+D GENES KO
#
KEGG Orthology (KO) - Nitrosomonas europaea
%
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A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:neu00010]
D NE1694 Glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D NE2263 pgi; Phosphoglucose isomerase (PGI) K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D NE1934 Phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D NE0521 cbbF; fructose-1,6-bisphosphatase/sedoheptulose-1,7-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D NE0324 cbbA; Fructose-bisphosphate aldolase, class-II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D NE1779 cbbJ; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D NE0327 cbbG; Glyceraldehyde 3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D NE0326 cbbK; Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D NE1780 Phosphoglycerate mutase family K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D NE0178 gpmA; Phosphoglycerate mutase family K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D NE1044 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D NE0325 pykA1; Pyruvate kinase family K00873 PK; pyruvate kinase [EC:2.7.1.40]
D NE2359 ppsA; ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D NE2366 ppsA; ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D NE0361 aceE; aceE; pyruvate dehydrogenase e1 component oxidoreductase protein K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D NE0360 aceF; aceF; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (e2) protein K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D NE2157 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D NE2319 lpdA3; pdA3; dihydrolipoamide dehydrogenase E3 component K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D NE0774 pyridine nucleotide-disulfide oxidoreductase, class I K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D NE0907 adhC1; Alcohol dehydrogenase class III and related dehydrogenases K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D NE0820 Zinc-containing alcohol dehydrogenase superfamily K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D NE2341 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D NE1895 Phosphoglucomutase and phosphomannomutase family K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D NE1003 Aldose 1-epimerase K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15]
C 00020 Citrate cycle (TCA cycle) [PATH:neu00020]
D NE2373 gltA; Citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D NE1002 acnA1; acnA1; aconitate hydratase protein K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D NE1730 icd; icd; isocitrate dehydrogenase [NADP] oxidoreductase protein K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D NE2374 odhA; Transketolase:Dehydrogenase, E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D NE2375 sucB; sucB; dihydrolipoamide succinyltransferase (component of 2-oxoglutarate dehydrogenase complex) protein K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D NE2157 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D NE2319 lpdA3; pdA3; dihydrolipoamide dehydrogenase E3 component K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D NE0774 pyridine nucleotide-disulfide oxidoreductase, class I K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D NE0051 sucD; ATP-citrate lyase/succinyl-CoA ligases:DUF184 K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D NE0050 sucC; ATP-citrate lyase/succinyl-CoA ligases:ATP-grasp domain K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D NE1048 sdhA; Succinate dehydrogenase/fumarate reductase, flavoprotein subunits K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D NE2371 sdhB; sdhB; succinate dehydrogenase (iron-sulfur subunit) oxidoreductase protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D NE1046 Succinate dehydrogenase, cytochrome b subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D NE1047 sdhD; Succinate dehydrogenase, cytochrome b subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D NE2286 fumC; Fumarate lyase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D NE0773 Lactate/malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D NE0361 aceE; aceE; pyruvate dehydrogenase e1 component oxidoreductase protein K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D NE0360 aceF; aceF; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (e2) protein K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
C 00030 Pentose phosphate pathway [PATH:neu00030]
D NE2263 pgi; Phosphoglucose isomerase (PGI) K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D NE0398 zwf; Glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D NE1691 Glucosamine/galactosamine-6-phosphate isomerase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31]
D NE0397 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D NE2148 cbbE; Ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D NE0328 cbbT; Transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D NE2136 tal; Transaldolase:Transaldolase subfamily K00616 TALDO1; transaldolase [EC:2.2.1.2]
D NE1743 cbbI; Ribose 5-phosphate isomerase K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D NE2135 conserved hypothetical protein K01621 xfp; xylulose-5-phosphate/fructose-6-phosphate phosphoketolase [EC:4.1.2.9 4.1.2.22]
D NE1895 Phosphoglucomutase and phosphomannomutase family K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D NE1826 Phosphoribosyl transferase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D NE2456 ttuD2; putative hydroxypyruvate reductase oxidoreductase protein K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D NE0324 cbbA; Fructose-bisphosphate aldolase, class-II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D NE0521 cbbF; fructose-1,6-bisphosphatase/sedoheptulose-1,7-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D NE1934 Phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
C 00040 Pentose and glucuronate interconversions [PATH:neu00040]
D NE1343 udg; UDP-glucose/GDP-mannose dehydrogenase family K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D NE1382 galU1; ADP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D NE2148 cbbE; Ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D NE0048 Class II Aldolase and Adducin N-terminal domain K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]
C 00051 Fructose and mannose metabolism [PATH:neu00051]
D NE1212 PfkB family of carbohydrate kinases K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D NE2250 putative mannose-1-phosphate guanylyltransferase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D NE1895 Phosphoglucomutase and phosphomannomutase family K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D NE0048 Class II Aldolase and Adducin N-terminal domain K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]
D NE1934 Phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D NE0521 cbbF; fructose-1,6-bisphosphatase/sedoheptulose-1,7-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D NE0324 cbbA; Fructose-bisphosphate aldolase, class-II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D NE1779 cbbJ; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D NE2183 conserved hypothetical protein K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
C 00052 Galactose metabolism [PATH:neu00052]
D NE1689 possible epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D NE0679 NAD dependent epimerase/dehydratase family K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D NE1382 galU1; ADP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D NE1895 Phosphoglucomutase and phosphomannomutase family K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D NE1694 Glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D NE1934 Phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
C 00053 Ascorbate and aldarate metabolism [PATH:neu00053]
D NE1343 udg; UDP-glucose/GDP-mannose dehydrogenase family K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D NE2277 NAD dependent epimerase/dehydratase family K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D NE1687 hpaI2; putative 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase protein K01630 garL; 2-dehydro-3-deoxyglucarate aldolase [EC:4.1.2.20]
C 00500 Starch and sucrose metabolism [PATH:neu00500]
D NE1213 sps; Glycosyl transferases group 1 K00696 E2.4.1.14; sucrose-phosphate synthase [EC:2.4.1.14]
D NE1214 ss2; Sucrose synthase:Glycosyl transferases group 1 K00695 SUS; sucrose synthase [EC:2.4.1.13]
D NE1382 galU1; ADP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D NE2030 ADP-glucose pyrophosphorylase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D NE2264 glgA1; Glycosyl transferases group 1 K00703 glgA; starch synthase [EC:2.4.1.21]
D NE2029 glgB; Glycoside hydrolase family 13:Isoamylase N-terminus K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D NE0074 putative alpha-glucan phosphorylase, putative K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D NE0466 Glycosyltransferase family 35 K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D NE2032 amyA; Glycosyl hydrolase family 57 K22451 jgt; 4-alpha-glucanotransferase [EC:2.4.1.25]
D NE1895 Phosphoglucomutase and phosphomannomutase family K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D NE1694 Glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D NE2263 pgi; Phosphoglucose isomerase (PGI) K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D NE1212 PfkB family of carbohydrate kinases K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:neu00520]
D NE2320 Glycoside hydrolase family 3, N terminal K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D NE1212 PfkB family of carbohydrate kinases K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D NE0209 glmS; Glutamine amidotransferase class-II:SIS domain K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D NE0530 mrsA; Phosphoglucomutase and phosphomannomutase family K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D NE0208 glmU; glmU; UDP-N-acetylglucosamine pyrophosphorylase protein K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D NE1429 conserved hypothetical protein K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170]
D NE2546 Haloacid dehalogenase/epoxide hydrolase family K22292 mupP; N-acetyl-D-muramate 6-phosphate phosphatase [EC:3.1.3.105]
D NE0191 Domain of unknown function DUF227 K07102 amgK; N-acetylmuramate 1-kinase [EC:2.7.1.221]
D NE0190 ADP-glucose pyrophosphorylase K00992 murU; N-acetyl-alpha-D-muramate 1-phosphate uridylyltransferase [EC:2.7.7.99]
D NE1852 murA; EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D NE0993 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D NE0486 rffE; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D NE2249 wbpI; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D NE2276 tviB; UDP-glucose/GDP-mannose dehydrogenase family K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-]
D NE1569 neuA1; Cytidylyltransferase (CMP-NeuAc synthetase) K18431 legF; CMP-N,N'-diacetyllegionaminic acid synthase [EC:2.7.7.82]
D NE1694 Glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D NE1895 Phosphoglucomutase and phosphomannomutase family K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D NE1382 galU1; ADP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D NE1343 udg; UDP-glucose/GDP-mannose dehydrogenase family K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D NE1689 possible epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D NE0679 NAD dependent epimerase/dehydratase family K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D NE2277 NAD dependent epimerase/dehydratase family K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D NE2183 conserved hypothetical protein K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D NE2263 pgi; Phosphoglucose isomerase (PGI) K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D NE2250 putative mannose-1-phosphate guanylyltransferase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D NE0594 putative reductase oxidoreductase protein K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1]
D NE2030 ADP-glucose pyrophosphorylase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
C 00620 Pyruvate metabolism [PATH:neu00620]
D NE2341 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D NE0361 aceE; aceE; pyruvate dehydrogenase e1 component oxidoreductase protein K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D NE0360 aceF; aceF; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (e2) protein K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D NE2157 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D NE2319 lpdA3; pdA3; dihydrolipoamide dehydrogenase E3 component K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D NE0774 pyridine nucleotide-disulfide oxidoreductase, class I K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D NE0907 adhC1; Alcohol dehydrogenase class III and related dehydrogenases K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D NE0820 Zinc-containing alcohol dehydrogenase superfamily K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D NE2134 ackA2; Acetate and butyrate kinase:Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D NE0298 pta; Phosphate acetyl/butaryl transferase:Phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D NE0325 pykA1; Pyruvate kinase family K00873 PK; pyruvate kinase [EC:2.7.1.40]
D NE1021 accA; Carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D NE0652 accB1; possible accB1; biotin carboxyl carrier protein of acetyl-CoA carboxylase (bccp) K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D NE0653 accC1; accC1; biotin carboxylase protein K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D NE0695 accD; Acetyl-CoA carboxylase carboxyl transferase beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D NE0899 ldhA; D-isomer specific 2-hydroxyacid dehydrogenase K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28]
D NE1427 gloA; possible gloA; lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D NE0138 Metallo-beta-lactamase superfamily K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D NE0438 putative malate oxidoreductase (malic enzyme) K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D NE0773 Lactate/malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D NE2286 fumC; Fumarate lyase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D NE0589 ppc; Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D NE2359 ppsA; ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D NE2366 ppsA; ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D NE2262 bktB; Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D NE1320 leuA1; HMG-CoA Lyase-like family K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:neu00630]
D NE2341 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D NE0773 Lactate/malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D NE2373 gltA; Citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D NE1002 acnA1; acnA1; aconitate hydratase protein K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D NE1811 ATP-citrate lyase/succinyl-CoA ligases:DUF184 K08692 mtkB; malate-CoA ligase subunit alpha [EC:6.2.1.9]
D NE1810 ATP-citrate lyase/succinyl-CoA ligases:ATP-grasp domain K14067 mtkA; malate-CoA ligase subunit beta [EC:6.2.1.9]
D NE2262 bktB; Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D NE1809 probable beta subunit of citrate lyase K08691 mcl; malyl-CoA/(S)-citramalyl-CoA lyase [EC:4.1.3.24 4.1.3.25]
D NE0675 glcD; glcD; glycolate oxidase subunit GlcD K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14]
D NE0674 glcE; FAD linked oxidase, N-terminal K11472 glcE; glycolate dehydrogenase FAD-binding subunit [EC:1.1.99.14]
D NE0673 glcf; glcF; glycolate oxidase (iron-sulfur subunit) protein K11473 glcF; glycolate dehydrogenase iron-sulfur subunit [EC:1.1.99.14]
D NE1670 glycolate oxidase iron-sulfur subunit K11473 glcF; glycolate dehydrogenase iron-sulfur subunit [EC:1.1.99.14]
D NE1886 katA; Catalase K03781 katE; catalase [EC:1.11.1.6]
D NE0101 hprA; D-isomer specific 2-hydroxyacid dehydrogenase K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29]
D NE2149 cbbZ; phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D NE1921 cbbL; Ribulose bisphosphate carboxylase, large chain K01601 rbcL; ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39]
D NE1920 cbbS; Ribulose bisphosphate carboxylase, small chain K01602 rbcS; ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39]
D NE0034 Aminotransferase class-V K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D NE0504 glnA1; Glutamine synthetase type I, glnA K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D NE1433 glyA; Serine hydroxymethyltransferase (SHMT) K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D NE0609 Glycine cleavage system P-protein K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2]
D NE0610 Glycine cleavage system P-protein K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2]
D NE0607 gcvT; Glycine cleavage T-protein (aminomethyl transferase) K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D NE2157 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D NE2319 lpdA3; pdA3; dihydrolipoamide dehydrogenase E3 component K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D NE0774 pyridine nucleotide-disulfide oxidoreductase, class I K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D NE0608 gcvH1; Glycine cleavage H-protein K02437 gcvH; glycine cleavage system H protein
D NE2456 ttuD2; putative hydroxypyruvate reductase oxidoreductase protein K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
C 00640 Propanoate metabolism [PATH:neu00640]
D NE2341 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D NE2134 ackA2; Acetate and butyrate kinase:Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D NE0298 pta; Phosphate acetyl/butaryl transferase:Phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D NE2157 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D NE2319 lpdA3; pdA3; dihydrolipoamide dehydrogenase E3 component K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D NE0774 pyridine nucleotide-disulfide oxidoreductase, class I K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D NE1021 accA; Carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D NE0652 accB1; possible accB1; biotin carboxyl carrier protein of acetyl-CoA carboxylase (bccp) K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D NE0653 accC1; accC1; biotin carboxylase protein K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D NE0695 accD; Acetyl-CoA carboxylase carboxyl transferase beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D NE0050 sucC; ATP-citrate lyase/succinyl-CoA ligases:ATP-grasp domain K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D NE0051 sucD; ATP-citrate lyase/succinyl-CoA ligases:DUF184 K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
C 00650 Butanoate metabolism [PATH:neu00650]
D NE2262 bktB; Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D NE1528 putative 3-hydroxyacyl-CoA dehydrogenase oxidoreductase protein K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D NE1048 sdhA; Succinate dehydrogenase/fumarate reductase, flavoprotein subunits K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D NE2371 sdhB; sdhB; succinate dehydrogenase (iron-sulfur subunit) oxidoreductase protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D NE1046 Succinate dehydrogenase, cytochrome b subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D NE1047 sdhD; Succinate dehydrogenase, cytochrome b subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D NE2000 gabD; Aldehyde dehydrogenase family K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D NE1325 ilvI; Thiamine pyrophosphate dependent enzyme K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D NE1324 ilvH; probable acetolactate synthase isozyme III (small subunit) K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:neu00660]
D NE1325 ilvI; Thiamine pyrophosphate dependent enzyme K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D NE1324 ilvH; probable acetolactate synthase isozyme III (small subunit) K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D NE0050 sucC; ATP-citrate lyase/succinyl-CoA ligases:ATP-grasp domain K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D NE0051 sucD; ATP-citrate lyase/succinyl-CoA ligases:DUF184 K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D NE1809 probable beta subunit of citrate lyase K08691 mcl; malyl-CoA/(S)-citramalyl-CoA lyase [EC:4.1.3.24 4.1.3.25]
D NE0685 leuC; leuC; 3-isopropylmalate dehydratase (large subunit) K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D NE0687 leuD; leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D NE0688 leuB; leuB, 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:neu00562]
D NE1954 suhB; suhB; inositol monophosphatase (extragenic suppressor protein) K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D NE0781 myo-inositol-1(or 4)-monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D NE1779 cbbJ; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:neu00190]
D NE1777 nuoA; NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D NE1776 nuoB; Respiratory-chain NADH dehydrogenase 20 Kd subunit K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D NE1775 nuoC; Respiratory-chain NADH dehydrogenase 30 Kd subunit K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2]
D NE1774 nuoD; NADH-ubiquinone oxidoreductase 49Kd chain K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2]
D NE1773 nuoE; Respiratory-chain NADH dehydrogenase 24 Kd subunit K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D NE1772 nuoF; Respiratory-chain NADH dehydrogenase 51 Kd subunit K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D NE1771 nuoG; Ferredoxin:Prokaryotic molybdopterin oxidoreductases K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D NE1770 nuoH; Respiratory-chain NADH dehydrogenase subunit 1 K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D NE1769 nuoI; nuoI; NADH dehydrogenase I (chain I) oxidoreductase protein K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D NE1768 nuoJ; NADH-ubiquinone/plastoquinone oxidoreductase chain 6 K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D NE1767 nuoK; possible nuoK; transmembrane NADH dehydrogenase I (chain K) oxidoreductase protein K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D NE1766 nuoL; probable nuoL; transmembrane NADH dehydrogenase I (chain L) oxidoreductase protein K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D NE1765 nuoM; possible nuoM; transmembrane NADH dehydrogenase I (chain M) oxidoreductase protein K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D NE1764 nuoN; possible nuoN; transmembrane NADH dehydrogenase I (chain N) oxidoreductase protein K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D NE2216 FAD-dependent pyridine nucleotide-disulphide oxidoreductase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D NE1048 sdhA; Succinate dehydrogenase/fumarate reductase, flavoprotein subunits K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D NE2371 sdhB; sdhB; succinate dehydrogenase (iron-sulfur subunit) oxidoreductase protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D NE1046 Succinate dehydrogenase, cytochrome b subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D NE1047 sdhD; Succinate dehydrogenase, cytochrome b subunit K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D NE0809 Rieske iron-sulfur protein 2Fe-2S subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D NE0810 Cytochrome b/b6 K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D NE0811 petC; Cytochrome c1 K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D NE1010 ctaB; UbiA prenyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D NE1013 coxC; Cytochrome c oxidase, subunit III K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9]
D NE0683 coxA2; Cytochrome c oxidase, subunit I K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9]
D NE1016 coxA; Cytochrome c oxidase, subunit I K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9]
D NE0684 coxB; possible cytochrome-c oxidase (EC 1.9.3.1) chain II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9]
D NE1017 coxB; coxB; cytochrome C oxidase polypeptide II precursor (cytochrome AA3 subunit 2) transmembrane protein K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9]
D NE1015 ctaG; putative cytochrome C oxidase assembly transmembrane protein K02258 COX11; cytochrome c oxidase assembly protein subunit 11
D NE0431 Cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9]
D NE0925 Cytochrome c, class IC:Cytochrome c, class I K00406 ccoP; cytochrome c oxidase cbb3-type subunit III
D NE0102 cyt_c552; Cytochrome c-552 precursor K08738 CYC; cytochrome c
D NE0204 atpA; FoF1-type ATP synthase alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D NE0206 atpD; FoF1-type ATP synthase beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D NE0205 atpG; ATP synthase gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D NE0203 atpH; ATP synthase, delta (OSCP) subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D NE0207 atpC; ATP synthase, Delta/Epsilon chain K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D NE0200 atpB; ATP synthase A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D NE0202 atpF; ATP synthase B/B' CF(0) K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D NE0201 atpE; ATP synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D NE0323 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation in photosynthetic organisms [PATH:neu00710]
D NE1921 cbbL; Ribulose bisphosphate carboxylase, large chain K01601 rbcL; ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39]
D NE1920 cbbS; Ribulose bisphosphate carboxylase, small chain K01602 rbcS; ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39]
D NE0326 cbbK; Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D NE0327 cbbG; Glyceraldehyde 3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D NE0324 cbbA; Fructose-bisphosphate aldolase, class-II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D NE0521 cbbF; fructose-1,6-bisphosphatase/sedoheptulose-1,7-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D NE0328 cbbT; Transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D NE1743 cbbI; Ribose 5-phosphate isomerase K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D NE1474 cbbP; Phosphoribulokinase K00855 PRK; phosphoribulokinase [EC:2.7.1.19]
D NE1779 cbbJ; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D NE2148 cbbE; Ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D NE0589 ppc; Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D NE0438 putative malate oxidoreductase (malic enzyme) K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D NE0773 Lactate/malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
C 00720 Carbon fixation pathways in prokaryotes
C 00680 Methane metabolism [PATH:neu00680]
D NE0944 amoA1; Ammonia monooxygenase K10944 pmoA-amoA; methane/ammonia monooxygenase subunit A [EC:1.14.18.3 1.14.99.39]
D NE2063 amoA2; Ammonia monooxygenase, subunit A K10944 pmoA-amoA; methane/ammonia monooxygenase subunit A [EC:1.14.18.3 1.14.99.39]
D NE0943 amoB1; ammonia monooxygenase, 43 kDa subunit K10945 pmoB-amoB; methane/ammonia monooxygenase subunit B
D NE2062 amoB2; AMMONIA MONOOXYGENASE, subunit B K10945 pmoB-amoB; methane/ammonia monooxygenase subunit B
D NE0945 amoC1; ammonia monooxygenase subunit C2 K10946 pmoC-amoC; methane/ammonia monooxygenase subunit C
D NE1411 amoC3; ammonia monooxygenase 3 subunit C K10946 pmoC-amoC; methane/ammonia monooxygenase subunit C
D NE2064 amoC2; ammonia monooxygenase subunit C K10946 pmoC-amoC; methane/ammonia monooxygenase subunit C
D NE0907 adhC1; Alcohol dehydrogenase class III and related dehydrogenases K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D NE0908 probable hydrolase oxidoreductase protein K01070 frmB; S-formylglutathione hydrolase [EC:3.1.2.12]
D NE1433 glyA; Serine hydroxymethyltransferase (SHMT) K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D NE0034 Aminotransferase class-V K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D NE0101 hprA; D-isomer specific 2-hydroxyacid dehydrogenase K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29]
D NE2456 ttuD2; putative hydroxypyruvate reductase oxidoreductase protein K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D NE1044 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D NE0589 ppc; Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D NE0773 Lactate/malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D NE1811 ATP-citrate lyase/succinyl-CoA ligases:DUF184 K08692 mtkB; malate-CoA ligase subunit alpha [EC:6.2.1.9]
D NE1810 ATP-citrate lyase/succinyl-CoA ligases:ATP-grasp domain K14067 mtkA; malate-CoA ligase subunit beta [EC:6.2.1.9]
D NE1809 probable beta subunit of citrate lyase K08691 mcl; malyl-CoA/(S)-citramalyl-CoA lyase [EC:4.1.3.24 4.1.3.25]
D NE0324 cbbA; Fructose-bisphosphate aldolase, class-II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D NE0521 cbbF; fructose-1,6-bisphosphatase/sedoheptulose-1,7-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D NE1934 Phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D NE2134 ackA2; Acetate and butyrate kinase:Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D NE0298 pta; Phosphate acetyl/butaryl transferase:Phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D NE2341 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D NE2359 ppsA; ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D NE2366 ppsA; ppsA; phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D NE1780 Phosphoglycerate mutase family K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D NE0178 gpmA; Phosphoglycerate mutase family K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D NE0334 D-isomer specific 2-hydroxyacid dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D NE1688 serA; D-isomer specific 2-hydroxyacid dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D NE0333 serC; Aminotransferase class-V:Phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D NE0439 serB; possible serB; phosphoserine phosphatase protein K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 00910 Nitrogen metabolism [PATH:neu00910]
D NE0924 aniA; Multicopper oxidase type 1 K00368 nirK; nitrite reductase (NO-forming) [EC:1.7.2.1]
D NE2004 norB; Cytochrome c oxidase, subunit I K04561 norB; nitric oxide reductase subunit B [EC:1.7.2.5]
D NE2003 nitric oxide reductase, cytochrome c-containing subunit K02305 norC; nitric oxide reductase subunit C
D NE0944 amoA1; Ammonia monooxygenase K10944 pmoA-amoA; methane/ammonia monooxygenase subunit A [EC:1.14.18.3 1.14.99.39]
D NE2063 amoA2; Ammonia monooxygenase, subunit A K10944 pmoA-amoA; methane/ammonia monooxygenase subunit A [EC:1.14.18.3 1.14.99.39]
D NE0943 amoB1; ammonia monooxygenase, 43 kDa subunit K10945 pmoB-amoB; methane/ammonia monooxygenase subunit B
D NE2062 amoB2; AMMONIA MONOOXYGENASE, subunit B K10945 pmoB-amoB; methane/ammonia monooxygenase subunit B
D NE0945 amoC1; ammonia monooxygenase subunit C2 K10946 pmoC-amoC; methane/ammonia monooxygenase subunit C
D NE1411 amoC3; ammonia monooxygenase 3 subunit C K10946 pmoC-amoC; methane/ammonia monooxygenase subunit C
D NE2064 amoC2; ammonia monooxygenase subunit C K10946 pmoC-amoC; methane/ammonia monooxygenase subunit C
D NE0962 hao2; hydroxylamine oxidoreductase K10535 hao; hydroxylamine dehydrogenase [EC:1.7.2.6]
D NE2044 hao1; hydroxylamine oxidoreductase K10535 hao; hydroxylamine dehydrogenase [EC:1.7.2.6]
D NE2339 hao3; hydroxylamine oxidoreductase K10535 hao; hydroxylamine dehydrogenase [EC:1.7.2.6]
D NE1616 gdhA; Glutamate/leucine/phenylalanine/valine dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D NE0504 glnA1; Glutamine synthetase type I, glnA K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D NE1926 Prokaryotic-type carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
D NE0606 cah; Eukaryotic-type carbonic anhydrase K01674 cah; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:neu00920]
D NE0582 sbp1; Prokaryotic sulfate-/thiosulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D NE0578 cysU; cysU; sulfate transport ABC transporter protein K02046 cysU; sulfate/thiosulfate transport system permease protein
D NE0577 cysW; cysW; sulfate transport ABC transporter protein K02047 cysW; sulfate/thiosulfate transport system permease protein
D NE0576 cysA; cysA; sulfate transport ATP-binding ABC transporter protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D NE0857 cysN; GTP-binding elongation factor:Elongation factor Tu domain 2 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D NE0856 cysD; Phosphoadenosine phosphosulfate reductase K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D NE0855 cysH; probable cysH; 5' adenylylsulfate aps reductase protein K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]
D NE0853 yvgR; Sulfite reductase flavoprotein subunit K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]
D NE0852 yvgQ; Nitrite and sulfite reductase K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2]
D NE2567 conserved hypothetical protein K17218 sqr; sulfide:quinone oxidoreductase [EC:1.8.5.4]
D NE1695 Bacterial transferase hexapeptide repeat K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D NE0575 Bacterial transferase hexapeptide repeat K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D NE2186 metX; Alpha/beta hydrolase fold K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D NE0700 metZ; Cys/Met metabolism pyridoxal-phosphate-dependent enzymes K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:neu00061]
D NE1021 accA; Carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D NE0652 accB1; possible accB1; biotin carboxyl carrier protein of acetyl-CoA carboxylase (bccp) K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D NE0653 accC1; accC1; biotin carboxylase protein K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D NE0695 accD; Acetyl-CoA carboxylase carboxyl transferase beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D NE1649 Acyl carrier protein (ACP):Phosphopantetheine attachment site K02078 acpP; acyl carrier protein
D NE1656 Phosphopantetheine attachment site K02078 acpP; acyl carrier protein
D NE2163 hypothetical protein K02078 acpP; acyl carrier protein
D NE1647 fabD; fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D NE1646 fabH; fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D NE1650 fabF1; Beta-ketoacyl synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D NE1648 fabG1; Short-chain dehydrogenase/reductase (SDR) superfamily K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D NE1708 fabZ; Bacterial thioester dehydrase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D NE2205 Short-chain dehydrogenase/reductase (SDR) superfamily K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D NE1549 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D NE2235 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:neu00071]
