+E
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Transcription Machinery - Mus musculus (house mouse)</h2>
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A<b>Eukaryotic type</b>
B  RNA polymerase II system
C    RNA polymerase II
D      Core subunits
E        20020 Polr2a; polymerase (RNA) II (DNA directed) polypeptide A	K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] 
E        231329 Polr2b; polymerase (RNA) II (DNA directed) polypeptide B	K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] 
E        20021 Polr2c; polymerase (RNA) II (DNA directed) polypeptide C	K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3 
E        20022 Polr2j; polymerase (RNA) II (DNA directed) polypeptide J	K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11 
D      Pol II specific subunits
E        69241 Polr2d; polymerase (RNA) II (DNA directed) polypeptide D	K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4 
E        67710 Polr2g; polymerase (RNA) II (DNA directed) polypeptide G	K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
E        69920 Polr2i; polymerase (RNA) II (DNA directed) polypeptide I	K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9 
E        28015 Polr2m; polymerase (RNA) II (DNA directed) polypeptide M	K21987 POLR2M; DNA-directed RNA polymerase II subunit GRINL1A 
D      Pol I, II, III common subunits
E        66420 Polr2e; polymerase (RNA) II (DNA directed) polypeptide E	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        69833 Polr2f; polymerase (RNA) II (DNA directed) polypeptide F	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        245841 Polr2h; polymerase (RNA) II (DNA directed) polypeptide H	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        17749 Polr2k; polymerase (RNA) II (DNA directed) polypeptide K	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        66491 Polr2l; polymerase (RNA) II (DNA directed) polypeptide L	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
D      Pol IV and V specific subunits
C    Basal transcription factors
D      TFIIA
E        71828 Gtf2a1l; general transcription factor IIA, 1-like	K03122 TFIIA1; transcription initiation factor TFIIA large subunit 
E        83602 Gtf2a1; general transcription factor II A, 1	K03122 TFIIA1; transcription initiation factor TFIIA large subunit 
E        235459 Gtf2a2; general transcription factor II A, 2	K03123 TFIIA2; transcription initiation factor TFIIA small subunit 
D      TFIIB
E        229906 Gtf2b; general transcription factor IIB	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFIID
E        21374 Tbp; TATA box binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        237336 Tbpl1; TATA box binding protein-like 1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        227606 Tbpl2; TATA box binding protein like 2	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        270627 Taf1; TATA-box binding protein associated factor 1	K03125 TAF1; transcription initiation factor TFIID subunit 1 [EC:2.3.1.48 2.7.11.1] 
E        319944 Taf2; TATA-box binding protein associated factor 2	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        209361 Taf3; TATA-box binding protein associated factor 3	K14650 TAF3; transcription initiation factor TFIID subunit 3 
E        72504 Taf4b; TATA-box binding protein associated factor 4b	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        228980 Taf4; TATA-box binding protein associated factor 4	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        102162 Taf5l; TATA-box binding protein associated factor 5 like	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        226182 Taf5; TATA-box binding protein associated factor 5	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        21343 Taf6; TATA-box binding protein associated factor 6	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        225895 Taf6l; TATA-box binding protein associated factor 6 like	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        74469 Taf7l; TATA-box binding protein associated factor 7 like	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        24074 Taf7; TATA-box binding protein associated factor 7	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        619332 Taf7l2; Taf7l2	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        63856 Taf8; TATA-box binding protein associated factor 8	K14649 TAF8; transcription initiation factor TFIID subunit 8 
E        108143 Taf9; TATA-box binding protein associated factor 9	K14535 TAF9; transcription initiation factor TFIID subunit 9 
E        407786 Taf9b; TATA-box binding protein associated factor 9B	K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
