+E Transcription factors KO
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Transcription Factors - Chelativorans sp. BNC1
%
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D Meso_2572 transcriptional regulator, AraC family K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D Meso_2466 transcriptional regulator, AraC family K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D Meso_2488 transcriptional regulator, AraC family K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D Meso_2048 transcriptional regulator, AraC family K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D Meso_2413 transcriptional regulator, AraC family K07506 K07506; AraC family transcriptional regulator
D Meso_0574 transcriptional regulator, AraC family K07506 K07506; AraC family transcriptional regulator
D Meso_3689 transcriptional regulator, AraC family K07506 K07506; AraC family transcriptional regulator
D Meso_3569 DNA-O6-methylguanine--protein-cysteine S-methyltransferase / Transcriptional regulator Ada K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D Meso_3767 transcriptional regulator, AraC family with amidase-like domain K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator
C LysR family
D Meso_2377 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D Meso_2386 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D Meso_2482 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D Meso_4524 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D Meso_0465 transcriptional regulator, LysR family K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D Meso_0798 transcriptional regulator, LysR family K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D Meso_2549 transcriptional regulator, LysR family K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D Meso_4540 transcriptional regulator, LysR family K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
C DeoR family
D Meso_1590 transcriptional regulator, DeoR family K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
C LacI family
D Meso_2854 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Meso_1093 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Meso_0262 transcriptional regulator, LacI family K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
C GntR family
D Meso_2988 transcriptional regulator, histidine utilization repressor, GntR family K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D Meso_2976 transcriptional regulator, GntR family K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D Meso_3625 transcriptional regulator, GntR family K03710 K03710; GntR family transcriptional regulator
D Meso_0366 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D Meso_2520 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D Meso_1948 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D Meso_3282 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D Meso_4518 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D Meso_0071 transcriptional regulator, GntR family K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D Meso_4362 transcriptional regulator, GntR family K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D Meso_2933 transcriptional regulator, GntR family K15735 csiR; GntR family transcriptional regulator, carbon starvation induced regulator
C TetR/AcrR family
D Meso_2041 transcriptional regulator, TetR family K09017 rutR; TetR/AcrR family transcriptional regulator
D Meso_0128 transcriptional regulator, TetR family K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
D Meso_4073 transcriptional regulator, TetR family K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
C Lrp/AsnC family
D Meso_1324 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Meso_2418 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Meso_1429 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Meso_1566 transcriptional regulator, AsnC family K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
C LuxR family
D Meso_2311 transcriptional regulator, LuxR family K18098 bjaR1; LuxR family transcriptional regulator, quorum-sensing system regulator BjaR1
C MarR family
D Meso_3221 transcriptional regulator, MarR family K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D Meso_3564 transcriptional regulator, MarR family K22296 nicR; MarR family transcriptional regulator, lower aerobic nicotinate degradation pathway regulator
C MerR family
D Meso_4039 transcriptional regulator, MerR family K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D Meso_3892 transcriptional regulator, MerR family K19592 golS; MerR family transcriptional regulator, gold-responsive activator of gol and ges genes
C Fur family
D Meso_3947 manganese uptake regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D Meso_4436 ferric uptake regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D Meso_4003 putative ferric uptake regulator, Fur family K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D Meso_3940 ferric uptake regulator, Fur family K09826 irr; Fur family transcriptional regulator, iron response regulator
C IclR family
D Meso_3307 transcriptional regulator, IclR family K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D Meso_1841 transcriptional regulator, IclR family K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D Meso_4531 transcriptional regulator, IclR family K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D Meso_2822 transcriptional regulator, IclR family K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D Meso_2307 transcriptional regulator, IclR family K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D Meso_3645 transcriptional regulator, IclR family K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D Meso_0051 transcriptional regulator, IclR family K05818 mhpR; IclR family transcriptional regulator, mhp operon transcriptional activator
D Meso_1604 transcriptional regulator, IclR family K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
C CRP/FNR family
D Meso_2279 transcriptional regulator, Crp/Fnr family K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D Meso_2220 transcriptional regulator, Crp/Fnr family K15861 fixK; CRP/FNR family transcriptional regulator, nitrogen fixation regulation protein
D Meso_4277 transcriptional regulator, Crp/Fnr family K21564 nnrR; CRP/FNR family transcriptional regulator, nitrogen oxide reductase regulator
D Meso_2246 transcriptional regulator, Crp/Fnr family K21564 nnrR; CRP/FNR family transcriptional regulator, nitrogen oxide reductase regulator
C Rrf2 family
D Meso_4279 transcriptional regulator, BadM/Rrf2 family K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D Meso_1445 transcriptional regulator, BadM/Rrf2 family K13772 rirA; Rrf2 family transcriptional regulator, iron-responsive regulator
C ArsR family
D Meso_0326 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D Meso_4198 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D Meso_0974 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
C XRE family
D Meso_0310 transcriptional regulator, XRE family K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator
C PadR family
C Other families
D Meso_4423 iron (metal) dependent repressor, DtxR family K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D Meso_1036 biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
B Ribbon-helix-helix
C CopG family
C Other families
D Meso_1325 delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
C Others
D Meso_0756 protein of unknown function DUF156 K23239 frmR; FrmR/RcnR family transcriptional regulator, repressor of frmRAB operon
D Meso_3067 transcriptional regulator, BolA protein family K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D Meso_3468 chromosome segregation DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Meso_4146 ParB-like nuclease K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Meso_4594 putative plasmid stabilization protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Meso_4584 parB-like partition proteins K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Meso_0538 ParB family protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Meso_2346 putative DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Meso_2347 ParB-like nuclease K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Meso_3819 conserved hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Meso_4355 ParB family protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Meso_4191 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Meso_4317 ParB family protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Meso_4544 parB-like partition proteins K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Meso_3379 transcriptional regulator, CarD family K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D Meso_4017 heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D Meso_2202 GreA/GreB family elongation factor K06140 rnk; regulator of nucleoside diphosphate kinase
D Meso_2203 GreA/GreB family elongation factor K06140 rnk; regulator of nucleoside diphosphate kinase
D Meso_0497 phage transcriptional regulator, AlpA K07733 alpA; prophage regulatory protein
D Meso_3155 Transcriptional regulator-like protein K07734 paiB; transcriptional regulator
D Meso_0753 protein of unknown function DUF179 K07735 algH; putative transcriptional regulator
D Meso_1419 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor
D Meso_1135 Ribonucleotide reductase regulator NrdR-like protein K07738 nrdR; transcriptional repressor NrdR
D Meso_2016 protein MraZ K03925 mraZ; transcriptional regulator MraZ
D Meso_1687 Sel1-like repeat K25885 exoR; exopolysaccharide production negative regulator
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 8, 2024
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Classification taken and modified from TRANSFAC 7.0