D NE2262 bktB; Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D NE1527 Thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D NE1528 putative 3-hydroxyacyl-CoA dehydrogenase oxidoreductase protein K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D NE2348 fadE1; Acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D NE1548 Acyl-CoA dehydrogenase K06445 fadE; acyl-CoA dehydrogenase [EC:1.3.99.-]
D NE1549 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D NE2235 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D NE1420 probable rubredoxin reductase K05297 rubB; rubredoxin---NAD+ reductase [EC:1.18.1.1]
D NE0907 adhC1; Alcohol dehydrogenase class III and related dehydrogenases K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:neu00561]
D NE2456 ttuD2; putative hydroxypyruvate reductase oxidoreductase protein K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D NE0820 Zinc-containing alcohol dehydrogenase superfamily K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D NE1645 plsX; Fatty acid synthesis plsX protein K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D NE0224 DUF205 K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D NE1184 nlaB; Phospholipid and glycerol acyltransferase (from 'motifs_6.msf') K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D NE0612 plsC; Phospholipid and glycerol acyltransferase (from 'motifs_6.msf') K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D NE0804 DAG-kinase catalytic domain (presumed) K07029 dagK; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D NE0777 TGL2; Esterase/lipase/thioesterase family active site K01046 lip; triacylglycerol lipase [EC:3.1.1.3]
C 00564 Glycerophospholipid metabolism [PATH:neu00564]
D NE2208 gpsA; NAD-dependent glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D NE0370 eryB; NAD binding site:D-amino acid oxidase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D NE0224 DUF205 K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D NE1184 nlaB; Phospholipid and glycerol acyltransferase (from 'motifs_6.msf') K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D NE0612 plsC; Phospholipid and glycerol acyltransferase (from 'motifs_6.msf') K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D NE0804 DAG-kinase catalytic domain (presumed) K07029 dagK; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D NE0371 Glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D NE1713 cdsA; possible cdsA; phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D NE1321 pssA; pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D NE1322 psd; psd, phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D NE2560 pgpA; probable phosphatidyl-glycerophosphatase hydrolase transmembrane protein K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27]
D NE0068 Phospholipase D/Transphosphatidylase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
D NE2127 pgsA; pgsA: CDP-diacylglycerol--glycerol-3-phosphatidyltransferase K08744 CRLS; cardiolipin synthase (CMP-forming) [EC:2.7.8.41]
C 00565 Ether lipid metabolism
C 00600 Sphingolipid metabolism
C 00590 Arachidonic acid metabolism
D NE1239 ALOX5; Lipoxygenase K19246 loxA; arachidonate 15-lipoxygenase [EC:1.13.11.33]
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism [PATH:neu00592]
D NE1527 Thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01040 Biosynthesis of unsaturated fatty acids [PATH:neu01040]
D NE1467 Fatty acid desaturase, type 2:Fatty acid desaturase, type 1 K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D NE1455 GDSL lipolytic enzyme K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:neu00230]
D NE2470 NUDIX hydrolase:Conserved hypothetical protein 52 K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D NE1895 Phosphoglucomutase and phosphomannomutase family K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D NE1826 Phosphoribosyl transferase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D NE0699 purF; Glutamine amidotransferase class-II:Phosphoribosyl transferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D NE0877 purD; Phosphoribosylglycinamide synthetase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D NE0087 purN; purN; phosphoribosylglycinamide formyltransferase protein K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D NE0019 purL; AIR synthase related protein K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
D NE0088 purM; purM; phosphoribosylformylglycinamidine cyclo-ligase (airS) protein K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D NE0867 purK; phosphoribosylaminoimidazole carboxylase, ATPase subunit; ATP-grasp domain K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D NE0868 purE; purE; phosphoribosylaminoimidazole carboxylase catalytic subunit protein K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D NE0866 purC; SAICAR synthetase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D NE1951 Fumarate lyase:Adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D NE0876 purH; probable phosphoribosylaminoimidazolecarboxamide formyltransferase and IMP cyclodydrolase transmembrane protein K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D NE0181 apt; Phosphoribosyl transferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D NE0950 surE; Survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D NE1654 DUF152 K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D NE0095 guaB; guaB; inosine-5'-monophosphate dehydrogenase oxidoreductase protein K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D NE0144 ndk; Nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D NE0277 Ham1 family K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D NE0094 guaA; guaA; GMP synthetase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D NE2254 gmk; Guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D NE2423 nrdA; Ribonucleotide reductase large subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D NE2422 nrdB; Ribonucleotide reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D NE1982 dgt; HD domain:Metal dependent phosphohydrolase HD domain K01129 dgt; dGTPase [EC:3.1.5.1]
D NE0368 spoT; spoT; bifunctional enzyme (p)ppgpp synthetase II and guanosine-3',5'-bisdiphosphate 3'-pyro K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D NE1745 ppx; Ppx/GppA phosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D NE1299 Guanylate cyclase K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D NE1496 conserved hypothetical protein K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D NE1847 Guanylate cyclase K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D NE1281 purA; Adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D NE0611 PfkB family of carbohydrate kinases K00856 ADK; adenosine kinase [EC:2.7.1.20]
D NE1933 adk; Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D NE0613 bis(5'-nucleosyl)-tetraphosphatase K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41]
D NE0857 cysN; GTP-binding elongation factor:Elongation factor Tu domain 2 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D NE0856 cysD; Phosphoadenosine phosphosulfate reductase K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
C 00240 Pyrimidine metabolism [PATH:neu00240]
D NE1661 carB; Carbamoyl-phosphate synthase:Methylglyoxal synthase-like domain K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D NE1662 carA; carA; carbamoyl-phosphate synthase (small chain) protein K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D NE1665 pyrB; pyrB; aspartate carbamoyltransferase (catalytic chain) protein K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D NE1664 pyrX; Dihydroorotase:Dihydroorotase multifunctional complex type K01465 URA4; dihydroorotase [EC:3.5.2.3]
D NE0727 pyrC; Dihydroorotase homodimeric type K01465 URA4; dihydroorotase [EC:3.5.2.3]
D NE2221 pyrD; pyrD; dihydroorotate dehydrogenase oxidoreductase protein K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D NE1734 pyrE; Phosphoribosyl transferase:Orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D NE1959 pyrF; Orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D NE1716 pyrH; Aspartokinase superfamily K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D NE0144 ndk; Nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D NE0356 Maf-like protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D NE1045 pyrG; Glutamine amidotransferase class-I:CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D NE1963 cmk; Cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D NE0950 surE; Survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D NE1666 pyrR; Phosphoribosyl transferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D NE0623 dUTPase:dCTP Deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D NE2423 nrdA; Ribonucleotide reductase large subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D NE2422 nrdB; Ribonucleotide reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D NE2181 tmk; Thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D NE1462 dut; dUTPase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D NE0568 thyB; Thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:neu00250]
D NE0786 aatA; Aminotransferases class-I K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D NE1892 nadB1; nadB1; l-aspartate oxidase (quinolinate synthetase B) oxidoreductase protein K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D NE1795 Glutamine amidotransferase class-II:Asparagine synthase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D NE1127 asnB; Asparagine synthase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D NE2368 Aspartate aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D NE0034 Aminotransferase class-V K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D NE0022 alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D NE1437 argG; Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D NE1854 argH; argH: argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D NE1281 purA; Adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D NE1951 Fumarate lyase:Adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D NE1665 pyrB; pyrB; aspartate carbamoyltransferase (catalytic chain) protein K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D NE2000 gabD; Aldehyde dehydrogenase family K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D NE1616 gdhA; Glutamate/leucine/phenylalanine/valine dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D NE0504 glnA1; Glutamine synthetase type I, glnA K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D NE1661 carB; Carbamoyl-phosphate synthase:Methylglyoxal synthase-like domain K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D NE1662 carA; carA; carbamoyl-phosphate synthase (small chain) protein K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D NE0209 glmS; Glutamine amidotransferase class-II:SIS domain K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D NE0699 purF; Glutamine amidotransferase class-II:Phosphoribosyl transferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:neu00260]
D NE2132 lysC; Aspartokinase superfamily:ACT domain K00928 lysC; aspartate kinase [EC:2.7.2.4]
D NE0689 asd; Semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D NE2369 Homoserine dehydrogenase:ACT domain K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D NE1471 thrB; putative homoserine kinase protein K02204 thrB2; homoserine kinase type II [EC:2.7.1.39]
D NE2370 thrC; thrC; probable threonine synthase protein K01733 thrC; threonine synthase [EC:4.2.3.1]
D NE1433 glyA; Serine hydroxymethyltransferase (SHMT) K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D NE0034 Aminotransferase class-V K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D NE0101 hprA; D-isomer specific 2-hydroxyacid dehydrogenase K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29]
D NE2456 ttuD2; putative hydroxypyruvate reductase oxidoreductase protein K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D NE1780 Phosphoglycerate mutase family K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D NE0178 gpmA; Phosphoglycerate mutase family K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D NE0334 D-isomer specific 2-hydroxyacid dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D NE1688 serA; D-isomer specific 2-hydroxyacid dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D NE0333 serC; Aminotransferase class-V:Phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D NE0439 serB; possible serB; phosphoserine phosphatase protein K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D NE0609 Glycine cleavage system P-protein K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2]
D NE0610 Glycine cleavage system P-protein K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2]
D NE0607 gcvT; Glycine cleavage T-protein (aminomethyl transferase) K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D NE2157 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D NE2319 lpdA3; pdA3; dihydrolipoamide dehydrogenase E3 component K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D NE0774 pyridine nucleotide-disulfide oxidoreductase, class I K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D NE0608 gcvH1; Glycine cleavage H-protein K02437 gcvH; glycine cleavage system H protein
D NE1321 pssA; pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D NE0380 Iron-sulfur-dependent L-serine dehydratase single chain form K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D NE0701 ilvA; ilvA, threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D NE0694 trpA; trpA; tryptophan synthase (alpha chain) protein K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D NE0693 trpB; Tryptophan synthase, beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:neu00270]
D NE1695 Bacterial transferase hexapeptide repeat K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D NE0575 Bacterial transferase hexapeptide repeat K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D NE2400 PatB; Aminotransferases class-I K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D NE1623 metH; metH Methionine synthase I, cobalamin-binding domain K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D NE1436 metE; Methionine synthase, vitamin-B12 independent K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D NE0659 metK; S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D NE0348 DUF206 K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D NE0347 speE; possible speE, ywhF; spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D NE1167 Purine and other phosphorylases, family 1 K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D NE1654 DUF152 K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D NE1754 Purine and other phosphorylases family 2 K19696 mtiP; 5'-methylthioinosine phosphorylase [EC:2.4.2.44]
D NE0660 ahcY; S-adenosyl-L-homocysteine hydrolase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D NE2132 lysC; Aspartokinase superfamily:ACT domain K00928 lysC; aspartate kinase [EC:2.7.2.4]
D NE0689 asd; Semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D NE2369 Homoserine dehydrogenase:ACT domain K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D NE2186 metX; Alpha/beta hydrolase fold K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D NE1697 metY; Cys/Met metabolism pyridoxal-phosphate-dependent enzymes K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D NE0700 metZ; Cys/Met metabolism pyridoxal-phosphate-dependent enzymes K10764 metZ; O-succinylhomoserine sulfhydrylase [EC:2.5.1.-]
D NE1893 ilvE; Aminotransferases class-IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D NE1294 putative glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D NE1295 gshB; gshB; glutathione synthetase protein K01920 gshB; glutathione synthase [EC:6.3.2.3]
D NE0786 aatA; Aminotransferases class-I K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D NE0773 Lactate/malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D NE0380 Iron-sulfur-dependent L-serine dehydratase single chain form K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D NE1443 cysM; Pyridoxal-5'-phosphate-dependent enzymes, beta family K12339 cysM; S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent) [EC:2.5.1.144]
D NE0334 D-isomer specific 2-hydroxyacid dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D NE1688 serA; D-isomer specific 2-hydroxyacid dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D NE0333 serC; Aminotransferase class-V:Phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:neu00280]
D NE1893 ilvE; Aminotransferases class-IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D NE2157 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D NE2319 lpdA3; pdA3; dihydrolipoamide dehydrogenase E3 component K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D NE0774 pyridine nucleotide-disulfide oxidoreductase, class I K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D NE2348 fadE1; Acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7]
D NE1527 Thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D NE2262 bktB; Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:neu00290]
D NE0701 ilvA; ilvA, threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D NE0685 leuC; leuC; 3-isopropylmalate dehydratase (large subunit) K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D NE0687 leuD; leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D NE0688 leuB; leuB, 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D NE1325 ilvI; Thiamine pyrophosphate dependent enzyme K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D NE1324 ilvH; probable acetolactate synthase isozyme III (small subunit) K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D NE1323 ilvC; probable ketol-acid reductoisomerase oxidoreductase protein K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D NE0104 Dihydroxyacid dehydratase/phosphogluconate dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D NE1893 ilvE; Aminotransferases class-IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D NE2368 Aspartate aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D NE1320 leuA1; HMG-CoA Lyase-like family K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:neu00300]
D NE2369 Homoserine dehydrogenase:ACT domain K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D NE2132 lysC; Aspartokinase superfamily:ACT domain K00928 lysC; aspartate kinase [EC:2.7.2.4]
D NE0689 asd; Semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D NE2403 dapA; Dihydrodipicolinate synthetase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D NE0614 Dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D NE2462 dapD; Bacterial transferase hexapeptide repeat K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D NE1439 argD; argD; acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D NE2463 dapC; Aminotransferases class-I K14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17]
D NE0108 dapE; Peptidase family M20/M25/M40 K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D NE1612 dapF; Diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D NE1126 Orn/DAP/Arg decarboxylases family 2 K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D NE1957 Orn/DAP/Arg decarboxylases family 2 K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D NE0986 murE; murE; UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D NE0987 murF; murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase protein K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:neu00310]
D NE2375 sucB; sucB; dihydrolipoamide succinyltransferase (component of 2-oxoglutarate dehydrogenase complex) protein K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D NE2157 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D NE2319 lpdA3; pdA3; dihydrolipoamide dehydrogenase E3 component K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D NE0774 pyridine nucleotide-disulfide oxidoreductase, class I K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D NE2262 bktB; Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D NE2000 gabD; Aldehyde dehydrogenase family K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D NE1486 Aminotransferases class-IV K00824 dat; D-alanine transaminase [EC:2.6.1.21]
C 00220 Arginine biosynthesis [PATH:neu00220]
D NE1438 argF; argF; ornithine carbamoyltransferase protein K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D NE1437 argG; Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D NE1854 argH; argH: argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D NE2420 Biotin / Lipoyl attachment:Carbamoyl-phosphate synthase:DUF183 K01941 uca; urea carboxylase [EC:6.3.4.6]
D NE2416 Biotin / Lipoyl attachment:DUF183:DUF213 K01941 uca; urea carboxylase [EC:6.3.4.6]
D NE0504 glnA1; Glutamine synthetase type I, glnA K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D NE1616 gdhA; Glutamate/leucine/phenylalanine/valine dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D NE0786 aatA; Aminotransferases class-I K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D NE2368 Aspartate aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D NE0778 argA; GCN5-related N-acetyltransferase:Aspartokinase superfamily K14682 argAB; amino-acid N-acetyltransferase [EC:2.3.1.1]
D NE2213 argJ; ArgJ family K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]
D NE1005 argB; Aspartokinase superfamily:Acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D NE1482 argC; argC; N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D NE1439 argD; argD; acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
C 00330 Arginine and proline metabolism [PATH:neu00330]
D NE1147 Arginase family K01480 speB; agmatinase [EC:3.5.3.11]
D NE0909 speC; Orn/DAP/Arg decarboxylases family 2 K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
D NE0347 speE; possible speE, ywhF; spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D NE0348 DUF206 K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D NE0142 putative aminotransferase protein K00819 rocD; ornithine--oxo-acid transaminase [EC:2.6.1.13]
D NE0393 proC; Delta 1-pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D NE1290 proB; Aspartokinase superfamily:Glutamate 5-kinase:PUA domain K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D NE2158 proA; Gamma-glutamyl phosphate reductase:Aldehyde dehydrogenase family K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D NE2295 prolyl aminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D NE0786 aatA; Aminotransferases class-I K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D NE1486 Aminotransferases class-IV K00824 dat; D-alanine transaminase [EC:2.6.1.21]
C 00340 Histidine metabolism [PATH:neu00340]
D NE0871 hisG; ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D NE1282 ATP phosphoribosyltransferase regulatory subunit K02502 hisZ; ATP phosphoribosyltransferase regulatory subunit
D NE0641 hisE; Phosphoribosyl-ATP pyrophosphohydrolase K01523 hisE; phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31]
D NE0642 hisI; Phosphoribosyl-AMP cyclohydrolase K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19]
D NE0644 hisA; hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase protein K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D NE0645 hisH; Glutamine amidotransferase class-I K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D NE0643 hisF; hisF Imidazoleglycerol-phosphate synthase K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D NE0646 hisB; Imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
D NE0336 hisC2; Aminotransferases class-I K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D NE0647 hisC1; Aminotransferases class-I K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D NE0872 hisD; Histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
C 00350 Tyrosine metabolism [PATH:neu00350]
D NE0786 aatA; Aminotransferases class-I K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D NE0336 hisC2; Aminotransferases class-I K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D NE0647 hisC1; Aminotransferases class-I K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D NE1241 Tyrosinase K00505 TYR; tyrosinase [EC:1.14.18.1]
D NE0907 adhC1; Alcohol dehydrogenase class III and related dehydrogenases K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D NE2000 gabD; Aldehyde dehydrogenase family K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D NE0742 Zinc-containing alcohol dehydrogenase superfamily K00055 E1.1.1.90; aryl-alcohol dehydrogenase [EC:1.1.1.90]
C 00360 Phenylalanine metabolism [PATH:neu00360]
D NE0786 aatA; Aminotransferases class-I K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D NE0336 hisC2; Aminotransferases class-I K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D NE0647 hisC1; Aminotransferases class-I K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D NE0742 Zinc-containing alcohol dehydrogenase superfamily K00055 E1.1.1.90; aryl-alcohol dehydrogenase [EC:1.1.1.90]
D NE1486 Aminotransferases class-IV K00824 dat; D-alanine transaminase [EC:2.6.1.21]
C 00380 Tryptophan metabolism [PATH:neu00380]
D NE2375 sucB; sucB; dihydrolipoamide succinyltransferase (component of 2-oxoglutarate dehydrogenase complex) protein K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D NE2157 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D NE2319 lpdA3; pdA3; dihydrolipoamide dehydrogenase E3 component K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D NE0774 pyridine nucleotide-disulfide oxidoreductase, class I K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D NE2262 bktB; Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D NE1886 katA; Catalase K03781 katE; catalase [EC:1.11.1.6]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:neu00400]
D NE0831 DAHP synthetase class I K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D NE1981 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D NE0651 aroQ1; Dehydroquinase class II K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D NE1627 aroE1; Shikimate / quinate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D NE1980 aroK; Shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D NE1964 aroA; EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D NE1877 aroC; Chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D NE2150 trpE; Anthranilate synthase component I and chorismate binding enzyme K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D NE0014 trpG; trpG; panthranilate synthase component II (glutamine amido-transferase) protein K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D NE0013 trpD; phosphoribosylanthranilate transferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D NE0692 trpF; N-(5'phosphoribosyl)anthranilate isomerase (PRAI) K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]
D NE0012 trpC; Indole-3-glycerol phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D NE0694 trpA; trpA; tryptophan synthase (alpha chain) protein K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D NE0693 trpB; Tryptophan synthase, beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D NE0335 pheA; Prephenate dehydratase (PDT):Chorismate mutase:ACT domain K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D NE0337 tyrA; Prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D NE0786 aatA; Aminotransferases class-I K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D NE0336 hisC2; Aminotransferases class-I K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D NE0647 hisC1; Aminotransferases class-I K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism
D NE0073 panC; Pantoate-beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
C 00430 Taurine and hypotaurine metabolism [PATH:neu00430]
D NE1331 ggt2; Gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D NE0022 alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D NE0298 pta; Phosphate acetyl/butaryl transferase:Phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D NE2134 ackA2; Acetate and butyrate kinase:Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:neu00450]
D NE2400 PatB; Aminotransferases class-I K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D NE1623 metH; metH Methionine synthase I, cobalamin-binding domain K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D NE1436 metE; Methionine synthase, vitamin-B12 independent K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D NE1447 Aminotransferase class-V K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D NE0573 Aminotransferase class-V K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D NE1929 trxB; FAD-dependent pyridine nucleotide-disulphide oxidoreductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D NE0857 cysN; GTP-binding elongation factor:Elongation factor Tu domain 2 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D NE0856 cysD; Phosphoadenosine phosphosulfate reductase K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D NE0733 selD; AIR synthase related protein:Selenide water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D NE0625 metG1; Methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:neu00460]
D NE1331 ggt2; Gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D NE1433 glyA; Serine hydroxymethyltransferase (SHMT) K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:neu00470]
D NE1417 dadX; Alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D NE1486 Aminotransferases class-IV K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D NE0994 ddlB; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D NE0449 murI; Aspartate and glutamate racemases:Glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D NE0989 murD; UDP-N-acetylmuramoylalanine-D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D NE1612 dapF; Diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D NE1126 Orn/DAP/Arg decarboxylases family 2 K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D NE1957 Orn/DAP/Arg decarboxylases family 2 K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
C 00480 Glutathione metabolism [PATH:neu00480]
D NE1331 ggt2; Gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D NE1294 putative glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D NE1295 gshB; gshB; glutathione synthetase protein K01920 gshB; glutathione synthase [EC:6.3.2.3]
D NE0441 aminopeptidase A/I K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D NE0569 Cytosol aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D NE0626 pepN; Aminopeptidase N, APN (CD13) K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D NE1952 putative glutathione S-transferase protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D NE1908 possible glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D NE1730 icd; icd; isocitrate dehydrogenase [NADP] oxidoreductase protein K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D NE0397 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D NE0398 zwf; Glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D NE1206 Glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
D NE0909 speC; Orn/DAP/Arg decarboxylases family 2 K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
D NE0347 speE; possible speE, ywhF; spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation
C 00540 Lipopolysaccharide biosynthesis [PATH:neu00540]
D NE2164 lpxK; Tetraacyldisaccharide-1-P 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D NE1686 Cytidylyltransferase (CMP-NeuAc synthetase) K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D NE1185 putative phosphatase protein K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D NE1682 possible transmembrane protein K02847 waaL; O-antigen ligase [EC:2.4.99.26]
C 00542 O-Antigen repeat unit biosynthesis
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:neu00541]
D NE1382 galU1; ADP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D NE1689 possible epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D NE0679 NAD dependent epimerase/dehydratase family K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D NE1343 udg; UDP-glucose/GDP-mannose dehydrogenase family K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D NE2277 NAD dependent epimerase/dehydratase family K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D NE0677 rmlA; ADP-glucose pyrophosphorylase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D NE0469 rmlB; NAD dependent epimerase/dehydratase family K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D NE0678 rmlC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D NE1023 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D NE2167 DegT/DnrJ/EryC1/StrS family K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59]
D NE0594 putative reductase oxidoreductase protein K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1]
D NE2250 putative mannose-1-phosphate guanylyltransferase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]
D NE0208 glmU; glmU; UDP-N-acetylglucosamine pyrophosphorylase protein K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D NE0486 rffE; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D NE2249 wbpI; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D NE0502 wbpM; Polysaccharide biosynthesis protein CapD type K24300 wbpM; UDP-N-acetylglucosamine 4,6-dehydratase [EC:4.2.1.135]
D NE0500 putative UDP-glucose 4-epimerase K24310 wbpV; UDP-N-acetyl-alpha-D-quinovosamine dehydrogenase [EC:1.1.1.426]
D NE2276 tviB; UDP-glucose/GDP-mannose dehydrogenase family K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-]
C 00550 Peptidoglycan biosynthesis [PATH:neu00550]
D NE1852 murA; EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D NE0993 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D NE0992 murC; murC; UDP-N-acetylmuramate--alanine ligase protein K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D NE0989 murD; UDP-N-acetylmuramoylalanine-D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D NE0986 murE; murE; UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D NE0994 ddlB; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D NE0987 murF; murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase protein K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D NE1714 Undecaprenyl pyrophosphate synthetase family K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D NE0039 bacA; Bacitracin resistance protein BacA K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D NE0988 mraY; mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D NE0991 murG; Glycosyltransferase family 28 K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D NE1628 mtgA; Glycosyltransferase family 51 K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D NE2317 mrcA; mrcA; penicillin-binding 1 (peptidoglycan synthetase) transmembrane protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D NE2067 Penicillin binding protein transpeptidase domain K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D NE0985 ftsI; Penicillin binding protein transpeptidase domain K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D NE1485 dac; D-alanyl-D-alanine carboxypeptidase 1 (S11) family K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D NE0053 D-Ala-D-Ala carboxypeptidase 3 (S13) family K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
