducer 1 K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus
E 101719057 RNA-binding protein with serine-rich domain 1-like K14325 RNPS1; RNA-binding protein with serine-rich domain 1
E 101704078 Rnps1; RNA binding protein with serine rich domain 1 K14325 RNPS1; RNA-binding protein with serine-rich domain 1
E 101718205 RNA-binding protein with serine-rich domain 1-like K14325 RNPS1; RNA-binding protein with serine-rich domain 1
E 101724550 Srrm1; serine and arginine repetitive matrix 1 K13171 SRRM1; serine/arginine repetitive matrix protein 1
D TREX complex
E 101719619 Thoc1; THO complex 1 K12878 THOC1; THO complex subunit 1
E 101713273 THO complex subunit 2-like K12879 THOC2; THO complex subunit 2
E 101714686 Thoc2; THO complex 2 K12879 THOC2; THO complex subunit 2
E 101717461 Thoc3; THO complex 3 K12880 THOC3; THO complex subunit 3
E 101714006 Alyref; Aly/REF export factor K12881 THOC4; THO complex subunit 4
E 101704520 Thoc5; THO complex 5 K13174 THOC5; THO complex subunit 5
E 101724280 Thoc6; THO complex 6 K13175 THOC6; THO complex subunit 6
E 101704221 Thoc7; THO complex 7 K13176 THOC7; THO complex subunit 7
D TREX-2 complex
E 101703889 Pcid2; PCI domain containing 2 K23801 PCID2; nuclear mRNA export protein PCID2/THP1
E 101724196 Eny2; ENY2, transcription and export complex 2 subunit K11368 ENY2; enhancer of yellow 2 transcription factor
E 101715233 Cetn2; centrin 2 K10840 CETN2; centrin-2
E 101720737 Cetn3; centrin 3 K16466 CETN3; centrin-3
E 101714594 Mcm3ap; minichromosome maintenance complex component 3 associated protein K24317 MCM3AP; germinal-center associated nuclear protein [EC:2.3.1.48]
D Nuclear pore complex
E 101706333 Tpr; translocated promoter region, nuclear basket protein K09291 TPR; nucleoprotein TPR
E 101707168 Rae1; ribonucleic acid export 1 K14298 RAE1; mRNA export factor
E 101709886 Sec13; SEC13 homolog, nuclear pore and COPII coat complex component K14004 SEC13; protein transport protein SEC13
E 101708985 Nup37; nucleoporin 37 K14302 NUP37; nuclear pore complex protein Nup37
E 101712108 Nup85; nucleoporin 85 K14304 NUP85; nuclear pore complex protein Nup85
E 101724478 Nup43; nucleoporin 43 K14305 NUP43; nuclear pore complex protein Nup43
E 101702165 Nup50; nucleoporin 50 K14295 NUP50; nuclear pore complex protein Nup50
E 101716369 Nup54; nucleoporin 54 K14308 NUP54; nuclear pore complex protein Nup54
E 101726712 Nup62cl; nucleoporin 62 C-terminal like K14306 NUP62; nuclear pore complex protein Nup62
E 101708524 Nup62; nucleoporin 62 K14306 NUP62; nuclear pore complex protein Nup62
E 101726684 Nup88; nucleoporin 88 K14318 NUP88; nuclear pore complex protein Nup88
E 101707074 Nup93; nucleoporin 93 K14309 NUP93; nuclear pore complex protein Nup93
E 101704068 Nup98; nucleoporin 98 K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E 101699022 Nup107; nucleoporin 107 K14301 NUP107; nuclear pore complex protein Nup107
E 101721025 Nup133; nucleoporin 133 K14300 NUP133; nuclear pore complex protein Nup133
E 101711408 Nup188; nucleoporin 188 K14311 NUP188; nuclear pore complex protein Nup188
E 101706615 Nup153; nucleoporin 153 K14296 NUP153; nuclear pore complex protein Nup153
E 101701623 Nup155; nucleoporin 155 K14312 NUP155; nuclear pore complex protein Nup155
E 101726409 Nup160; nucleoporin 160 K14303 NUP160; nuclear pore complex protein Nup160
E 101715801 Nup35; nucleoporin 35 K14313 NUP35; nuclear pore complex protein Nup53
E 101705038 Nup205; nucleoporin 205 K14310 NUP205; nuclear pore complex protein Nup205
E 101706032 Nup210l; nucleoporin 210 like K14314 NUP210; nuclear pore complex protein Nup210
E 101696567 Nup210; nucleoporin 210 K14314 NUP210; nuclear pore complex protein Nup210
E 101722062 Nup214; nucleoporin 214 K14317 NUP214; nuclear pore complex protein Nup214
E 101709796 Pom121c; nuclear envelope pore membrane protein POM 121C K14316 POM121; nuclear pore complex protein Nup121
E 101722584 Nup58; nucleoporin 58 K14307 NUPL1; nucleoporin p58/p45
E 101699758 Nupl2; nucleoporin like 2 K14321 NUPL2; nucleoporin-like protein 2
E 101707743 Ndc1; NDC1 transmembrane nucleoporin K14315 NDC1; nucleoporin NDC1
E 101726416 Seh1l; SEH1 like nucleoporin K14299 SEH1; nucleoporin SEH1
E 101698338 Ranbp2; RAN binding protein 2 K12172 RANBP2; E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-]
E 101697516 Senp2; SUMO1/sentrin/SMT3 specific peptidase 2 K03345 SENP2; sentrin-specific protease 2 (axin associating molecule) [EC:3.4.22.68]
E 101726045 Aaas; aladin WD repeat nucleoporin K14320 AAAS; aladin
E 101720737 Cetn3; centrin 3 K16466 CETN3; centrin-3
E 101722063 Gle1; GLE1, RNA export mediator K18723 GLE1; nucleoporin GLE1
E 101699957 Nxf1; nuclear RNA export factor 1 K14284 NXF; nuclear RNA export factor
E 101708221 Nxf2b; nuclear RNA export factor 2 K14284 NXF; nuclear RNA export factor
E 101701680 Nxt1; nuclear transport factor 2 like export factor 1 K14285 NXT1_2; NTF2-related export protein 1/2
E 101723716 NTF2-related export protein 2-like K14285 NXT1_2; NTF2-related export protein 1/2
E 101718176 Nxt2; nuclear transport factor 2 like export factor 2 K14285 NXT1_2; NTF2-related export protein 1/2
D Ran-mediated transport factors
E 101711994 Ran; RAN, member RAS oncogene family K07936 RAN; GTP-binding nuclear protein Ran
E 101704380 Anp32a; acidic nuclear phosphoprotein 32 family member A K18646 ANP32A_C_D; acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D
E 101722289 Anp32b; acidic nuclear phosphoprotein 32 family member B K18647 ANP32B; acidic leucine-rich nuclear phosphoprotein 32 family member B
E 106007565 Tnfsf13; tumor necrosis factor superfamily member 13 K05475 TNFSF13; tumor necrosis factor ligand superfamily member 13
E 101713794 Elavl1; ELAV like RNA binding protein 1 K13088 ELAVL1; ELAV-like protein 1
E 101703524 Elavl2; ELAV like RNA binding protein 2 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 101715196 Elavl3; ELAV like RNA binding protein 3 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 101725151 Elavl4; ELAV like RNA binding protein 4 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 101712781 Faf2; Fas associated factor family member 2 K18726 FAF2; FAS-associated factor 2
E 101712176 Vcp; valosin containing protein K13525 VCP; transitional endoplasmic reticulum ATPase
E 101701405 Vcpkmt; valosin containing protein lysine methyltransferase K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]
E 101710587 Tnpo2; transportin 2 K18727 TNPO2; transportin-2
E 101725005 Xpo1; exportin 1 K14290 XPO1; exportin-1
E 101707345 Xpo7; exportin 7 K18460 XPO7; exportin-7
E 101703296 Ranbp17; RAN binding protein 17 K24115 RANBP17; Ran-binding protein 17