E        24075 Taf10; TATA-box binding protein associated factor 10	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        68776 Taf11; TATA-box binding protein associated factor 11	K03135 TAF11; transcription initiation factor TFIID subunit 11 
E        66464 Taf12; TATA-box binding protein associated factor 12	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        99730 Taf13; TATA-box binding protein associated factor 13	K03127 TAF13; transcription initiation factor TFIID subunit 13 
E        118568148 transcription initiation factor TFIID subunit 13-like	K03127 TAF13; transcription initiation factor TFIID subunit 13 
E        70439 Taf15; TATA-box binding protein associated factor 15	K14651 TAF15; transcription initiation factor TFIID subunit 15 
D      TFIIE
E        74197 Gtf2e1; general transcription factor II E, polypeptide 1 (alpha subunit)	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        99169 expressed sequence AU015228	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        68153 Gtf2e2; general transcription factor II E, polypeptide 2 (beta subunit)	K03137 TFIIE2; transcription initiation factor TFIIE subunit beta 
D      TFIIF
E        98053 Gtf2f1; general transcription factor IIF, polypeptide 1	K03138 TFIIF1; transcription initiation factor TFIIF subunit alpha 
E        68705 Gtf2f2; general transcription factor IIF, polypeptide 2	K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-] 
D      TFIIH
E        14884 Gtf2h1; general transcription factor II H, polypeptide 1	K03141 TFIIH1; transcription initiation factor TFIIH subunit 1 
E        23894 Gtf2h2; general transcription factor II H, polypeptide 2	K03142 TFIIH2; transcription initiation factor TFIIH subunit 2 
E        209357 Gtf2h3; general transcription factor IIH, polypeptide 3	K03143 TFIIH3; transcription initiation factor TFIIH subunit 3 
E        14885 Gtf2h4; general transcription factor II H, polypeptide 4	K03144 TFIIH4; transcription initiation factor TFIIH subunit 4 
E        13872 Ercc3; excision repair cross-complementing rodent repair deficiency, complementation group 3	K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] 
E        13871 Ercc2; excision repair cross-complementing rodent repair deficiency, complementation group 2	K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] 
E        66467 Gtf2h5; general transcription factor IIH, polypeptide 5	K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit 
E        12572 Cdk7; cyclin dependent kinase 7	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
E        17420 Mnat1; menage a trois 1	K10842 MNAT1; CDK-activating kinase assembly factor MAT1 
E        66671 Ccnh; cyclin H	K06634 CCNH; cyclin H 
C    Mediator complex
D      Head
E        69792 Med6; mediator complex subunit 6	K15128 MED6; mediator of RNA polymerase II transcription subunit 6 
E        80509 Med8; mediator complex subunit 8	K15129 MED8; mediator of RNA polymerase II transcription subunit 8 
E        66172 Med11; mediator complex subunit 11	K15131 MED11; mediator of RNA polymerase II transcription subunit 11 
E        234959 Med17; mediator complex subunit 17	K15133 MED17; mediator of RNA polymerase II transcription subunit 17 
E        67219 Med18; mediator complex subunit 18	K15135 MED18; mediator of RNA polymerase II transcription subunit 18 
E        381379 Med19; mediator complex subunit 19	K15137 MED19; mediator of RNA polymerase II transcription subunit 19 
E        56771 Med20; mediator complex subunit 20	K13528 MED20; mediator of RNA polymerase II transcription subunit 20 
E        20933 Med22; mediator complex subunit 22	K15139 MED22; mediator of RNA polymerase II transcription subunit 22 
E        66999 Med28; mediator complex subunit 28	K15141 MED28; mediator of RNA polymerase II transcription subunit 28 
E        67224 Med29; mediator complex subunit 29	K15142 MED29; mediator of RNA polymerase II transcription subunit 29 
E        69790 Med30; mediator complex subunit 30	K15143 MED30; mediator of RNA polymerase II transcription subunit 30 
D      Middle
E        19014 Med1; mediator complex subunit 1	K15144 MED1; mediator of RNA polymerase II transcription subunit 1 
E        67381 Med4; mediator complex subunit 4	K15146 MED4; mediator of RNA polymerase II transcription subunit 4 
E        66213 Med7; mediator complex subunit 7	K15148 MED7; mediator of RNA polymerase II transcription subunit 7 
E        192191 Med9; mediator complex subunit 9	K15149 MED9; mediator of RNA polymerase II transcription subunit 9 
E        28077 Med10; mediator complex subunit 10	K15151 MED10; mediator of RNA polymerase II transcription subunit 10 
E        108098 Med21; mediator complex subunit 21	K15152 MED21; mediator of RNA polymerase II transcription subunit 21 
E        67279 Med31; mediator complex subunit 31	K15153 MED31; mediator of RNA polymerase II transcription subunit 31 
D      Tail