C 00552 Teichoic acid biosynthesis [PATH:neu00552]
D NE0039 bacA; Bacitracin resistance protein BacA K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D NE0502 wbpM; Polysaccharide biosynthesis protein CapD type K24300 wbpM; UDP-N-acetylglucosamine 4,6-dehydratase [EC:4.2.1.135]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:neu00543]
D NE1054 algI; putative alginate O-acetylation protein K19294 algI; alginate O-acetyltransferase complex protein AlgI
D NE1055 conserved hypothetical protein K19295 algJ; alginate O-acetyltransferase complex protein AlgJ
D NE1695 Bacterial transferase hexapeptide repeat K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D NE0575 Bacterial transferase hexapeptide repeat K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:neu00730]
D NE0038 thiC; ThiC family K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D NE1425 thiD; putative phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D NE0174 Aminotransferase class-V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D NE0650 NAD binding site:D-amino acid oxidase K03153 thiO; glycine oxidase [EC:1.4.3.19]
D NE1161 dxs; Transketolase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D NE0284 thiG; Proteins binding FMN and related compounds core region K03149 thiG; thiazole synthase [EC:2.8.1.10]
D NE1424 Thiamine monophosphate synthase (TMP) K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D NE2559 thiL; AIR synthase related protein K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D NE0078 putative ATP-binding protein K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D NE1933 adk; Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:neu00740]
D NE2556 ribAB; ribAB; riboflavin biosynthesis bifunctional protein: GTP cyclohydrolase II and 3,4-dihydroxy-2-butanone-4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D NE0793 ribD; Riboflavin biosynthesis bifunctional RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D NE2557 ribH; 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D NE2555 Riboflavin synthase alpha chain family lumazine binding domain K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D NE1150 ribF; Cytidylyltransferase:Riboflavin kinase / FAD synthetase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D NE2470 NUDIX hydrolase:Conserved hypothetical protein 52 K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D NE0058 Flavoprotein K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00750 Vitamin B6 metabolism [PATH:neu00750]
D NE0333 serC; Aminotransferase class-V:Phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D NE0883 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262]
D NE2322 pdxJ; Pyridoxal phosphate biosynthetic protein PdxJ K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2]
D NE2370 thrC; thrC; probable threonine synthase protein K01733 thrC; threonine synthase [EC:4.2.3.1]
C 00760 Nicotinate and nicotinamide metabolism [PATH:neu00760]
D NE1892 nadB1; nadB1; l-aspartate oxidase (quinolinate synthetase B) oxidoreductase protein K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D NE0066 nadA; Quinolinate synthetase A protein K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D NE2122 nadC; nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) quinolinate phosphoribosyltransferase (decarboxylating) K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D NE0950 surE; Survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D NE0359 nadD; Cytidylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D NE1896 nadE; Carbon-nitrogen hydrolase:NAD+ synthase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
D NE2561 ygaD; Competence-damaged protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D NE1478 Domain of unknown function DUF15 K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D NE0860 pntAb2; probable transmembrane NAD(P) transhydrogenase (alpha subunit part 2) K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D NE0859 pntAa; Alanine dehydrogenase and pyridine nucleotide transhydrogenase K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D NE0861 pntB; NAD(P) transhydrogenase beta subunit K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1]
D NE2000 gabD; Aldehyde dehydrogenase family K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00770 Pantothenate and CoA biosynthesis [PATH:neu00770]
D NE1325 ilvI; Thiamine pyrophosphate dependent enzyme K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D NE1324 ilvH; probable acetolactate synthase isozyme III (small subunit) K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D NE1323 ilvC; probable ketol-acid reductoisomerase oxidoreductase protein K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D NE0104 Dihydroxyacid dehydratase/phosphogluconate dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D NE0072 panB; Ketopantoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D NE0073 panC; Pantoate-beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D NE2459 birA; putative BirA bifunctional protein K03525 coaX; type III pantothenate kinase [EC:2.7.1.33]
D NE1463 dfp; Flavoprotein K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D NE0968 coaD; Coenzyme A biosynthesis protein:Cytidylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D NE0598 Uncharacterized protein family UPF0038 K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D NE2321 acpS; acpS: holo-(acyl-carrier-protein) synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D NE1893 ilvE; Aminotransferases class-IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
C 00780 Biotin metabolism [PATH:neu00780]
D NE2297 bioC; SAM (and some other nucleotide) binding motif K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197]
D NE1650 fabF1; Beta-ketoacyl synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D NE1648 fabG1; Short-chain dehydrogenase/reductase (SDR) superfamily K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D NE1708 fabZ; Bacterial thioester dehydrase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D NE2205 Short-chain dehydrogenase/reductase (SDR) superfamily K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D NE2298 bioH; possible BioH, catalyzes some early step in biotin biosynthesis K02170 bioH; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85]
D NE2299 bioF; Aminotransferases class-I K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D NE1655 Aminotransferases class-I K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D NE1388 rkpG; Aminotransferases class-I K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D NE0026 bioA; Aminotransferase class-III pyridoxal-phosphate K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D NE2296 bioD; Cobyrinic acid a,c-diamide synthase:Dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D NE2300 bioB; Biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6]
D NE2460 birA; birA_ligase: biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:neu00785]
D NE1488 lipB; lipB: lipoate-protein ligase B K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D NE1489 lipA; Lipoate synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D NE2157 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D NE2319 lpdA3; pdA3; dihydrolipoamide dehydrogenase E3 component K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D NE0774 pyridine nucleotide-disulfide oxidoreductase, class I K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D NE0361 aceE; aceE; pyruvate dehydrogenase e1 component oxidoreductase protein K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D NE0360 aceF; aceF; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (e2) protein K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D NE2374 odhA; Transketolase:Dehydrogenase, E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D NE2375 sucB; sucB; dihydrolipoamide succinyltransferase (component of 2-oxoglutarate dehydrogenase complex) protein K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D NE0609 Glycine cleavage system P-protein K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2]
D NE0610 Glycine cleavage system P-protein K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2]
D NE0607 gcvT; Glycine cleavage T-protein (aminomethyl transferase) K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D NE0608 gcvH1; Glycine cleavage H-protein K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:neu00790]
D NE1163 DUF198 K09007 folE2; GTP cyclohydrolase IB [EC:3.5.4.16]
D NE2253 ntpA; NUDIX hydrolase K08310 nudB; dihydroneopterin triphosphate diphosphatase [EC:3.6.1.67]
D NE0223 Dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D NE0070 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D NE0529 folP; Dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D NE0567 dfrA; Dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D NE0696 folC; Cytoplasmic peptidoglycan synthetases, C-terminal K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D NE2556 ribAB; ribAB; riboflavin biosynthesis bifunctional protein: GTP cyclohydrolase II and 3,4-dihydroxy-2-butanone-4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D NE1517 6-pyruvoyl tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D NE0077 Pterin 4 alpha carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D NE1165 Short-chain dehydrogenase/reductase (SDR) superfamily K03793 PTR1; pteridine reductase [EC:1.5.1.33]
D NE0221 Radical activating enzymes K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D NE0222 ExsB protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D NE2285 conserved hypothetical protein K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
C 00670 One carbon pool by folate [PATH:neu00670]
D NE0567 dfrA; Dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D NE0362 folD; Tetrahydrofolate dehydrogenase/cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D NE1433 glyA; Serine hydroxymethyltransferase (SHMT) K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D NE0087 purN; purN; phosphoribosylglycinamide formyltransferase protein K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D NE0876 purH; probable phosphoribosylaminoimidazolecarboxamide formyltransferase and IMP cyclodydrolase transmembrane protein K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D NE1971 fmt; Formyl transferase N-terminus:Methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D NE0607 gcvT; Glycine cleavage T-protein (aminomethyl transferase) K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D NE1623 metH; metH Methionine synthase I, cobalamin-binding domain K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D NE0568 thyB; Thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D NE0661 metF; metF; 5,10-methylenetetrahydrofolate reductase oxidoreductase protein K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D NE0057 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:neu00860]
D NE1624 gltX; gltX; glutamate-tRNA synthetase (catalytic subunit)(sye protein) K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D NE1914 hemA; Glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D NE1423 hemL; hemL; glutamate-1-semialdehyde 2,1-aminomutase protein K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D NE2457 Delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D NE0590 hemC; Porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D NE0591 hemD; Uroporphyrinogen III synthase HEM4 K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D NE0445 Uroporphyrinogen decarboxylase (URO-D) K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D NE1876 hemF; Coproporphyrinogen III oxidase K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3]
D NE1756 conserved hypothetical protein K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-]
D NE1476 hemH; Ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D NE0592 possible uroporphyrin-III C-methyltransferase K02496 hemX; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D NE0532 cysG; cysG_2; Uroporphyrinogen-III methylase K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]
D NE1010 ctaB; UbiA prenyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D NE0431 Cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9]
D NE0757 CobN/magnesium chelatase K02230 cobN; cobaltochelatase CobN [EC:6.6.1.2]
D NE0634 cobO; ATP:corrinoid adenosyltransferase BtuR/CobO/CobP K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D NE0863 bfr; Bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:neu00130]
D NE1837 putative chorismate--pyruvate lyase K03181 ubiC; chorismate lyase [EC:4.1.3.40]
D NE1838 ubiA; UbiA prenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D NE1839 Protein of unknown function DUF117 K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98]
D NE0058 Flavoprotein K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D NE1512 Aromatic-ring hydroxylase (flavoprotein monooxygenase) K18800 ubiI; 2-polyprenylphenol 6-hydroxylase [EC:1.14.13.240]
D NE2547 ubiG; ubiG, 3-demethylubiquinone-9 3-methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
D NE0873 ubiH; Aromatic-ring hydroxylase (flavoprotein monooxygenase) K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
D NE1146 UbiE; ubiquinone/menaquinone biosynthesis methlytransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D NE1669 conserved hypothetical protein K06134 COQ7; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60]
D NE0832 DUF157 K19222 menI; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:neu00900]
D NE1161 dxs; Transketolase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D NE1712 dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D NE1412 4-diphosphocytidyl-2C-methyl-D-erythritol synthase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D NE1827 ipk; ipk; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D NE1402 YgbB family:2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D NE0148 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D NE0149 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D NE0649 lytB; LytB protein K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D NE2262 bktB; Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D NE0058 Flavoprotein K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D NE1160 ispA; Polyprenyl synthetase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D NE1915 ispB; Polyprenyl synthetase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D NE1714 Undecaprenyl pyrophosphate synthetase family K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D NE0076 Peptidase family M48 K06013 STE24; STE24 endopeptidase [EC:3.4.24.84]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis [PATH:neu00909]
D NE1168 Prenyltransferase and squalene oxidase repeats K06045 shc; squalene-hopene/tetraprenyl-beta-curcumene cyclase [EC:5.4.99.17 4.2.1.129]
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis [PATH:neu00906]
D NE1958 fdfT; Squalene and phytoene synthases K10208 crtM; 4,4'-diapophytoene synthase [EC:2.5.1.96]
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation [PATH:neu00907]
D NE1527 Thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D NE0328 cbbT; Transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:neu00523]
D NE0677 rmlA; ADP-glucose pyrophosphorylase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D NE0469 rmlB; NAD dependent epimerase/dehydratase family K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D NE0678 rmlC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D NE1023 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
C 01055 Biosynthesis of vancomycin group antibiotics
D NE0469 rmlB; NAD dependent epimerase/dehydratase family K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
D NE1123 Penicillin amidase K01434 pac; penicillin G amidase [EC:3.5.1.11]
C 00332 Carbapenem biosynthesis [PATH:neu00332]
D NE1290 proB; Aspartokinase superfamily:Glutamate 5-kinase:PUA domain K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D NE2158 proA; Gamma-glutamyl phosphate reductase:Aldehyde dehydrogenase family K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:neu00261]
D NE0857 cysN; GTP-binding elongation factor:Elongation factor Tu domain 2 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D NE0856 cysD; Phosphoadenosine phosphosulfate reductase K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D NE2132 lysC; Aspartokinase superfamily:ACT domain K00928 lysC; aspartate kinase [EC:2.7.2.4]
D NE0689 asd; Semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D NE2403 dapA; Dihydrodipicolinate synthetase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D NE0614 Dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:neu00521]
D NE1694 Glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D NE1895 Phosphoglucomutase and phosphomannomutase family K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D NE1954 suhB; suhB; inositol monophosphatase (extragenic suppressor protein) K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D NE0781 myo-inositol-1(or 4)-monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D NE0677 rmlA; ADP-glucose pyrophosphorylase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D NE0469 rmlB; NAD dependent epimerase/dehydratase family K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D NE0678 rmlC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D NE1023 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D NE1694 Glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis [PATH:neu00525]
D NE0677 rmlA; ADP-glucose pyrophosphorylase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D NE0469 rmlB; NAD dependent epimerase/dehydratase family K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:neu00401]
D NE0337 tyrA; Prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D NE0786 aatA; Aminotransferases class-I K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D NE0336 hisC2; Aminotransferases class-I K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D NE0647 hisC1; Aminotransferases class-I K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D NE2150 trpE; Anthranilate synthase component I and chorismate binding enzyme K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D NE0014 trpG; trpG; panthranilate synthase component II (glutamine amido-transferase) protein K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D NE1647 fabD; fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D NE1648 fabG1; Short-chain dehydrogenase/reductase (SDR) superfamily K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D NE2205 Short-chain dehydrogenase/reductase (SDR) superfamily K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D NE1649 Acyl carrier protein (ACP):Phosphopantetheine attachment site K02078 acpP; acyl carrier protein
D NE1656 Phosphopantetheine attachment site K02078 acpP; acyl carrier protein
D NE2163 hypothetical protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:neu00999]
D NE0659 metK; S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D NE1627 aroE1; Shikimate / quinate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:neu00362]
D NE1527 Thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D NE0932 putative isomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D NE1528 putative 3-hydroxyacyl-CoA dehydrogenase oxidoreductase protein K07516 fadN; 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
D NE2262 bktB; Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00627 Aminobenzoate degradation
D NE0058 Flavoprotein K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation [PATH:neu00625]
D NE0907 adhC1; Alcohol dehydrogenase class III and related dehydrogenases K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
C 00361 Chlorocyclohexane and chlorobenzene degradation
C 00623 Toluene degradation [PATH:neu00623]
D NE0742 Zinc-containing alcohol dehydrogenase superfamily K00055 E1.1.1.90; aryl-alcohol dehydrogenase [EC:1.1.1.90]
D NE0741 FAD linked oxidase, N-terminal:FAD linked oxidase, C-terminal K05797 pchF; 4-cresol dehydrogenase (hydroxylating) flavoprotein subunit [EC:1.17.9.1]
C 00622 Xylene degradation [PATH:neu00622]
D NE0742 Zinc-containing alcohol dehydrogenase superfamily K00055 E1.1.1.90; aryl-alcohol dehydrogenase [EC:1.1.1.90]
D NE0932 putative isomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00633 Nitrotoluene degradation [PATH:neu00633]
D NE2510 NADH:flavin oxidoreductase/NADH oxidase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]
C 00642 Ethylbenzene degradation
D NE1527 Thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 00643 Styrene degradation
C 00791 Atrazine degradation
D NE2420 Biotin / Lipoyl attachment:Carbamoyl-phosphate synthase:DUF183 K01941 uca; urea carboxylase [EC:6.3.4.6]
D NE2416 Biotin / Lipoyl attachment:DUF183:DUF213 K01941 uca; urea carboxylase [EC:6.3.4.6]
C 00930 Caprolactam degradation
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
D NE0932 putative isomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00626 Naphthalene degradation [PATH:neu00626]
D NE0907 adhC1; Alcohol dehydrogenase class III and related dehydrogenases K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:neu03020]
D NE2046 rpoB; RNA polymerases beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D NE2045 rpoC; RNA polymerase, alpha subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D NE0426 rpoA; Bacterial RNA polymerase, alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D NE2255 rpoZ; RNA polymerase omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:neu03010]
D NE1962 rpsA; Ribosomal protein S1:S1 RNA binding domain K02945 RP-S1; small subunit ribosomal protein S1
D NE1718 rpsB; Ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D NE0407 rpsC; Ribosomal protein S3:Type 2 KH domain:KH domain K02982 RP-S3; small subunit ribosomal protein S3
D NE0425 rpsD; Ribosomal protein S4:S4 domain K02986 RP-S4; small subunit ribosomal protein S4
D NE2143 rps4; Ribosomal protein S4:S4 domain K02986 RP-S4; small subunit ribosomal protein S4
D NE0418 rpsE; Ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D NE0198 rpsF; Ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D NE2054 rpsG; Ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D NE0415 rpsH; Ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D NE1483 rpsI; Ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D NE0400 rpsJ; Ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D NE0424 rpsK; Ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D NE2055 rpsL; Ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D NE0423 rpsM; Ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D NE0414 Ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D NE0173 rpsO; Ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D NE1671 rpsP; Ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D NE0410 Ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D NE0196 rpsR; Ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D NE0405 rpsS; Ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D NE2340 rpsT; Ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D NE0226 rpsU; Ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D NE2049 rplA; Ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D NE0404 Ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D NE0401 rplC; Ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D NE0402 rplD; Ribosomal protein L4/L1e K02926 RP-L4; large subunit ribosomal protein L4
D NE0413 Ribosomal protein L5:Mitochondrial ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D NE0416 rplF; Ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D NE2047 rplL; Ribosomal protein L7/L12 C-terminal domain K02935 RP-L7; large subunit ribosomal protein L7/L12
D NE0195 rplI; Ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D NE2048 rplJ; Ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D NE2050 rplK; Ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D NE1484 rplM; Ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D NE0411 Ribosomal protein L14b/L23e family K02874 RP-L14; large subunit ribosomal protein L14
D NE0420 Ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D NE0408 rplP; Ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D NE0427 Ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D NE0417 rplR; Ribosomal protein L18P/L5E:Ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D NE1674 rplS; Ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D NE0955 rplT; Ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D NE1293 rplU; Ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D NE0406 rplV; Ribosomal protein L22p / L17e K02890 RP-L22; large subunit ribosomal protein L22
D NE0403 rplW; Ribosomal L23 protein K02892 RP-L23; large subunit ribosomal protein L23
D NE0412 rplX; Ribosomal protein L24/bacterial NUSG:Ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D NE1825 rplY; Ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D NE1292 rpmA; Ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D NE1465 rpmB; Ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D NE0409 rpmC; Ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D NE0419 rpmD; Ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D NE1036 rpmE; Ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D NE1644 rpmF; probable 50S ribosomal subunit protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D NE1466 rpmG; Ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D NE0390 rpmH; Ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D NE0956 rpmI; Ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D RNA_45 16S_rRNA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RNA_46 23S_rRNA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RNA_42 rrnA; rRNA operon K01980 23SrRNA; 23S ribosomal RNA
D RNA_44 5S_rRNA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:neu00970]
D RNA_34 tRNAAla1; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RNA_41 tRNAAla2; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RNA_27 tRNAArg4; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RNA_8 tRNAArg1; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RNA_10 tRNAArg2; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RNA_12 tRNAArg3; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RNA_14 tRNAAsn1; tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D RNA_3 tRNAAsp1; tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D RNA_37 tRNACys1; tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D RNA_6 tRNAGln1; tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D RNA_35 tRNAGlu1; tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D RNA_24 tRNAGly2; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RNA_20 tRNAGly1; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RNA_36 tRNAGly3; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RNA_11 tRNAHis1; tRNA-His K14226 tRNA-His; tRNA His
D RNA_40 tRNAIle1; tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D RNA_38 tRNALeu4; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RNA_22 tRNALeu3; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RNA_39 tRNALeu5; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RNA_18 tRNALeu2; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RNA_7 tRNALeu1; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RNA_30 tRNALys1; tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D RNA_29 tRNAMet3; tRNA-Met K14230 tRNA-Met; tRNA Met
D RNA_19 tRNAMet2; tRNA-Met K14230 tRNA-Met; tRNA Met
D RNA_16 tRNAMet1; tRNA-Met K14230 tRNA-Met; tRNA Met
D RNA_13 tRNAPhe1; tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D RNA_9 tRNAPro1; tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D RNA_15 tRNAPro2; tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D RNA_33 tRNAPro3; tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D RNA_31 tRNASer3; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RNA_4 tRNASer1; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RNA_21 tRNASer2; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RNA_32 tRNASer4; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RNA_25 tRNAThr1; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RNA_28 tRNAThr3; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RNA_26 tRNAThr2; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RNA_5 tRNATrp1; tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D RNA_23 tRNATyr1; tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D RNA_17 tRNAVal3; tRNA-Val K14237 tRNA-Val; tRNA Val
D RNA_2 tRNAVal2; tRNA-Val K14237 tRNA-Val; tRNA Val
D RNA_1 tRNAVal1; tRNA-Val K14237 tRNA-Val; tRNA Val
D NE1624 gltX; gltX; glutamate-tRNA synthetase (catalytic subunit)(sye protein) K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D NE2072 gatA; Amidase:Glutamyl-tRNA(Gln) amidotransferase A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D NE2073 gatB; gatB: glutamyl-tRNA(Gln) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D NE2071 gatC; Glu-tRNAGln amidotransferase C subunit K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D NE2356 glnS; Glutamyl-tRNA synthetase:Glutaminyl-tRNA synthetase GlnS K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D NE2363 glnS; Glutamyl-tRNA synthetase:Glutaminyl-tRNA synthetase GlnS K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D NE1930 alaS; Alanyl-tRNA synthetase:DHHA1 domain K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D NE2252 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D NE1187 glyQ; Glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D NE1186 glyS; Glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D NE0958 thrS; thrS; threonyl-tRNA synthetase (threonine--tRNA ligase) protein K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D NE0180 serS; tRNA synthetases, class-II (G, H, P and S):Seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D NE0043 cysS; Cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D NE0625 metG1; Methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D NE1971 fmt; Formyl transferase N-terminus:Methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D NE0444 valS; probable valyl-tRNA synthetase (valine--tRNA ligase) protein K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D NE1139 leuS; t-RNA synthetase, class Ia:Leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D NE1149 ileS; t-RNA synthetase, class Ia:Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D NE2355 lysS; lysS; putative lysyl-tRNA synthetase protein K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D NE0364 argS; Arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D NE1317 proS; Prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D NE0150 hisS; hisS; histidine-tRNA synthetase protein K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D NE0954 pheS; pheS; phenylalanyl-tRNA synthetase, alpha-subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D NE0953 pheT; pheT; phenylalanyl-tRNA synthetase beta chain protein K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D NE1431 t-RNA synthetase, class Ib K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D NE1727 trpS; t-RNA synthetase, class Ib:Tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:neu03060]
D NE0421 secY; SecY protein K03076 secY; preprotein translocase subunit SecY
D NE1778 secG; Preprotein translocase SecG subunit K03075 secG; preprotein translocase subunit SecG
D NE1143 SecD/SecF/SecDF export membrane proteins K03072 secD; preprotein translocase subunit SecD
D NE1144 secF; protein-export membrane protein K03074 secF; preprotein translocase subunit SecF
D NE1142 Domain of unknown function DUF219 K03210 yajC; preprotein translocase subunit YajC
D NE0387 60Kd inner membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D NE0808 secA; SecA protein:SEC-C motif K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D NE2210 secB; Bacterial protein export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D NE1460 ffh; Signal recognition particle GTPase ffh protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D RNA_48 ffs; 4.5S RNA component of signal recognition particle (SRP) K01983 ffs; SRP RNA
D NE1415 pilA; Signal recognition particle GTPase, FtsY protein K03110 ftsY; fused signal recognition particle receptor
D NE0639 mttA/Hcf106 family K03116 tatA; sec-independent protein translocase protein TatA
D NE0638 mttA/Hcf106 family K03117 tatB; sec-independent protein translocase protein TatB
D NE0637 tatC; Uncharacterized protein family UPF0032 K03118 tatC; sec-independent protein translocase protein TatC
D NE2326 lepB; Bacterial leader peptidase 1 (S26A) family:Signal peptidase K03100 lepB; signal peptidase I [EC:3.4.21.89]
D NE1148 lspA; Signal peptidase II/lipoprotein signal peptidase family (A8) K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:neu04122]
D NE0174 Aminotransferase class-V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D NE1407 Uncharacterized protein family UPF0033 K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D NE0963 trmU; trmU; tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase protein K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D NE2351 DUF170 K03636 moaD; sulfur-carrier protein
D NE1783 thiF; NAD binding site:UBA/THIF-type NAD/FAD binding fold K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]
D NE2353 moeZ; Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 K21147 moeZR; sulfur-carrier protein adenylyltransferase/sulfurtransferase [EC:2.7.7.80 2.7.7.- 2.8.1.11 2.8.1.-]
D NE0285 DUF170 K03154 thiS; sulfur carrier protein
D NE2352 Mov34 family K21140 mec; [CysO sulfur-carrier protein]-S-L-cysteine hydrolase [EC:3.13.1.6]
C 03050 Proteasome
C 03018 RNA degradation [PATH:neu03018]
D NE1316 NUDIX hydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D NE1457 Ribonucleases G and E K08300 rne; ribonuclease E [EC:3.1.26.12]
D NE1044 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D NE0172 pnp; pnp; polyribonucleotide nucleotidyltransferase protein K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D NE2040 rhlE; rhlE; ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D NE0350 rnr; rnr; exoribonuclease RNAse R (vacB protein) K12573 rnr; ribonuclease R [EC:3.1.13.1]
D NE2564 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D NE0093 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D NE2520 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D NE1035 rho; rho; Transcription termination factor K03628 rho; transcription termination factor Rho
D NE1949 dnaK; Heat shock protein hsp70, molecular chaperone K04043 dnaK; molecular chaperone DnaK
D NE0028 groEL; TCP-1 (Tailless complex polypeptide)/cpn60 chaparonin family K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D NE1287 hfq; putative host factor-i protein K03666 hfq; host factor-I protein
D NE0323 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D NE0069 pcnB; Poly A polymerase family K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:neu03030]