E 101709248 Rangap1; Ran GTPase activating protein 1 K14319 RANGAP1; Ran GTPase-activating protein 1
E 101711796 Taf15; TATA-box binding protein associated factor 15 K14651 TAF15; transcription initiation factor TFIID subunit 15
D eIF4F and regulatory proteins
E 101715494 Eif4e1b; eukaryotic translation initiation factor 4E family member 1B K03259 EIF4E; translation initiation factor 4E
E 101713453 Eif4e; eukaryotic translation initiation factor 4E K03259 EIF4E; translation initiation factor 4E
E 101706987 Eif4e2; eukaryotic translation initiation factor 4E family member 2 K03259 EIF4E; translation initiation factor 4E
E 101724652 eukaryotic translation initiation factor 4E type 2-like K03259 EIF4E; translation initiation factor 4E
E 101719864 Eif4a2; eukaryotic translation initiation factor 4A2 K03257 EIF4A; translation initiation factor 4A
E 101697673 Eif4a1; eukaryotic translation initiation factor 4A1 K03257 EIF4A; translation initiation factor 4A
E 101709881 Eif4g1; eukaryotic translation initiation factor 4 gamma 1 K03260 EIF4G; translation initiation factor 4G
E 101722200 Eif4g3; eukaryotic translation initiation factor 4 gamma 3 K03260 EIF4G; translation initiation factor 4G
E 101704822 Eif4g2; eukaryotic translation initiation factor 4 gamma 2 K03260 EIF4G; translation initiation factor 4G
E 101705492 eukaryotic translation initiation factor 4 gamma 1-like K03260 EIF4G; translation initiation factor 4G
E 101725874 eukaryotic translation initiation factor 4 gamma 1-like K03260 EIF4G; translation initiation factor 4G
E 101698505 Eif4b; eukaryotic translation initiation factor 4B K03258 EIF4B; translation initiation factor 4B
E 101723081 eukaryotic translation initiation factor 4B-like K03258 EIF4B; translation initiation factor 4B
E 101697933 Eif4h; eukaryotic translation initiation factor 4H K24086 EIF4H; translation initiation factor 4H
E 101710614 Eif4ebp1; eukaryotic translation initiation factor 4E binding protein 1 K07205 EIF4EBP1; eukaryotic translation initiation factor 4E binding protein 1
E 101715691 Eif4ebp2; eukaryotic translation initiation factor 4E binding protein 2 K18644 EIF4EBP2; eukaryotic translation initiation factor 4E binding protein 2
E 101704244 uncharacterized LOC101704244 K18644 EIF4EBP2; eukaryotic translation initiation factor 4E binding protein 2
E 101701223 Eif4enif1; eukaryotic translation initiation factor 4E nuclear import factor 1 K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 101714568 eukaryotic translation initiation factor 4E transporter-like K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 101709904 Angel1; angel homolog 1 K18729 ANGEL; protein angel
E 101716063 Angel2; angel homolog 2 K18729 ANGEL; protein angel
E 101721153 Fxr1; FMR1 autosomal homolog 1 K15516 FMR; fragile X mental retardation protein
E 101699619 Fxr2; FMR1 autosomal homolog 2 K15516 FMR; fragile X mental retardation protein
E 101707722 Fmr1; fragile X mental retardation 1 K15516 FMR; fragile X mental retardation protein
E 101708581 Cyfip2; cytoplasmic FMR1 interacting protein 2 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 101715820 Cyfip1; cytoplasmic FMR1 interacting protein 1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 101715025 Gemin5; gem nuclear organelle associated protein 5 K13133 GEMIN5; gem associated protein 5
E 101716366 Tacc3; transforming acidic coiled-coil containing protein 3 K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 101721995 Cpeb4; cytoplasmic polyadenylation element binding protein 4 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 101724060 Cpeb2; cytoplasmic polyadenylation element binding protein 2 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 101726453 Cpeb3; cytoplasmic polyadenylation element binding protein 3 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 101699004 Cpeb1; cytoplasmic polyadenylation element binding protein 1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 101711814 ATP-dependent RNA helicase DDX3X-like K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 101700551 Ddx3x; DEAD-box helicase 3, X-linked K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 106010772 ATP-dependent RNA helicase DDX3X-like K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 101708887 Gigyf2; GRB10 interacting GYF protein 2 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 101710640 Gigyf1; GRB10 interacting GYF protein 1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 101721124 Pabpc1; poly(A) binding protein cytoplasmic 1 K13126 PABPC; polyadenylate-binding protein
E 101712162 Pabpc4; poly(A) binding protein cytoplasmic 4 K13126 PABPC; polyadenylate-binding protein
E 101706888 Pabpc4l; poly(A) binding protein cytoplasmic 4 like K13126 PABPC; polyadenylate-binding protein
E 101704744 Pabpc1l; poly(A) binding protein cytoplasmic 1 like K13126 PABPC; polyadenylate-binding protein
E 101717561 Pabpc5; poly(A) binding protein cytoplasmic 5 K13126 PABPC; polyadenylate-binding protein
E 101709193 polyadenylate-binding protein 1-like 2 K13126 PABPC; polyadenylate-binding protein
E 101709545 polyadenylate-binding protein 1-like 2 K13126 PABPC; polyadenylate-binding protein
E 101709498 Paip1; poly(A) binding protein interacting protein 1 K14322 PAIP1; polyadenylate-binding protein-interacting protein 1
E 101719097 Paip2; poly(A) binding protein interacting protein 2 K27470 PAIP2; polyadenylate-binding protein-interacting protein 2
E 101719245 Paip2b; poly(A) binding protein interacting protein 2B K27470 PAIP2; polyadenylate-binding protein-interacting protein 2
E 106007520 helicase SKI2W K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 101708785 Deaf1; DEAF1, transcription factor K23041 DEAF1; deformed epidermal autoregulatory factor 1
E 101712183 Mcts1; MCTS1, re-initiation and release factor K07575 MCTS; malignant T-cell-amplified sequence
E 101713911 Denr; density regulated re-initiation and release factor K24272 DENR; density-regulated protein
D APOBEC1-ACF complex
E 101708425 Apobec1; apolipoprotein B mRNA editing enzyme catalytic subunit 1 K16932 APOBEC1; C->U-editing enzyme APOBEC1 [EC:3.5.4.36]
E 101709076 A1cf; APOBEC1 complementation factor K24978 A1CF; APOBEC1 complementation factor
D Other transport factors
E 101726469 Pym1; PYM homolog 1, exon junction complex associated factor K14294 WIBG; partner of Y14 and mago