E        26896 Med14; mediator complex subunit 14	K15156 MED14; mediator of RNA polymerase II transcription subunit 14 
E        94112 Med15; mediator complex subunit 15	K15157 MED15; mediator of RNA polymerase II transcription subunit 15 
E        216154 Med16; mediator complex subunit 16	K15159 MED16; mediator of RNA polymerase II transcription subunit 16 
D      CDK-module
E        264064 Cdk8; cyclin dependent kinase 8	K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23] 
E        78334 Cdk19; cyclin dependent kinase 19	K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23] 
E        51813 Ccnc; cyclin C	K15161 CCNC; cyclin-C 
E        329650 Med12l; mediator complex subunit 12-like	K15162 MED12; mediator of RNA polymerase II transcription subunit 12 
E        59024 Med12; mediator complex subunit 12	K15162 MED12; mediator of RNA polymerase II transcription subunit 12 
E        327987 Med13; mediator complex subunit 13	K15164 MED13; mediator of RNA polymerase II transcription subunit 13 
E        76199 Med13l; mediator complex subunit 13-like	K15164 MED13; mediator of RNA polymerase II transcription subunit 13 
D      Other mediators
E        70208 Med23; mediator complex subunit 23	K15166 MED23; mediator of RNA polymerase II transcription subunit 23 
E        23989 Med24; mediator complex subunit 24	K15167 MED24; mediator of RNA polymerase II transcription subunit 24 
E        75613 Med25; mediator complex subunit 25	K15168 MED25; mediator of RNA polymerase II transcription subunit 25 
E        70625 Med26; mediator complex subunit 26	K15169 MED26; mediator of RNA polymerase II transcription subunit 26 
E        68975 Med27; mediator complex subunit 27	K15170 MED27; mediator of RNA polymerase II transcription subunit 27 
C    Coactivators
D      SAGA/TFTC/STAGA complex
E        14534 Kat2a; K(lysine) acetyltransferase 2A	K06062 PCAF; histone acetyltransferase [EC:2.3.1.48] 
E        18519 Kat2b; K(lysine) acetyltransferase 2B	K06062 PCAF; histone acetyltransferase [EC:2.3.1.48] 
E        100683 Trrap; transformation/transcription domain-associated protein	K08874 TRRAP; transformation/transcription domain-associated protein 
E        109115 Supt3; SPT3, SAGA and STAGA complex component	K11313 SUPT3H; transcription initiation protein SPT3 
E        217031 Tada2a; transcriptional adaptor 2A	K11314 TADA2A; transcriptional adapter 2-alpha 
E        231151 Tada2b; transcriptional adaptor 2B	K15127 TADA2B; transcriptional adapter 2-beta 
E        101206 Tada3; transcriptional adaptor 3	K11315 TADA3; transcriptional adapter 3 
E        27878 Tada1; transcriptional adaptor 1	K11317 TADA1; transcriptional adapter 1 
E        319944 Taf2; TATA-box binding protein associated factor 2	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        72504 Taf4b; TATA-box binding protein associated factor 4b	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        228980 Taf4; TATA-box binding protein associated factor 4	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        102162 Taf5l; TATA-box binding protein associated factor 5 like	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        226182 Taf5; TATA-box binding protein associated factor 5	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        21343 Taf6; TATA-box binding protein associated factor 6	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        225895 Taf6l; TATA-box binding protein associated factor 6 like	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        74469 Taf7l; TATA-box binding protein associated factor 7 like	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        24074 Taf7; TATA-box binding protein associated factor 7	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        619332 Taf7l2; Taf7l2	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        108143 Taf9; TATA-box binding protein associated factor 9	K14535 TAF9; transcription initiation factor TFIID subunit 9 
E        407786 Taf9b; TATA-box binding protein associated factor 9B	K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
E        24075 Taf10; TATA-box binding protein associated factor 10	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        66464 Taf12; TATA-box binding protein associated factor 12	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        217218 Atxn7l3; ataxin 7-like 3	K11363 SGF11; SAGA-associated factor 11 
E        75565 Sgf29; SAGA complex associated factor 29	K11364 SGF29; SAGA-associated factor 29 
E        72195 Supt7l; SPT7-like, STAGA complex gamma subunit	K11316 SUPT7L; STAGA complex 65 subunit gamma 
E        246103 Atxn7; ataxin 7	K11318 ATXN7; ataxin-7 
E        380753 Atxn7l1; ataxin 7-like 1	K11318 ATXN7; ataxin-7 
E        72522 Atxn7l2; ataxin 7-like 2	K11318 ATXN7; ataxin-7 
E        12648 Chd1; chromodomain helicase DNA binding protein 1	K11367 CHD1; chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-] 