D NE0141 dnaQ; probable DNA polymerase III (epsilon chain) protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D NE1978 dnaE1; dnaE1; DNA polymerase III (alpha chain) protein K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D NE0433 dnaX; dnaX; DNA polymerase III (subunits tau and gamma) protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D NE2180 holB; putative DNA polymerase III (delta' subunit) protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D NE1137 holA; putative DNA polymerase III (delta subunit) protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D NE0442 holC; putative DNA polymerase III (chi subunit) protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D NE0002 dnaN; DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D NE0194 dnaB; dnaB; replicative DNA helicase protein K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D NE0228 CHC2 zinc finger K02316 dnaG; DNA primase [EC:2.7.7.101]
D NE2453 ssb; Single-strand binding protein family K03111 ssb; single-strand DNA-binding protein
D NE0140 rnhA; probable ribonuclease hi protein K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D NE1707 rnhB; Ribonuclease HII and HIII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D NE1468 polA; polA; DNA polymerase I protein K02335 polA; DNA polymerase I [EC:2.7.7.7]
D NE1753 lig; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:neu03410]
D NE2223 nth; HhH-GPD:Iron-sulfur cluster loop (FCL) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D NE0056 mutY; HhH-GPD K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D NE2552 mutM; Formamidopyrimidine-DNA glycolase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D NE0981 HhH-GPD K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D NE1560 conserved hypothetical protein K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
D NE0931 conserved hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D NE1398 putative DNA polymerase-related protein, bacteriophage-type K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D NE2192 xthA2; Exodeoxyribonuclease III:Exodeoxyribonuclease III xth K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D NE0023 xthA1; Exodeoxyribonuclease III:Exodeoxyribonuclease III xth K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D NE1468 polA; polA; DNA polymerase I protein K02335 polA; DNA polymerase I [EC:2.7.7.7]
D NE0010 recJ; recJ: single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D NE1753 lig; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:neu03420]
D NE0008 mfd; mfd: transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D NE2455 uvrA1; ABC transporter:Excinuclease ABC A subunit K03701 uvrA; excinuclease ABC subunit A
D NE0785 uvrB; Helicase subunit of the DNA excision repair complex K03702 uvrB; excinuclease ABC subunit B
D NE0933 uvrC; uvrC Nuclease subunit of the excinuclease complex K03703 uvrC; excinuclease ABC subunit C
D NE1473 uvrD; UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D NE1468 polA; polA; DNA polymerase I protein K02335 polA; DNA polymerase I [EC:2.7.7.7]
D NE1753 lig; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:neu03430]
D NE1705 mutS; mutS; DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS
D NE0830 DNA mismatch repair protein MutS family, C-terminal domain K03555 mutS; DNA mismatch repair protein MutS
D NE1742 mutL; mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL
D NE1473 uvrD; UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D NE0671 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D NE1172 xseA; xseA; exodeoxyribonuclease vII large subunit protein K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D NE1159 xseB; Exonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D NE0010 recJ; recJ: single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D NE2453 ssb; Single-strand binding protein family K03111 ssb; single-strand DNA-binding protein
D NE1978 dnaE1; dnaE1; DNA polymerase III (alpha chain) protein K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D NE0002 dnaN; DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D NE0433 dnaX; dnaX; DNA polymerase III (subunits tau and gamma) protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D NE1137 holA; putative DNA polymerase III (delta subunit) protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D NE2180 holB; putative DNA polymerase III (delta' subunit) protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D NE0141 dnaQ; probable DNA polymerase III (epsilon chain) protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D NE0442 holC; putative DNA polymerase III (chi subunit) protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D NE1753 lig; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03440 Homologous recombination [PATH:neu03440]
D NE0010 recJ; recJ: single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D NE2453 ssb; Single-strand binding protein family K03111 ssb; single-strand DNA-binding protein
D NE1932 recA; RecA bacterial DNA recombination protein:AAA ATPase superfamily K03553 recA; recombination protein RecA
D NE1468 polA; polA; DNA polymerase I protein K02335 polA; DNA polymerase I [EC:2.7.7.7]
D NE0212 ruvA; probable Holliday junction DNA helicase subunit K03550 ruvA; holliday junction DNA helicase RuvA
D NE0213 ruvB; ruvB; holliday junction DNA helicase protein K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D NE0211 ruvC; Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D NE1850 recG; RecG-like helicases K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D NE2525 possible ATP-dependent DNA helicase RecG-related protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D NE0383 conserved hypothetical protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D NE1978 dnaE1; dnaE1; DNA polymerase III (alpha chain) protein K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D NE0002 dnaN; DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D NE0433 dnaX; dnaX; DNA polymerase III (subunits tau and gamma) protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D NE1137 holA; putative DNA polymerase III (delta subunit) protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D NE2180 holB; putative DNA polymerase III (delta' subunit) protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D NE0141 dnaQ; probable DNA polymerase III (epsilon chain) protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D NE0442 holC; putative DNA polymerase III (chi subunit) protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D NE1505 priA; probable priA; primosomal protein N' (replication factor Y) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D NE0197 conserved hypothetical protein K02686 priB; primosomal replication protein N
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1 [PATH:neu03250]
D NE0042 ppiA; Cyclophilin-type peptidyl-prolyl cis-trans isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus and Lyssavirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:neu02010]
D NE0582 sbp1; Prokaryotic sulfate-/thiosulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D NE0578 cysU; cysU; sulfate transport ABC transporter protein K02046 cysU; sulfate/thiosulfate transport system permease protein
D NE0577 cysW; cysW; sulfate transport ABC transporter protein K02047 cysW; sulfate/thiosulfate transport system permease protein
D NE0576 cysA; cysA; sulfate transport ATP-binding ABC transporter protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D NE1029 Bacterial extracellular solute-binding protein, family 1 K02012 afuA; iron(III) transport system substrate-binding protein
D NE1030 iron transport system permease protein K02011 afuB; iron(III) transport system permease protein
D NE1031 putative iron transport system ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D NE1873 potD; Bacterial extracellular solute-binding protein, family 1 K11069 potD; spermidine/putrescine transport system substrate-binding protein
D NE1872 potC; potC; putative spermidine/putrescine transport system permease protein K11070 potC; spermidine/putrescine transport system permease protein
D NE1871 potB; potB; putative spermidine/putrescine transport system permease protein K11071 potB; spermidine/putrescine transport system permease protein
D NE1870 potA; potA; putative spermidine/putrescine transport system ATP-binding protein K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D NE2381 putative signal peptide protein K07323 mlaC; phospholipid transport system substrate-binding protein
D NE0331 putative periplasmic transport protein K07323 mlaC; phospholipid transport system substrate-binding protein
D NE2382 mce related protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D NE1955 mce related protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D NE0106 possible ABC transport permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D NE2383 Domain of unknown function DUF140 K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D NE2380 STAS domain K07122 mlaB; phospholipid transport system transporter-binding protein
D NE0107 ATPase component Uncharacterized ABC-type transport system K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D NE2384 ATPase component Uncharacterized ABC-type transport system K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D NE0531 Phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D NE0999 phosphate transport system permease protein K02037 pstC; phosphate transport system permease protein
D NE1000 Phosphate permease component of ATP-dependent phosphate uptake system K02038 pstA; phosphate transport system permease protein
D NE1001 pstB; pstB; phosphate transport system ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D NE1384 kpsE; Chain length determinant protein K10107 kpsE; capsular polysaccharide transport system permease protein
D NE1386 rkpT1; ABC 2 transport system integral membrane protein K09688 kpsM; capsular polysaccharide transport system permease protein
D NE1385 rkpS; ATPase component ABC-type polysaccharide/polyol phosphate transport system K09689 kpsT; capsular polysaccharide transport system ATP-binding protein [EC:7.6.2.12]
D NE0472 ABC 2 transport system integral membrane protein K09690 wzm; homopolymeric O-antigen transport system permease protein
D NE0483 wzt; probable ATPase component ABC-type polysaccharide/polyol phosphate transport system K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D NE1057 DUF214 K09808 lolC_E; lipoprotein-releasing system permease protein
D NE1056 lolD; lolD; lipoprotein releasing system ATP-binding ABC transporter K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D NE0766 ccmC; ABC transporter, permease domain, ccmC, heme exporter K02195 ccmC; heme exporter protein C
D NE0765 ccmB; ABC transporter, permease domain, ccmB, heme exporter protein B K02194 ccmB; heme exporter protein B
D NE0764 ccmA; ccmA; ABC superfamily (atp_bind), heme exporter protein, cytochrome c-type biogenesis protein K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D NE0801 conserved hypothetical protein K07091 lptF; lipopolysaccharide export system permease protein
D NE0802 putative membrane protein K11720 lptG; lipopolysaccharide export system permease protein
D NE0063 ATPase component ABC-type (unclassified) transport system K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D NE1413 ftsX; DUF214 K09811 ftsX; cell division transport system permease protein
D NE1414 ftsE; Uncharacterized ABC-type transport system ATPase component/cell division protein K09812 ftsE; cell division transport system ATP-binding protein
D NE0376 ABC transporter, fused permease and ATPase domains K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump
D NE0159 ABC transporter, fused permease and ATPase domains K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D NE1081 probable ATP-binding/permease fusion ABC transporter K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
C 02060 Phosphotransferase system (PTS) [PATH:neu02060]
D NE2185 ptsI; PEP-utilizing enzyme K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D NE2184 ptsH; Phosphocarrier HPr protein K02784 ptsH; phosphocarrier protein HPr
D NE2183 conserved hypothetical protein K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D NE0060 ptsN; Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
C 03070 Bacterial secretion system [PATH:neu03070]
D NE0036 Outer membrane efflux protein K12340 tolC; outer membrane protein
D NE1604 General (type II) secretion pathway (GSP) D protein K02453 gspD; general secretion pathway protein D
D NE0705 General (type II) secretion pathway (GSP) D protein K02453 gspD; general secretion pathway protein D
D NE1610 Bacterial type II secretion system protein K02455 gspF; general secretion pathway protein F
D NE1256 Bacterial type II secretion system protein K02455 gspF; general secretion pathway protein F
D NE1603 putative general secretion pathway gspG related transmembrane protein K02456 gspG; general secretion pathway protein G
D NE1611 Bacterial general secretion pathway protein G K02456 gspG; general secretion pathway protein G
D NE1602 Bacterial general secretion pathway protein G K02456 gspG; general secretion pathway protein G
D NE1255 Bacterial general secretion pathway protein G K02456 gspG; general secretion pathway protein G
D NE1254 putative general secretory pathway protein H precursor K02457 gspH; general secretion pathway protein H
D NE1253 possible general secretory pathway protein I precursor K02458 gspI; general secretion pathway protein I
D NE1252 hypothetical protein K02459 gspJ; general secretion pathway protein J
D NE1257 Bacterial type II secretion system protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D NE1609 Bacterial type II secretion system protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D NE1143 SecD/SecF/SecDF export membrane proteins K03072 secD; preprotein translocase subunit SecD
D NE1144 secF; protein-export membrane protein K03074 secF; preprotein translocase subunit SecF
D NE1778 secG; Preprotein translocase SecG subunit K03075 secG; preprotein translocase subunit SecG
D NE0421 secY; SecY protein K03076 secY; preprotein translocase subunit SecY
D NE1142 Domain of unknown function DUF219 K03210 yajC; preprotein translocase subunit YajC
D NE0387 60Kd inner membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D NE0808 secA; SecA protein:SEC-C motif K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D NE1415 pilA; Signal recognition particle GTPase, FtsY protein K03110 ftsY; fused signal recognition particle receptor
D NE2210 secB; Bacterial protein export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D NE1460 ffh; Signal recognition particle GTPase ffh protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D NE0639 mttA/Hcf106 family K03116 tatA; sec-independent protein translocase protein TatA
D NE0638 mttA/Hcf106 family K03117 tatB; sec-independent protein translocase protein TatB
D NE0637 tatC; Uncharacterized protein family UPF0032 K03118 tatC; sec-independent protein translocase protein TatC
D NE0246 TRAG protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:neu02020]
D NE1288 phoR; Sensory transduction histidine kinases K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D NE2131 phoB; possible phoB; Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D NE0531 Phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D NE1408 Sensory transduction histidine kinases K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D NE1409 possible phoP; Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain K07660 phoP; two-component system, OmpR family, response regulator PhoP
D NE2329 mucD; mucD; serine protease MucD precursor K04771 degP; serine protease Do [EC:3.4.21.107]
D NE0515 baeS; Sensory transduction histidine kinases K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3]
D NE0514 possible baeR; Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain K07664 baeR; two-component system, OmpR family, response regulator BaeR
D NE2407 flhD; probable flagellar transcriptional activator transcription regulator protein K02403 flhD; flagellar transcriptional activator FlhD
D NE2406 flhC; probable flagellar transcriptional activator transcription regulator protein K02402 flhC; flagellar transcriptional activator FlhC
D NE1593 hag; hag; flagellin K02406 fliC; flagellin
D NE2491 fliA; Sigma-70 factor family K02405 fliA; RNA polymerase sigma factor FliA
D NE0046 motA; probable chemotaxis (motility protein A) transmembrane K02556 motA; chemotaxis protein MotA
D NE0431 Cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9]
D NE0001 dnaA; dnaA; chromosomal replication initiator protein K02313 dnaA; chromosomal replication initiator protein
D NE1113 HlyD family secretion protein K18094 mexX; membrane fusion protein, multidrug efflux system
D NE1112 RND multidrug efflux transporter K18095 mexY; multidrug efflux pump
D NE1738 Sensory transduction histidine kinases K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D NE0504 glnA1; Glutamine synthetase type I, glnA K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D NE1974 Sensory transduction histidine kinases K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D NE1975 NtrX; nitrogen assimilation regulatory protein K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX
D NE2262 bktB; Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D NE0062 rpoN1; Sigma-54 factor family K03092 rpoN; RNA polymerase sigma-54 factor
D NE1308 Fimbrial protein pilin:Bacterial general secretion pathway protein H K02650 pilA; type IV pilus assembly protein PilA
D NE0015 yfhK; Sensory transduction histidine kinases K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D NE0017 yfhA; putative transcriptional regulator of two-component regulator protein K07715 glrR; two-component system, NtrC family, response regulator GlrR
D NE1861 cheR; CheR-type MCP methyl-transferase:Generic methyl-transferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D NE1863 probable chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein
D NE1864 HAMP domain:Bacterial chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D NE1865 cheW; CheW-like domain K03408 cheW; purine-binding chemotaxis protein CheW
D NE1397 CheW-like domain K03408 cheW; purine-binding chemotaxis protein CheW
D NE1866 cheA; probable chemotaxis sensor histidine kinase transcription regulator protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D NE1923 cheY; Response regulator receiver domain K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D NE1859 cheB; CheB methylesterase:Response regulator receiver domain K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D NE1251 pilJ; Bacterial chemotaxis sensory transducer K02660 pilJ; twitching motility protein PilJ
D NE1006 pilI; CheW-like domain K02659 pilI; twitching motility protein PilI
D NE1250 two-component hybrid sensor and regulator K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator)
D NE1836 pilG; Response regulator receiver domain K02657 pilG; twitching motility two-component system response regulator PilG
D NE1007 pilH; Response regulator receiver domain K02658 pilH; twitching motility two-component system response regulator PilH
D NE2082 fleS; putative two-component sensor K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3]
D NE2081 sigma-54 dependent response regulator K10943 flrC; two-component system, response regulator FlrC
D NE1296 Cyclic nucleotide-binding domain:cAMP-dependent protein kinase K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D NE1314 probable two-component sensor K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3]
D NE1313 Response regulator receiver domain:Helix-turn-helix Fis-type K15012 regA; two-component system, response regulator RegA
D NE0809 Rieske iron-sulfur protein 2Fe-2S subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D NE0810 Cytochrome b/b6 K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D NE0811 petC; Cytochrome c1 K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D NE0102 cyt_c552; Cytochrome c-552 precursor K08738 CYC; cytochrome c
D NE0925 Cytochrome c, class IC:Cytochrome c, class I K00406 ccoP; cytochrome c oxidase cbb3-type subunit III
D NE0036 Outer membrane efflux protein K12340 tolC; outer membrane protein
D NE1387 Polysaccharide export protein K01991 wza; polysaccharide biosynthesis/export protein
D NE2279 yccZ; Polysaccharide export protein K01991 wza; polysaccharide biosynthesis/export protein
D NE1805 wza; putative polysaccharide export protein, outer membrane K01991 wza; polysaccharide biosynthesis/export protein
D NE1785 pt; Low molecular weight phosphotyrosine protein phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]
D NE2278 epsP; Low molecular weight phosphotyrosine protein phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]
D NE2280 epsB; Chain length determinant protein K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
D NE0486 rffE; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D NE2249 wbpI; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D NE1101 Sigma factor, ECF subfamily K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D NE1079 Sigma factor, ECF subfamily K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D NE0128 probable sigma-70 factor, ECF subfamily K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D NE0980 putative sigma-70 factor, ECF subfamily K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D NE1071 probable sigma-70 factor, ECF subfamily K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D NE1086 probable sigma-70 factor, ECF subfamily K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D NE1099 Sigma factor, ECF subfamily K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D NE0533 putative sigma-70 factor, ECF subfamily K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D NE2486 Sigma factor, ECF subfamily K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D NE1096 Sigma factor, ECF subfamily K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D NE2435 fecI; Probable fecI Specialized sigma subunits of RNA polymerase K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D NE1617 Sigma factor, ECF subfamily K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D NE1217 putative sigma-70 factor, ECF subfamily K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D NE1102 putative transmembrane sensor K07165 fecR; transmembrane sensor
D NE0127 putative transmembrane sensor K07165 fecR; transmembrane sensor
D NE1191 putative transmembrane sensor K07165 fecR; transmembrane sensor
D NE1218 fecR; putative FecR protein K07165 fecR; transmembrane sensor
D NE0817 putative transmembrane sensor K07165 fecR; transmembrane sensor
D NE1078 putative transmembrane sensor K07165 fecR; transmembrane sensor
D NE1085 putative transmembrane sensor K07165 fecR; transmembrane sensor
D NE1070 putative transmembrane sensor K07165 fecR; transmembrane sensor
D NE1095 putative transmembrane sensor K07165 fecR; transmembrane sensor
D NE1098 putative transmembrane sensor K07165 fecR; transmembrane sensor
D NE0542 possible transmembrane sensor K07165 fecR; transmembrane sensor
D NE0548 putative transmembrane sensor K07165 fecR; transmembrane sensor
D NE0555 possible transmembrane sensor K07165 fecR; transmembrane sensor
D NE0558 putative transcriptional regulator, putative K07165 fecR; transmembrane sensor
D NE0534 putative transmembrane sensor K07165 fecR; transmembrane sensor
D NE0979 putative transmembrane sensor K07165 fecR; transmembrane sensor
D NE2485 putative transmembrane sensor K07165 fecR; transmembrane sensor
D NE1989 putative transmembrane sensor K07165 fecR; transmembrane sensor
D NE2139 putative transmembrane sensor K07165 fecR; transmembrane sensor
D NE2434 putative transmembrane sensor K07165 fecR; transmembrane sensor
D NE2478 hypothetical protein K02398 flgM; negative regulator of flagellin synthesis FlgM
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis [PATH:neu04148]
D NE0909 speC; Orn/DAP/Arg decarboxylases family 2 K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
D NE0809 Rieske iron-sulfur protein 2Fe-2S subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:neu02024]
D NE1287 hfq; putative host factor-i protein K03666 hfq; host factor-I protein
D NE2150 trpE; Anthranilate synthase component I and chorismate binding enzyme K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D NE0014 trpG; trpG; panthranilate synthase component II (glutamine amido-transferase) protein K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D NE0831 DAHP synthetase class I K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D NE0015 yfhK; Sensory transduction histidine kinases K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D NE0017 yfhA; putative transcriptional regulator of two-component regulator protein K07715 glrR; two-component system, NtrC family, response regulator GlrR
D NE2407 flhD; probable flagellar transcriptional activator transcription regulator protein K02403 flhD; flagellar transcriptional activator FlhD
D NE2406 flhC; probable flagellar transcriptional activator transcription regulator protein K02402 flhC; flagellar transcriptional activator FlhC
D NE0621 DUF176 K11530 lsrG; (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase [EC:5.3.1.32]
D NE0161 Hemolysin-type calcium-binding region:RTX N-terminal domain K20276 bapA; large repetitive protein
D NE1549 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D NE2235 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D NE1296 Cyclic nucleotide-binding domain:cAMP-dependent protein kinase K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D NE0793 ribD; Riboflavin biosynthesis bifunctional RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D NE1111 Outer membrane efflux protein K18139 oprM; outer membrane protein, multidrug efflux system
D NE0170 oprM; Outer membrane efflux protein K18139 oprM; outer membrane protein, multidrug efflux system
D NE1080 Outer membrane efflux protein K18139 oprM; outer membrane protein, multidrug efflux system
D NE0538 Outer membrane efflux protein K18139 oprM; outer membrane protein, multidrug efflux system
D NE1152 hbpA; Bacterial extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D NE1153 appB; appB; oligopeptide ABC transporter K02033 ABC.PE.P; peptide/nickel transport system permease protein
D NE2479 appC; oligopeptide ABC transporter K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D NE2480 dppF; ATPase component ABC-type dipeptide/oligopeptide/nickel transport system K02031 ddpD; peptide/nickel transport system ATP-binding protein
D NE0387 60Kd inner membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D NE1778 secG; Preprotein translocase SecG subunit K03075 secG; preprotein translocase subunit SecG
D NE0421 secY; SecY protein K03076 secY; preprotein translocase subunit SecY
D NE1142 Domain of unknown function DUF219 K03210 yajC; preprotein translocase subunit YajC
D NE0808 secA; SecA protein:SEC-C motif K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D NE1415 pilA; Signal recognition particle GTPase, FtsY protein K03110 ftsY; fused signal recognition particle receptor
D NE2210 secB; Bacterial protein export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D NE1460 ffh; Signal recognition particle GTPase ffh protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:neu02030]
D NE1863 probable chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein
D NE1864 HAMP domain:Bacterial chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D NE1866 cheA; probable chemotaxis sensor histidine kinase transcription regulator protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D NE1865 cheW; CheW-like domain K03408 cheW; purine-binding chemotaxis protein CheW
D NE1397 CheW-like domain K03408 cheW; purine-binding chemotaxis protein CheW
D NE1923 cheY; Response regulator receiver domain K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D NE1924 cheZ1; putative chemotaxis protein CheZ K03414 cheZ; chemotaxis protein CheZ
D NE1859 cheB; CheB methylesterase:Response regulator receiver domain K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D NE1860 conserved hypothetical protein K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44]
D NE1861 cheR; CheR-type MCP methyl-transferase:Generic methyl-transferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D NE2084 fliG; Flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D NE0464 fliM; Flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D NE0463 fliN; possible flagellar motor switch FliN K02417 fliN; flagellar motor switch protein FliN
D NE0046 motA; probable chemotaxis (motility protein A) transmembrane K02556 motA; chemotaxis protein MotA
D NE0045 motB; Bacterial outer membrane protein K02557 motB; chemotaxis protein MotB
C 02040 Flagellar assembly [PATH:neu02040]
D NE2080 fliE; Flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D NE2083 fliF; fliF; flagellar M-ring transmembrane protein K02409 fliF; flagellar M-ring protein FliF
D NE2084 fliG; Flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D NE2085 fliH; Flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D NE2086 fliI; Flagellar ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D NE2087 fliJ; Flagellar FliJ protein K02413 fliJ; flagellar protein FliJ
D NE2088 possible flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK
D NE0465 fliL; putative flagellar fliL transmembrane protein K02415 fliL; flagellar protein FliL
D NE0464 fliM; Flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D NE0463 fliN; possible flagellar motor switch FliN K02417 fliN; flagellar motor switch protein FliN
D NE0462 possible mopB flagellar biosynthesis K02418 fliO; flagellar protein FliO/FliZ
D NE0461 fliP; Flagella transport protein FliP family K02419 fliP; flagellar biosynthesis protein FliP
D NE0460 fliQ; Bacterial export proteins, family 3 (FliQ) K02420 fliQ; flagellar biosynthesis protein FliQ
D NE0459 fliR; Bacterial export protein, family 1 K02421 fliR; flagellar biosynthesis protein FliR
D NE2488 flhA; Bacterial export FHIPEP family K02400 flhA; flagellar biosynthesis protein FlhA
D NE2487 flhB; FlhB HrpN YscU SpaS Family K02401 flhB; flagellar biosynthesis protein FlhB
D NE0301 flgA; putative flagella basal body P-ring formation protein K02386 flgA; flagellar basal body P-ring formation protein FlgA
D NE0302 flgB; Flagella basal body rod protein K02387 flgB; flagellar basal-body rod protein FlgB
D NE0303 flgC; Flagella basal body rod protein K02388 flgC; flagellar basal-body rod protein FlgC
D NE0304 flgD; putative basal-body rod modification protein FlgD K02389 flgD; flagellar basal-body rod modification protein FlgD
D NE0305 flgE; Flagella basal body rod protein K02390 flgE; flagellar hook protein FlgE
D NE0306 flgF; Flagella basal body rod protein K02391 flgF; flagellar basal-body rod protein FlgF
D NE0307 flgG; Flagella basal body rod protein K02392 flgG; flagellar basal-body rod protein FlgG
D NE0308 flgH; Flagellar L-ring protein K02393 flgH; flagellar L-ring protein FlgH
D NE0309 flgI; Flagellar P-ring protein K02394 flgI; flagellar P-ring protein FlgI
D NE0310 flgJ; Mannosyl-glycoprotein endo-beta-N-acetylglucosamidases K02395 flgJ; peptidoglycan hydrolase FlgJ
D NE0311 flgK; Flagella basal body rod protein K02396 flgK; flagellar hook-associated protein 1
D NE0312 flgL; Flagellin, N-terminus K02397 flgL; flagellar hook-associated protein 3 FlgL
D NE1593 hag; hag; flagellin K02406 fliC; flagellin
D NE1595 fliD; Flagellar hook-associated protein 2 K02407 fliD; flagellar hook-associated protein 2
D NE1596 fliS; Flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS
D NE1597 conserved hypothetical protein K02423 fliT; flagellar protein FliT
D NE0046 motA; probable chemotaxis (motility protein A) transmembrane K02556 motA; chemotaxis protein MotA
D NE0045 motB; Bacterial outer membrane protein K02557 motB; chemotaxis protein MotB
D NE2478 hypothetical protein K02398 flgM; negative regulator of flagellin synthesis FlgM
D NE2477 hypothetical protein K02399 flgN; flagellar biosynthesis protein FlgN
D NE0229 rpoD; DNA-dependent RNA polymerase sigma subunits (sigma70/32) K03086 rpoD; RNA polymerase primary sigma factor
D NE2407 flhD; probable flagellar transcriptional activator transcription regulator protein K02403 flhD; flagellar transcriptional activator FlhD
D NE2406 flhC; probable flagellar transcriptional activator transcription regulator protein K02402 flhC; flagellar transcriptional activator FlhC
D NE0062 rpoN1; Sigma-54 factor family K03092 rpoN; RNA polymerase sigma-54 factor
D NE2081 sigma-54 dependent response regulator K10943 flrC; two-component system, response regulator FlrC
D NE2491 fliA; Sigma-70 factor family K02405 fliA; RNA polymerase sigma factor FliA
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D NE1044 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
D NE1623 metH; metH Methionine synthase I, cobalamin-binding domain K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:neu01501]
D NE2191 ampG; putative transport transmembrane protein K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D NE2320 Glycoside hydrolase family 3, N terminal K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D NE1114 Bacterial regulatory proteins, TetR family K18129 mexZ; TetR/AcrR family transcriptional regulator, mexXY operon repressor
D NE1113 HlyD family secretion protein K18094 mexX; membrane fusion protein, multidrug efflux system
D NE1112 RND multidrug efflux transporter K18095 mexY; multidrug efflux pump
D NE0169 acrA; HlyD family secretion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D NE0168 multidrug resistance protein MexB K18138 acrB; multidrug efflux pump
D NE1111 Outer membrane efflux protein K18139 oprM; outer membrane protein, multidrug efflux system
D NE0170 oprM; Outer membrane efflux protein K18139 oprM; outer membrane protein, multidrug efflux system
D NE1080 Outer membrane efflux protein K18139 oprM; outer membrane protein, multidrug efflux system
D NE0538 Outer membrane efflux protein K18139 oprM; outer membrane protein, multidrug efflux system
D NE0036 Outer membrane efflux protein K12340 tolC; outer membrane protein
D NE2317 mrcA; mrcA; penicillin-binding 1 (peptidoglycan synthetase) transmembrane protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D NE2067 Penicillin binding protein transpeptidase domain K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D NE0985 ftsI; Penicillin binding protein transpeptidase domain K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:neu01502]
D NE0994 ddlB; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D NE1417 dadX; Alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D NE0987 murF; murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase protein K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D NE0988 mraY; mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D NE0991 murG; Glycosyltransferase family 28 K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:neu01503]
D NE1408 Sensory transduction histidine kinases K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D NE1409 possible phoP; Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain K07660 phoP; two-component system, OmpR family, response regulator PhoP