E 101711324 Hnrnpa1; heterogeneous nuclear ribonucleoprotein A1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 101703162 heterogeneous nuclear ribonucleoprotein A1-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 106007802 heterogeneous nuclear ribonucleoprotein A1-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 101697298 Hnrnpa3; heterogeneous nuclear ribonucleoprotein A3 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 101726433 heterogeneous nuclear ribonucleoprotein A1-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 101698816 Msi1; musashi RNA binding protein 1 K14411 MSI; RNA-binding protein Musashi
E 101712552 RNA-binding protein Musashi homolog 2 K14411 MSI; RNA-binding protein Musashi
E 101700390 Dazap1; DAZ associated protein 1 K14411 MSI; RNA-binding protein Musashi
E 106010626 RNA-binding protein Musashi homolog 2-like K14411 MSI; RNA-binding protein Musashi
E 101720674 Hbs1l; HBS1 like translational GTPase K14416 HBS1; elongation factor 1 alpha-like protein
E 101702882 Pelo; pelota homolog (Drosophila) K06965 PELO; protein pelota
E 101710651 Pabpn1l; poly(A) binding protein nuclear 1 like, cytoplasmic K14396 PABPN1; polyadenylate-binding protein 2
E 101714601 Pabpn1; poly(A) binding protein nuclear 1 K14396 PABPN1; polyadenylate-binding protein 2
E 101720257 Ddx19b; DEAD-box helicase 19B K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 101721083 Ddx19a; DEAD-box helicase 19A K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 101710403 Ddx25; DEAD-box helicase 25 K18656 DDX25; ATP-dependent RNA helicase DDX25 [EC:5.6.2.7]
E 101700264 Xab2; XPA binding protein 2 K12867 SYF1; pre-mRNA-splicing factor SYF1
E 101721909 Sarnp; SAP domain containing ribonucleoprotein K18732 SARNP; SAP domain-containing ribonucleoprotein
E 101717307 Rcc1; regulator of chromosome condensation 1 K11493 RCC1; regulator of chromosome condensation
E 101696541 Larp6; La ribonucleoprotein domain family member 6 K18733 LARP6; la-related protein 6
E 101697801 Pura; purine rich element binding protein A K21772 PURA; transcriptional activator protein Pur-alpha
E 101713182 Purb; purine rich element binding protein B K21799 PURB; transcriptional activator protein Pur-beta
E 101719573 Poldip3; DNA polymerase delta interacting protein 3 K22414 POLDIP3; polymerase delta-interacting protein 3
E 101698703 Zc3h11a; zinc finger CCCH-type containing 11A K22415 ZC3H11; zinc finger CCCH domain-containing protein 11
E 101726446 zinc finger CCCH domain-containing protein 11A K22415 ZC3H11; zinc finger CCCH domain-containing protein 11
E 101718889 Leng8; leukocyte receptor cluster member 8 homolog K23802 LENG8; SAC3 family protein LENG8/THP3
E 101718906 protein PAT1 homolog 2-like K24823 PATL2; protein PAT1 homolog 2
C Surveillance factors
D Surveillance complex
E 101712814 Etf1; eukaryotic translation termination factor 1 K03265 ETF1; peptide chain release factor subunit 1
E 101716870 eukaryotic peptide chain release factor subunit 1-like K03265 ETF1; peptide chain release factor subunit 1
E 101721398 Gspt1; G1 to S phase transition 1 K03267 ERF3; peptide chain release factor subunit 3
E 101700668 Gspt2; G1 to S phase transition 2 K03267 ERF3; peptide chain release factor subunit 3
E 101704366 Upf1; UPF1, RNA helicase and ATPase K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 101707612 Upf2; UPF2 regulator of nonsense transcripts homolog (yeast) K14327 UPF2; regulator of nonsense transcripts 2
E 101724600 Upf3a; UPF3 regulator of nonsense transcripts homolog A (yeast) K14328 UPF3; regulator of nonsense transcripts 3
E 101700790 Upf3b; UPF3 regulator of nonsense transcripts homolog B (yeast) K14328 UPF3; regulator of nonsense transcripts 3
D Protein phosphatase 2A
E 101707511 Ppp2ca; protein phosphatase 2 catalytic subunit alpha K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 101726191 Ppp2cb; protein phosphatase 2 catalytic subunit beta K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 101722244 Ppp2r1b; protein phosphatase 2 scaffold subunit Abeta K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 101703470 Ppp2r1a; protein phosphatase 2 scaffold subunit Aalpha K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 101709789 Ppp2r2d; protein phosphatase 2 regulatory subunit Bdelta K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 101711517 Ppp2r2c; protein phosphatase 2 regulatory subunit Bgamma K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 101708645 Ppp2r2a; protein phosphatase 2 regulatory subunit Balpha K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 101700573 Ppp2r2b; protein phosphatase 2 regulatory subunit Bbeta K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 101697272 Ppp2r3a; protein phosphatase 2 regulatory subunit B''alpha K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 101709952 Ppp2r3c; protein phosphatase 2 regulatory subunit B''gamma K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 101726501 Ppp2r3b; protein phosphatase 2 regulatory subunit B''beta K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 101726315 Ppp2r5c; protein phosphatase 2 regulatory subunit B'gamma K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 101711583 Ppp2r5e; protein phosphatase 2 regulatory subunit B'epsilon K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 101724057 Ppp2r5d; protein phosphatase 2 regulatory subunit B'delta K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 101706140 Ppp2r5b; protein phosphatase 2 regulatory subunit B'beta K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 101712512 Ppp2r5a; protein phosphatase 2 regulatory subunit B'alpha K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 101704930 serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform-like K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
D Other surveillance factors
E 101697910 Smg1; SMG1, nonsense mediated mRNA decay associated PI3K related kinase K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 101709860 Smg5; SMG5, nonsense mediated mRNA decay factor K11125 SMG5; protein SMG5
E 101703882 Smg6; SMG6, nonsense mediated mRNA decay factor K11124 SMG6; protein SMG6 [EC:3.1.-.-]
E 101717612 Smg7; SMG7, nonsense mediated mRNA decay factor K14409 SMG7; protein SMG7
E 101718333 Smg8; SMG8, nonsense mediated mRNA decay factor K18734 SMG8; protein SMG8
E 101707604 Smg9; SMG9, nonsense mediated mRNA decay factor K18735 SMG9; protein SMG9
E 101708887 Gigyf2; GRB10 interacting GYF protein 2 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 101710640 Gigyf1; GRB10 interacting GYF protein 1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 101713240 Secisbp2; SECIS binding protein 2 K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2
E 101715833 Secisbp2l; SECIS binding protein 2 like K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2
E 101711892 Dhx34; DExH-box helicase 34 K20101 DHX34; ATP-dependent RNA helicase DHX34 [EC:5.6.2.6]