E        223527 Eny2; ENY2 transcription and export complex 2 subunit	K11368 ENY2; enhancer of yellow 2 transcription factor 
E        216825 Usp22; ubiquitin specific peptidase 22	K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] 
E        635253 Usp51; ubiquitin specific protease 51	K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] 
E        54651 Usp27x; ubiquitin specific peptidase 27, X chromosome	K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] 
E        101943 Sf3b3; splicing factor 3b, subunit 3	K12830 SF3B3; splicing factor 3B subunit 3 
D      BAF/PBAF complex
E        67155 Smarca2; SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	K11647 SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-] 
E        20586 Smarca4; SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	K11647 SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-] 
E        20587 Smarcb1; SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
E        20588 Smarcc1; SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        68094 Smarcc2; SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        83797 Smarcd1; SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        83796 Smarcd2; SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        66993 Smarcd3; SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        57376 Smarce1; SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	K11651 SMARCE1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 
E        11465 Actg1; actin, gamma, cytoplasmic 1	K05692 ACTB_G1; actin beta/gamma 1 
E        11461 Actb; actin, beta	K05692 ACTB_G1; actin beta/gamma 1 
E        56456 Actl6a; actin-like 6A	K11340 ACTL6A; actin-like protein 6A 
E        83766 Actl6b; actin-like 6B	K11652 ACTL6B; actin-like protein 6B 
E        239985 Arid1b; AT-rich interaction domain 1B	K11653 ARID1; AT-rich interactive domain-containing protein 1 
E        93760 Arid1a; AT-rich interaction domain 1A	K11653 ARID1; AT-rich interactive domain-containing protein 1 
E        77044 Arid2; AT-rich interaction domain 2	K11765 ARID2; AT-rich interactive domain-containing protein 2 
E        66923 Pbrm1; polybromo 1	K11757 PBRM1; protein polybromo-1 
D      SWI/SNF complex
E        20587 Smarcb1; SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
D      RSC complex
D      Others
E        20024 Sub1; SUB1 homolog, transcriptional regulator	K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15 
E        67500 Ccar1; cell division cycle and apoptosis regulator 1	K25827 CCAR1; cell division cycle and apoptosis regulator protein 1 
E        67488 Calcoco1; calcium binding and coiled coil domain 1	K25828 CALCOCO1; calcium-binding and coiled-coil domain-containing protein 1 
C    Other transcription-related factors
D      Transcription elongation factors
E        21399 Tcea1; transcription elongation factor A (SII) 1	K03145 TFIIS; transcription elongation factor S-II 
E        21400 Tcea2; transcription elongation factor A (SII), 2	K03145 TFIIS; transcription elongation factor S-II 
E        21401 Tcea3; transcription elongation factor A (SII), 3	K03145 TFIIS; transcription elongation factor S-II 
E        20922 Supt4a; SPT4A, DSIF elongation factor subunit	K15171 SUPT4H1; transcription elongation factor SPT4 
E        100041294 Supt4b; SPT4B, DSIF elongation factor subunit	K15171 SUPT4H1; transcription elongation factor SPT4 
E        20924 Supt5; suppressor of Ty 5, DSIF elongation factor subunit	K15172 SUPT5H; transcription elongation factor SPT5 
E        20926 Supt6; SPT6, histone chaperone and transcription elongation factor	K11292 SUPT6H; transcription elongation factor SPT6 
D      Transcription termination factor
E        74044 Ttf2; transcription termination factor, RNA polymerase II	K15173 TTF2; transcription termination factor 2 [EC:5.6.2.-] 
E        74737 Pcf11; PCF11 cleavage and polyadenylation factor subunit	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        94230 Cpsf1; cleavage and polyadenylation specific factor 1	K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 
E        54451 Cpsf3; cleavage and polyadenylation specificity factor 3	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        54188 Cpsf4; cleavage and polyadenylation specific factor 4	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        19045 Ppp1ca; protein phosphatase 1 catalytic subunit alpha	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        19046 Ppp1cb; protein phosphatase 1 catalytic subunit beta	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        19047 Ppp1cc; protein phosphatase 1 catalytic subunit gamma	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        434233 Ppp1ccb; protein phosphatase 1 catalytic subunit gamma B	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        68188 Sympk; symplekin	K06100 SYMPK; symplekin 