D NE0656 amiB; Cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D NE2329 mucD; mucD; serine protease MucD precursor K04771 degP; serine protease Do [EC:3.4.21.107]
D NE0366 dsbA; Thioredoxin:DSBA oxidoreductase K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D NE0042 ppiA; Cyclophilin-type peptidyl-prolyl cis-trans isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D NE0169 acrA; HlyD family secretion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D NE0168 multidrug resistance protein MexB K18138 acrB; multidrug efflux pump
D NE0036 Outer membrane efflux protein K12340 tolC; outer membrane protein
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:neu01000]
C 01001 Protein kinases [BR:neu01001]
D NE1310 hipA; possible HipA protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D NE2280 epsB; Chain length determinant protein K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
D NE0588 Phage integrase:Chain length determinant protein K16554 exoP; polysaccharide biosynthesis transport protein [EC:2.7.10.3]
D NE1803 yveL; possible similar to capsular polysaccharide biosynthesis K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3]
D NE1288 phoR; Sensory transduction histidine kinases K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D NE1408 Sensory transduction histidine kinases K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D NE0515 baeS; Sensory transduction histidine kinases K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3]
D NE1738 Sensory transduction histidine kinases K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D NE1974 Sensory transduction histidine kinases K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D NE0015 yfhK; Sensory transduction histidine kinases K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D NE1866 cheA; probable chemotaxis sensor histidine kinase transcription regulator protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D NE1250 two-component hybrid sensor and regulator K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator)
D NE2082 fleS; putative two-component sensor K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3]
D NE1314 probable two-component sensor K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:neu01009]
D NE0660 ahcY; S-adenosyl-L-homocysteine hydrolase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D NE1762 hptG; probable hptG; chaperone (heat shock protein htpg) K04079 HSP90A; molecular chaperone HtpG
D NE0439 serB; possible serB; phosphoserine phosphatase protein K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:neu01002]
D NE1148 lspA; Signal peptidase II/lipoprotein signal peptidase family (A8) K03101 lspA; signal peptidase II [EC:3.4.23.36]
D NE0597 pilD; Prepilin cysteine protease (C20), type IV K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D NE0094 guaA; guaA; GMP synthetase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D NE2357 NLP/P60 K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13]
D NE2364 NLP/P60 K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13]
D NE0699 purF; Glutamine amidotransferase class-II:Phosphoribosyl transferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D NE0209 glmS; Glutamine amidotransferase class-II:SIS domain K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D NE1795 Glutamine amidotransferase class-II:Asparagine synthase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D NE1127 asnB; Asparagine synthase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D NE1659 conserved hypothetical protein K16291 erfK; L,D-transpeptidase ErfK/SrfK
D NE2573 ycbB; putative periplasmic protein K21470 ycbB; L,D-transpeptidase YcbB
D NE0626 pepN; Aminopeptidase N, APN (CD13) K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D NE1663 prlC; Peptidase family M3 K01414 prlC; oligopeptidase A [EC:3.4.24.70]
D NE1416 Insulinase family (Peptidase family M16) K07263 pqqL; zinc protease [EC:3.4.24.-]
D NE0970 Insulinase family (Peptidase family M16) K07263 pqqL; zinc protease [EC:3.4.24.-]
D NE0441 aminopeptidase A/I K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D NE0569 Cytosol aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D NE0108 dapE; Peptidase family M20/M25/M40 K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D NE0275 map; Methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D NE2147 pepP; metallopeptidase family M24 K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D NE0528 hflB; hflB; ATP-dependent zinc metallopeptidase (cell division ftsh) transmembrane protein K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D NE0906 ftsH; ftsH; cell division protein K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D NE0076 Peptidase family M48 K06013 STE24; STE24 endopeptidase [EC:3.4.24.84]
D NE1421 htpX; Peptidase family M48 K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D NE1897 Peptidase family M48 K01423 bepA; beta-barrel assembly-enhancing protease [EC:3.4.-.-]
D NE1711 membrane-associated Zn-dependent proteases 1 K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D NE0619 hypothetical protein K09933 mtfA; MtfA peptidase
D NE2329 mucD; mucD; serine protease MucD precursor K04771 degP; serine protease Do [EC:3.4.21.107]
D NE1508 htra-like serine protease signal peptide protein K04772 degQ; serine protease DegQ [EC:3.4.21.-]
D NE1485 dac; D-alanyl-D-alanine carboxypeptidase 1 (S11) family K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D NE0053 D-Ala-D-Ala carboxypeptidase 3 (S13) family K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D NE0031 clpP; Clp protease K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D NE0033 lon; lon; ATP-dependent protease la protein K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D NE1278 lonA; lonA; ATP-dependent proteinase La 1 (lon) (class III heat-shock protein) K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D NE2326 lepB; Bacterial leader peptidase 1 (S26A) family:Signal peptidase K03100 lepB; signal peptidase I [EC:3.4.21.89]
D NE2295 prolyl aminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D NE1782 carboxy-terminal processing protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D NE1123 Penicillin amidase K01434 pac; penicillin G amidase [EC:3.5.1.11]
D NE1024 Peptidase family U7 K04773 sppA; protease IV [EC:3.4.21.-]
D NE2260 hslV; Multispecific proteasome proteases K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D NE1331 ggt2; Gamma-glutamyltranspeptidase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D NE1979 Peptidase family U32 K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D NE2195 pmbA; Putative modulator of DNA gyrase K03592 pmbA; PmbA protein
D NE1326 tldD; Putative modulator of DNA gyrase K03568 tldD; TldD protein
D NE1284 Band 7 protein K04087 hflC; modulator of FtsH protease HflC
D NE1285 Band 7 protein K04088 hflK; modulator of FtsH protease HflK
C 01003 Glycosyltransferases [BR:neu01003]
D NE1652 possible dolichol monophosphate mannose synthase K00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83]
D NE2264 glgA1; Glycosyl transferases group 1 K00703 glgA; starch synthase [EC:2.4.1.21]
D NE1628 mtgA; Glycosyltransferase family 51 K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D NE2317 mrcA; mrcA; penicillin-binding 1 (peptidoglycan synthetase) transmembrane protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D NE2438 mdoH; Glycosyl transferase, family 2 K03669 mdoH; membrane glycosyltransferase [EC:2.4.1.-]
D NE1214 ss2; Sucrose synthase:Glycosyl transferases group 1 K00695 SUS; sucrose synthase [EC:2.4.1.13]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:neu01005]
D NE2164 lpxK; Tetraacyldisaccharide-1-P 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D NE1686 Cytidylyltransferase (CMP-NeuAc synthetase) K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D NE1682 possible transmembrane protein K02847 waaL; O-antigen ligase [EC:2.4.99.26]
D NE1185 putative phosphatase protein K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D NE0501 Bacterial sugar transferase K13012 wbqP; O-antigen biosynthesis protein WbqP
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:neu01011]
D NE1852 murA; EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D NE0993 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D NE0992 murC; murC; UDP-N-acetylmuramate--alanine ligase protein K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D NE0989 murD; UDP-N-acetylmuramoylalanine-D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D NE0986 murE; murE; UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D NE0994 ddlB; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D NE1417 dadX; Alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D NE0449 murI; Aspartate and glutamate racemases:Glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D NE0988 mraY; mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D NE0991 murG; Glycosyltransferase family 28 K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D NE0039 bacA; Bacitracin resistance protein BacA K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D NE2405 mviN; Virulence factor MVIN-like K03980 murJ; putative peptidoglycan lipid II flippase
D NE2317 mrcA; mrcA; penicillin-binding 1 (peptidoglycan synthetase) transmembrane protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D NE2067 Penicillin binding protein transpeptidase domain K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D NE0985 ftsI; Penicillin binding protein transpeptidase domain K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D NE1485 dac; D-alanyl-D-alanine carboxypeptidase 1 (S11) family K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D NE0053 D-Ala-D-Ala carboxypeptidase 3 (S13) family K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D NE1628 mtgA; Glycosyltransferase family 51 K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D NE1659 conserved hypothetical protein K16291 erfK; L,D-transpeptidase ErfK/SrfK
D NE2573 ycbB; putative periplasmic protein K21470 ycbB; L,D-transpeptidase YcbB
D NE2357 NLP/P60 K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13]
D NE2364 NLP/P60 K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13]
D NE1615 slt; SLT domain K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D NE1510 putative membrane-bound lytic murein transglycosylase A transmembrane protein K08304 mltA; peptidoglycan lytic transglycosylase A [EC:4.2.2.29]
D NE1033 mltB2; putative membrane-bound lytic transglycosylase K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D NE2421 SLT domain:LysM motif K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
D NE1651 DUF175 K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D NE2065 putative rare lipoprotein A K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D NE0656 amiB; Cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D NE2182 ampD; N-acetylmuramoyl-L-alanine amidase (family 2) K03806 ampD; N-acetyl-anhydromuramoyl-L-alanine amidase [EC:3.5.1.28]
D NE1907 hypothetical protein K06078 lpp; murein lipoprotein
C 01004 Lipid biosynthesis proteins [BR:neu01004]
D NE1647 fabD; fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D NE1646 fabH; fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D NE1650 fabF1; Beta-ketoacyl synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D NE1648 fabG1; Short-chain dehydrogenase/reductase (SDR) superfamily K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D NE1708 fabZ; Bacterial thioester dehydrase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D NE2205 Short-chain dehydrogenase/reductase (SDR) superfamily K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D NE1455 GDSL lipolytic enzyme K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D NE1467 Fatty acid desaturase, type 2:Fatty acid desaturase, type 1 K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D NE2341 AMP-dependent synthetase and ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D NE2349 ydiD; AMP-dependent synthetase and ligase K12507 fadK; acyl-CoA synthetase [EC:6.2.1.-]
D NE1549 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D NE2235 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D NE1658 AMP-dependent synthetase and ligase K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-]
D NE1645 plsX; Fatty acid synthesis plsX protein K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D NE0224 DUF205 K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D NE1184 nlaB; Phospholipid and glycerol acyltransferase (from 'motifs_6.msf') K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D NE0612 plsC; Phospholipid and glycerol acyltransferase (from 'motifs_6.msf') K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins [BR:neu01008]
C 01006 Prenyltransferases [BR:neu01006]
D NE1160 ispA; Polyprenyl synthetase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D NE1915 ispB; Polyprenyl synthetase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D NE1714 Undecaprenyl pyrophosphate synthetase family K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D NE1958 fdfT; Squalene and phytoene synthases K10208 crtM; 4,4'-diapophytoene synthase [EC:2.5.1.96]
D NE1976 miaA; tRNA isopentenyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D NE1838 ubiA; UbiA prenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D NE1010 ctaB; UbiA prenyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
C 01007 Amino acid related enzymes [BR:neu01007]
D NE1624 gltX; gltX; glutamate-tRNA synthetase (catalytic subunit)(sye protein) K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D NE2356 glnS; Glutamyl-tRNA synthetase:Glutaminyl-tRNA synthetase GlnS K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D NE2363 glnS; Glutamyl-tRNA synthetase:Glutaminyl-tRNA synthetase GlnS K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D NE1431 t-RNA synthetase, class Ib K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D NE1727 trpS; t-RNA synthetase, class Ib:Tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D NE0043 cysS; Cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D NE0364 argS; Arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D NE0625 metG1; Methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D NE1149 ileS; t-RNA synthetase, class Ia:Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D NE0444 valS; probable valyl-tRNA synthetase (valine--tRNA ligase) protein K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D NE1139 leuS; t-RNA synthetase, class Ia:Leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D NE2355 lysS; lysS; putative lysyl-tRNA synthetase protein K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D NE2252 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D NE0150 hisS; hisS; histidine-tRNA synthetase protein K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D NE1187 glyQ; Glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D NE1186 glyS; Glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D NE0180 serS; tRNA synthetases, class-II (G, H, P and S):Seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D NE1317 proS; Prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D NE0958 thrS; thrS; threonyl-tRNA synthetase (threonine--tRNA ligase) protein K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D NE1930 alaS; Alanyl-tRNA synthetase:DHHA1 domain K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D NE0954 pheS; pheS; phenylalanyl-tRNA synthetase, alpha-subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D NE0953 pheT; pheT; phenylalanyl-tRNA synthetase beta chain protein K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D NE0786 aatA; Aminotransferases class-I K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D NE2368 Aspartate aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D NE2463 dapC; Aminotransferases class-I K14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17]
D NE0336 hisC2; Aminotransferases class-I K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D NE0647 hisC1; Aminotransferases class-I K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D NE2299 bioF; Aminotransferases class-I K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D NE1655 Aminotransferases class-I K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D NE1388 rkpG; Aminotransferases class-I K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D NE2400 PatB; Aminotransferases class-I K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D NE0142 putative aminotransferase protein K00819 rocD; ornithine--oxo-acid transaminase [EC:2.6.1.13]
D NE1439 argD; argD; acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D NE0026 bioA; Aminotransferase class-III pyridoxal-phosphate K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D NE1423 hemL; hemL; glutamate-1-semialdehyde 2,1-aminomutase protein K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D NE1486 Aminotransferases class-IV K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D NE1893 ilvE; Aminotransferases class-IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D NE0034 Aminotransferase class-V K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D NE0333 serC; Aminotransferase class-V:Phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D NE2167 DegT/DnrJ/EryC1/StrS family K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:neu00194]
D NE1720 Cytochrome c, class I K08906 petJ; cytochrome c6
D NE0207 atpC; ATP synthase, Delta/Epsilon chain K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D NE0206 atpD; FoF1-type ATP synthase beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D NE0205 atpG; ATP synthase gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D NE0204 atpA; FoF1-type ATP synthase alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D NE0203 atpH; ATP synthase, delta (OSCP) subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D NE0202 atpF; ATP synthase B/B' CF(0) K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D NE0201 atpE; ATP synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D NE0200 atpB; ATP synthase A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D NE0199 hypothetical protein K02116 atpI; ATP synthase protein I
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:neu03000]
D NE1435 metR; Bacterial regulatory protein, LysR family K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D NE0854 cysB; Bacterial regulatory protein, LysR family K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D NE0572 cbl; Bacterial regulatory protein, LysR family K13635 cbl; LysR family transcriptional regulator, cys regulon transcriptional activator
D NE1922 cbbR; Bacterial regulatory protein, LysR family K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator
D NE1114 Bacterial regulatory proteins, TetR family K18129 mexZ; TetR/AcrR family transcriptional regulator, mexXY operon repressor
D NE0843 merR; Bacterial regulatory proteins, MerR family K08365 merR; MerR family transcriptional regulator, mercuric resistance operon regulatory protein
D NE0838 merD; Bacterial regulatory proteins, MerR family K19057 merD; MerR family transcriptional regulator, mercuric resistance operon regulatory protein
D NE0616 fur1; Leucine-rich repeat:Ferric uptake regulator family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D NE1722 Ferric uptake regulator family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D NE0730 Ferric uptake regulator family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D NE1296 Cyclic nucleotide-binding domain:cAMP-dependent protein kinase K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D NE1719 putative anaerobic transcriptional regulatory protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D NE1452 Uncharacterized protein family UPF0074 K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D NE0928 yhdE; Uncharacterized protein family UPF0074 K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D NE2460 birA; birA_ligase: biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D NE0875 fis; probable factor-for-inversion-stimulation transcription regulator protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D NE1311 Helix-turn-helix motif K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D NE1587 Helix-turn-helix motif K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D NE0189 Helix-turn-helix motif K07726 K07726; putative transcriptional regulator
D NE0475 Helix-turn-helix protein, CopG family K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
D NE0913 BolA-like protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D NE2473 spoOJ; ParB-like nuclease domain:ParB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D NE0468 rfaH; putative transcriptional activator K05785 rfaH; transcriptional antiterminator RfaH
D NE1477 hrcA; Negative regulator of class I heat shock protein K03705 hrcA; heat-inducible transcriptional repressor
D NE2130 rnk; Prokaryotic transcription elongation factor GreA/GreB K06140 rnk; regulator of nucleoside diphosphate kinase
D NE1666 pyrR; Phosphoribosyl transferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D NE1668 DUF179 K07735 algH; putative transcriptional regulator
D NE0455 Prokaryotic dksA/traR C4-type zinc finger K06204 dksA; RNA polymerase-binding transcription factor
D NE1432 DUF193 K07738 nrdR; transcriptional repressor NrdR
D NE0982 Domain of unknown function UPF0040 K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:neu03021]
D NE0426 rpoA; Bacterial RNA polymerase, alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D NE2046 rpoB; RNA polymerases beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D NE2045 rpoC; RNA polymerase, alpha subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D NE2255 rpoZ; RNA polymerase omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D NE0229 rpoD; DNA-dependent RNA polymerase sigma subunits (sigma70/32) K03086 rpoD; RNA polymerase primary sigma factor
D NE2331 rpoE1; Sigma factor, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D NE0917 probable RNA polymerase sigma factor transcription regulator K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D NE1101 Sigma factor, ECF subfamily K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D NE1079 Sigma factor, ECF subfamily K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D NE0128 probable sigma-70 factor, ECF subfamily K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D NE0980 putative sigma-70 factor, ECF subfamily K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D NE1071 probable sigma-70 factor, ECF subfamily K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D NE1086 probable sigma-70 factor, ECF subfamily K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D NE1099 Sigma factor, ECF subfamily K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D NE0533 putative sigma-70 factor, ECF subfamily K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D NE2486 Sigma factor, ECF subfamily K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D NE1096 Sigma factor, ECF subfamily K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D NE2435 fecI; Probable fecI Specialized sigma subunits of RNA polymerase K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D NE1617 Sigma factor, ECF subfamily K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D NE1217 putative sigma-70 factor, ECF subfamily K23514 fecI; RNA polymerase sigma-19 factor, ECF subfamily
D NE0584 rpoH; Sigma-70 factor family K03089 rpoH; RNA polymerase sigma-32 factor
D NE0062 rpoN1; Sigma-54 factor family K03092 rpoN; RNA polymerase sigma-54 factor
D NE2491 fliA; Sigma-70 factor family K02405 fliA; RNA polymerase sigma factor FliA
D NE0760 nusA; S1 RNA binding domain:KH domain:Type 1 KH domain K02600 nusA; transcription termination/antitermination protein NusA
D NE2558 nusB; Antitermination protein NusB K03625 nusB; transcription antitermination protein NusB
D NE2051 nusG; nusG; Bacterial transcription antitermination K02601 nusG; transcription termination/antitermination protein NusG
D NE0812 sspA; putative sspA; transcription modulator protein K03599 sspA; stringent starvation protein A
D NE0813 sspB; putative stringent starvation protein B K03600 sspB; stringent starvation protein B
D NE2330 hypothetical protein K03597 rseA; sigma-E factor negative regulatory protein RseA
D NE0455 Prokaryotic dksA/traR C4-type zinc finger K06204 dksA; RNA polymerase-binding transcription factor
D NE1660 greA; Prokaryotic transcription elongation factor GreA/GreB K03624 greA; transcription elongation factor GreA
D NE1848 greB; Prokaryotic transcription elongation factor GreA/GreB K04760 greB; transcription elongation factor GreB
D NE1035 rho; rho; Transcription termination factor K03628 rho; transcription termination factor Rho
D NE0186 conserved hypothetical protein K19000 rof; Rho-binding antiterminator
C 03019 Messenger RNA biogenesis [BR:neu03019]
D NE1457 Ribonucleases G and E K08300 rne; ribonuclease E [EC:3.1.26.12]
D NE0355 cafA; S1 RNA binding domain:Ribonuclease E and G K08301 rng; ribonuclease G [EC:3.1.26.-]
D NE2324 rnc; rnc; ribonuclease III (RNAse III) protein K03685 rnc; ribonuclease III [EC:3.1.26.3]
D NE0350 rnr; rnr; exoribonuclease RNAse R (vacB protein) K12573 rnr; ribonuclease R [EC:3.1.13.1]
D NE0075 Exonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D NE2040 rhlE; rhlE; ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D NE2564 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D NE0093 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D NE2520 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D NE1044 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D NE0172 pnp; pnp; polyribonucleotide nucleotidyltransferase protein K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D NE1035 rho; rho; Transcription termination factor K03628 rho; transcription termination factor Rho
D NE1949 dnaK; Heat shock protein hsp70, molecular chaperone K04043 dnaK; molecular chaperone DnaK
D NE0028 groEL; TCP-1 (Tailless complex polypeptide)/cpn60 chaparonin family K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D NE1287 hfq; putative host factor-i protein K03666 hfq; host factor-I protein
D NE0323 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D NE0069 pcnB; Poly A polymerase family K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D NE1316 NUDIX hydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D NE1849 conserved hypothetical protein K06958 rapZ; RNase adapter protein RapZ
D NE0833 hrpA; HrpA-like helicases K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
C 03041 Spliceosome
C 03011 Ribosome [BR:neu03011]
D NE1962 rpsA; Ribosomal protein S1:S1 RNA binding domain K02945 RP-S1; small subunit ribosomal protein S1
D NE1718 rpsB; Ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D NE0407 rpsC; Ribosomal protein S3:Type 2 KH domain:KH domain K02982 RP-S3; small subunit ribosomal protein S3
D NE0425 rpsD; Ribosomal protein S4:S4 domain K02986 RP-S4; small subunit ribosomal protein S4
D NE2143 rps4; Ribosomal protein S4:S4 domain K02986 RP-S4; small subunit ribosomal protein S4
D NE0418 rpsE; Ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D NE0198 rpsF; Ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D NE2054 rpsG; Ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D NE0415 rpsH; Ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D NE1483 rpsI; Ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D NE0400 rpsJ; Ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D NE0424 rpsK; Ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D NE2055 rpsL; Ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D NE0423 rpsM; Ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D NE0414 Ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D NE0173 rpsO; Ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D NE1671 rpsP; Ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D NE0410 Ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D NE0196 rpsR; Ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D NE0405 rpsS; Ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D NE2340 rpsT; Ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D NE0226 rpsU; Ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D NE2049 rplA; Ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D NE0404 Ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D NE0401 rplC; Ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D NE0402 rplD; Ribosomal protein L4/L1e K02926 RP-L4; large subunit ribosomal protein L4
D NE0413 Ribosomal protein L5:Mitochondrial ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D NE0416 rplF; Ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D NE0195 rplI; Ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D NE2048 rplJ; Ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D NE2050 rplK; Ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D NE2047 rplL; Ribosomal protein L7/L12 C-terminal domain K02935 RP-L7; large subunit ribosomal protein L7/L12
D NE1484 rplM; Ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D NE0411 Ribosomal protein L14b/L23e family K02874 RP-L14; large subunit ribosomal protein L14
D NE0420 Ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D NE0408 rplP; Ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D NE0427 Ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D NE0417 rplR; Ribosomal protein L18P/L5E:Ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D NE1674 rplS; Ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D NE0955 rplT; Ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D NE1293 rplU; Ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D NE0406 rplV; Ribosomal protein L22p / L17e K02890 RP-L22; large subunit ribosomal protein L22
D NE0403 rplW; Ribosomal L23 protein K02892 RP-L23; large subunit ribosomal protein L23
D NE0412 rplX; Ribosomal protein L24/bacterial NUSG:Ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D NE1292 rpmA; Ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D NE1465 rpmB; Ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D NE0409 rpmC; Ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D NE0419 rpmD; Ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D NE1036 rpmE; Ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D NE1644 rpmF; probable 50S ribosomal subunit protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D NE1466 rpmG; Ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D NE0390 rpmH; Ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D NE0956 rpmI; Ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D NE1825 rplY; Ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D RNA_44 5S_rRNA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RNA_45 16S_rRNA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RNA_46 23S_rRNA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RNA_42 rrnA; rRNA operon K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:neu03009]
D NE2324 rnc; rnc; ribonuclease III (RNAse III) protein K03685 rnc; ribonuclease III [EC:3.1.26.3]
D NE0075 Exonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D NE2323 era; Type 2 KH domain K03595 era; GTPase
D NE1291 GTP1/OBG family K03979 obgE; GTPase [EC:3.6.5.-]
D NE0455 Prokaryotic dksA/traR C4-type zinc finger K06204 dksA; RNA polymerase-binding transcription factor
D NE0760 nusA; S1 RNA binding domain:KH domain:Type 1 KH domain K02600 nusA; transcription termination/antitermination protein NusA
D NE2558 nusB; Antitermination protein NusB K03625 nusB; transcription antitermination protein NusB
D NE2051 nusG; nusG; Bacterial transcription antitermination K02601 nusG; transcription termination/antitermination protein NusG
D NE0884 ksgA; ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D NE1972 sun; rRNA methylase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D NE0085 SAM (and some other nucleotide) binding motif:NOL1/NOP2/sun f... K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D NE0969 possible N6-adenine-specific methylase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D NE0779 Conserved hypothetical protein 46 K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D NE2475 gidB; Glucose inhibited division protein K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D NE0983 Methyltransferase family K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D NE0721 yraL; possible methyltransferases K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D NE1572 Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D NE0351 putative tRNA/rRNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D NE0527 FtsJ cell division protein K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D NE0357 DUF163 K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D NE1174 Uncharacterized protein family UPF0020 K25137 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173]
D NE0145 Conserved hypothetical protein 48 K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D NE1857 ygcA; SAM (and some other nucleotide) binding motif K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D NE0435 possible pseudouridylate synthase family 1 K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D NE1456 rluC; rluC; ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D NE0505 rluD; rluD; ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D NE0005 possible 16S pseudouridylate synthase K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
D NE1399 GCN5-related N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D NE1672 RimM K02860 rimM; 16S rRNA processing protein RimM
D NE0911 yliG; Uncharacterized protein family UPF0004 K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D NE0654 prmA; prmA; putative ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D NE0436 adenine specific methylase, HemK family K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
D NE1457 Ribonucleases G and E K08300 rne; ribonuclease E [EC:3.1.26.12]
D NE0355 cafA; S1 RNA binding domain:Ribonuclease E and G K08301 rng; ribonuclease G [EC:3.1.26.-]
D NE1667 conserved hypothetical protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D NE0078 putative ATP-binding protein K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D NE0153 GTP-binding protein (HSR1-related):AAA ATPase superfamily K03977 engA; GTPase
D NE1286 GTP-binding protein HflX K03665 hflX; GTPase
D NE0946 SUA5/yciO/yrdC family:Sua5/YciO/YrdC/YwlC protein family K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D NE0368 spoT; spoT; bifunctional enzyme (p)ppgpp synthetase II and guanosine-3',5'-bisdiphosphate 3'-pyro K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D NE0762 rbfA; Ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D NE0759 DUF150 K09748 rimP; ribosome maturation factor RimP
D NE0358 Domain of unknown function DUF143:Iojap-related protein K09710 ybeB; ribosome-associated protein
D NE2333 Uncharacterized protein family UPF0054 K07042 ybeY; probable rRNA maturation factor
D NE0526 Uncharacterized protein family UPF0044 K07574 yhbY; RNA-binding protein
D NE2194 conserved hypothetical protein K09889 yjgA; ribosome-associated protein