E 101703464 Gtpbp1; GTP binding protein 1 K24887 GTPBP1; GTP-binding protein 1
C Factors involved in mRNA localization
D Cargo complex
E 101710010 Pum3; pumilio RNA binding family member 3 K14844 PUF6; pumilio homology domain family member 6
E 101697151 Myo5a; myosin VA K10357 MYO5; myosin V
E 101698272 Myo5c; myosin VC K10357 MYO5; myosin V
E 101722462 Myo5b; myosin VB K10357 MYO5; myosin V
E 101713727 Bicd1; BICD cargo adaptor 1 K18739 BICD; protein bicaudal D
E 101726404 Bicd2; BICD cargo adaptor 2 K18739 BICD; protein bicaudal D
E 101723421 Exd1; exonuclease 3'-5' domain containing 1 K18740 EXD1; exonuclease 3'-5' domain-containing protein 1
D Factors that have mRNA localization signals
E 101702483 Actg1; actin gamma 1 K05692 ACTB_G1; actin beta/gamma 1
E 101717255 Actb; actin beta K05692 ACTB_G1; actin beta/gamma 1
E 101702488 Mbp; myelin basic protein K17269 MBP; myelin basic protein
E 101718964 Vim; vimentin K07606 VIM; vimentin
E 101701172 metallothionein-1E K14739 MT1_2; metallothionein 1/2
E 101701546 Mt1e; metallothionein 1E K14739 MT1_2; metallothionein 1/2
E 101704740 Myc; v-myc avian myelocytomatosis viral oncogene homolog K04377 MYC; Myc proto-oncogene protein
E 101705795 Gdf1; growth differentiation factor 1 K05495 GDF1; growth differentiation factor 1
E 101701045 Tbx6; T-box 6 K10180 TBX6; T-box protein 6
E 101721183 Nanos1; nanos C2HC-type zinc finger 1 K18741 NANOS1; protein nanos 1
D Trans-acting binding proteins
E 101700128 Fubp1; far upstream element binding protein 1 K13210 FUBP; far upstream element-binding protein
E 101726262 Fubp3; far upstream element binding protein 3 K13210 FUBP; far upstream element-binding protein
E 101721809 Khsrp; KH-type splicing regulatory protein K13210 FUBP; far upstream element-binding protein
E 101720731 Eef1a2; eukaryotic translation elongation factor 1 alpha 2 K03231 EEF1A; elongation factor 1-alpha
E 101698880 elongation factor 1-alpha 1 K03231 EEF1A; elongation factor 1-alpha
E 101719918 Eef1a1; eukaryotic translation elongation factor 1 alpha 1 K03231 EEF1A; elongation factor 1-alpha
E 101726698 elongation factor 1-alpha 1 K03231 EEF1A; elongation factor 1-alpha
E 101716516 Eef1g; eukaryotic translation elongation factor 1 gamma K03233 EEF1G; elongation factor 1-gamma
E 101715746 elongation factor 1-gamma-like K03233 EEF1G; elongation factor 1-gamma
E 101715990 Hnrnpa2b1; heterogeneous nuclear ribonucleoprotein A2/B1 K13158 HNRNPA2B1; heterogeneous nuclear ribonucleoprotein A2/B1
E 101726528 Hax1; HCLS1 associated protein X-1 K16220 HAX1; HCLS1-associated protein X-1
E 101714156 Agfg1; ArfGAP with FG repeats 1 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
E 101724389 Stau2; staufen double-stranded RNA binding protein 2 K17597 STAU; double-stranded RNA-binding protein Staufen
E 101704614 Stau1; staufen double-stranded RNA binding protein 1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 101726090 Igf2bp3; insulin like growth factor 2 mRNA binding protein 3 K13197 IGF2BP3; insulin-like growth factor 2 mRNA-binding protein 3
E 101715554 Ptbp1; polypyrimidine tract binding protein 1 K13218 PTBP1; polypyrimidine tract-binding protein 1
E 101721995 Cpeb4; cytoplasmic polyadenylation element binding protein 4 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 101724060 Cpeb2; cytoplasmic polyadenylation element binding protein 2 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 101726453 Cpeb3; cytoplasmic polyadenylation element binding protein 3 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 101699004 Cpeb1; cytoplasmic polyadenylation element binding protein 1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
D Other mRNA localization factors
E 101721153 Fxr1; FMR1 autosomal homolog 1 K15516 FMR; fragile X mental retardation protein
E 101699619 Fxr2; FMR1 autosomal homolog 2 K15516 FMR; fragile X mental retardation protein
E 101707722 Fmr1; fragile X mental retardation 1 K15516 FMR; fragile X mental retardation protein
E 101708581 Cyfip2; cytoplasmic FMR1 interacting protein 2 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 101715820 Cyfip1; cytoplasmic FMR1 interacting protein 1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 101702918 Pcbp2; poly(rC) binding protein 2 K13162 PCBP2; poly(rC)-binding protein 2
E 101707912 Pcbp3; poly(rC) binding protein 3 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 101699011 Pcbp4; poly(rC) binding protein 4 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 101709274 Caprin1; cell cycle associated protein 1 K18743 CAPRIN1; caprin-1
E 101725572 Caprin2; caprin family member 2 K18744 CAPRIN2; caprin-2
E 101724789 Ybx1; Y-box binding protein 1 K09276 YBX1; Y-box-binding protein 1
C mRNA cycle factors
D Common to processing body (P body) and stress granule
E 101701152 Xrn1; 5'-3' exoribonuclease 1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E 101714223 Ago2; argonaute 2, RISC catalytic component K11593 ELF2C; eukaryotic translation initiation factor 2C
E 101716266 Ago3; argonaute 3, RISC catalytic component K11593 ELF2C; eukaryotic translation initiation factor 2C
E 101715713 Ago1; argonaute 1, RISC catalytic component K11593 ELF2C; eukaryotic translation initiation factor 2C
E 101715103 Ago4; argonaute 4, RISC catalytic component K11593 ELF2C; eukaryotic translation initiation factor 2C
E 101715494 Eif4e1b; eukaryotic translation initiation factor 4E family member 1B K03259 EIF4E; translation initiation factor 4E
E 101713453 Eif4e; eukaryotic translation initiation factor 4E K03259 EIF4E; translation initiation factor 4E
E 101706987 Eif4e2; eukaryotic translation initiation factor 4E family member 2 K03259 EIF4E; translation initiation factor 4E
E 101724652 eukaryotic translation initiation factor 4E type 2-like K03259 EIF4E; translation initiation factor 4E
E 101704366 Upf1; UPF1, RNA helicase and ATPase K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 101711814 ATP-dependent RNA helicase DDX3X-like K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 101700551 Ddx3x; DEAD-box helicase 3, X-linked K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 106010772 ATP-dependent RNA helicase DDX3X-like K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 101721046 Ddx6; DEAD-box helicase 6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 101710460 Mex3b; mex-3 RNA binding family member B K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 101725068 Mex3c; mex-3 RNA binding family member C K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 101719821 Mex3d; mex-3 RNA binding family member D K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 101700663 Mex3a; mex-3 RNA binding family member A K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 101707658 Fastk; Fas activated serine/threonine kinase K08290 FASTK; Fas-activated serine/threonine kinase [EC:2.7.11.8]