E        68991 Ssu72; Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
E        24128 Xrn2; 5'-3' exoribonuclease 2	K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] 
E        112403 Dxo; decapping exoribonuclease	K14845 RAI1; RAT1-interacting protein 
E        70470 Rprd1b; regulation of nuclear pre-mRNA domain containing 1B	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        225283 Rprd1a; regulation of nuclear pre-mRNA domain containing 1A	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        71514 Sfpq; splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	K13219 SFPQ; splicing factor, proline- and glutamine-rich 
E        106583 Scaf8; SR-related CTD-associated factor 8	K13191 RBM16; RNA-binding protein 16 
E        224432 Scaf4; SR-related CTD-associated factor 4	K13167 SCAF4; SR-related and CTD-associated factor 4 
E        269254 Setx; senataxin	K10706 SETX; senataxin [EC:5.6.2.-] 
E        23988 Pin1; peptidyl-prolyl cis/trans isomerase, NIMA-interacting 1	K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8] 
E        241593 Pin1rt1; peptidyl-prolyl cis/trans isomerase, NIMA-interacting 1, retrogene 1	K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8] 
D      PAF1 complex
E        54624 Paf1; Paf1, RNA polymerase II complex component	K15174 PAF1; RNA polymerase II-associated factor 1 
E        214498 Cdc73; cell division cycle 73, Paf1/RNA polymerase II complex component	K15175 CDC73; parafibromin 
E        22083 Ctr9; CTR9 homolog, Paf1/RNA polymerase II complex component	K15176 CTR9; RNA polymerase-associated protein CTR9 
E        235497 Leo1; Leo1, Paf1/RNA polymerase II complex component	K15177 LEO1; RNA polymerase-associated protein LEO1 
E        666190 Gm7972; predicted gene 7972	K15177 LEO1; RNA polymerase-associated protein LEO1 
E        76246 Rtf1; RTF1, Paf1/RNA polymerase II complex component	K15178 RTF1; RNA polymerase-associated protein RTF1 
D      NELF complex
E        24116 Nelfa; negative elongation factor complex member A, Whsc2	K15179 WHSC2; negative elongation factor A 
E        58202 Nelfb; negative elongation factor complex member B	K15180 COBRA1; negative elongation factor B 
E        57314 Nelfcd; negative elongation factor complex member C/D, Th1l	K15181 TH1L; negative elongation factor C/D 
E        27632 Nelfe; negative elongation factor complex member E, Rdbp	K15182 RDBP; negative elongation factor E 
D      Super elongation complex (SEC)
E        13716 Ell; elongation factor RNA polymerase II	K15183 ELL; RNA polymerase II elongation factor ELL 
E        192657 Ell2; elongation factor for RNA polymerase II 2	K15183 ELL; RNA polymerase II elongation factor ELL 
E        269344 Ell3; elongation factor RNA polymerase II-like 3	K15183 ELL; RNA polymerase II elongation factor ELL 
E        17355 Aff1; AF4/FMR2 family, member 1	K15184 AFF1; AF4/FMR2 family member 1 
E        93736 Aff4; AF4/FMR2 family, member 4	K15185 AFF4; AF4/FMR2 family member 4 
E        106389 Eaf2; ELL associated factor 2	K15186 EAF; ELL-associated factor 
E        74427 Eaf1; ELL associated factor 1	K15186 EAF; ELL-associated factor 
E        64144 Mllt1; myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1	K15187 MLLT1_3; YEATS domain-containing protein 1/3 
E        70122 Mllt3; myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	K15187 MLLT1_3; YEATS domain-containing protein 1/3 
E        12455 Ccnt1; cyclin T1	K15188 CCNT; cyclin T 
E        72949 Ccnt2; cyclin T2	K15188 CCNT; cyclin T 
E        107951 Cdk9; cyclin dependent kinase 9	K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23] 
D      Little elongation complex (LEC)
E        13716 Ell; elongation factor RNA polymerase II	K15183 ELL; RNA polymerase II elongation factor ELL 
E        192657 Ell2; elongation factor for RNA polymerase II 2	K15183 ELL; RNA polymerase II elongation factor ELL 
E        269344 Ell3; elongation factor RNA polymerase II-like 3	K15183 ELL; RNA polymerase II elongation factor ELL 
E        218333 Ice1; interactor of little elongation complex ELL subunit 1	K26143 ICE1; little elongation complex subunit 1 
E        93697 Ice2; interactor of little elongation complex ELL subunit 2	K26144 ICE2; little elongation complex subunit 2 
E        57432 Zc3h8; zinc finger CCCH type containing 8	K24388 ZC3H8; zinc finger CCCH domain-containing protein 8 
D      Brd4/P-TEFb complex
E        57261 Brd4; bromodomain containing 4	K11722 BRD4; bromodomain-containing protein 4 
E        12455 Ccnt1; cyclin T1	K15188 CCNT; cyclin T 
E        72949 Ccnt2; cyclin T2	K15188 CCNT; cyclin T 
E        107951 Cdk9; cyclin dependent kinase 9	K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23] 
D      BUR kinase complex
D      CTDK-I complex
