+E Transcription factors KO
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Transcription Factors - Novosphingobium aromaticivorans
%
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D Saro_2611 transcriptional regulator, AraC family K04033 eutR; AraC family transcriptional regulator, ethanolamine operon transcriptional activator
D Saro_1649 transcriptional regulator, AraC family K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D Saro_2435 transcriptional regulator, AraC family K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D Saro_0758 transcriptional regulator, AraC family K07506 K07506; AraC family transcriptional regulator
D Saro_3661 transcriptional regulator, AraC family K07506 K07506; AraC family transcriptional regulator
D Saro_2396 DNA-O6-methylguanine--protein-cysteine S-methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
C LysR family
D Saro_0978 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D Saro_2659 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D Saro_1501 transcriptional regulator, LysR family K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D Saro_1336 transcriptional regulator, LysR family K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D Saro_1227 transcriptional regulator, LysR family K14657 nodD; LysR family transcriptional regulator, nod-box dependent transcriptional activator
D Saro_3434 transcriptional regulator, LysR family K14657 nodD; LysR family transcriptional regulator, nod-box dependent transcriptional activator
D Saro_2816 transcriptional regulator, LysR family K16516 galR; LysR family transcriptional regulator, regulator for genes of the gallate degradation pathway
D Saro_0537 transcriptional regulator, LysR family K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes
D Saro_3827 transcriptional regulator, LysR family K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes
C DeoR family
C LacI family
D Saro_0755 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Saro_3513 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Saro_1728 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Saro_1609 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Saro_2445 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Saro_3831 transcriptional regulator, LacI family K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
C GntR family
D Saro_2416 transcriptional regulator, GntR family K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D Saro_3676 transcriptional regulator, GntR family K19775 exuR; GntR family transcriptional regulator, hexuronate regulon transcriptional repressor
C TetR/AcrR family
D Saro_1671 transcriptional regulator, TetR family K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D Saro_3085 transcriptional regulator, TetR family K09017 rutR; TetR/AcrR family transcriptional regulator
D Saro_3644 transcriptional regulator, TetR family K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor
D Saro_3509 transcriptional regulator, TetR family K22107 kstR; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
D Saro_1471 transcriptional regulator, TetR family K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
D Saro_0516 transcriptional regulator, TetR family K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
D Saro_0558 transcriptional regulator, TetR family K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
C Lrp/AsnC family
D Saro_3613 transcriptional regulator, AsnC family K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D Saro_3705 transcriptional regulator, AsnC family K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D Saro_3734 transcriptional regulator, AsnC family K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D Saro_0705 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Saro_0598 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Saro_1683 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Saro_3614 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Saro_3706 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
C LuxR family
D Saro_3549 regulatory protein, LuxR K19731 cciR; LuxR family transcriptional regulator, quorum-sensing system regulator CciR
C MarR family
D Saro_3908 transcriptional regulator, TrmB K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
C MerR family
D Saro_2122 transcriptional regulator, MerR family K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein
D Saro_2144 transcriptional regulator, MerR family K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D Saro_0954 transcriptional regulator, MerR family K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
C Fur family
D Saro_0984 ferric uptake regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D Saro_0159 transcriptional regulator K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
C IclR family
D Saro_1226 transcriptional regulator, IclR family K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D Saro_2407 transcriptional regulator, IclR family K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D Saro_1863 transcriptional regulator, IclR family K05818 mhpR; IclR family transcriptional regulator, mhp operon transcriptional activator
C CRP/FNR family
D Saro_2016 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Saro_2581 transcriptional regulator, Crp/Fnr family K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D Saro_0490 putative transcriptional regulator, Crp/Fnr family K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
C Rrf2 family
D Saro_0149 transcriptional regulator, BadM/Rrf2 family K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
C ArsR family
D Saro_3468 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
C XRE family
D Saro_0807 transcriptional regulator, XRE family K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator
D Saro_1028 transcriptional regulator, XRE family K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator
C PadR family
C Other families
D Saro_2286 Biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D Saro_2514 putative transcriptional regulator, ModE family K02019 modE; molybdate transport system regulatory protein
D Saro_0028 transcriptional regulator, XRE family K07727 K07727; putative transcriptional regulator
D Saro_0207 transcriptional regulator, XRE family K07729 K07729; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
D Saro_0609 transcriptional regulator, CopG family K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator
C Other families
D Saro_0704 L-proline dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
C Others
D Saro_3586 protein of unknown function DUF156 K23239 frmR; FrmR/RcnR family transcriptional regulator, repressor of frmRAB operon
D Saro_2911 transcriptional regulator, BolA protein family K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D Saro_0527 ParB family protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Saro_0133 chromosome segregation DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Saro_3590 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Saro_0380 ParB family protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Saro_3925 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Saro_2198 ParB family protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Saro_0625 ParB-like nuclease K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Saro_3917 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Saro_0124 transcriptional regulator, CarD family K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D Saro_2060 heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D Saro_1154 DNA-binding protein Fis K03974 pspF; psp operon transcriptional activator
D Saro_1158 phage shock protein C, PspC K03973 pspC; phage shock protein C
D Saro_2495 phage shock protein C, PspC K03973 pspC; phage shock protein C
D Saro_0827 GreA/GreB family elongation factor K06140 rnk; regulator of nucleoside diphosphate kinase
D Saro_2153 phage transcriptional regulator, AlpA K07733 alpA; prophage regulatory protein
D Saro_2838 negative transcriptional regulator K07734 paiB; transcriptional regulator
D Saro_0683 protein of unknown function DUF179 K07735 algH; putative transcriptional regulator
D Saro_3101 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor
D Saro_0382 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor
D Saro_2242 Protein of unknown function DUF193 K07738 nrdR; transcriptional repressor NrdR
D Saro_1124 hypothetical protein K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 8, 2024
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Classification taken and modified from TRANSFAC 7.0