+E Transcription factors KO
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Transcription Factors - Kineococcus radiotolerans
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D Krad_3465 helix-turn-helix-domain containing protein AraC type K23237 melR; AraC family transcriptional regulator, melibiose operon regulatory protein
C LysR family
D Krad_4012 transcriptional regulator, LysR family K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
C DeoR family
D Krad_2162 transcriptional regulator, DeoR family K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor
D Krad_1535 transcriptional regulator, DeoR family K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
C LacI family
D Krad_3572 periplasmic binding protein/LacI transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Krad_0549 Alanine racemase K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Krad_0971 periplasmic binding protein/LacI transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Krad_0802 periplasmic binding protein/LacI transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Krad_0922 regulatory protein LacI K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Krad_4149 periplasmic binding protein/LacI transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Krad_3746 regulatory protein LacI K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Krad_3595 periplasmic binding protein/LacI transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Krad_3367 periplasmic binding protein/LacI transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Krad_2497 Alanine racemase K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Krad_0581 Alanine racemase K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
C GntR family
D Krad_0551 regulatory protein GntR HTH K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D Krad_1633 regulatory protein GntR HTH K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D Krad_4399 GntR domain protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D Krad_4197 GntR domain protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
C TetR/AcrR family
D Krad_0493 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D Krad_2189 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D Krad_0375 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
C Lrp/AsnC family
D Krad_0221 putative transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Krad_2178 putative transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
C LuxR family
C MarR family
D Krad_4466 transcriptional regulator, MarR family K22296 nicR; MarR family transcriptional regulator, lower aerobic nicotinate degradation pathway regulator
D Krad_3738 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D Krad_1915 putative transcriptional regulator, MerR family K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
D Krad_4230 putative transcriptional regulator, MerR family K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR
D Krad_2183 putative transcriptional regulator, MerR family K21744 tipA; MerR family transcriptional regulator, thiopeptide resistance regulator
D Krad_0738 putative transcriptional regulator, MerR family K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator
C Fur family
D Krad_3370 ferric uptake regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D Krad_0883 ferric uptake regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D Krad_4538 ferric uptake regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D Krad_0866 ferric uptake regulator, Fur family K22297 furA; Fur family transcriptional regulator, stress-responsive regulator
D Krad_4279 ferric uptake regulator, Fur family K22297 furA; Fur family transcriptional regulator, stress-responsive regulator
C IclR family
D Krad_2225 Transcriptional regulator IclR K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
C CRP/FNR family
D Krad_0424 putative transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
C Rrf2 family
C ArsR family
D Krad_4551 regulatory protein ArsR K21885 cmtR; ArsR family transcriptional regulator, cadmium/lead-responsive transcriptional repressor
D Krad_4571 regulatory protein ArsR K21885 cmtR; ArsR family transcriptional regulator, cadmium/lead-responsive transcriptional repressor
D Krad_4310 transcriptional regulator, TrmB K21885 cmtR; ArsR family transcriptional regulator, cadmium/lead-responsive transcriptional repressor
D Krad_4542 regulatory protein ArsR K21885 cmtR; ArsR family transcriptional regulator, cadmium/lead-responsive transcriptional repressor
D Krad_4577 regulatory protein ArsR K21885 cmtR; ArsR family transcriptional regulator, cadmium/lead-responsive transcriptional repressor
C XRE family
D Krad_3536 helix-turn-helix domain protein K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator
D Krad_1487 helix-turn-helix domain protein K27043 clgR; XRE family transcriptional regulator, stress-response regulator
C PadR family
D Krad_2816 transcriptional regulator, PadR-like family K10947 K10947; PadR family transcriptional regulator
C Other families
D Krad_3553 iron dependent repressor K26252 dtxR; DtxR family transcriptional regulator, iron-dependent repressor
D Krad_0982 iron dependent repressor K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D Krad_1643 transcriptional repressor, CopY family K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D Krad_3908 biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D Krad_0616 CoA-binding domain protein K01926 rex; redox-sensing transcriptional repressor
D Krad_4607 hypothetical protein K27097 espR; ESX-1-secreted protein regulator
D Krad_1779 hypothetical protein K07726 K07726; putative transcriptional regulator
D Krad_2888 putative transcriptional regulator, XRE family K07727 K07727; putative transcriptional regulator
D Krad_4290 transcriptional regulator, XRE family K07729 K07729; putative transcriptional regulator
D Krad_2034 transcriptional regulator, XRE family K07729 K07729; putative transcriptional regulator
D Krad_2467 transcriptional regulator, XRE family K07729 K07729; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
B Other transcription factors
C BglG family
C Others
D Krad_4662 transcriptional regulatory protein WhiB-like WhiB2 K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D Krad_0428 transcription factor WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D Krad_0737 transcription factor WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D Krad_3850 transcription factor WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D Krad_3795 transcription factor WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D Krad_0244 transcription factor WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D Krad_1766 transcription factor WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D Krad_2328 transcription factor WhiB K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D Krad_1181 transcription factor WhiB K18958 whiB7; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D Krad_3526 transcription factor WhiB K18958 whiB7; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D Krad_4587 protein of unknown function DUF156 K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D Krad_0784 protein of unknown function DUF156 K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D Krad_4079 transcriptional regulator, PucR family K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein
D Krad_2065 transcriptional regulator, PucR family K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein
D Krad_4506 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Krad_1762 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Krad_0898 transcriptional regulator, CarD family K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D Krad_3156 arginine repressor, ArgR K03402 argR; transcriptional regulator of arginine metabolism
D Krad_3406 heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D Krad_0855 transcriptional activator, TenA family K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D Krad_2878 putative transcriptional regulator, PaaX family K02616 paaX; phenylacetic acid degradation operon negative regulatory protein
D Krad_0132 phage shock protein C, PspC K03973 pspC; phage shock protein C
D Krad_3006 Uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D Krad_3774 protein of unknown function DUF179 K07735 algH; putative transcriptional regulator
D Krad_3190 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor
D Krad_1413 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor
D Krad_1508 ATP-cone domain protein K07738 nrdR; transcriptional repressor NrdR
D Krad_3208 MraZ protein K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 8, 2024
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Classification taken and modified from TRANSFAC 7.0