D      7SK RNP complex
E        192231 Hexim1; hexamethylene bis-acetamide inducible 1	K15189 HEXIM1_2; protein HEXIM1/2 
E        71059 Hexim2; hexamethylene bis-acetamide inducible 2	K15189 HEXIM1_2; protein HEXIM1/2 
E        231803 Mepce; methylphosphate capping enzyme	K15190 MEPCE; 7SK snRNA methylphosphate capping enzyme [EC:2.1.1.-] 
E        28036 Larp7; La ribonucleoprotein 7, transcriptional regulator	K15191 LARP7; La-related protein 7 
E        12455 Ccnt1; cyclin T1	K15188 CCNT; cyclin T 
E        72949 Ccnt2; cyclin T2	K15188 CCNT; cyclin T 
E        107951 Cdk9; cyclin dependent kinase 9	K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23] 
D      DBIRD complex
E        219158 Ccar2; cell cycle activator and apoptosis regulator 2	K25816 CCAR2; cell cycle and apoptosis regulator protein 2 
E        54367 Zfp326; zinc finger protein 326	K13204 ZNF326; zinc finger protein 326 
D      Others
E        14886 Gtf2i; general transcription factor II I	K03121 TFII-I; transcription initiation factor TFII-I 
E        57080 Gtf2ird1; general transcription factor II I repeat domain-containing 1	K27274 GTF2IRD1; general transcription factor II-I repeat domain-containing protein 1 
E        107182 Btaf1; B-TFIID TATA-box binding protein associated factor 1	K15192 BTAF1; TATA-binding protein-associated factor [EC:5.6.2.-] 
E        13486 Dr1; down-regulator of transcription 1	K21751 DR1; down-regulator of transcription 1 
E        66556 Drap1; DR1 associated protein 1	K21752 DRAP1; Dr1-associated corepressor 
E        101685 Spty2d1; SPT2 chromatin protein domain containing 1	K15193 SPTY2D1; protein SPT2 
E        14266 Aff2; AF4/FMR2 family, member 2	K15194 AFF2; AF4/FMR2 family member 2 
E        16764 Aff3; AF4/FMR2 family, member 3	K15195 AFF3; AF4/FMR2 family member 3 
E        67655 Ctdp1; CTD phosphatase subunit 1	K15732 CTDP1; RNA polymerase II subunit A C-terminal domain phosphatase [EC:3.1.3.16] 
E        227292 Ctdsp1; CTD small phosphatase 1	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        52468 Ctdsp2; CTD small phosphatase 2	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        69274 Ctdspl; CTD small phosphatase like	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        73473 Iws1; IWS1, SUPT6 interacting protein	K17498 SPN1; transcription factor SPN1 
E        215418 Csrnp1; cysteine-serine-rich nuclear protein 1	K17494 CSRNP; cysteine/serine-rich nuclear protein 
E        207785 Csrnp2; cysteine-serine-rich nuclear protein 2	K17494 CSRNP; cysteine/serine-rich nuclear protein 
E        77771 Csrnp3; cysteine-serine-rich nuclear protein 3	K17494 CSRNP; cysteine/serine-rich nuclear protein 
E        68925 Rpap1; RNA polymerase II associated protein 1	K20826 RPAP1; RNA polymerase II-associated protein 1 
E        231571 Rpap2; RNA polymerase II associated protein 2	K20827 RPAP2; RNA polymerase II-associated protein 2 [EC:3.1.3.16] 
E        71919 Rpap3; RNA polymerase II associated protein 3	K23002 RPAP3; RNA polymerase II-associated protein 3 
E        12454 Ccnk; cyclin K	K23326 CCNK; cyclin K 
E        100210 Gpn2; GPN-loop GTPase 2	K24104 GPN; GPN-loop GTPase 
E        68080 Gpn3; GPN-loop GTPase 3	K24104 GPN; GPN-loop GTPase 
E        74254 Gpn1; GPN-loop GTPase 1	K24104 GPN; GPN-loop GTPase 
E        237052 Tceal1; transcription elongation factor A (SII)-like 1	K26769 TCEAL1; transcription elongation factor A protein-like 1 
B  RNA polymerase III system
C    RNA polymerase III
D      Core subunits
E        218832 Polr3a; polymerase (RNA) III (DNA directed) polypeptide A	K03018 RPC1; DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6] 
E        70428 Polr3b; polymerase (RNA) III (DNA directed) polypeptide B	K03021 RPC2; DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] 
E        20016 Polr1c; polymerase (RNA) I polypeptide C	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        20018 Polr1d; polymerase (RNA) I polypeptide D	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol III specific subunits
E        74414 Polr3c; polymerase (RNA) III (DNA directed) polypeptide C	K03023 RPC3; DNA-directed RNA polymerase III subunit RPC3 
E        67065 Polr3d; polymerase (RNA) III (DNA directed) polypeptide D	K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4 
E        26939 Polr3e; polymerase (RNA) III (DNA directed) polypeptide E	K14721 RPC5; DNA-directed RNA polymerase III subunit RPC5 
E        70408 Polr3f; polymerase (RNA) III (DNA directed) polypeptide F	K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6 
E        67486 Polr3g; polymerase (RNA) III (DNA directed) polypeptide G	K03024 RPC7; DNA-directed RNA polymerase III subunit RPC7 
E        69870 Polr3gl; polymerase (RNA) III (DNA directed) polypeptide G like	K03024 RPC7; DNA-directed RNA polymerase III subunit RPC7 