D NE0061 Sigma 54 modulation protein / S30EA ribosomal protein K05808 hpf; ribosome hibernation promoting factor
D NE1823 GTP1/OBG family:Conserved hypothetical protein 92 K06942 ychF; ribosome-binding ATPase
D NE1643 conserved hypothetical protein K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:neu03016]
D NE1614 cca; Poly A polymerase family:HD domain K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D NE1624 gltX; gltX; glutamate-tRNA synthetase (catalytic subunit)(sye protein) K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D NE1317 proS; Prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D NE1149 ileS; t-RNA synthetase, class Ia:Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D NE1139 leuS; t-RNA synthetase, class Ia:Leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D NE0625 metG1; Methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D NE2356 glnS; Glutamyl-tRNA synthetase:Glutaminyl-tRNA synthetase GlnS K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D NE2363 glnS; Glutamyl-tRNA synthetase:Glutaminyl-tRNA synthetase GlnS K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D NE0364 argS; Arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D NE2355 lysS; lysS; putative lysyl-tRNA synthetase protein K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D NE2252 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D NE1930 alaS; Alanyl-tRNA synthetase:DHHA1 domain K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D NE0958 thrS; thrS; threonyl-tRNA synthetase (threonine--tRNA ligase) protein K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D NE0180 serS; tRNA synthetases, class-II (G, H, P and S):Seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D NE0043 cysS; Cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D NE0444 valS; probable valyl-tRNA synthetase (valine--tRNA ligase) protein K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D NE0150 hisS; hisS; histidine-tRNA synthetase protein K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D NE0954 pheS; pheS; phenylalanyl-tRNA synthetase, alpha-subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D NE0953 pheT; pheT; phenylalanyl-tRNA synthetase beta chain protein K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D NE1431 t-RNA synthetase, class Ib K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D NE1727 trpS; t-RNA synthetase, class Ib:Tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D NE0640 hitA; HIT (Histidine triad) family K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D NE0283 possible S-adenosylmethionine-dependent methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D NE0691 tRNA pseudouridine synthase K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D NE0763 tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D NE0174 Aminotransferase class-V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D NE0946 SUA5/yciO/yrdC family:Sua5/YciO/YrdC/YwlC protein family K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D NE1976 miaA; tRNA isopentenyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D NE0386 thdF; GTP-binding protein (HSR1-related):tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D NE2476 gidA; gidA; glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D NE0733 selD; AIR synthase related protein:Selenide water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D NE0389 rnpA; Bacterial ribonuclease P protein K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D RNA_47 rnpB; RNA component of RNaseP K01978 rnpB; M1 RNA
D NE0276 rph; 3' exoribonuclease family K00989 rph; ribonuclease PH [EC:2.7.7.56]
D NE1625 Ribonuclease II domain K01147 rnb; exoribonuclease II [EC:3.1.13.1]
D NE1401 ligT; putative 2'-5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
D NE1806 ATPase components of ABC transporters with duplicated ATPase domains K06020 ettA; energy-dependent translational throttle protein EttA
D NE1187 glyQ; Glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D NE1186 glyS; Glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D NE0437 Cytidine and deoxycytidylate deaminase zinc-binding region K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D NE0874 Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D NE2335 Fe-S oxidoreductases family 1 K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D NE1953 rRNA_methyl_1: RNA methyltransferase, TrmHfamily, group 1 K02533 lasT; tRNA/rRNA methyltransferase [EC:2.1.1.-]
D NE1673 trmB; tRNA (guanine-N1-)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D NE2302 rRNA_methyl_2: RNA methyltransferase, TrmH family, group 2 K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D NE0775 tRNA/rRNA methyltransferase (SpoU) K03437 spoU; RNA methyltransferase, TrmH family
D NE0963 trmU; trmU; tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase protein K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D NE1490 Uncharacterized protein family UPF0021 K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D NE1407 Uncharacterized protein family UPF0033 K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D NE1451 Hypothetical hesB/yadR/yfhF family K13628 iscA; iron-sulfur cluster assembly protein
D NE1514 Glycine cleavage T-protein (aminomethyl transferase) K06980 ygfZ; tRNA-modifying protein YgfZ
D NE1140 tsaA; Queuosine biosynthesis protein K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D NE0222 ExsB protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D NE1517 6-pyruvoyl tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D NE0221 Radical activating enzymes K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D NE2285 conserved hypothetical protein K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D NE1881 DUF208 K09765 queH; epoxyqueuosine reductase [EC:1.17.99.6]
D NE0732 ybbB; Rhodanese/cdc25 fold K06917 selU; tRNA 2-selenouridine synthase [EC:2.9.1.3]
D NE1141 tgt; tgt; tRNA-guanine transglycosylase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D NE1022 conserved hypothetical protein K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D NE1400 yeaZ; Glycoprotease, (M22) metallo-protease family K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D NE0225 gcp; Glycoprotease, (M22) metallo-protease family K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D NE0657 Uncharacterised P-loop hydrolase UPF0079 K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D NE0350 rnr; rnr; exoribonuclease RNAse R (vacB protein) K12573 rnr; ribonuclease R [EC:3.1.13.1]
D NE0172 pnp; pnp; polyribonucleotide nucleotidyltransferase protein K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D NE0498 ntrR2; PIN (PilT N terminus) domain K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
D NE0479 PIN (PilT N terminus) domain K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
D NE0287 vapC; PIN (PilT N terminus) domain K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
C 03012 Translation factors [BR:neu03012]
D NE0761 putative translation initiation factor protein K02519 infB; translation initiation factor IF-2
D NE0957 infC; Initiation factor 3 K02520 infC; translation initiation factor IF-3
D NE0477 ATPase components of ABC transporters with duplicated ATPase domains K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D NE1717 tsf; Ubiquitin-associated domain:Elongation factor Ts K02357 tsf; elongation factor Ts
D NE0399 tuf2; GTPases-translation elongation factors and sulfate adenylate transferase subunit 1 K02358 tuf; elongation factor Tu
D NE2052 tuf2; GTPases-translation elongation factors and sulfate adenylate transferase subunit 1 K02358 tuf; elongation factor Tu
D NE2053 fusA1; Translation elongation and release factors (GTPases) K02355 fusA; elongation factor G
D NE1913 prfA; prfA: peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D NE1715 rrf; Ribosome recycling factor K02838 frr; ribosome recycling factor
D NE1912 hemK_fam: modification methylase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D NE1824 pth; Peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D NE0422 infA; S1 RNA binding domain:Translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D NE0897 efp; Elongation factor P (EF-P) K02356 efp; elongation factor P
D NE1229 prfB; Peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
D NE2481 prfC; prfC; peptide chain release factor RF-3 K02837 prfC; peptide chain release factor 3
C 03110 Chaperones and folding catalysts [BR:neu03110]
D NE1733 clpA; ClpA, ATP dependent protease, chaperonin K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA
D NE2402 clpB; ClpB ATPase dependent protease, chaperonin K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D NE0032 clpX; clpX; ATP-dependent protease (ATP-binding specificity subunit) K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D NE2261 hslU; hslU; heat shock protein chaperone K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D NE1762 hptG; probable hptG; chaperone (heat shock protein htpg) K04079 HSP90A; molecular chaperone HtpG
D NE1949 dnaK; Heat shock protein hsp70, molecular chaperone K04043 dnaK; molecular chaperone DnaK
D NE0028 groEL; TCP-1 (Tailless complex polypeptide)/cpn60 chaparonin family K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D NE1948 dnaJ; DnaJ molecular chaperone K03686 dnaJ; molecular chaperone DnaJ
D NE1155 DnaJ N-terminal domain:DnaJ C terminal domain K05516 cbpA; curved DNA-binding protein
D NE1950 grpE; GrpE protein, molecular chaperone K03687 GRPE; molecular chaperone GrpE
D NE2074 Heat shock hsp20 (alpha crystallin) proteins family K13993 HSP20; HSP20 family protein
D NE2565 S4 domain K04762 hslR; ribosome-associated heat shock protein Hsp15
D NE0027 groES; Chaperonins cpn10 (10 Kd subunit) K04078 groES; chaperonin GroES
D NE2329 mucD; mucD; serine protease MucD precursor K04771 degP; serine protease Do [EC:3.4.21.107]
D NE0528 hflB; hflB; ATP-dependent zinc metallopeptidase (cell division ftsh) transmembrane protein K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D NE0906 ftsH; ftsH; cell division protein K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D NE0200 atpB; ATP synthase A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D NE2210 secB; Bacterial protein export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D NE0512 conserved hypothetical protein K06006 cpxP; periplasmic protein CpxP/Spy
D NE0042 ppiA; Cyclophilin-type peptidyl-prolyl cis-trans isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D NE0041 ppiB; Cyclophilin-type peptidyl-prolyl cis-trans isomerase K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D NE2206 ppiD; PpiC-type peptidyl-prolyl cis-trans isomerase K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D NE0079 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase (PPIase) K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]
D NE1706 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase (PPIase) K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D NE1418 PpiC-type peptidyl-prolyl cis-trans isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
D NE0882 surA; PpiC-type peptidyl-prolyl cis-trans isomerase K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D NE1034 trxA; Thioredoxin K03671 TXN; thioredoxin
D NE2211 grxC; Glutaredoxin K03676 grxC; glutaredoxin 3
D NE1911 Glutaredoxin-related protein K07390 grxD; monothiol glutaredoxin
D NE0366 dsbA; Thioredoxin:DSBA oxidoreductase K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D NE1175 dsbB; Disulfide bond formation protein DsbB K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9]
D NE1511 dsbC; hypothetical protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D NE0516 hypothetical protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D NE2389 dsbD; Thioredoxin:Cytochrome c biogenesis protein transmembrane region K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16]
D NE0769 ccmG; Periplasmic protein thiol:disulfide oxidoreductase DsbE K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE
C 04131 Membrane trafficking [BR:neu04131]
D NE0144 ndk; Nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D NE2493 Uncharacterized protein family UPF0016 K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family
D NE0327 cbbG; Glyceraldehyde 3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D NE1780 Phosphoglycerate mutase family K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D NE0178 gpmA; Phosphoglycerate mutase family K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D NE0325 pykA1; Pyruvate kinase family K00873 PK; pyruvate kinase [EC:2.7.1.40]
D NE1762 hptG; probable hptG; chaperone (heat shock protein htpg) K04079 HSP90A; molecular chaperone HtpG
C 04121 Ubiquitin system [BR:neu04121]
C 03051 Proteasome [BR:neu03051]
D NE1762 hptG; probable hptG; chaperone (heat shock protein htpg) K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:neu03032]
D NE0140 rnhA; probable ribonuclease hi protein K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D NE2207 hupB; Bacterial histone-like DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D NE0952 ihfA; Bacterial histone-like DNA-binding protein K04764 ihfA; integration host factor subunit alpha
D NE1961 ihfB; Bacterial histone-like DNA-binding protein K05788 ihfB; integration host factor subunit beta
D NE0001 dnaA; dnaA; chromosomal replication initiator protein K02313 dnaA; chromosomal replication initiator protein
D NE0194 dnaB; dnaB; replicative DNA helicase protein K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D NE0228 CHC2 zinc finger K02316 dnaG; DNA primase [EC:2.7.7.101]
D NE2453 ssb; Single-strand binding protein family K03111 ssb; single-strand DNA-binding protein
D NE1978 dnaE1; dnaE1; DNA polymerase III (alpha chain) protein K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D NE0002 dnaN; DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D NE0442 holC; putative DNA polymerase III (chi subunit) protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D NE1137 holA; putative DNA polymerase III (delta subunit) protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D NE2180 holB; putative DNA polymerase III (delta' subunit) protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D NE0141 dnaQ; probable DNA polymerase III (epsilon chain) protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D NE0433 dnaX; dnaX; DNA polymerase III (subunits tau and gamma) protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D NE1707 rnhB; Ribonuclease HII and HIII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D NE1468 polA; polA; DNA polymerase I protein K02335 polA; DNA polymerase I [EC:2.7.7.7]
D NE1753 lig; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D NE0098 conserved hypothetical protein K10763 hda; DnaA-homolog protein
D NE0332 gyrA; DNA gyrase/topoisomerase IV, subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D NE0003 gyrB; DNA gyrase, subunit B:DNA topoisomerase II gyrB K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D NE1966 topB; topB; DNA topoisomerase III protein K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:neu03036]
D NE2324 rnc; rnc; ribonuclease III (RNAse III) protein K03685 rnc; ribonuclease III [EC:3.1.26.3]
D NE1339 H-NS histone family K03746 hns; DNA-binding protein H-NS
D NE2207 hupB; Bacterial histone-like DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D NE0952 ihfA; Bacterial histone-like DNA-binding protein K04764 ihfA; integration host factor subunit alpha
D NE1961 ihfB; Bacterial histone-like DNA-binding protein K05788 ihfB; integration host factor subunit beta
D NE1155 DnaJ N-terminal domain:DnaJ C terminal domain K05516 cbpA; curved DNA-binding protein
D NE1156 Bacterial regulatory proteins, MerR family K18997 cbpM; chaperone modulatory protein CbpM
D NE0001 dnaA; dnaA; chromosomal replication initiator protein K02313 dnaA; chromosomal replication initiator protein
D NE0875 fis; probable factor-for-inversion-stimulation transcription regulator protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D NE1287 hfq; putative host factor-i protein K03666 hfq; host factor-I protein
D NE2284 Chromosome segregation ATPases K03529 smc; chromosome segregation protein
D NE1728 DUF173 K05896 scpA; segregation and condensation protein A
D NE1729 conserved hypothetical protein K06024 scpB; segregation and condensation protein B
D NE0996 ftsA; Cell division protein FtsA K03590 ftsA; cell division protein FtsA
D NE1043 putative transmembrane protein K05589 ftsB; cell division protein FtsB
D NE1414 ftsE; Uncharacterized ABC-type transport system ATPase component/cell division protein K09812 ftsE; cell division transport system ATP-binding protein
D NE0985 ftsI; Penicillin binding protein transpeptidase domain K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D NE1051 ftsK; FtsK/SpoIIIE family:AAA ATPase superfamily K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D NE0984 ftsL; putative cell division ftsL transmembrane protein K03586 ftsL; cell division protein FtsL
D NE0995 ftsQ; putative cell division transmembrane protein K03589 ftsQ; cell division protein FtsQ
D NE0990 ftsW; Cell cycle proteins K03588 ftsW; cell division protein FtsW
D NE1413 ftsX; DUF214 K09811 ftsX; cell division transport system permease protein
D NE0997 ftsZ; Cell division protein FtsZ:Tubulin/FtsZ family K03531 ftsZ; cell division protein FtsZ
D NE1890 conserved hypothetical protein K09888 zapA; cell division protein ZapA
D NE0599 conserved hypothetical protein K18778 zapD; cell division protein ZapD
D NE0656 amiB; Cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D NE0169 acrA; HlyD family secretion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D NE1831 minC; putative cell division inhibitor MinC K03610 minC; septum site-determining protein MinC
D NE1830 minD; ParA family ATPase K03609 minD; septum site-determining protein MinD
D NE1829 minE; cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor
D NE2070 mreB; Heat shock protein hsp70:Cell shape determining protein MreB/Mrl K03569 mreB; rod shape-determining protein MreB and related proteins
D NE2069 mreC; putative rod shape-determining MreC transmembrane protein K03570 mreC; rod shape-determining protein MreC
D NE2068 mreD; possible rod shape-determining MreD transmembrane protein K03571 mreD; rod shape-determining protein MreD
D NE2066 mdrB; Cell cycle proteins K05837 rodA; rod shape determining protein RodA
D NE2474 parA2; ParA family ATPase K03496 parA; chromosome partitioning protein
D NE1495 soj; ParA family ATPase K03496 parA; chromosome partitioning protein
D NE2473 spoOJ; ParB-like nuclease domain:ParB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D NE2476 gidA; gidA; glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D NE2475 gidB; Glucose inhibited division protein K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D NE0338 sss; Phage integrase:Phage integrase N-terminal SAM-like domain K03733 xerC; integrase/recombinase XerC
D NE1458 xerD; Phage integrase:Phage integrase N-terminal SAM-like domain K04763 xerD; integrase/recombinase XerD
D NE0624 mrp; Domain of unknown function DUF59 K03593 mrp; ATP-binding protein involved in chromosome partitioning
D NE2119 conserved hypothetical protein K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D NE2458 putative GTP-binding protein K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:neu03400]
D NE0885 ogt; Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D NE0056 mutY; HhH-GPD K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D NE2223 nth; HhH-GPD:Iron-sulfur cluster loop (FCL) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D NE2215 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D NE1462 dut; dUTPase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D NE1560 conserved hypothetical protein K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
D NE0931 conserved hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D NE1398 putative DNA polymerase-related protein, bacteriophage-type K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D NE0981 HhH-GPD K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D NE2552 mutM; Formamidopyrimidine-DNA glycolase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D NE2192 xthA2; Exodeoxyribonuclease III:Exodeoxyribonuclease III xth K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D NE0023 xthA1; Exodeoxyribonuclease III:Exodeoxyribonuclease III xth K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D NE0010 recJ; recJ: single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D NE1753 lig; NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D NE1468 polA; polA; DNA polymerase I protein K02335 polA; DNA polymerase I [EC:2.7.7.7]
D NE2455 uvrA1; ABC transporter:Excinuclease ABC A subunit K03701 uvrA; excinuclease ABC subunit A
D NE0785 uvrB; Helicase subunit of the DNA excision repair complex K03702 uvrB; excinuclease ABC subunit B
D NE0933 uvrC; uvrC Nuclease subunit of the excinuclease complex K03703 uvrC; excinuclease ABC subunit C
D NE1473 uvrD; UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D NE2046 rpoB; RNA polymerases beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D NE2045 rpoC; RNA polymerase, alpha subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D NE0426 rpoA; Bacterial RNA polymerase, alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D NE2255 rpoZ; RNA polymerase omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D NE0008 mfd; mfd: transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D NE1705 mutS; mutS; DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS
D NE0830 DNA mismatch repair protein MutS family, C-terminal domain K03555 mutS; DNA mismatch repair protein MutS
D NE1742 mutL; mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL
D NE0671 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D NE1172 xseA; xseA; exodeoxyribonuclease vII large subunit protein K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D NE1159 xseB; Exonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D NE1978 dnaE1; dnaE1; DNA polymerase III (alpha chain) protein K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D NE0002 dnaN; DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D NE0442 holC; putative DNA polymerase III (chi subunit) protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D NE1137 holA; putative DNA polymerase III (delta subunit) protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D NE2180 holB; putative DNA polymerase III (delta' subunit) protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D NE0141 dnaQ; probable DNA polymerase III (epsilon chain) protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D NE0433 dnaX; dnaX; DNA polymerase III (subunits tau and gamma) protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D NE2453 ssb; Single-strand binding protein family K03111 ssb; single-strand DNA-binding protein
D NE1932 recA; RecA bacterial DNA recombination protein:AAA ATPase superfamily K03553 recA; recombination protein RecA
D NE0212 ruvA; probable Holliday junction DNA helicase subunit K03550 ruvA; holliday junction DNA helicase RuvA
D NE0213 ruvB; ruvB; holliday junction DNA helicase protein K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D NE0211 ruvC; Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D NE1505 priA; probable priA; primosomal protein N' (replication factor Y) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D NE0197 conserved hypothetical protein K02686 priB; primosomal replication protein N
D NE1392 sbcC; ATP/GTP-binding site motif A (P-loop):ABC transporter K03546 sbcC; DNA repair protein SbcC/Rad50
D NE1390 sbcD; Serine/threonine specific protein phosphatase:Exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11
D NE1808 radA; sms: DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D NE1850 recG; RecG-like helicases K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D NE2525 possible ATP-dependent DNA helicase RecG-related protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D NE0383 conserved hypothetical protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D NE1479 recN; ABC transporter:DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D NE0507 rdgC; putative recombination associated protein rdgC K03554 rdgC; recombination associated protein RdgC
D NE0111 Protein of unknown function DUF48 K15342 cas1; CRISP-associated protein Cas1
D NE0844 Protein of unknown function DUF48 K15342 cas1; CRISP-associated protein Cas1
D NE1263 conserved hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
D NE0332 gyrA; DNA gyrase/topoisomerase IV, subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D NE0003 gyrB; DNA gyrase, subunit B:DNA topoisomerase II gyrB K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D NE2207 hupB; Bacterial histone-like DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D NE0875 fis; probable factor-for-inversion-stimulation transcription regulator protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D NE0952 ihfA; Bacterial histone-like DNA-binding protein K04764 ihfA; integration host factor subunit alpha
D NE1961 ihfB; Bacterial histone-like DNA-binding protein K05788 ihfB; integration host factor subunit beta
D NE2564 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D NE0093 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D NE2520 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D NE1339 H-NS histone family K03746 hns; DNA-binding protein H-NS
D NE1219 UMUC family (DNA-repair) K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D NE1931 recX; RecX regulatory protein K03565 recX; regulatory protein
D NE0880 probable ATP-dependent DNA helicase-related protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D NE2423 nrdA; Ribonucleotide reductase large subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D NE2422 nrdB; Ribonucleotide reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:neu03029]
D NE0810 Cytochrome b/b6 K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D NE0761 putative translation initiation factor protein K02519 infB; translation initiation factor IF-2
D NE0957 infC; Initiation factor 3 K02520 infC; translation initiation factor IF-3
D NE1717 tsf; Ubiquitin-associated domain:Elongation factor Ts K02357 tsf; elongation factor Ts
D NE0399 tuf2; GTPases-translation elongation factors and sulfate adenylate transferase subunit 1 K02358 tuf; elongation factor Tu
D NE2052 tuf2; GTPases-translation elongation factors and sulfate adenylate transferase subunit 1 K02358 tuf; elongation factor Tu
D NE2053 fusA1; Translation elongation and release factors (GTPases) K02355 fusA; elongation factor G
D NE2323 era; Type 2 KH domain K03595 era; GTPase
D NE1431 t-RNA synthetase, class Ib K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D NE1139 leuS; t-RNA synthetase, class Ia:Leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D NE2252 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D NE0364 argS; Arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D NE2072 gatA; Amidase:Glutamyl-tRNA(Gln) amidotransferase A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D NE2073 gatB; gatB: glutamyl-tRNA(Gln) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D NE2071 gatC; Glu-tRNAGln amidotransferase C subunit K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D NE2453 ssb; Single-strand binding protein family K03111 ssb; single-strand DNA-binding protein
D NE1710 Bacterial surface antigen (D15) K07277 SAM50; outer membrane protein insertion porin family
D NE1949 dnaK; Heat shock protein hsp70, molecular chaperone K04043 dnaK; molecular chaperone DnaK
D NE1950 grpE; GrpE protein, molecular chaperone K03687 GRPE; molecular chaperone GrpE
D NE0028 groEL; TCP-1 (Tailless complex polypeptide)/cpn60 chaparonin family K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D NE0027 groES; Chaperonins cpn10 (10 Kd subunit) K04078 groES; chaperonin GroES
D NE1948 dnaJ; DnaJ molecular chaperone K03686 dnaJ; molecular chaperone DnaJ
D NE0174 Aminotransferase class-V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D NE1911 Glutaredoxin-related protein K07390 grxD; monothiol glutaredoxin
D NE0624 mrp; Domain of unknown function DUF59 K03593 mrp; ATP-binding protein involved in chromosome partitioning
D NE1010 ctaB; UbiA prenyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D NE1015 ctaG; putative cytochrome C oxidase assembly transmembrane protein K02258 COX11; cytochrome c oxidase assembly protein subunit 11
D NE0431 Cytochrome oxidase assembly K02259 COX15; heme a synthase [EC:1.17.99.9]
D NE0387 60Kd inner membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D NE1012 SURF1 family K14998 SURF1; surfeit locus 1 family protein
D NE0682 SCO1/SenC K07152 SCO1; protein SCO1
D NE0509 SCO1; SCO1/SenC K07152 SCO1; protein SCO1
D NE1762 hptG; probable hptG; chaperone (heat shock protein htpg) K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:neu02000]
D NE0376 ABC transporter, fused permease and ATPase domains K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump
D NE0720 ABC transporter, fused permease and ATPase domains K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D NE0919 ABC transporter, fused permease and ATPase domains K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D NE1784 ABC transporter, fused permease and ATPase domains K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D NE2452 abcT3; ABC transporter, fused permease and ATPase domains K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D NE0159 ABC transporter, fused permease and ATPase domains K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D NE1613 ABC transporter, fused permease and ATPase domains K06148 ABCC-BAC; ATP-binding cassette, subfamily C, bacterial
D NE1081 probable ATP-binding/permease fusion ABC transporter K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D NE0734 abcZ; abcZ; ABC transporter ATP-binding protein K15738 uup; ABC transport system ATP-binding/permease protein
D NE0054 ABC transporter transmembrane region:ABC transporter K02021 ABC.MR; putative ABC transport system ATP-binding protein
D NE0582 sbp1; Prokaryotic sulfate-/thiosulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D NE0578 cysU; cysU; sulfate transport ABC transporter protein K02046 cysU; sulfate/thiosulfate transport system permease protein
D NE0577 cysW; cysW; sulfate transport ABC transporter protein K02047 cysW; sulfate/thiosulfate transport system permease protein
D NE0576 cysA; cysA; sulfate transport ATP-binding ABC transporter protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D NE1029 Bacterial extracellular solute-binding protein, family 1 K02012 afuA; iron(III) transport system substrate-binding protein
D NE1030 iron transport system permease protein K02011 afuB; iron(III) transport system permease protein
D NE1031 putative iron transport system ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D NE1873 potD; Bacterial extracellular solute-binding protein, family 1 K11069 potD; spermidine/putrescine transport system substrate-binding protein
D NE1872 potC; potC; putative spermidine/putrescine transport system permease protein K11070 potC; spermidine/putrescine transport system permease protein
D NE1871 potB; potB; putative spermidine/putrescine transport system permease protein K11071 potB; spermidine/putrescine transport system permease protein
D NE1870 potA; potA; putative spermidine/putrescine transport system ATP-binding protein K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D NE1197 conserved hypothetical protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D NE1736 putative transport system permease K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D NE0977 putative nitrate transport system permease protein K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D NE1196 putative ABC transporter, permease protein, cysTW family K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D NE1737 nrtD; nrtD; nitrate/nitrite transport system ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D NE0976 putative nitrate transport system ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D NE1195 ATPase component ABC-type nitrate transport system K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D NE2382 mce related protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D NE1955 mce related protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D NE0106 possible ABC transport permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D NE2383 Domain of unknown function DUF140 K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D NE0107 ATPase component Uncharacterized ABC-type transport system K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D NE2384 ATPase component Uncharacterized ABC-type transport system K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D NE1956 putative lipoprotein K18480 linN; cholesterol transport system auxiliary component
D NE2381 putative signal peptide protein K07323 mlaC; phospholipid transport system substrate-binding protein
D NE0331 putative periplasmic transport protein K07323 mlaC; phospholipid transport system substrate-binding protein
D NE2380 STAS domain K07122 mlaB; phospholipid transport system transporter-binding protein
D NE0531 Phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D NE0999 phosphate transport system permease protein K02037 pstC; phosphate transport system permease protein
D NE1000 Phosphate permease component of ATP-dependent phosphate uptake system K02038 pstA; phosphate transport system permease protein
D NE1001 pstB; pstB; phosphate transport system ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D NE1152 hbpA; Bacterial extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D NE1153 appB; appB; oligopeptide ABC transporter K02033 ABC.PE.P; peptide/nickel transport system permease protein
D NE2479 appC; oligopeptide ABC transporter K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D NE2480 dppF; ATPase component ABC-type dipeptide/oligopeptide/nickel transport system K02031 ddpD; peptide/nickel transport system ATP-binding protein
D NE1386 rkpT1; ABC 2 transport system integral membrane protein K09688 kpsM; capsular polysaccharide transport system permease protein
D NE1384 kpsE; Chain length determinant protein K10107 kpsE; capsular polysaccharide transport system permease protein
D NE1385 rkpS; ATPase component ABC-type polysaccharide/polyol phosphate transport system K09689 kpsT; capsular polysaccharide transport system ATP-binding protein [EC:7.6.2.12]
D NE0472 ABC 2 transport system integral membrane protein K09690 wzm; homopolymeric O-antigen transport system permease protein
D NE0483 wzt; probable ATPase component ABC-type polysaccharide/polyol phosphate transport system K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D NE0801 conserved hypothetical protein K07091 lptF; lipopolysaccharide export system permease protein
D NE0802 putative membrane protein K11720 lptG; lipopolysaccharide export system permease protein
D NE0063 ATPase component ABC-type (unclassified) transport system K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D NE2550 putative ABC-2 type transport system permease protein K25151 gldF; gliding motility-associated transport system permease protein