E 101696573 Lsm14b; LSM family member 14B K18749 LSM14; protein LSM14
E 101723527 Lsm14a; LSM14A, mRNA processing body assembly factor K18749 LSM14; protein LSM14
E 101696654 protein LSM14 homolog A-like K18749 LSM14; protein LSM14
E 101726771 Pcbp1; poly(rC) binding protein 1 K12889 PCBP1; poly(rC)-binding protein 1
E 101717304 poly(rC)-binding protein 1 K12889 PCBP1; poly(rC)-binding protein 1
E 101702918 Pcbp2; poly(rC) binding protein 2 K13162 PCBP2; poly(rC)-binding protein 2
E 101724789 Ybx1; Y-box binding protein 1 K09276 YBX1; Y-box-binding protein 1
E 101699485 Limd1; LIM domains containing 1 K16682 AJUBA; LIM domain-containing protein
E 101721218 Ajuba; ajuba LIM protein K16682 AJUBA; LIM domain-containing protein
E 101718505 Wtip; Wilms tumor 1 interacting protein K16682 AJUBA; LIM domain-containing protein
E 101708425 Apobec1; apolipoprotein B mRNA editing enzyme catalytic subunit 1 K16932 APOBEC1; C->U-editing enzyme APOBEC1 [EC:3.5.4.36]
E 101722862 DNA dC->dU-editing enzyme APOBEC-3F-like K18750 APOBEC3; C->U-editing enzyme APOBEC3 [EC:3.5.4.-]
E 101723345 DNA dC->dU-editing enzyme APOBEC-3C-like K18750 APOBEC3; C->U-editing enzyme APOBEC3 [EC:3.5.4.-]
E 101705303 Mov10; Mov10 RISC complex RNA helicase K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 101718334 Pnrc2; proline rich nuclear receptor coactivator 2 K18751 PNRC2; proline-rich nuclear receptor coactivator 2
E 101711877 proline-rich nuclear receptor coactivator 2-like K18751 PNRC2; proline-rich nuclear receptor coactivator 2
E 101713489 Tnpo1; transportin 1 K18752 TNPO1; transportin-1
E 101697910 Smg1; SMG1, nonsense mediated mRNA decay associated PI3K related kinase K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 101709860 Smg5; SMG5, nonsense mediated mRNA decay factor K11125 SMG5; protein SMG5
E 101703882 Smg6; SMG6, nonsense mediated mRNA decay factor K11124 SMG6; protein SMG6 [EC:3.1.-.-]
E 101717612 Smg7; SMG7, nonsense mediated mRNA decay factor K14409 SMG7; protein SMG7
E 101697183 Zfp36; ZFP36 ring finger protein K15308 TTP; tristetraprolin
E 101712905 Zfp36l1; ZFP36 ring finger protein like 1 K18753 ZFP36L; butyrate response factor
E 101718507 Zfp36l2; ZFP36 ring finger protein like 2 K18753 ZFP36L; butyrate response factor
E 101711416 Lin28a; lin-28 homolog A K18754 LIN28; protein lin-28
E 101718939 Lin28b; lin-28 homolog B K18754 LIN28; protein lin-28
E 101724095 protein lin-28 homolog A-like K18754 LIN28; protein lin-28
E 101697599 Htt; huntingtin K04533 HD; huntingtin
E 101697651 Ipo8; importin 8 K18755 IPO8; importin-8
E 101726690 Bicc1; BicC family RNA binding protein 1 K18756 BICC1; protein bicaudal C
E 101711324 Hnrnpa1; heterogeneous nuclear ribonucleoprotein A1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 101703162 heterogeneous nuclear ribonucleoprotein A1-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 106007802 heterogeneous nuclear ribonucleoprotein A1-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 101697298 Hnrnpa3; heterogeneous nuclear ribonucleoprotein A3 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 101726433 heterogeneous nuclear ribonucleoprotein A1-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 101707235 Prkaca; protein kinase cAMP-activated catalytic subunit alpha K04345 PKA; protein kinase A [EC:2.7.11.11]
E 101721558 Prkacb; protein kinase cAMP-activated catalytic subunit beta K04345 PKA; protein kinase A [EC:2.7.11.11]
E 101720343 Larp1; La ribonucleoprotein domain family member 1 K18757 LARP1; la-related protein 1
E 101723742 Larp1b; La ribonucleoprotein domain family member 1B K18757 LARP1; la-related protein 1
E 101717578 Atxn2l; ataxin 2 like K23625 ATXN2_2L; ataxin 2/2L
E 101726106 Atxn2; ataxin 2 K23625 ATXN2_2L; ataxin 2/2L
D P-body specific factors
E 101725496 m7GpppN-mRNA hydrolase-like K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 101697533 Dcp2; decapping mRNA 2 K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 101714261 Dcp1a; decapping mRNA 1A K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-]
E 101716540 Dcp1b; decapping mRNA 1B K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 101708340 Lsm1; LSM1 homolog, mRNA degradation associated K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 101700991 Lsm2; LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 101708310 Lsm3; LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 101720806 Lsm4; LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 101720314 Lsm5; LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 101699926 Lsm6; LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 101709127 Lsm7; LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 101708401 Lsm8; LSM8 homolog, U6 small nuclear RNA associated K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
E 106008778 U6 snRNA-associated Sm-like protein LSm8 K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
E 101710626 Klc1; kinesin light chain 1 K10407 KLC; kinesin light chain
E 101698001 Klc3; kinesin light chain 3 K10407 KLC; kinesin light chain
E 101720397 Klc4; kinesin light chain 4 K10407 KLC; kinesin light chain
E 101700298 Klc2; kinesin light chain 2 K10407 KLC; kinesin light chain
E 101697151 Myo5a; myosin VA K10357 MYO5; myosin V
E 101698272 Myo5c; myosin VC K10357 MYO5; myosin V
E 101722462 Myo5b; myosin VB K10357 MYO5; myosin V
E 101697674 tubulin alpha-3 chain K07374 TUBA; tubulin alpha
E 101709208 Tuba8; tubulin alpha 8 K07374 TUBA; tubulin alpha
E 101726622 tubulin alpha-1C chain-like K07374 TUBA; tubulin alpha
E 106010591 tubulin alpha-1D chain-like K07374 TUBA; tubulin alpha
E 101715424 tubulin alpha-1B chain-like K07374 TUBA; tubulin alpha
E 101716697 Tuba1b; tubulin alpha 1b K07374 TUBA; tubulin alpha
E 101720265 Tuba4a; tubulin alpha 4a K07374 TUBA; tubulin alpha
E 101707673 tubulin alpha-1C chain-like K07374 TUBA; tubulin alpha
E 101697931 Tubal3; tubulin alpha like 3 K07374 TUBA; tubulin alpha
E 101715767 uncharacterized LOC101715767 K07374 TUBA; tubulin alpha
E 101710474 tubulin alpha-3 chain-like K07374 TUBA; tubulin alpha
E 101701752 Lrrc74b; leucine rich repeat containing 74B K07374 TUBA; tubulin alpha