E        78929 Polr3h; polymerase (RNA) III (DNA directed) polypeptide H	K03022 RPC8; DNA-directed RNA polymerase III subunit RPC8 
E        12909 Crcp; calcitonin gene-related peptide-receptor component protein	K25304 RPC9; DNA-directed RNA polymerase III subunit RPC9 
E        67005 Polr3k; polymerase (RNA) III (DNA directed) polypeptide K	K03019 RPC11; DNA-directed RNA polymerase III subunit RPC11 
D      Pol I, II, III common subunits
E        66420 Polr2e; polymerase (RNA) II (DNA directed) polypeptide E	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        69833 Polr2f; polymerase (RNA) II (DNA directed) polypeptide F	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        245841 Polr2h; polymerase (RNA) II (DNA directed) polypeptide H	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        17749 Polr2k; polymerase (RNA) II (DNA directed) polypeptide K	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        66491 Polr2l; polymerase (RNA) II (DNA directed) polypeptide L	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
C    Basal transcription factors
D      TFIIIA
E        66596 Gtf3a; general transcription factor III A	K09191 GTF3A; general transcription factor IIIA 
D      TFIIIB
E        21374 Tbp; TATA box binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        237336 Tbpl1; TATA box binding protein-like 1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        227606 Tbpl2; TATA box binding protein like 2	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        72308 Brf1; BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit	K15196 BRF1; transcription factor IIIB 90 kDa subunit 
E        66653 Brf2; BRF2, RNA polymerase III transcription initiation factor 50kDa subunit	K15197 BRF2; transcription factor IIIB 50 kDa subunit 
E        544971 Bdp1; B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB	K15198 BDP1; transcription factor TFIIIB component B'' 
D      TFIIIC
E        233863 Gtf3c1; general transcription factor III C 1	K15199 GTF3C1; general transcription factor 3C polypeptide 1 
E        71752 Gtf3c2; general transcription factor IIIC, polypeptide 2, beta	K15200 GTF3C2; general transcription factor 3C polypeptide 2 
E        98488 Gtf3c3; general transcription factor IIIC, polypeptide 3	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
E        269252 Gtf3c4; general transcription factor IIIC, polypeptide 4	K11310 GTF3C4; general transcription factor 3C polypeptide 4 [EC:2.3.1.48] 
E        70239 Gtf3c5; general transcription factor IIIC, polypeptide 5	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        67371 Gtf3c6; general transcription factor IIIC, polypeptide 6, alpha	K15203 GTF3C6; general transcription factor 3C polypeptide 6 
D      TFIIIC, fungi type
E        70239 Gtf3c5; general transcription factor IIIC, polypeptide 5	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        98488 Gtf3c3; general transcription factor IIIC, polypeptide 3	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
C    Other transcription-related factors
D      snRNA-activating protein complex (SNAPc)
E        75627 Snapc1; small nuclear RNA activating complex, polypeptide 1	K15208 SNAPC1; snRNA-activating protein complex subunit 1 
E        102209 Snapc2; small nuclear RNA activating complex, polypeptide 2	K15209 SNAPC2; snRNA-activating protein complex subunit 2 
E        77634 Snapc3; small nuclear RNA activating complex, polypeptide 3	K15210 SNAPC3; snRNA-activating protein complex subunit 3 
E        227644 Snapc4; small nuclear RNA activating complex, polypeptide 4	K09453 SNAPC4; snRNA-activating protein complex subunit 4 
E        330959 Snapc5; small nuclear RNA activating complex, polypeptide 5	K15211 SNAPC5; snRNA-activating protein complex subunit 5 
D      Octamer transcription factors
E        18986 Pou2f1; POU domain, class 2, transcription factor 1	K09364 POU2F; POU domain transcription factor, class 2 
E        18987 Pou2f2; POU domain, class 2, transcription factor 2	K09364 POU2F; POU domain transcription factor, class 2 
E        18988 Pou2f3; POU domain, class 2, transcription factor 3	K09364 POU2F; POU domain transcription factor, class 2 
E        18999 Pou5f1; POU domain, class 5, transcription factor 1	K09367 POU5F; POU domain transcription factor, class 5 
D      Others
E        20841 Zfp143; zinc finger protein 143	K20828 ZNF143_76; zinc finger protein 143/76 
E        224656 Zfp523; zinc finger protein 523	K20828 ZNF143_76; zinc finger protein 143/76 
E        68877 Maf1; MAF1 homolog, negative regulator of RNA polymerase III	K25817 MAF1; repressor of RNA polymerase III transcription MAF1 
B  RNA polymerase I system
C    RNA polymerase I
D      Core subunits
E        20019 Polr1a; polymerase (RNA) I polypeptide A	K02999 RPA1; DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6] 