D NE2549 ATPase component ABC-type multidrug transport system K25152 gldA; gliding motility-associated transport system ATP-binding protein
D NE2551 conserved hypothetical protein K25153 gldG; gliding motility-associatede transport system auxiliary component
D NE1211 putative ABC transporter permease protein K25180 ybhR; drug efflux transport system permease protein
D NE1210 putative ABC transporter permease protein K25181 ybhS; drug efflux transport system permease protein
D NE1209 ATPase component ABC-type multidrug transport system K25182 ybhF; drug efflux transport system ATP-binding protein
D NE1208 HlyD family secretion protein K25183 ybhG; membrane fusion protein YbhG
D NE1057 DUF214 K09808 lolC_E; lipoprotein-releasing system permease protein
D NE1056 lolD; lolD; lipoprotein releasing system ATP-binding ABC transporter K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D NE0766 ccmC; ABC transporter, permease domain, ccmC, heme exporter K02195 ccmC; heme exporter protein C
D NE0765 ccmB; ABC transporter, permease domain, ccmB, heme exporter protein B K02194 ccmB; heme exporter protein B
D NE0764 ccmA; ccmA; ABC superfamily (atp_bind), heme exporter protein, cytochrome c-type biogenesis protein K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D NE1413 ftsX; DUF214 K09811 ftsX; cell division transport system permease protein
D NE1414 ftsE; Uncharacterized ABC-type transport system ATPase component/cell division protein K09812 ftsE; cell division transport system ATP-binding protein
D NE2378 ABC 2 transport system integral membrane protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D NE1118 putative ABC-2 type transport system permease protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D NE2379 ATPase component ABC-type multidrug transport system K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D NE1405 DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D NE1453 DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D NE1900 DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D NE2240 DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D NE0825 DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D NE0826 DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D NE2242 DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D NE1404 ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D NE1454 ABC transporter, ATPase subunit K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D NE1899 ATPase component ABC-type (unclassified) transport system K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D NE0827 ATPase component ABC-type (unclassified) transport system K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D NE2244 ATPase component ABC-type (unclassified) transport system K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D NE1449 ycf16; Iron-regulated ABC transporter ATPase subunit SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein
D NE0448 Rh50; Ammonium transporter family K06580 SLC42A; ammonium transporter Rh
D NE2347 General substrate transporters K03449 MFS.CP; MFS transporter, CP family, cyanate transporter
D NE0600 probable transmembrane protein K08227 lplT; MFS transporter, LPLT family, lysophospholipid transporter
D NE2191 ampG; putative transport transmembrane protein K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D NE2185 ptsI; PEP-utilizing enzyme K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D NE2184 ptsH; Phosphocarrier HPr protein K02784 ptsH; phosphocarrier protein HPr
D NE2183 conserved hypothetical protein K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191]
D NE0060 ptsN; Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
D NE1952 putative glutathione S-transferase protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D NE1908 possible glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D NE0812 sspA; putative sspA; transcription modulator protein K03599 sspA; stringent starvation protein A
D NE1018 Uncharacterized protein family UPF0005 K19416 yccA; modulator of FtsH protease
D NE0680 yrhG; Formate and nitrite transporters K21993 fdhC; formate transporter
D NE1947 yjeP; Uncharacterized protein family UPF0003 K22051 mscM; miniconductance mechanosensitive channel
D NE1633 mgtE; CBS domain:Divalent cation transporter K06213 mgtE; magnesium transporter
D NE1059 putative urea transporter K08717 utp; urea transporter
D NE0046 motA; probable chemotaxis (motility protein A) transmembrane K02556 motA; chemotaxis protein MotA
D NE0045 motB; Bacterial outer membrane protein K02557 motB; chemotaxis protein MotB
D NE1171 exbB2; MotA/TolQ/ExbB proton channel family K03561 exbB; biopolymer transport protein ExbB
D NE0353 exbB1; MotA/TolQ/ExbB proton channel family K03561 exbB; biopolymer transport protein ExbB
D NE0352 exbD1; Biopolymer transport protein ExbD/TolR K03559 exbD; biopolymer transport protein ExbD
D NE0869 exbD2; Biopolymer transport protein ExbD/TolR K03559 exbD; biopolymer transport protein ExbD
D NE0215 tolQ; MotA/TolQ/ExbB proton channel family K03562 tolQ; biopolymer transport protein TolQ
D NE0216 tolR; Biopolymer transport protein ExbD/TolR K03560 tolR; biopolymer transport protein TolR
D NE1704 CRCB protein K06199 crcB; fluoride exporter
D NE0842 merT; MerT mercuric transport protein K08363 merT; mercuric ion transport protein
D NE0841 merP; Mercury scavenger protein:Heavy-metal-associated domain K08364 merP; periplasmic mercuric ion binding protein
D NE0840 merC; putative mercury transport protein K19058 merC; mercuric ion transport protein
D NE2575 merE; mercury resistance protein MerE K19059 merE; mercuric ion transport protein
D NE2548 Bacterial outer membrane protein K03286 TC.OOP; OmpA-OmpF porin, OOP family
D NE0731 TonB-dependent receptor protein K16090 fiu; catecholate siderophore receptor
D NE2124 TonB-dependent receptor protein K16090 fiu; catecholate siderophore receptor
D NE0636 TonB-dependent receptor protein K16092 btuB; vitamin B12 transporter
D NE1190 fpvA; TonB-dependent receptor protein K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid
D NE1087 fpvA; TonB-dependent receptor protein K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid
D NE1540 TonB-dependent receptor protein K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D NE1089 TonB-dependent receptor protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D NE1097 TonB-dependent receptor protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D NE0535 TonB-dependent receptor protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D NE0549 TonB-dependent receptor protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D NE0559 TonB-dependent receptor protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D NE2433 TonB-dependent receptor protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D NE2165 TonB-dependent receptor protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D NE0758 TonB-dependent receptor protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D NE1536 TonB-dependent receptor protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D NE1721 hypothetical protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D NE0617 oprC; TonB-dependent receptor protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D NE0546 TonB-dependent receptor protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D NE2503 TonB-dependent receptor protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D NE0321 TonB-dependent receptor protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D NE1205 TonB-dependent receptor protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D NE1088 TonB-dependent receptor protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D NE1072 TonB-dependent receptor protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D NE0556 TonB-dependent receptor protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D NE0627 TonB-dependent receptor protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D NE0816 TonB-dependent receptor protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D NE0978 TonB-dependent receptor protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D NE1531 TonB-dependent receptor protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D NE1532 TonB-dependent receptor protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D NE2140 TonB-dependent receptor protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D NE1640 czcC; Outer membrane efflux protein K15725 czcC; outer membrane protein, heavy metal efflux system
D NE0373 Outer membrane efflux protein K15725 czcC; outer membrane protein, heavy metal efflux system
D NE0036 Outer membrane efflux protein K12340 tolC; outer membrane protein
D NE0160 Outer membrane efflux protein K12543 lapE; outer membrane protein, adhesin transport system
D NE1115 oprN; Outer membrane efflux protein K18300 oprN; outer membrane protein, multidrug efflux system
D NE1111 Outer membrane efflux protein K18139 oprM; outer membrane protein, multidrug efflux system
D NE0170 oprM; Outer membrane efflux protein K18139 oprM; outer membrane protein, multidrug efflux system
D NE1080 Outer membrane efflux protein K18139 oprM; outer membrane protein, multidrug efflux system
D NE0538 Outer membrane efflux protein K18139 oprM; outer membrane protein, multidrug efflux system
D NE1387 Polysaccharide export protein K01991 wza; polysaccharide biosynthesis/export protein
D NE2279 yccZ; Polysaccharide export protein K01991 wza; polysaccharide biosynthesis/export protein
D NE1805 wza; putative polysaccharide export protein, outer membrane K01991 wza; polysaccharide biosynthesis/export protein
D NE1710 Bacterial surface antigen (D15) K07277 SAM50; outer membrane protein insertion porin family
D NE0152 PQQ enzyme repeat K17713 bamB; outer membrane protein assembly factor BamB
D NE2404 putative transmembrane protein K07287 bamC; outer membrane protein assembly factor BamC
D NE0506 TPR repeat K05807 bamD; outer membrane protein assembly factor BamD
D NE0615 omlA; possible outer membrane lipoprotein OmlA K06186 bamE; outer membrane protein assembly factor BamE
D NE0930 putative lipoprotein K07278 tamA; translocation and assembly module TamA
D NE0929 putative signal peptide protein K09800 tamB; translocation and assembly module TamB
D NE0064 putative signal peptide protein K09774 lptA; lipopolysaccharide export system protein LptA
D NE0065 conserved hypothetical protein K11719 lptC; lipopolysaccharide export system protein LptC
D NE0881 putative organic solvent tolerance transmembrane protein K04744 lptD; LPS-assembly protein
D NE1138 rlpB; putative lipoprotein B precursor transmembrane K03643 lptE; LPS-assembly lipoprotein
D NE2332 CBS domain K06189 corC; hemolysin (HlyC) family protein
D NE1653 ZIP Zinc transporter K16267 zipB; zinc and cadmium transporter
D NE0345 Acriflavin resistance protein:Heavy metal efflux pump CzcA K15726 czcA; heavy metal efflux system protein
D NE1638 czcA; Acriflavin resistance protein:Heavy metal efflux pump CzcA K15726 czcA; heavy metal efflux system protein
D NE0375 Acriflavin resistance protein:Heavy metal efflux pump CzcA K15726 czcA; heavy metal efflux system protein
D NE1112 RND multidrug efflux transporter K18095 mexY; multidrug efflux pump
D NE0168 multidrug resistance protein MexB K18138 acrB; multidrug efflux pump
D NE0157 probable transmembrane multidrug-efflux system lipoprotein transmembrane K19585 oqxB; multidrug efflux pump
D NE2198 Integral membrane protein, DUF7 K11741 sugE; quaternary ammonium compound-resistance protein SugE
D NE0601 Na+/H+ antiporter NhaC K03315 nhaC; Na+:H+ antiporter, NhaC family
D NE1835 Cation transport protein K03498 trkH; trk/ktr system potassium uptake protein
D NE1834 trkA; Potassium uptake system NAD-binding component K03499 trkA; trk/ktr system potassium uptake protein
D NE1901 NADH-ubiquinone oxidoreductase subunit 5 (chain L) K05559 phaA; multicomponent K+:H+ antiporter subunit A
D NE1902 Protein of unknown function DUF67 K05560 phaC; multicomponent K+:H+ antiporter subunit C
D NE1903 phaD; phaD; PH adaptation potassium efflux system D transmembrane protein K05561 phaD; multicomponent K+:H+ antiporter subunit D
D NE1904 Protein of unknown function DUF68 K05562 phaE; multicomponent K+:H+ antiporter subunit E
D NE1905 PH adaptation potassium efflux system protein F K05563 phaF; multicomponent K+:H+ antiporter subunit F
D NE1906 conserved hypothetical protein K05564 phaG; multicomponent K+:H+ antiporter subunit G
D NE2405 mviN; Virulence factor MVIN-like K03980 murJ; putative peptidoglycan lipid II flippase
D NE0849 similar to nodulin 21 K22736 VIT; vacuolar iron transporter family protein
D NE0990 ftsW; Cell cycle proteins K03588 ftsW; cell division protein FtsW
D NE2493 Uncharacterized protein family UPF0016 K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family
D NE0294 Cytochrome c, class I K07243 FTR; high-affinity iron transporter
D NE0354 possible TonB protein K03832 tonB; periplasmic protein TonB
D NE1626 putative TonB protein K03832 tonB; periplasmic protein TonB
D NE0219 pal; Bacterial outer membrane protein K03640 pal; peptidoglycan-associated lipoprotein
D NE0217 tolA; Proline-rich region K03646 tolA; colicin import membrane protein
D NE0218 tolB; probable tolB-related transport protein K03641 tolB; TolB protein
D NE0902 Periplasmic component of the Tol biopolymer transport system K03641 tolB; TolB protein
D NE1935 Inorganic H+ pyrophosphatase K15987 hppA; K(+)-stimulated pyrophosphate-energized sodium pump [EC:7.2.3.1]
D NE1639 czcB; HlyD family secretion protein K15727 czcB; membrane fusion protein, heavy metal efflux system
D NE0374 putative cation efflux protein K15727 czcB; membrane fusion protein, heavy metal efflux system
D NE0346 possible cation transporter transmembrane protein K15727 czcB; membrane fusion protein, heavy metal efflux system
D NE0158 putative hemolysin-type secretion transmembrane protein K12542 lapC; membrane fusion protein, adhesin transport system
D NE0539 yegM; possible putitive HlyD family secretion protein K18901 bpeE; membrane fusion protein, multidrug efflux system
D NE1113 HlyD family secretion protein K18094 mexX; membrane fusion protein, multidrug efflux system
D NE0169 acrA; HlyD family secretion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D NE0670 possible membrane fusion protein MtrC K21137 triB; membrane fusion protein, multidrug efflux system
D NE0156 mexE; HlyD family secretion protein K19586 oqxA; membrane fusion protein, multidrug efflux system
D NE1082 conserved hypothetical protein K13888 macA; membrane fusion protein, macrolide-specific efflux system
D NE0588 Phage integrase:Chain length determinant protein K16554 exoP; polysaccharide biosynthesis transport protein [EC:2.7.10.3]
D NE1803 yveL; possible similar to capsular polysaccharide biosynthesis K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3]
D NE1804 Chain length determinant protein K25590 epsF; protein tyrosine kinase modulator
D NE2280 epsB; Chain length determinant protein K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
D NE0686 hypothetical protein K16348 ecnB; entericidin B
D NE0768 ccmF; Cytochrome c-type biogenesis protein (CcmF) K02198 ccmF; cytochrome c-type biogenesis protein CcmF
D NE2058 Cytochrome c, class IC:Cytochrome c, class I K07245 pcoD; copper resistance protein D
D NE2059 putative similar to copper export proteins K07156 copC; copper resistance protein C
C 02044 Secretion system [BR:neu02044]
D NE0036 Outer membrane efflux protein K12340 tolC; outer membrane protein
D NE0159 ABC transporter, fused permease and ATPase domains K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D NE0158 putative hemolysin-type secretion transmembrane protein K12542 lapC; membrane fusion protein, adhesin transport system
D NE0160 Outer membrane efflux protein K12543 lapE; outer membrane protein, adhesin transport system
D NE1801 ATP/GTP-binding site motif A (P-loop):AAA ATPase superfamily K02450 gspA; general secretion pathway protein A
D NE1604 General (type II) secretion pathway (GSP) D protein K02453 gspD; general secretion pathway protein D
D NE0705 General (type II) secretion pathway (GSP) D protein K02453 gspD; general secretion pathway protein D
D NE1257 Bacterial type II secretion system protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D NE1609 Bacterial type II secretion system protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D NE1610 Bacterial type II secretion system protein K02455 gspF; general secretion pathway protein F
D NE1256 Bacterial type II secretion system protein K02455 gspF; general secretion pathway protein F
D NE1603 putative general secretion pathway gspG related transmembrane protein K02456 gspG; general secretion pathway protein G
D NE1611 Bacterial general secretion pathway protein G K02456 gspG; general secretion pathway protein G
D NE1602 Bacterial general secretion pathway protein G K02456 gspG; general secretion pathway protein G
D NE1255 Bacterial general secretion pathway protein G K02456 gspG; general secretion pathway protein G
D NE1254 putative general secretory pathway protein H precursor K02457 gspH; general secretion pathway protein H
D NE1253 possible general secretory pathway protein I precursor K02458 gspI; general secretion pathway protein I
D NE1252 hypothetical protein K02459 gspJ; general secretion pathway protein J
D NE0597 pilD; Prepilin cysteine protease (C20), type IV K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D NE1308 Fimbrial protein pilin:Bacterial general secretion pathway protein H K02650 pilA; type IV pilus assembly protein PilA
D NE0596 pilC; Bacterial type II secretion system protein K02653 pilC; type IV pilus assembly protein PilC
D NE1746 Fimbrial protein pilin K02655 pilE; type IV pilus assembly protein PilE
D NE0146 pilF; TPR repeat K02656 pilF; type IV pilus assembly protein PilF
D NE1836 pilG; Response regulator receiver domain K02657 pilG; twitching motility two-component system response regulator PilG
D NE1007 pilH; Response regulator receiver domain K02658 pilH; twitching motility two-component system response regulator PilH
D NE1006 pilI; CheW-like domain K02659 pilI; twitching motility protein PilI
D NE1251 pilJ; Bacterial chemotaxis sensory transducer K02660 pilJ; twitching motility protein PilJ
D NE2316 pilM; putative type 4 fimbrial biogenesis protein PilM K02662 pilM; type IV pilus assembly protein PilM
D NE2315 pilN; putative type 4 fimbrial biogenesis protein PilN K02663 pilN; type IV pilus assembly protein PilN
D NE2314 pilO; putative fimbrial type-4 assembly membrane transmembrane protein K02664 pilO; type IV pilus assembly protein PilO
D NE2313 pilP; putative type 4 fimbrial biogenesis protein PilP K02665 pilP; type IV pilus assembly protein PilP
D NE2312 pilQ; probable pilQ; fimbrial type-4 assembly signal peptide protein K02666 pilQ; type IV pilus assembly protein PilQ
D NE0965 pilT; pilT; twitching mobility protein transport fimbria K02669 pilT; twitching motility protein PilT
D NE0964 pilU; Bacterial type II secretion system protein E K02670 pilU; twitching motility protein PilU
D NE1750 putative pre-pilin leader sequence K02671 pilV; type IV pilus assembly protein PilV
D NE1749 conserved hypothetical protein K02672 pilW; type IV pilus assembly protein PilW
D NE1748 hypothetical protein K02673 pilX; type IV pilus assembly protein PilX
D NE1747 pilY1; putative type 4 fimbrial biogenesis protein PilY1 K02674 pilY1; type IV pilus assembly protein PilY1
D NE1751 putative type-4 fimbrial pilin related signal peptide protein K08084 fimT; type IV fimbrial biogenesis protein FimT
D NE0690 possible transmembrane protein K08086 fimV; pilus assembly protein FimV
D NE0394 YGGT family K02221 yggT; YggT family protein
D NE0940 putative DNA transport competence protein, ComEA K02237 comEA; competence protein ComEA
D NE2408 DNA internalization-related competence protein ComEC/Rec2 K02238 comEC; competence protein ComEC
D NE2488 flhA; Bacterial export FHIPEP family K02400 flhA; flagellar biosynthesis protein FlhA
D NE2487 flhB; FlhB HrpN YscU SpaS Family K02401 flhB; flagellar biosynthesis protein FlhB
D NE2078 ylqH; possible similar to flagellar biosynthetic protein K04061 flhB2; flagellar biosynthesis protein
D NE2083 fliF; fliF; flagellar M-ring transmembrane protein K02409 fliF; flagellar M-ring protein FliF
D NE2085 fliH; Flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D NE2086 fliI; Flagellar ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D NE0463 fliN; possible flagellar motor switch FliN K02417 fliN; flagellar motor switch protein FliN
D NE0462 possible mopB flagellar biosynthesis K02418 fliO; flagellar protein FliO/FliZ
D NE0461 fliP; Flagella transport protein FliP family K02419 fliP; flagellar biosynthesis protein FliP
D NE0460 fliQ; Bacterial export proteins, family 3 (FliQ) K02420 fliQ; flagellar biosynthesis protein FliQ
D NE0459 fliR; Bacterial export protein, family 1 K02421 fliR; flagellar biosynthesis protein FliR
D NE0246 TRAG protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D NE1511 dsbC; hypothetical protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D NE0516 hypothetical protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D NE0808 secA; SecA protein:SEC-C motif K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D NE2210 secB; Bacterial protein export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D NE1143 SecD/SecF/SecDF export membrane proteins K03072 secD; preprotein translocase subunit SecD
D NE1144 secF; protein-export membrane protein K03074 secF; preprotein translocase subunit SecF
D NE1778 secG; Preprotein translocase SecG subunit K03075 secG; preprotein translocase subunit SecG
D NE0421 secY; SecY protein K03076 secY; preprotein translocase subunit SecY
D NE1460 ffh; Signal recognition particle GTPase ffh protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D NE1415 pilA; Signal recognition particle GTPase, FtsY protein K03110 ftsY; fused signal recognition particle receptor
D NE1142 Domain of unknown function DUF219 K03210 yajC; preprotein translocase subunit YajC
D NE0387 60Kd inner membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D NE0639 mttA/Hcf106 family K03116 tatA; sec-independent protein translocase protein TatA
D NE0638 mttA/Hcf106 family K03117 tatB; sec-independent protein translocase protein TatB
D NE0637 tatC; Uncharacterized protein family UPF0032 K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:neu02042]
D NE0893 conserved hypothetical protein K10954 zot; zona occludens toxin
C 02022 Two-component system [BR:neu02022]
D NE1288 phoR; Sensory transduction histidine kinases K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D NE2131 phoB; possible phoB; Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D NE1408 Sensory transduction histidine kinases K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D NE1409 possible phoP; Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain K07660 phoP; two-component system, OmpR family, response regulator PhoP
D NE0515 baeS; Sensory transduction histidine kinases K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3]
D NE0514 possible baeR; Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain K07664 baeR; two-component system, OmpR family, response regulator BaeR
D NE0667 possible Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain K02483 K02483; two-component system, OmpR family, response regulator
D NE0344 tctD; possible Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding K02483 K02483; two-component system, OmpR family, response regulator
D NE1738 Sensory transduction histidine kinases K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D NE1974 Sensory transduction histidine kinases K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D NE1975 NtrX; nitrogen assimilation regulatory protein K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX
D NE0015 yfhK; Sensory transduction histidine kinases K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D NE0017 yfhA; putative transcriptional regulator of two-component regulator protein K07715 glrR; two-component system, NtrC family, response regulator GlrR
D NE1124 atoC; response regulatory protein K02481 flgR; two-component system, NtrC family, response regulator
D NE1866 cheA; probable chemotaxis sensor histidine kinase transcription regulator protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D NE1923 cheY; Response regulator receiver domain K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D NE1859 cheB; CheB methylesterase:Response regulator receiver domain K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D NE1250 two-component hybrid sensor and regulator K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator)
D NE1836 pilG; Response regulator receiver domain K02657 pilG; twitching motility two-component system response regulator PilG
D NE1007 pilH; Response regulator receiver domain K02658 pilH; twitching motility two-component system response regulator PilH
D NE2082 fleS; putative two-component sensor K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3]
D NE2081 sigma-54 dependent response regulator K10943 flrC; two-component system, response regulator FlrC
D NE1314 probable two-component sensor K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3]
D NE1313 Response regulator receiver domain:Helix-turn-helix Fis-type K15012 regA; two-component system, response regulator RegA
C 02035 Bacterial motility proteins [BR:neu02035]
D NE1866 cheA; probable chemotaxis sensor histidine kinase transcription regulator protein K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D NE1865 cheW; CheW-like domain K03408 cheW; purine-binding chemotaxis protein CheW
D NE1397 CheW-like domain K03408 cheW; purine-binding chemotaxis protein CheW
D NE1860 conserved hypothetical protein K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44]
D NE1861 cheR; CheR-type MCP methyl-transferase:Generic methyl-transferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D NE1859 cheB; CheB methylesterase:Response regulator receiver domain K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D NE1923 cheY; Response regulator receiver domain K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D NE1924 cheZ1; putative chemotaxis protein CheZ K03414 cheZ; chemotaxis protein CheZ
D NE1863 probable chemotaxis transducer K03406 mcp; methyl-accepting chemotaxis protein
D NE1864 HAMP domain:Bacterial chemotaxis sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D NE2085 fliH; Flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D NE2086 fliI; Flagellar ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D NE2087 fliJ; Flagellar FliJ protein K02413 fliJ; flagellar protein FliJ
D NE0462 possible mopB flagellar biosynthesis K02418 fliO; flagellar protein FliO/FliZ
D NE0461 fliP; Flagella transport protein FliP family K02419 fliP; flagellar biosynthesis protein FliP
D NE0460 fliQ; Bacterial export proteins, family 3 (FliQ) K02420 fliQ; flagellar biosynthesis protein FliQ
D NE0459 fliR; Bacterial export protein, family 1 K02421 fliR; flagellar biosynthesis protein FliR
D NE2488 flhA; Bacterial export FHIPEP family K02400 flhA; flagellar biosynthesis protein FlhA
D NE2487 flhB; FlhB HrpN YscU SpaS Family K02401 flhB; flagellar biosynthesis protein FlhB
D NE2084 fliG; Flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D NE0464 fliM; Flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D NE0463 fliN; possible flagellar motor switch FliN K02417 fliN; flagellar motor switch protein FliN
D NE2083 fliF; fliF; flagellar M-ring transmembrane protein K02409 fliF; flagellar M-ring protein FliF
D NE0309 flgI; Flagellar P-ring protein K02394 flgI; flagellar P-ring protein FlgI
D NE0301 flgA; putative flagella basal body P-ring formation protein K02386 flgA; flagellar basal body P-ring formation protein FlgA
D NE0308 flgH; Flagellar L-ring protein K02393 flgH; flagellar L-ring protein FlgH
D NE0465 fliL; putative flagellar fliL transmembrane protein K02415 fliL; flagellar protein FliL
D NE2080 fliE; Flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D NE2088 possible flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK
D NE0302 flgB; Flagella basal body rod protein K02387 flgB; flagellar basal-body rod protein FlgB
D NE0303 flgC; Flagella basal body rod protein K02388 flgC; flagellar basal-body rod protein FlgC
D NE0304 flgD; putative basal-body rod modification protein FlgD K02389 flgD; flagellar basal-body rod modification protein FlgD
D NE0306 flgF; Flagella basal body rod protein K02391 flgF; flagellar basal-body rod protein FlgF
D NE0307 flgG; Flagella basal body rod protein K02392 flgG; flagellar basal-body rod protein FlgG
D NE0310 flgJ; Mannosyl-glycoprotein endo-beta-N-acetylglucosamidases K02395 flgJ; peptidoglycan hydrolase FlgJ
D NE0305 flgE; Flagella basal body rod protein K02390 flgE; flagellar hook protein FlgE
D NE0311 flgK; Flagella basal body rod protein K02396 flgK; flagellar hook-associated protein 1
D NE0312 flgL; Flagellin, N-terminus K02397 flgL; flagellar hook-associated protein 3 FlgL
D NE2477 hypothetical protein K02399 flgN; flagellar biosynthesis protein FlgN
D NE1593 hag; hag; flagellin K02406 fliC; flagellin
D NE1595 fliD; Flagellar hook-associated protein 2 K02407 fliD; flagellar hook-associated protein 2
D NE1596 fliS; Flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS
D NE1597 conserved hypothetical protein K02423 fliT; flagellar protein FliT
D NE2407 flhD; probable flagellar transcriptional activator transcription regulator protein K02403 flhD; flagellar transcriptional activator FlhD
D NE2406 flhC; probable flagellar transcriptional activator transcription regulator protein K02402 flhC; flagellar transcriptional activator FlhC
D NE2491 fliA; Sigma-70 factor family K02405 fliA; RNA polymerase sigma factor FliA
D NE0046 motA; probable chemotaxis (motility protein A) transmembrane K02556 motA; chemotaxis protein MotA
D NE0045 motB; Bacterial outer membrane protein K02557 motB; chemotaxis protein MotB
D NE2082 fleS; putative two-component sensor K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3]
D NE2081 sigma-54 dependent response regulator K10943 flrC; two-component system, response regulator FlrC
D NE2478 hypothetical protein K02398 flgM; negative regulator of flagellin synthesis FlgM
D NE1594 conserved hypothetical protein K06603 flaG; flagellar protein FlaG
D NE2489 flhF; possible flhF; flagellar biosynthetic protein FlhF K02404 flhF; flagellar biosynthesis protein FlhF
D NE2490 putative MinD-related protein K04562 flhG; flagellar biosynthesis protein FlhG
D NE1836 pilG; Response regulator receiver domain K02657 pilG; twitching motility two-component system response regulator PilG
D NE1007 pilH; Response regulator receiver domain K02658 pilH; twitching motility two-component system response regulator PilH
D NE1006 pilI; CheW-like domain K02659 pilI; twitching motility protein PilI
D NE1251 pilJ; Bacterial chemotaxis sensory transducer K02660 pilJ; twitching motility protein PilJ
D NE1250 two-component hybrid sensor and regulator K06596 chpA; chemosensory pili system protein ChpA (sensor histidine kinase/response regulator)
D NE0965 pilT; pilT; twitching mobility protein transport fimbria K02669 pilT; twitching motility protein PilT
D NE0964 pilU; Bacterial type II secretion system protein E K02670 pilU; twitching motility protein PilU
D NE1308 Fimbrial protein pilin:Bacterial general secretion pathway protein H K02650 pilA; type IV pilus assembly protein PilA
D NE0596 pilC; Bacterial type II secretion system protein K02653 pilC; type IV pilus assembly protein PilC
D NE0597 pilD; Prepilin cysteine protease (C20), type IV K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D NE0146 pilF; TPR repeat K02656 pilF; type IV pilus assembly protein PilF
D NE2312 pilQ; probable pilQ; fimbrial type-4 assembly signal peptide protein K02666 pilQ; type IV pilus assembly protein PilQ
D NE2313 pilP; putative type 4 fimbrial biogenesis protein PilP K02665 pilP; type IV pilus assembly protein PilP
D NE2314 pilO; putative fimbrial type-4 assembly membrane transmembrane protein K02664 pilO; type IV pilus assembly protein PilO
D NE2315 pilN; putative type 4 fimbrial biogenesis protein PilN K02663 pilN; type IV pilus assembly protein PilN
D NE2316 pilM; putative type 4 fimbrial biogenesis protein PilM K02662 pilM; type IV pilus assembly protein PilM
D NE1750 putative pre-pilin leader sequence K02671 pilV; type IV pilus assembly protein PilV
D NE1749 conserved hypothetical protein K02672 pilW; type IV pilus assembly protein PilW
D NE1748 hypothetical protein K02673 pilX; type IV pilus assembly protein PilX
D NE1747 pilY1; putative type 4 fimbrial biogenesis protein PilY1 K02674 pilY1; type IV pilus assembly protein PilY1
D NE1746 Fimbrial protein pilin K02655 pilE; type IV pilus assembly protein PilE
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:neu04812]
D NE2070 mreB; Heat shock protein hsp70:Cell shape determining protein MreB/Mrl K03569 mreB; rod shape-determining protein MreB and related proteins
D NE0997 ftsZ; Cell division protein FtsZ:Tubulin/FtsZ family K03531 ftsZ; cell division protein FtsZ
D NE0996 ftsA; Cell division protein FtsA K03590 ftsA; cell division protein FtsA
D NE1831 minC; putative cell division inhibitor MinC K03610 minC; septum site-determining protein MinC
D NE1830 minD; ParA family ATPase K03609 minD; septum site-determining protein MinD
D NE1829 minE; cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor
D NE2474 parA2; ParA family ATPase K03496 parA; chromosome partitioning protein
D NE1495 soj; ParA family ATPase K03496 parA; chromosome partitioning protein
D NE2473 spoOJ; ParB-like nuclease domain:ParB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:neu04147]
D NE1762 hptG; probable hptG; chaperone (heat shock protein htpg) K04079 HSP90A; molecular chaperone HtpG
D NE1044 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D NE0327 cbbG; Glyceraldehyde 3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D NE0326 cbbK; Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D NE0325 pykA1; Pyruvate kinase family K00873 PK; pyruvate kinase [EC:2.7.1.40]
D NE0042 ppiA; Cyclophilin-type peptidyl-prolyl cis-trans isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D NE0028 groEL; TCP-1 (Tailless complex polypeptide)/cpn60 chaparonin family K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D NE1949 dnaK; Heat shock protein hsp70, molecular chaperone K04043 dnaK; molecular chaperone DnaK
D NE2263 pgi; Phosphoglucose isomerase (PGI) K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D NE0095 guaB; guaB; inosine-5'-monophosphate dehydrogenase oxidoreductase protein K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D NE0399 tuf2; GTPases-translation elongation factors and sulfate adenylate transferase subunit 1 K02358 tuf; elongation factor Tu
D NE2052 tuf2; GTPases-translation elongation factors and sulfate adenylate transferase subunit 1 K02358 tuf; elongation factor Tu
