+E Transcription factors KO
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Transcription Factors - Mesorhizobium japonicum MAFF 303099
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D mlr8517 modification methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D mlr7992 similar to DNA modification methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D mll6433 regulatory protein K23237 melR; AraC family transcriptional regulator, melibiose operon regulatory protein
D mll4902 transcription regulator (AraC/XylS family) K13652 K13652; AraC family transcriptional regulator
D mll8212 transcriptional regulator K13653 K13653; AraC family transcriptional regulator
D mlr1270 probable transcriptional regulator K07506 K07506; AraC family transcriptional regulator
D mll1074 probable transcriptional regulator K07506 K07506; AraC family transcriptional regulator
D mlr3180 O6-methylguanine-DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D mlr1858 O6-methylguanine-DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D mll3844 transcriptional regulator (araC-family) K13633 ftrA; AraC family transcriptional regulator, transcriptional activator FtrA
C LysR family
D mll4232 transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D mlr1973 glycine cleavage system transcription activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D mll6971 transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D mll4929 transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D mlr1832 probable transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D mll4894 transcriptional activator; glycine cleavage system transcription activator; GcvA K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D mlr0919 transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D mlr7672 transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D mll7779 transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D mll0129 transcriptional activator; AmpR K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D mll7205 regulatory protein K02623 pcaQ; LysR family transcriptional regulator, pca operon transcriptional activator
D mll6938 transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D mll7054 transcriptional regulator K05817 hcaR; LysR family transcriptional regulator, hca operon transcriptional activator
D mll6179 transcriptional regulator; NodD K14657 nodD; LysR family transcriptional regulator, nod-box dependent transcriptional activator
D mlr6182 transcriptional regulator; NodD K14657 nodD; LysR family transcriptional regulator, nod-box dependent transcriptional activator
D mlr6097 nitrogen assimilation control protein K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D mlr7346 transcriptional regulator K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
C DeoR family
D mll1922 deoxyribose operon repressor K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor
D mll0711 glycerol-3-phosphate regulon repressor K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D mlr5371 transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D mll7220 transcriptional regulator K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor
C LacI family
D mlr2242 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D mlr5115 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D mlr3045 transcriptional regulator (LacI-family) K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D mll4964 transcriptional regulator, LacI (ribose operon repressor) family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D mll4997 hypothetical protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D mll7360 hypothetical protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D mll7623 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D mlr8213 transcription regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D mlr3320 transcription regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D mlr1005 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D mlr1020 glucose-resistance amylase regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D mll5838 hypothetical protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D mll7541 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D mll1683 transcriptional regulator; GntR K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
C GntR family
D mll3341 transcriptional regulator (GntR family) K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein
D mlr9157 transcriptional regulator K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein
D mlr7110 transcriptional regulator K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D mll8317 transcriptional regulator K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D mll4768 transcriptional regulator (GntR family) K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D mll1745 transcription regulator K03710 K03710; GntR family transcriptional regulator
D mll6911 transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D mll5410 transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D mlr6174 transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D mll2434 probable transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D mlr1821 probable transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
C TetR/AcrR family
D mll2260 probable tetracycline repressor protein K18476 tetR; TetR/AcrR family transcriptional regulator, tetracycline repressor protein
D mll7613 transcriptional regulator K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D mlr1634 probable transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator
D mlr4666 transcriptional regulator (TetR-family) K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D mlr5353 transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D mlr2831 transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D mlr1953 probable transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D mlr4593 transcriptional regulator K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
C Lrp/AsnC family
D mll3910 transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D mlr1161 proline dehydrogenase transcriptional activator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D mll9538 transcriptional regulator homolog K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D mlr1825 probable transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D mll1492 probable transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D mll4830 transcriptional regulator (leucine-responsive) K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D mll7935 transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D mll7129 transcriptional regulator K15782 doeX; Lrp/AsnC family transcriptional regulator, regulator of ectoine-degradation genes
D mll5346 transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
D mll0557 transcriptional regulator, probable glutamate uptake regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
D mlr2428 probable transcriptional regulator K26601 azlB; Lrp/AsnC family transcriptional regulator, repressor for azl operon
C LuxR family
D mlr5637 transcriptional regulator K18098 bjaR1; LuxR family transcriptional regulator, quorum-sensing system regulator BjaR1
D mlr9544 probable transcriptional regulator K18098 bjaR1; LuxR family transcriptional regulator, quorum-sensing system regulator BjaR1
D mlr6102 transcriptional regulator K19732 traR; LuxR family transcriptional regulator, activator of conjugal transfer of Ti plasmids
C MarR family
D mll4876 transcriptional regulator K22296 nicR; MarR family transcriptional regulator, lower aerobic nicotinate degradation pathway regulator
D mll4280 transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D mlr2690 probable transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D mll5312 transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D mlr2720 probable transcriptional activator K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
C Fur family
D mll3299 transcriptional regulator (Fur family) K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D mlr5570 transcription regulator K09826 irr; Fur family transcriptional regulator, iron response regulator
C IclR family
D mll0250 transcription regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D mlr4184 transcriptional regulator; PcaR K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
C CRP/FNR family
D mll6632 Fnr-type transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D mlr6409 transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D mll6578 nitrogen fixation regulation protein; FixK K15861 fixK; CRP/FNR family transcriptional regulator, nitrogen fixation regulation protein
C Rrf2 family
D mlr1147 Aau3 protein K13772 rirA; Rrf2 family transcriptional regulator, iron-responsive regulator
C ArsR family
D mll2170 probable arsenate reductase K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
C XRE family
D mlr6529 hypothetical protein K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator
C PadR family
D mll2486 hypothetical protein K10947 K10947; PadR family transcriptional regulator
C Other families
D mll2499 hypothetical protein K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D mll1351 biotin-protein ligase; BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D mll1856 unknown protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D mll5837 Nif-specific regulatory protein; NifA K02584 nifA; Nif-specific regulatory protein
D mll5857 nif-specific regulatory protein; NifA K02584 nifA; Nif-specific regulatory protein
D mll1462 probable molybdenum transport regulator; MopA K02019 modE; molybdate transport system regulatory protein
B Ribbon-helix-helix
C CopG family
C Other families
D mll1160 proline dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
C Others
D mlr3565 hypothetical protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D mll4477 chromosome partitioning protein; ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D mlr9703 putative plasmid stabilization protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D mlr6157 similar to partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D mll9352 replication protein B K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D mll9653 replication protein B K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D mlr3857 transcriptional factor regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D mll4621 repressor protein of class I heat shock genes K03705 hrcA; heat-inducible transcriptional repressor
D mll3994 nucleoside diphosphate kinase regulator K06140 rnk; regulator of nucleoside diphosphate kinase
D mlr6176 transcriptional regulator K07734 paiB; transcriptional regulator
D mll0013 transcriptional regulator K07734 paiB; transcriptional regulator
D mlr7511 hypothetical protein K07735 algH; putative transcriptional regulator
D mll0773 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D mlr8403 hypothetical protein K07738 nrdR; transcriptional repressor NrdR
D mll1100 exopolysaccharide regulatory protein; ExoR K25885 exoR; exopolysaccharide production negative regulator
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 8, 2024
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Classification taken and modified from TRANSFAC 7.0