E        20017 Polr1b; polymerase (RNA) I polypeptide B	K03002 RPA2; DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] 
E        20016 Polr1c; polymerase (RNA) I polypeptide C	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        20018 Polr1d; polymerase (RNA) I polypeptide D	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol I specific subunits
E        64424 Polr1e; polymerase (RNA) I polypeptide E	K03005 RPA49; DNA-directed RNA polymerase I subunit RPA49 
E        28071 Polr1f; RNA polymerase I subunit F	K03004 RPA43; DNA-directed RNA polymerase I subunit RPA43 
E        70333 Polr1g; RNA polymerase I subunit G	K25436 POLR1G; DNA-directed RNA polymerase I subunit RPA34 
E        66136 Polr1h; RNA polymerase I subunit H	K03000 RPA12; DNA-directed RNA polymerase I subunit RPA12 
D      Pol I, II, III common subunits
E        66420 Polr2e; polymerase (RNA) II (DNA directed) polypeptide E	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        69833 Polr2f; polymerase (RNA) II (DNA directed) polypeptide F	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        245841 Polr2h; polymerase (RNA) II (DNA directed) polypeptide H	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        17749 Polr2k; polymerase (RNA) II (DNA directed) polypeptide K	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
E        66491 Polr2l; polymerase (RNA) II (DNA directed) polypeptide L	K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5 
C    Basal transcription factors
D      SL1/TIF-1B
E        21374 Tbp; TATA box binding protein	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        237336 Tbpl1; TATA box binding protein-like 1	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        227606 Tbpl2; TATA box binding protein like 2	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        21339 Taf1a; TATA-box binding protein associated factor, RNA polymerase I, A	K15212 TAF1A; TATA box-binding protein-associated factor RNA polymerase I subunit A 
E        21340 Taf1b; TATA-box binding protein associated factor, RNA polymerase I, B	K15213 TAF1B; TATA box-binding protein-associated factor RNA polymerase I subunit B 
E        21341 Taf1c; TATA-box binding protein associated factor, RNA polymerase I, C	K15214 TAF1C; TATA box-binding protein-associated factor RNA polymerase I subunit C 
E        75316 Taf1d; TATA-box binding protein associated factor, RNA polymerase I, D	K15215 TAF1D; TATA box-binding protein-associated factor RNA polymerase I subunit D 
C    Other transcription-related factors
D      UBF
E        21429 Ubtf; upstream binding transcription factor, RNA polymerase I	K09273 UBTF; upstream-binding transcription factor 
D      Transcription initiation factors
E        106298 Rrn3; RRN3 RNA polymerase I transcription factor homolog (yeast)	K15216 RRN3; RNA polymerase I-specific transcription initiation factor RRN3 
D      Transcription elongation factors
E        20922 Supt4a; SPT4A, DSIF elongation factor subunit	K15171 SUPT4H1; transcription elongation factor SPT4 
E        100041294 Supt4b; SPT4B, DSIF elongation factor subunit	K15171 SUPT4H1; transcription elongation factor SPT4 
E        20924 Supt5; suppressor of Ty 5, DSIF elongation factor subunit	K15172 SUPT5H; transcription elongation factor SPT5 
D      NoRC (nucleolar remodeling complex)
E        93762 Smarca5; SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] 
E        116848 Baz2a; bromodomain adjacent to zinc finger domain, 2A	K15224 BAZ2A; bromodomain adjacent to zinc finger domain protein 2A 
D      CTDK-I complex
D      Transcription termination factors
E        22130 Ttf1; transcription termination factor, RNA polymerase I	K15225 TTF1; transcription termination factor 1 
E        19285 Cavin1; caveolae associated 1	K19387 PTRF; polymerase I and transcript release factor 
D      Others
E        70769 Nolc1; nucleolar and coiled-body phosphoprotein 1	K25818 NOLC1; nucleolar and coiled-body phosphoprotein 1 
#
A<b>Prokaryotic type</b>
B  Bacterial type
C    RNA polymerase
D      Core subunits
D      Sigma factors
C    Other transcription-related factors
D      RNA polymerase-associated proteins
D      Transcription elongation factors
D      Transcription termination factor
B  Archaeal type
C    RNA polymerase
D      Core subunits
C    Basal transcription factors
D      TFB
E        229906 Gtf2b; general transcription factor IIB	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFE
E        74197 Gtf2e1; general transcription factor II E, polypeptide 1 (alpha subunit)	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        99169 expressed sequence AU015228	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
D      TFS
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#<hr>
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#Last updated: April 9, 2024