E 101721995 Cpeb4; cytoplasmic polyadenylation element binding protein 4 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 101724060 Cpeb2; cytoplasmic polyadenylation element binding protein 2 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 101726453 Cpeb3; cytoplasmic polyadenylation element binding protein 3 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 101699004 Cpeb1; cytoplasmic polyadenylation element binding protein 1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 101715025 Gemin5; gem nuclear organelle associated protein 5 K13133 GEMIN5; gem associated protein 5
E 101716366 Tacc3; transforming acidic coiled-coil containing protein 3 K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 101724472 Tnrc6a; trinucleotide repeat containing 6A K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 101720757 Tnrc6b; trinucleotide repeat containing 6B K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 101726218 Tnrc6c; trinucleotide repeat containing 6C K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 101713904 Cnot1; CCR4-NOT transcription complex subunit 1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 101722403 Cnot2; CCR4-NOT transcription complex subunit 2 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 101726127 Cnot3; CCR4-NOT transcription complex subunit 3 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 101711678 Cnot4; CCR4-NOT transcription complex subunit 4 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 101700106 Cnot6; CCR4-NOT transcription complex subunit 6 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 101708643 Cnot6l; CCR4-NOT transcription complex subunit 6 like K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 101717232 Cnot8; CCR4-NOT transcription complex subunit 8 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 101699835 Cnot7; CCR4-NOT transcription complex subunit 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 101721299 KIAA0355 ortholog K26671 GARRE1; granule associated Rac and RHOG effector protein 1
E 101704331 Dis3l2; DIS3 like 3'-5' exoribonuclease 2 K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-]
E 101708269 Pan2; PAN2 poly(A) specific ribonuclease subunit K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E 101711937 Pan3; PAN3 poly(A) specific ribonuclease subunit K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
E 101716692 Btg3; BTG anti-proliferation factor 3 K14443 TOB; protein Tob/BTG
E 101712701 protein BTG4-like K14443 TOB; protein Tob/BTG
E 101724408 Btg1; BTG anti-proliferation factor 1 K14443 TOB; protein Tob/BTG
E 101699455 protein Tob1-like K14443 TOB; protein Tob/BTG
E 101717914 Btg4; BTG anti-proliferation factor 4 K14443 TOB; protein Tob/BTG
E 101702273 Btg2; BTG anti-proliferation factor 2 K14443 TOB; protein Tob/BTG
E 101720365 Tob1; transducer of ERBB2, 1 K14443 TOB; protein Tob/BTG
E 101704991 protein BTG3-like K14443 TOB; protein Tob/BTG
E 101701223 Eif4enif1; eukaryotic translation initiation factor 4E nuclear import factor 1 K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 101714568 eukaryotic translation initiation factor 4E transporter-like K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 101707355 Patl1; PAT1 homolog 1, processing body mRNA decay factor K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 101705814 Edc3; enhancer of mRNA decapping 3 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 101702722 Edc4; enhancer of mRNA decapping 4 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 101717975 Nanos2; nanos C2HC-type zinc finger 2 K18760 NANOS2; protein nanos 2
E 101699943 Nanos3; nanos C2HC-type zinc finger 3 K18761 NANOS3; protein nanos 3
E 101707612 Upf2; UPF2 regulator of nonsense transcripts homolog (yeast) K14327 UPF2; regulator of nonsense transcripts 2
E 101724600 Upf3a; UPF3 regulator of nonsense transcripts homolog A (yeast) K14328 UPF3; regulator of nonsense transcripts 3
E 101700790 Upf3b; UPF3 regulator of nonsense transcripts homolog B (yeast) K14328 UPF3; regulator of nonsense transcripts 3
E 101709110 Trim21; tripartite motif containing 21 K10651 TRIM21; tripartite motif-containing protein 21 [EC:2.3.2.27]
E 101711956 Trim71; tripartite motif containing 71 K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27]
E 101697518 Polr2g; RNA polymerase II subunit G K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
E 101724844 Eif2ak2; eukaryotic translation initiation factor 2 alpha kinase 2 K16195 EIF2AK2; eukaryotic translation initiation factor 2-alpha kinase 2 [EC:2.7.11.1]
E 101698390 Zar1l; zygote arrest 1-like K18762 ZAR1; zygote arrest protein 1
E 101698857 Zar1; zygote arrest 1 K18762 ZAR1; zygote arrest protein 1
E 101711979 Ythdf1; YTH N6-methyladenosine RNA binding protein 1 K20102 YTHDF; YTH domain-containing family protein
E 101721610 Ythdf2; YTH N6-methyladenosine RNA binding protein 2 K20102 YTHDF; YTH domain-containing family protein
E 101722275 Ythdf3; YTH N6-methyladenosine RNA binding protein 3 K20102 YTHDF; YTH domain-containing family protein
D Stress granule specific factors
E 101709671 Tial1; TIA1 cytotoxic granule associated RNA binding protein like 1 K13201 TIA1; nucleolysin TIA-1/TIAR
E 101725408 Tia1; TIA1 cytotoxic granule associated RNA binding protein K13201 TIA1; nucleolysin TIA-1/TIAR
E 101721124 Pabpc1; poly(A) binding protein cytoplasmic 1 K13126 PABPC; polyadenylate-binding protein
E 101712162 Pabpc4; poly(A) binding protein cytoplasmic 4 K13126 PABPC; polyadenylate-binding protein
E 101706888 Pabpc4l; poly(A) binding protein cytoplasmic 4 like K13126 PABPC; polyadenylate-binding protein
E 101704744 Pabpc1l; poly(A) binding protein cytoplasmic 1 like K13126 PABPC; polyadenylate-binding protein
E 101717561 Pabpc5; poly(A) binding protein cytoplasmic 5 K13126 PABPC; polyadenylate-binding protein
E 101709193 polyadenylate-binding protein 1-like 2 K13126 PABPC; polyadenylate-binding protein
E 101709545 polyadenylate-binding protein 1-like 2 K13126 PABPC; polyadenylate-binding protein
E 101724389 Stau2; staufen double-stranded RNA binding protein 2 K17597 STAU; double-stranded RNA-binding protein Staufen
E 101704614 Stau1; staufen double-stranded RNA binding protein 1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 101721153 Fxr1; FMR1 autosomal homolog 1 K15516 FMR; fragile X mental retardation protein
E 101699619 Fxr2; FMR1 autosomal homolog 2 K15516 FMR; fragile X mental retardation protein
E 101707722 Fmr1; fragile X mental retardation 1 K15516 FMR; fragile X mental retardation protein
E 101713794 Elavl1; ELAV like RNA binding protein 1 K13088 ELAVL1; ELAV-like protein 1
E 101696790 G3bp1; G3BP stress granule assembly factor 1 K17265 G3BP1; Ras GTPase-activating protein-binding protein 1 [EC:5.6.2.5 5.6.2.3]
E 101697508 G3bp2; G3BP stress granule assembly factor 2 K24983 G3BP2; Ras GTPase-activating protein-binding protein 2