D NE0640 hitA; HIT (Histidine triad) family K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D NE1549 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D NE2235 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D NE2262 bktB; Thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D NE0660 ahcY; S-adenosyl-L-homocysteine hydrolase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D NE1933 adk; Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D NE0181 apt; Phosphoribosyl transferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D NE1854 argH; argH: argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D NE1437 argG; Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D NE0521 cbbF; fructose-1,6-bisphosphatase/sedoheptulose-1,7-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D NE2029 glgB; Glycoside hydrolase family 13:Isoamylase N-terminus K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D NE0504 glnA1; Glutamine synthetase type I, glnA K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D NE2457 Delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D NE0077 Pterin 4 alpha carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D NE0334 D-isomer specific 2-hydroxyacid dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D NE1688 serA; D-isomer specific 2-hydroxyacid dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D NE0876 purH; probable phosphoribosylaminoimidazolecarboxamide formyltransferase and IMP cyclodydrolase transmembrane protein K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D NE0076 Peptidase family M48 K06013 STE24; STE24 endopeptidase [EC:3.4.24.84]
D NE2157 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D NE2319 lpdA3; pdA3; dihydrolipoamide dehydrogenase E3 component K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D NE0774 pyridine nucleotide-disulfide oxidoreductase, class I K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D NE0398 zwf; Glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D NE1779 cbbJ; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D NE1780 Phosphoglycerate mutase family K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D NE0178 gpmA; Phosphoglycerate mutase family K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
C 02048 Prokaryotic defense system [BR:neu02048]
D NE0111 Protein of unknown function DUF48 K15342 cas1; CRISP-associated protein Cas1
D NE0844 Protein of unknown function DUF48 K15342 cas1; CRISP-associated protein Cas1
D NE0845 DUF196 K09951 cas2; CRISPR-associated protein Cas2
D NE0112 hypothetical protein K09951 cas2; CRISPR-associated protein Cas2
D NE0110 hypothetical protein K09951 cas2; CRISPR-associated protein Cas2
D NE0834 DEAD/DEAH box helicase:HD domain K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
D NE0123 conserved hypothetical protein K07016 csm1; CRISPR-associated protein Csm1
D NE0122 hypothetical protein K19138 csm2; CRISPR-associated protein Csm2
D NE0121 conserved hypothetical protein K09002 csm3; CRISPR-associated protein Csm3
D NE0120 hypothetical protein K19139 csm4; CRISPR-associated protein Csm4
D NE0119 hypothetical protein K19140 csm5; CRISPR-associated protein Csm5
D NE0116 hypothetical protein K19145 csx16; CRISPR-associated protein Csx16
D NE0382 hsdR; Restriction enzymes type I helicase subunits and related helicases K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D NE2499 hsdR; DEAD/DEAH box helicase K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D NE2527 Restriction enzymes type I helicase subunits and related helicases K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D NE0384 Restriction modification system, type I K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D NE2496 Restriction modification system, type I K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D NE2526 Restriction modification system, type I K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D NE2524 possible type I restriction-modification system methylation subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D NE2522 type I restriction-modification system methylation subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D NE0385 hsdM; hsdM; site-specific DNA-methyltransferase, type I modification K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D NE2497 hsdM; type I restriction modification enzyme methylase subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D NE2306 conserved hypothetical protein K01156 res; type III restriction enzyme [EC:3.1.21.5]
D NE2309 Adenine specific DNA methylase Mod K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D NE2528 AAA ATPase superfamily K07452 mcrB; 5-methylcytosine-specific restriction enzyme B [EC:3.1.21.-]
D NE2529 mcrC; possible mcrC protein K19147 mcrC; 5-methylcytosine-specific restriction enzyme subunit McrC
D NE2450 putative Mrr restriction system protein K07448 mrr; restriction system protein
D NE1181 PemK-like protein K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D NE1579 PemK-like protein K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D NE1306 conserved hypothetical protein K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D NE0921 conserved hypothetical protein K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D NE1374 conserved hypothetical protein K07172 mazE; antitoxin MazE
D NE0974 PemK-like protein K18841 chpB; mRNA interferase ChpB [EC:3.1.-.-]
D NE0975 hypothetical protein K18842 chpS; antitoxin ChpS
D NE1999 conserved hypothetical protein K19155 yhaV; toxin YhaV [EC:3.1.-.-]
D NE0292 conserved hypothetical protein K19155 yhaV; toxin YhaV [EC:3.1.-.-]
D NE1998 sohA; HtaR suppressor protein K19156 prlF; antitoxin PrlF
D NE0293 hypothetical protein K19156 prlF; antitoxin PrlF
D NE1584 hypothetical protein K06218 relE; mRNA interferase RelE/StbE
D NE0476 Protein of unknown function DUF79 K06218 relE; mRNA interferase RelE/StbE
D NE1563 Protein of unknown function DUF79 K06218 relE; mRNA interferase RelE/StbE
D NE0475 Helix-turn-helix protein, CopG family K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
D NE1583 conserved hypothetical protein K18923 stbD; antitoxin StbD
D NE1562 conserved hypothetical protein K18923 stbD; antitoxin StbD
D NE0713 conserved hypothetical protein K19158 yoeB; toxin YoeB [EC:3.1.-.-]
D NE1345 conserved hypothetical protein K19158 yoeB; toxin YoeB [EC:3.1.-.-]
D NE1352 conserved hypothetical protein K19158 yoeB; toxin YoeB [EC:3.1.-.-]
D NE0712 DUF172 K19159 yefM; antitoxin YefM
D NE1346 DUF172 K19159 yefM; antitoxin YefM
D NE1310 hipA; possible HipA protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D NE1311 Helix-turn-helix motif K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D NE1076 putative CcdB-like protein K19163 ccdB; toxin CcdB
D NE1077 conserved hypothetical protein K19164 ccdA; antitoxin CcdA
D NE2114 putative plasmid stabilization protein ParE K19092 parE1_3_4; toxin ParE1/3/4
D NE0261 putative plasmid stabilization element ParE K19092 parE1_3_4; toxin ParE1/3/4
D NE1525 putative plasmid stabilization protein ParE K19092 parE1_3_4; toxin ParE1/3/4
D NE1090 conserved plasmid protein K19092 parE1_3_4; toxin ParE1/3/4
D NE0552 conserved hypothetical protein K19092 parE1_3_4; toxin ParE1/3/4
D NE0702 conserved hypothetical protein K19092 parE1_3_4; toxin ParE1/3/4
D NE0262 conserved hypothetical protein K07746 parD1_3_4; antitoxin ParD1/3/4
D NE1524 conserved hypothetical protein K07746 parD1_3_4; antitoxin ParD1/3/4
D NE1266 putative death on curing protein K07341 doc; death on curing protein
D NE2451 putative death on curing protein K07341 doc; death on curing protein
D NE1588 conserved hypothetical protein K19166 higB; mRNA interferase HigB [EC:3.1.-.-]
D NE0491 conserved hypothetical protein K07334 higB-1; toxin HigB-1
D NE0482 conserved hypothetical protein K07334 higB-1; toxin HigB-1
D NE1305 proteic killer suppression protein K07334 higB-1; toxin HigB-1
D NE1109 conserved hypothetical protein K07334 higB-1; toxin HigB-1
D NE1587 Helix-turn-helix motif K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D NE1110 Helix-turn-helix motif K21498 higA-1; antitoxin HigA-1
D NE1304 Bacterial regulatory protein, LacI family:Helix-turn-helix motif K21498 higA-1; antitoxin HigA-1
D NE1365 Helix-turn-helix motif K21498 higA-1; antitoxin HigA-1
D NE0490 Helix-turn-helix motif K21498 higA-1; antitoxin HigA-1
D NE0481 Helix-turn-helix motif K21498 higA-1; antitoxin HigA-1
D NE0498 ntrR2; PIN (PilT N terminus) domain K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
D NE0479 PIN (PilT N terminus) domain K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
D NE0287 vapC; PIN (PilT N terminus) domain K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
D NE0497 putative NtrP protein K18829 mvpT; antitoxin VapB
D NE0478 conserved hypothetical protein K18829 mvpT; antitoxin VapB
D NE2112 PIN (PilT N terminus) domain K07062 fitB; toxin FitB [EC:3.1.-.-]
D NE1581 PIN (PilT N terminus) domain K07062 fitB; toxin FitB [EC:3.1.-.-]
D NE0553 PIN (PilT N terminus) domain K07062 fitB; toxin FitB [EC:3.1.-.-]
D NE1064 PIN (PilT N terminus) domain K07062 fitB; toxin FitB [EC:3.1.-.-]
D NE2431 PIN (PilT N terminus) domain K07062 fitB; toxin FitB [EC:3.1.-.-]
D NE1065 putative plasmid stability protein K21495 fitA; antitoxin FitA
D NE1582 putative plasmid stability protein K21495 fitA; antitoxin FitA
D NE1590 hypothetical protein K21495 fitA; antitoxin FitA
D NE0997 ftsZ; Cell division protein FtsZ:Tubulin/FtsZ family K03531 ftsZ; cell division protein FtsZ
D NE2070 mreB; Heat shock protein hsp70:Cell shape determining protein MreB/Mrl K03569 mreB; rod shape-determining protein MreB and related proteins
D NE1624 gltX; gltX; glutamate-tRNA synthetase (catalytic subunit)(sye protein) K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D NE1513 hypothetical protein K19168 cptA; toxin CptA
D NE2372 conserved hypothetical protein K09159 cptB; antitoxin CptB
D NE0174 Aminotransferase class-V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules [BR:neu04090]
D NE0448 Rh50; Ammonium transporter family K06580 SLC42A; ammonium transporter Rh
C 01504 Antimicrobial resistance genes [BR:neu01504]
D NE1408 Sensory transduction histidine kinases K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D NE1409 possible phoP; Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain K07660 phoP; two-component system, OmpR family, response regulator PhoP
D NE0169 acrA; HlyD family secretion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D NE0168 multidrug resistance protein MexB K18138 acrB; multidrug efflux pump
D NE1111 Outer membrane efflux protein K18139 oprM; outer membrane protein, multidrug efflux system
D NE0170 oprM; Outer membrane efflux protein K18139 oprM; outer membrane protein, multidrug efflux system
D NE1080 Outer membrane efflux protein K18139 oprM; outer membrane protein, multidrug efflux system
D NE0538 Outer membrane efflux protein K18139 oprM; outer membrane protein, multidrug efflux system
D NE1115 oprN; Outer membrane efflux protein K18300 oprN; outer membrane protein, multidrug efflux system
D NE1114 Bacterial regulatory proteins, TetR family K18129 mexZ; TetR/AcrR family transcriptional regulator, mexXY operon repressor
D NE1113 HlyD family secretion protein K18094 mexX; membrane fusion protein, multidrug efflux system
D NE1112 RND multidrug efflux transporter K18095 mexY; multidrug efflux pump
D NE0036 Outer membrane efflux protein K12340 tolC; outer membrane protein
D NE0539 yegM; possible putitive HlyD family secretion protein K18901 bpeE; membrane fusion protein, multidrug efflux system
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:neu03100]
D RNA_34 tRNAAla1; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RNA_41 tRNAAla2; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RNA_27 tRNAArg4; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RNA_8 tRNAArg1; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RNA_10 tRNAArg2; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RNA_12 tRNAArg3; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RNA_14 tRNAAsn1; tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D RNA_3 tRNAAsp1; tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D RNA_37 tRNACys1; tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D RNA_6 tRNAGln1; tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D RNA_35 tRNAGlu1; tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D RNA_24 tRNAGly2; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RNA_20 tRNAGly1; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RNA_36 tRNAGly3; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RNA_11 tRNAHis1; tRNA-His K14226 tRNA-His; tRNA His
D RNA_40 tRNAIle1; tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D RNA_38 tRNALeu4; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RNA_22 tRNALeu3; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RNA_39 tRNALeu5; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RNA_18 tRNALeu2; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RNA_7 tRNALeu1; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RNA_30 tRNALys1; tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D RNA_29 tRNAMet3; tRNA-Met K14230 tRNA-Met; tRNA Met
D RNA_19 tRNAMet2; tRNA-Met K14230 tRNA-Met; tRNA Met
D RNA_16 tRNAMet1; tRNA-Met K14230 tRNA-Met; tRNA Met
D RNA_13 tRNAPhe1; tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D RNA_9 tRNAPro1; tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D RNA_15 tRNAPro2; tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D RNA_33 tRNAPro3; tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D RNA_31 tRNASer3; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RNA_4 tRNASer1; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RNA_21 tRNASer2; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RNA_32 tRNASer4; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RNA_25 tRNAThr1; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RNA_28 tRNAThr3; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RNA_26 tRNAThr2; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RNA_5 tRNATrp1; tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D RNA_23 tRNATyr1; tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D RNA_17 tRNAVal3; tRNA-Val K14237 tRNA-Val; tRNA Val
D RNA_2 tRNAVal2; tRNA-Val K14237 tRNA-Val; tRNA Val
D RNA_1 tRNAVal1; tRNA-Val K14237 tRNA-Val; tRNA Val
D RNA_45 16S_rRNA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RNA_46 23S_rRNA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RNA_42 rrnA; rRNA operon K01980 23SrRNA; 23S ribosomal RNA
D RNA_44 5S_rRNA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RNA_48 ffs; 4.5S RNA component of signal recognition particle (SRP) K01983 ffs; SRP RNA
D RNA_47 rnpB; RNA component of RNaseP K01978 rnpB; M1 RNA
D RNA_43 tmRNA; tmRNA, 10Sa RNA, SsrA K15035 ssrA; transfer-messenger RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D NE1997 glucose dehydrogenase B K21430 yliI; aldose sugar dehydrogenase [EC:1.1.5.-]
D NE1434 putative coenzyme PQQ synthesis protein c, putative K06137 pqqC; pyrroloquinoline-quinone synthase [EC:1.3.3.11]
D NE1701 possible msrA; peptide methionine sulfoxide reductase K12267 msrAB; peptide methionine sulfoxide reductase msrA/msrB [EC:1.8.4.11 1.8.4.12]
D NE0522 Glutathione S-transferase C terminus K07393 ECM4; glutathionyl-hydroquinone reductase [EC:1.8.5.7]
D NE1315 ccp; cytochrome c551 peroxidase K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5]
D NE2137 putative methylamine utilization protein MauG precursor K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5]
D NE0772 bcp; bacterioferritin comigratory protein K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D NE2465 Alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen K24119 ahpC; NADH-dependent peroxiredoxin subunit C [EC:1.11.1.26]
D NE2144 DUF209 K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D NE1545 DUF209 K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D NE2125 fiu; iron-regulated outer membrane protein K07336 K07336; PKHD-type hydroxylase [EC:1.14.11.-]
D NE0839 merA; merA; mercuric reductase K00520 merA; mercuric reductase [EC:1.16.1.1]
D NE0315 mnxG; possible multicopper oxidase K22349 mnxG; manganese oxidase [EC:1.16.3.3]
D NE1678 yfgD; putative arsenate reductase K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1]
D NE0037 pcm; possible pcm; protein-L-isoaspartate o-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D NE0949 pimt: protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D NE0320 GCN5-related N-acetyltransferase K22441 paiA; diamine N-acetyltransferase [EC:2.3.1.57]
D NE1188 lnt; Carbon-nitrogen hydrolase:Apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D NE2219 aat; Leucyl/phenylalanyl-tRNA--protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6]
D NE2220 conserved hypothetical protein K21420 bpt; leucyl-tRNA---protein transferase [EC:2.3.2.29]
D NE2173 Glycosyl transferase, family 2 K13670 pimF; putative glycosyltransferase [EC:2.4.-.-]
D NE0105 lgt; Prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D NE1855 conserved hypothetical protein K15523 FN3KRP; protein-ribulosamine 3-kinase [EC:2.7.1.172]
D NE2391 ApbE family K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D NE2358 conserved hypothetical protein K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33]
D NE2365 conserved hypothetical protein K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33]
D NE1329 glnE; putative glutamate-ammonia-ligase adenylyltransferase (glutamine-synthetase adenylyltransferase) protein K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]
D NE2098 Maturase; integron/retron-type RNA-directed DNA polymerase (Reverse transcriptase); part of type II intron K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D NE2190 Maturase; integron/retron-type RNA-directed DNA polymerase (Reverse transcriptase); part of type II intron K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D NE0059 HPr(Ser) kinase K06023 hprK; HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-]
D NE2350 CAIB/BAIF family K18702 uctC; CoA:oxalate CoA-transferase [EC:2.8.3.19]
D NE0214 4-hydroxybenzoyl-CoA thioesterase family active site K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D NE1724 PHP domain N-terminal region:PHP domain C-terminal region K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D NE0848 Phosphoglycerate mutase family K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D NE1516 Uncharacterized protein family UPF0006 K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D NE2385 Staphylococcus nuclease (SNase) homologues K01174 nuc; micrococcal nuclease [EC:3.1.31.1]
D NE2534 Glycoside hydrolase family 24 K01185 E3.2.1.17; lysozyme [EC:3.2.1.17]
D NE2344 possible unsaturated glucuronyl hydrolase K18581 ugl; unsaturated chondroitin disaccharide hydrolase [EC:3.2.1.180]
D NE1755 Formylmethionine deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D NE1970 def; Formylmethionine deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D NE1327 Carbon-nitrogen hydrolase K11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128]
D NE1642 Maf-like protein K25422 yceF; 7-methyl-GTP pyrophosphatase [EC:3.6.1.-]
D NE0020 possible sugar kinase K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D NE0923 Cyanophycin synthetase K03802 cphA; cyanophycin synthetase [EC:6.3.2.29 6.3.2.30]
D NE0922 cphA; putative cyanophycin synthetase K03802 cphA; cyanophycin synthetase [EC:6.3.2.29 6.3.2.30]
D NE2217 mpl; mpl; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase transmembrane protein K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45]
D NE2222 3Fe-4S ferredoxin:4Fe-4S ferredoxin, iron-sulfur binding domain K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2]
D NE2397 nqrA; Na+-translocating NADH:ubiquinone oxidoreductase subunit Nrq1 K00346 nqrA; Na+-transporting NADH:ubiquinone oxidoreductase subunit A [EC:7.2.1.1]
D NE2396 nqrB; Na+-translocating NADH:ubiquinone oxidoreductase subunit Nrq2 K00347 nqrB; Na+-transporting NADH:ubiquinone oxidoreductase subunit B [EC:7.2.1.1]
D NE2395 nqrC; Na+-translocating NADH:ubiquinone oxidoreductase subunit Nrq3 K00348 nqrC; Na+-transporting NADH:ubiquinone oxidoreductase subunit C [EC:7.2.1.1]
D NE2394 nqrD; RnfA-Nqr electron transport subunit K00349 nqrD; Na+-transporting NADH:ubiquinone oxidoreductase subunit D [EC:7.2.1.1]
D NE2393 nqrE; RnfA-Nqr electron transport subunit K00350 nqrE; Na+-transporting NADH:ubiquinone oxidoreductase subunit E [EC:7.2.1.1]
D NE2392 nqrF; nqrF; Na(+)-translocating NADH-ubiquinone reductase subunit F K00351 nqrF; Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:7.2.1.1]
C 99981 Carbohydrate metabolism
D NE0525 CBS domain K04767 acuB; acetoin utilization protein AcuB
C 99982 Energy metabolism
D NE0006 fdxA; 7Fe ferredoxin:4Fe-4S ferredoxin, iron-sulfur binding domain K05524 fdxA; ferredoxin
D NE0024 Cytochrome c, class I K12263 cccB; cytochrome c551
D NE1446 NifU-like N terminal domain K04488 iscU; nitrogen fixation protein NifU and related proteins
D NE2006 norD; von Willebrand factor type A domain K02448 norD; nitric oxide reductase NorD protein
D NE1918 cbbO; von Willebrand factor type A domain K02448 norD; nitric oxide reductase NorD protein
D NE2005 norQ protein K04748 norQ; nitric oxide reductase NorQ protein
D NE1919 cbbQ; nitric oxide reductase NorQ protein K04748 norQ; nitric oxide reductase NorQ protein
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D NE0966 Uncharacterized pyridoxal-5'-phosphate dependent enzyme family UPF0001 K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
C 99987 Cofactor metabolism
D NE0593 hemY; putative protein porphyrin biosynthesis K02498 hemY; HemY protein
D NE1869 aarF; ABC1 family K03688 ubiB; ubiquinone biosynthesis protein
D NE0091 Universal stress protein (Usp):ABC1 family K03688 ubiB; ubiquinone biosynthesis protein
D NE1868 conserved hypothetical protein K03690 ubiJ; ubiquinone biosynthesis accessory factor UbiJ
D NE0192 conserved hypothetical protein K09806 ubiK; ubiquinone biosynthesis accessory factor UbiK
D NE0300 Bacterial regulatory proteins, TetR family K18587 COQ9; ubiquinone biosynthesis protein COQ9
C 99988 Secondary metabolism
C 99999 Others
D NE1276 conserved hypothetical protein K15977 K15977; putative oxidoreductase
D NE1546 putative membrane protein K15977 K15977; putative oxidoreductase
D NE0523 conserved hypothetical protein K15977 K15977; putative oxidoreductase
D NE0850 Phospholipase/Carboxylesterase K06999 K06999; phospholipase/carboxylesterase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D NE1312 cspD2; Cold-shock DNA-binding domain K03704 cspA; cold shock protein
D NE1731 cspD2; Cold-shock DNA-binding domain K03704 cspA; cold shock protein
D NE2197 tex; S1 RNA binding domain K06959 tex; protein Tex
C 99974 Translation
D NE1117 yhiH; ATPase component ABC-type multidrug transport system K13926 rbbA; ribosome-dependent ATPase
D NE0025 Metallo-beta-lactamase superfamily K07576 K07576; metallo-beta-lactamase family protein
C 99975 Protein processing
D NE1732 DUF174 K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D NE0030 tig; FKBP-type peptidyl-prolyl cis-trans isomerase (PPIase) K03545 tig; trigger factor
D NE0430 smpB; SmpB protein K03664 smpB; SsrA-binding protein
D NE0193 probable Mg(2+) chelatase family protein K07391 comM; magnesium chelatase family protein
D NE2553 conserved hypothetical protein K07396 K07396; putative protein-disulfide isomerase
D NE1136 conserved hypothetical protein K07397 yhfA; putative redox protein
D NE2468 Protein of unknown function DUF107 K07403 nfeD; membrane-bound serine protease (ClpP class)
C 99976 Replication and repair
D NE1464 radC; DNA repair protein radC family K03630 radC; DNA repair protein RadC
D NE0719 Uncharacterised protein family UPF0102 K07460 yraN; putative endonuclease
D NE0711 Uncharacterised protein family UPF0102 K07460 yraN; putative endonuclease
D NE1968 smf; SMF family K04096 smf; DNA processing protein
D NE2521 conserved hypothetical protein K04096 smf; DNA processing protein
D NE1053 Uncharacterized ATPase related to the helicase subunit of the Holliday junction resolvase K07478 ycaJ; putative ATPase
D NE0233 Toprim domain K06919 K06919; putative DNA primase/helicase
D NE0154 tISRso8a; Transposase IS911 HTH and LZ region K07483 K07483; transposase
D NE1270 Transposase IS911 HTH and LZ region K07483 K07483; transposase
D NE0452 Transposase IS911 HTH and LZ region K07483 K07483; transposase
D NE0709 Transposase IS911 HTH and LZ region K07483 K07483; transposase
D NE0749 Transposase IS911 HTH and LZ region K07483 K07483; transposase
D NE0252 Transposase IS911 HTH and LZ region K07483 K07483; transposase
D NE1260 Transposase IS911 HTH and LZ region K07483 K07483; transposase
D NE2516 Transposase IS911 HTH and LZ region K07483 K07483; transposase
D NE2533 Transposase IS911 HTH and LZ region K07483 K07483; transposase
D NE1815 Transposase IS911 HTH and LZ region K07483 K07483; transposase
D NE1996 Transposase IS911 HTH and LZ region K07483 K07483; transposase
D NE2096 Transposase IS911 HTH and LZ region K07483 K07483; transposase
D NE2109 Transposase IS911 HTH and LZ region K07483 K07483; transposase
D NE2156 Transposase IS911 HTH and LZ region K07483 K07483; transposase
D NE2238 Transposase IS200 like K07491 rayT; REP-associated tyrosine transposase
D NE1271 Integrase, catalytic core K07497 K07497; putative transposase
D NE0451 Integrase, catalytic core K07497 K07497; putative transposase
D NE0708 Integrase, catalytic core K07497 K07497; putative transposase
D NE0155 Integrase, catalytic core K07497 K07497; putative transposase
D NE0253 Integrase, catalytic core K07497 K07497; putative transposase
D NE1261 Integrase, catalytic core K07497 K07497; putative transposase
D NE2515 Integrase, catalytic core K07497 K07497; putative transposase
D NE2532 Integrase, catalytic core K07497 K07497; putative transposase
D NE1816 Integrase, catalytic core K07497 K07497; putative transposase
D NE1995 Integrase, catalytic core K07497 K07497; putative transposase
D NE2097 Integrase, catalytic core K07497 K07497; putative transposase
D NE2108 Integrase, catalytic core K07497 K07497; putative transposase
D NE2155 Integrase, catalytic core K07497 K07497; putative transposase
C 99979 Viral proteins
C 99998 Others
D NE0434 DUF149:Conserved hypothetical protein 103 K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D NE0513 Amino acid transporter K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D NE2036 acrD4; Acriflavin resistance protein K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
C 99978 Cell growth
D NE0055 ispZ; hypothetical protein K06190 ispZ; intracellular septation protein
D NE1297 hypothetical protein K06395 spoIIIAF; stage III sporulation protein AF
D NE0236 ccrB; Site-specific recombinase K06400 spoIVCA; site-specific DNA recombinase
D NE2541 Site-specific recombinase K06400 spoIVCA; site-specific DNA recombinase
D NE1781 Peptidase family M23/M37 K22719 envC; murein hydrolase activator
C 99993 Cell motility
C 99995 Signaling proteins
D NE1028 Universal stress protein (Usp) K06149 uspA; universal stress protein A
D NE2410 cstA; Carbon starvation protein CstA K06200 cstA; carbon starvation protein
D NE2554 typA; GTP-binding elongation factor:Elongation factor Tu domain 2 K06207 typA; GTP-binding protein
D NE2334 PhoH-like protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D NE2386 Bacterial SH3 domain homologue K07184 ygiM; SH3 domain protein
D NE2248 conserved hypothetical protein K09767 yajQ; cyclic-di-GMP-binding protein
C 99992 Structural proteins
D NE1052 Outer membrane lipoprotein carrier protein LolA K03634 lolA; outer membrane lipoprotein carrier protein
D NE1828 possible lipoprotein localization protein LolB K02494 lolB; outer membrane lipoprotein LolB
D NE1422 vacJ; putative lipoprotein precursor (vacJ) transmembrane K04754 mlaA; phospholipid-binding lipoprotein MlaA
D NE1169 vacJ; possible lipoprotein precursor (vacJ) transmembrane K04754 mlaA; phospholipid-binding lipoprotein MlaA
D NE1709 putative transmembrane protein K06142 hlpA; outer membrane protein
D NE0948 LysM motif:Peptidase family M23/M37 K06194 nlpD; lipoprotein NlpD
D NE1832 hypothetical protein K07285 slp; outer membrane lipoprotein
D NE1116 Type I antifreeze protein:HlyD family secretion protein K01993 ABC-2.TX; HlyD family secretion protein
D NE1898 conserved hypothetical protein K02005 ABC.CD.TX; HlyD family secretion protein
D NE0828 HlyD family secretion protein K02005 ABC.CD.TX; HlyD family secretion protein
D NE0767 ccmE; CcmE/CycJ proteins K02197 ccmE; cytochrome c-type biogenesis protein CcmE
D NE0770 ccmH; putative cytochrome C-type biogenesis protein CcmH K02200 ccmH; cytochrome c-type biogenesis protein CcmH
D NE0771 cycH; TPR repeat K02200 ccmH; cytochrome c-type biogenesis protein CcmH
D NE0147 conserved hypothetical protein K15539 rodZ; cytoskeleton protein RodZ
C 99994 Others
D NE1744 phoU; Protein of unknown function DUF65 K02039 phoU; phosphate transport system protein
D NE2437 mdoG; periplasmic glucans biosynthesis protein K03670 mdoG; periplasmic glucans biosynthesis protein
D NE2388 cutA; CutA1 divalent ion tolerance protein K03926 cutA; periplasmic divalent cation tolerance protein
D NE1573 apaG; conserved hypothetical protein K06195 apaG; ApaG protein
D NE1945 FAD-dependent pyridine nucleotide-disulphide oxidoreductase K07222 K07222; putative flavoprotein involved in K+ transport
D NE0280 pcoB; possible copper resistance protein B precursor K07233 pcoB; copper resistance protein B
D NE1194 conserved hypothetical protein K07234 K07234; uncharacterized protein involved in response to NO
D NE1696 conserved hypothetical protein K07234 K07234; uncharacterized protein involved in response to NO
D NE1723 conserved hypothetical protein K07234 K07234; uncharacterized protein involved in response to NO
B
B 09194 Poorly characterized
C 99996 General function prediction only
D NE0698 cvpA; Colicin V production protein K03558 cvpA; membrane protein required for colicin V production
D NE1176 Putative peptidoglycan binding domain 1 K03791 K03791; putative chitinase
D NE0132 osmY; putative osmotically inducible protein Y K04065 osmY; hyperosmotically inducible periplasmic protein
D NE0129 putative lipoprotein K04065 osmY; hyperosmotically inducible periplasmic protein
D NE1151 possible sec-independent protein translocase protein TatC K06886 glbN; hemoglobin
D NE2294 Patatin K07001 K07001; NTE family protein
D NE1428 Hypothetical hesB/yadR/yfhF family K15724 erpA; iron-sulfur cluster insertion protein
D NE1450 Uncharacterized protein family UPF0051 K09014 sufB; Fe-S cluster assembly protein SufB
D NE1448 Uncharacterized protein family UPF0051 K09015 sufD; Fe-S cluster assembly protein SufD
D NE0299 conserved hypothetical protein K07038 K07038; inner membrane protein
D NE0971 phnB; conserved hypothetical protein K04750 phnB; PhnB protein
D NE0282 conserved hypothetical protein K03744 lemA; LemA protein
D NE0914 conserved hypothetical protein K03744 lemA; LemA protein
D NE1967 smg; conserved hypothetical protein K03747 smg; Smg protein
D NE0021 conserved hypothetical protein K05805 creA; CreA protein
D NE0697 possible transmembrane protein K03749 dedD; DedD protein
D NE1758 dedA; DedA family K03975 dedA; membrane-associated protein
D NE1885 DUF202 K00389 yidH; putative membrane protein
D NE0878 conserved hypothetical protein K11312 K11312; cupin 2 domain-containing protein
C 99997 Function unknown
D NE1515 Ankyrin-repeat K06867 K06867; uncharacterized protein
D NE1049 Ankyrin-repeat K06867 K06867; uncharacterized protein
D NE0915 conserved hypothetical protein K06872 K06872; uncharacterized protein
D NE0103 yyaL; putative similar to unknown proteins K06888 K06888; uncharacterized protein
D NE1027 Esterase/lipase/thioesterase family active site K06889 K06889; uncharacterized protein
D NE2161 Esterase/lipase/thioesterase family active site K06889 K06889; uncharacterized protein
D NE2214 AAA ATPase superfamily K06923 K06923; uncharacterized protein
D NE1361 putative similar to abortive phage resistance protein K06926 K06926; uncharacterized protein
D NE1042 hypothetical protein K06950 K06950; uncharacterized protein
D NE0789 conserved hypothetical protein K06992 K06992; uncharacterized protein
D NE1759 conserved hypothetical protein K07003 K07003; uncharacterized protein
D NE1875 Esterase/lipase/thioesterase family active site K07018 K07018; uncharacterized protein
D NE1289 Esterase/lipase/thioesterase family active site K07019 K07019; uncharacterized protein
D NE1377 Protein of unknown function DUF132 K07063 K07063; uncharacterized protein
D NE1622 Protein of unknown function DUF132 K07063 K07063; uncharacterized protein
D NE1075 DNA polymerase beta-like domain K07075 K07075; uncharacterized protein
D NE1535 DNA polymerase beta-like domain K07075 K07075; uncharacterized protein
D NE0467 Domain of unknown function DUF81 K07090 K07090; uncharacterized protein
D NE2566 Domain of unknown function DUF81 K07090 K07090; uncharacterized protein
D NE1888 Domain of unknown function DUF81 K07090 K07090; uncharacterized protein
D NE2570 probable transmembrane protein K07112 K07112; uncharacterized protein
D NE2034 conserved hypothetical protein K07112 K07112; uncharacterized protein
D NE2569 probable transmembrane protein K07112 K07112; uncharacterized protein
D NE0862 conserved hypothetical protein K07126 K07126; uncharacterized protein
D NE0240 hypothetical protein K07126 K07126; uncharacterized protein
D NE1878 conserved hypothetical protein K07126 K07126; uncharacterized protein
D NE1983 conserved hypothetical protein K07126 K07126; uncharacterized protein
D NE0474 conserved hypothetical protein K07133 K07133; uncharacterized protein
D NE0388 Domain of unknown function DUF37 K08998 K08998; uncharacterized protein
D NE1461 DUF192 K09005 K09005; uncharacterized protein
D NE0227 DUF186 K09117 K09117; uncharacterized protein
D NE0395 DUF167 K09131 K09131; uncharacterized protein
D NE1703 DUF190 K09137 K09137; uncharacterized protein
D NE1822 possible ORF H1620 K09144 K09144; uncharacterized protein
D NE1487 conserved hypothetical protein K09158 K09158; uncharacterized protein
D NE0167 conserved hypothetical protein K09700 K09700; uncharacterized protein
D NE1419 conserved hypothetical protein K09780 K09780; uncharacterized protein
D NE0004 conserved hypothetical protein K09790 K09790; uncharacterized protein
D NE0428 conserved hypothetical protein K09801 K09801; uncharacterized protein
D NE2104 conserved hypothetical protein K09803 K09803; uncharacterized protein
D NE0339 conserved hypothetical protein K09921 K09921; uncharacterized protein
D NE1692 conserved hypothetical protein K09922 K09922; uncharacterized protein
D NE0829 conserved hypothetical protein K09928 K09928; uncharacterized protein
D NE1283 conserved hypothetical protein K09937 K09937; uncharacterized protein
D NE2418 conserved hypothetical protein K09967 K09967; uncharacterized protein
D NE2417 conserved hypothetical protein K09967 K09967; uncharacterized protein
D NE1440 hypothetical protein K09978 K09978; uncharacterized protein
!
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: May 13, 2024