E 101699237 Eif2a; eukaryotic translation initiation factor 2A K15026 EIF2A; translation initiation factor 2A
E 101701323 Eif3b; eukaryotic translation initiation factor 3 subunit B K03253 EIF3B; translation initiation factor 3 subunit B
E 101719864 Eif4a2; eukaryotic translation initiation factor 4A2 K03257 EIF4A; translation initiation factor 4A
E 101697673 Eif4a1; eukaryotic translation initiation factor 4A1 K03257 EIF4A; translation initiation factor 4A
E 101719673 Eif4a3; eukaryotic translation initiation factor 4A3 K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 101698505 Eif4b; eukaryotic translation initiation factor 4B K03258 EIF4B; translation initiation factor 4B
E 101723081 eukaryotic translation initiation factor 4B-like K03258 EIF4B; translation initiation factor 4B
E 101709881 Eif4g1; eukaryotic translation initiation factor 4 gamma 1 K03260 EIF4G; translation initiation factor 4G
E 101722200 Eif4g3; eukaryotic translation initiation factor 4 gamma 3 K03260 EIF4G; translation initiation factor 4G
E 101704822 Eif4g2; eukaryotic translation initiation factor 4 gamma 2 K03260 EIF4G; translation initiation factor 4G
E 101705492 eukaryotic translation initiation factor 4 gamma 1-like K03260 EIF4G; translation initiation factor 4G
E 101725874 eukaryotic translation initiation factor 4 gamma 1-like K03260 EIF4G; translation initiation factor 4G
E 101712979 Rps6ka1; ribosomal protein S6 kinase A1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 101708473 Rps6ka2; ribosomal protein S6 kinase A2 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 101722051 Rps6ka3; ribosomal protein S6 kinase A3 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 101703020 Rps6ka6; ribosomal protein S6 kinase A6 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 101715834 Rack1; receptor for activated C kinase 1 K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein
E 101705156 Traf2; TNF receptor associated factor 2 K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27]
E 101699957 Nxf1; nuclear RNA export factor 1 K14284 NXF; nuclear RNA export factor
E 101708221 Nxf2b; nuclear RNA export factor 2 K14284 NXF; nuclear RNA export factor
E 101708442 Hdac6; histone deacetylase 6 K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98]
E 101713672 Tdrd3; tudor domain containing 3 K18404 TDRD3; tudor domain-containing protein 3
E 101698330 Larp4; La ribonucleoprotein domain family member 4 K18763 LARP4; la-related protein 4
E 101713971 Larp4b; La ribonucleoprotein domain family member 4B K18763 LARP4; la-related protein 4
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
E 101714261 Dcp1a; decapping mRNA 1A K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-]
E 101716540 Dcp1b; decapping mRNA 1B K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 101725496 m7GpppN-mRNA hydrolase-like K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 101697533 Dcp2; decapping mRNA 2 K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 101721046 Ddx6; DEAD-box helicase 6 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 101705814 Edc3; enhancer of mRNA decapping 3 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 101702722 Edc4; enhancer of mRNA decapping 4 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 101707355 Patl1; PAT1 homolog 1, processing body mRNA decay factor K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
D Lsm complex
E 101708340 Lsm1; LSM1 homolog, mRNA degradation associated K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 101700991 Lsm2; LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 101708310 Lsm3; LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 101720806 Lsm4; LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 101720314 Lsm5; LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 101699926 Lsm6; LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 101709127 Lsm7; LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 101708401 Lsm8; LSM8 homolog, U6 small nuclear RNA associated K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
E 106008778 U6 snRNA-associated Sm-like protein LSm8 K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
D 5' exonucleases
E 101701152 Xrn1; 5'-3' exoribonuclease 1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E 101697198 Xrn2; 5'-3' exoribonuclease 2 K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
E 101717221 U8 snoRNA-decapping enzyme-like K16855 NUDT16; U8 snoRNA-decapping enzyme [EC:3.6.1.62 3.6.1.64]
E 101709761 Nudt16; nudix hydrolase 16 K16855 NUDT16; U8 snoRNA-decapping enzyme [EC:3.6.1.62 3.6.1.64]
D Other 5'-3' decay factors
E 101715664 Dcps; decapping enzyme, scavenger K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E 101699823 Helz; helicase with zinc finger K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-]
C 3'-5' decay
D Core exosome factors
E 101725849 Exosc1; exosome component 1 K07573 CSL4; exosome complex component CSL4
E 101724777 Exosc2; exosome component 2 K03679 RRP4; exosome complex component RRP4
E 101707251 Exosc3; exosome component 3 K03681 RRP40; exosome complex component RRP40
E 101703302 Exosc4; exosome component 4 K11600 RRP41; exosome complex component RRP41
E 101705555 Exosc5; exosome component 5 K12590 RRP46; exosome complex component RRP46
E 101718639 Exosc6; exosome component 6 K12587 MTR3; exosome complex component MTR3
E 101703631 Exosc7; exosome component 7 K12589 RRP42; exosome complex component RRP42
E 101714894 Exosc8; exosome component 8 K12586 RRP43; exosome complex component RRP43
E 101718139 Exosc9; exosome component 9 K03678 RRP45; exosome complex component RRP45
D Exosome cofactors
E 101723210 Dis3; DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
E 101717347 Dis3l; DIS3 like exosome 3'-5' exoribonuclease K18681 DIS3L; DIS3-like exonuclease 1 [EC:3.1.13.-]
E 101725993 Exosc10; exosome component 10 K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]
E 101707831 C1d; C1D nuclear receptor corepressor K12592 C1D; exosome complex protein LRP1
E 101718979 Mphosph6; M-phase phosphoprotein 6 K12593 MPHOSPH6; M-phase phosphoprotein 6, animal type
E 101702087 Ddx60; probable ATP-dependent RNA helicase DDX60 K20103 DDX60; ATP-dependent RNA helicase DDX60 [EC:5.6.2.7]
E 101719867 probable ATP-dependent RNA helicase DDX60 K20103 DDX60; ATP-dependent RNA helicase DDX60 [EC:5.6.2.7]
D TRAMP complex
E 101716019 Papd7; poly(A) RNA polymerase D7, non-canonical K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 101713227 Papd5; poly(A) RNA polymerase D5, non-canonical K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 101700447 Zcchc7; zinc finger CCHC-type containing 7 K12597 AIR1_2; protein AIR1/2
E 101724541 Skiv2l2; Ski2 like RNA helicase 2 K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
D Ski complex
E 106007520 helicase SKI2W K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 101697569 Ttc37; tetratricopeptide repeat domain 37 K12600 SKI3; superkiller protein 3
E 101703745 Wdr61; WD repeat domain 61 K12602 WDR61; WD repeat-containing protein 61
D Ccr4-NOT complex
E 101700106 Cnot6; CCR4-NOT transcription complex subunit 6 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 101708643 Cnot6l; CCR4-NOT transcription complex subunit 6 like K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 101713904 Cnot1; CCR4-NOT transcription complex subunit 1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 101722403 Cnot2; CCR4-NOT transcription complex subunit 2 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 101726127 Cnot3; CCR4-NOT transcription complex subunit 3 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 101711678 Cnot4; CCR4-NOT transcription complex subunit 4 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 101717232 Cnot8; CCR4-NOT transcription complex subunit 8 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 101699835 Cnot7; CCR4-NOT transcription complex subunit 7 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 101704652 Cnot9; CCR4-NOT transcription complex subunit 9 K12606 RCD1; CCR4-NOT transcription complex subunit 9
E 101711354 Cnot10; CCR4-NOT transcription complex subunit 10 K12607 CNOT10; CCR4-NOT transcription complex subunit 10
D Pan complex
E 101708269 Pan2; PAN2 poly(A) specific ribonuclease subunit K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E 101711937 Pan3; PAN3 poly(A) specific ribonuclease subunit K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
D Other 3'-5' decay factors
E 101715275 Parn; poly(A)-specific ribonuclease K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E 101709845 Pnldc1; PARN like, ribonuclease domain containing 1 K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E 101714069 Dhx36; DEAH-box helicase 36 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 101716692 Btg3; BTG anti-proliferation factor 3 K14443 TOB; protein Tob/BTG
E 101712701 protein BTG4-like K14443 TOB; protein Tob/BTG
E 101724408 Btg1; BTG anti-proliferation factor 1 K14443 TOB; protein Tob/BTG
E 101699455 protein Tob1-like K14443 TOB; protein Tob/BTG
E 101717914 Btg4; BTG anti-proliferation factor 4 K14443 TOB; protein Tob/BTG
E 101702273 Btg2; BTG anti-proliferation factor 2 K14443 TOB; protein Tob/BTG
E 101720365 Tob1; transducer of ERBB2, 1 K14443 TOB; protein Tob/BTG
E 101704991 protein BTG3-like K14443 TOB; protein Tob/BTG
E 101724943 Csf2; colony stimulating factor 2 K05427 CSF2; granulocyte-macrophage colony-stimulating factor
E 101710110 Noct; nocturnin K18764 NOCT; nocturnin [EC:3.1.3.108]
E 101703353 Eri1; exoribonuclease 1 K18416 THEX1; 3'-5' exoribonuclease 1 [EC:3.1.-.-]
E 101703293 Eri2; ERI1 exoribonuclease family member 2 K18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-]
E 101715664 Dcps; decapping enzyme, scavenger K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E 101710298 Pde12; phosphodiesterase 12 K19612 PDE12; 2',5'-phosphodiesterase [EC:3.1.13.4 3.1.4.-]
E 101703036 Ireb2; iron responsive element binding protein 2 K22416 IREB2; iron-responsive element-binding protein 2
E 101699823 Helz; helicase with zinc finger K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-]
E 101722730 Helz2; helicase with zinc finger 2 K25165 HELZ2; 3'-5' exoribonuclease HELZ2 [EC:3.1.13.1 5.6.2.6]
E 101714673 Nrde2; NRDE-2, necessary for RNA interference, domain containing K26109 NRDE2; nuclear exosome regulator NRDE2
E 101707256 Samd4a; sterile alpha motif domain containing 4A K27396 SMG; protein Smaug
E 101699881 Samd4b; sterile alpha motif domain containing 4B K27396 SMG; protein Smaug
E 101698157 Focad; focadhesin K27498 FOCAD; focadhesin
C Other degradation factors
D RNases
E 101706346 Rnase1; ribonuclease A family member 1, pancreatic K01168 RNASE1_2; pancreatic ribonuclease [EC:4.6.1.18]
E 101707085 Rnase4; ribonuclease 4 K16632 RNASE4; ribonuclease 4 [EC:3.1.27.-]
E 101710540 ribonuclease K3 K01172 RNASE6_7_8; ribonuclease 6/7/8 [EC:3.1.27.-]
E 101706720 Rnase6; ribonuclease A family member k6 K01172 RNASE6_7_8; ribonuclease 6/7/8 [EC:3.1.27.-]
E 101723691 ribonuclease 7 K01172 RNASE6_7_8; ribonuclease 6/7/8 [EC:3.1.27.-]
E 101707802 Rnase11; ribonuclease A family member 11 (inactive) K16633 RNASE11; ribonuclease 11 [EC:3.1.27.-]
E 101726521 Zc3h12a; zinc finger CCCH-type containing 12A K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 101713271 Zc3h12c; zinc finger CCCH-type containing 12C K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 101713956 Zc3h12b; zinc finger CCCH-type containing 12B K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 101720591 Zc3h12d; zinc finger CCCH-type containing 12D K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
#
AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E 101726022 Drosha; drosha ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
E 101718042 Rexo2; RNA exonuclease 2 K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Helicases
D Other RNA degradosome components
E 101721709 Eno2; enolase 2 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 101719336 Eno1; enolase 1 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 101720130 Eno3; enolase 3 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 101705889 Pnpt1; polyribonucleotide nucleotidyltransferase 1 K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E 101724978 Pfkl; phosphofructokinase, liver type K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 101709405 Pfkp; phosphofructokinase, platelet K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 101705614 Pfkm; phosphofructokinase, muscle K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E 101715170 Hspa9; heat shock protein family A (Hsp70) member 9 K04043 dnaK; molecular chaperone DnaK
E 101706498 Hspd1; heat shock protein family D (Hsp60) member 1 K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Others
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
E 101724777 Exosc2; exosome component 2 K03679 RRP4; exosome complex component RRP4
E 101725849 Exosc1; exosome component 1 K07573 CSL4; exosome complex component CSL4
D Cofactors
E 101703302 Exosc4; exosome component 4 K11600 RRP41; exosome complex component RRP41
E 101703631 Exosc7; exosome component 7 K12589 RRP42; exosome complex component RRP42
D Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024