+E Transcription factors KO
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Transcription Factors - Pseudomonas aeruginosa PAO1
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D PA4120 transcriptional regulator K02508 hpaA; AraC family transcriptional regulator, 4-hydroxyphenylacetate 3-monooxygenase operon regulatory protein
D PA0416 chpD; transcriptional regulator K06599 chpD; AraC family transcriptional regulator, chemosensory pili system protein ChpD
D PA4227 pchR; transcriptional regulator PchR K12243 pchR; AraC family transcriptional regulator, transcriptional activator of the genes for pyochelin and ferripyochelin receptors
D PA0248 transcriptional regulator K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D PA0564 transcriptional regulator K18991 mtrA; AraC family transcriptional regulator, activator of mtrCDE
D PA2332 transcriptional regulator K18991 mtrA; AraC family transcriptional regulator, activator of mtrCDE
D PA1713 exsA; exoenzyme S transcriptional regulator ExsA K20968 exsA; AraC family transcriptional regulator, exoenzyme S synthesis regulatory protein ExsA
D PA3898 transcriptional regulator K07506 K07506; AraC family transcriptional regulator
D PA2696 transcriptional regulator K07506 K07506; AraC family transcriptional regulator
D PA3596 methylated-DNA--protein-cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D PA2118 ada; O6-methylguanine-DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D PA5389 cdhR; CdhR family transcriptional regulator K17736 cdhR; AraC family transcriptional regulator, carnitine catabolism transcriptional activator
D PA0893 argR; transcriptional regulator ArgR K21825 argR; AraC family transcriptional regulator, L-arginine-responsive activator
D PA5380 gbdR; protein GbdR K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator
D PA4184 transcriptional regulator K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator
C LysR family
D PA3845 transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D PA1184 transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D PA0784 transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D PA2383 transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D PA4914 transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D PA5293 transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D PA0152 pcaQ; transcriptional regulator PcaQ K02623 pcaQ; LysR family transcriptional regulator, pca operon transcriptional activator
D PA3587 metR; transcriptional regulator MetR K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D PA5344 oxyR; transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D PA4363 iciA; chromosome replication initiation inhibitor protein K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D PA2054 cynR; DNA-binding transcriptional regulator CynR K11921 cynR; LysR family transcriptional regulator, cyn operon transcriptional activator
D PA1754 cysB; transcriptional regulator CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D PA0217 transcriptional regulator K13928 mdcR; LysR family transcriptional regulator, malonate utilization transcriptional regulator
D PA2921 transcriptional regulator K14057 abgR; LysR family transcriptional regulator, regulator of abg operon
D PA1998 dhcR; transcriptional regulator DhcR K17737 dhcR; LysR family transcriptional regulator, carnitine catabolism transcriptional activator
D PA4109 ampR; transcriptional regulator AmpR K17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase
D PA2492 mexT; transcriptional regulator MexT K18297 mexT; LysR family transcriptional regulator, mexEF-oprN operon transcriptional activator
D PA2056 transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D PA1003 mvfR; transcriptional regulator MvfR K19735 mvfR; LysR family transcriptional regulator, quorum-sensing system regulator MvfR
D PA5428 transcriptional regulator K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
D PA0133 HTH-type transcriptional activator BauR K21699 bauR; LysR family transcriptional regulator, transcriptional activator for bauABCD operon
D PA5437 transcriptional regulator K21711 pycR; LysR family transcriptional regulator, putative pyruvate carboxylase regulator
D PA2510 catR; transcriptional regulator CatR K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes
D PA1853 transcriptional regulator K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
D PA0037 trpI; HTH-type transcriptional regulator TrpI K27042 trpI; LysR family transcriptional regulator, trpBA operon transcriptional activator
C DeoR family
D PA3583 glpR; glycerol-3-phosphate regulon repressor K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D PA1490 transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
C LacI family
D PA1949 rbsR; ribose operon repressor RbsR K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D PA2259 ptxS; transcriptional regulator PtxS K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor
D PA3563 fruR; FruR family transcriptional regulator K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D PA2320 gntR; GntR family transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
C GntR family
D PA3381 transcriptional regulator K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein
D PA5105 hutC; histidine utilization repressor HutC K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D PA3757 transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D PA2299 transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D PA4769 transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D PA0120 transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D PA5356 glcC; DNA-binding transcriptional regulator GlcC K11474 glcC; GntR family transcriptional regulator, glc operon transcriptional activator
D PA0268 transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D PA5431 transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D PA4165 transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D PA4906 transcriptional regulator K11475 vanR; GntR family transcriptional regulator, vanillate catabolism transcriptional regulator
C TetR/AcrR family
D PA5374 betI; BetI family transcriptional regulator K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D PA0167 transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator
D PA0436 transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator
D PA1504 transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator
D PA1864 transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator
D PA2196 transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D PA0839 transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D PA1241 transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D PA2766 transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D PA4831 transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D PA3678 transcriptional regulator K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor
D PA2020 transcriptional regulator K18129 mexZ; TetR/AcrR family transcriptional regulator, mexXY operon repressor
D PA3721 nalC; transcriptional regulator K18130 nalC; TetR/AcrR family transcriptional regulator, transcriptional repressor NalC
D PA3574 nalD; transcriptional regulator K18135 nalD; TetR/AcrR family transcriptional regulator, repressor of the mexAB-oprM multidrug resistance operon
D PA4600 nfxB; transcriptional regulator NfxB K18294 nfxB; TetR/AcrR family transcriptional regulator, mexCD-oprJ operon repressor
D PA4890 desT; transcriptional regulator K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
D PA2885 atuR; atu genes repressor K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator
C Lrp/AsnC family
D PA2577 transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PA5308 lrp; leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PA3965 transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PA4508 transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PA4784 transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PA2246 bkdR; Bkd operon transcriptional regulator BkdR K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D PA2028 transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
C LuxR family
D PA1430 lasR; transcriptional regulator LasR K18304 lasR; LuxR family transcriptional regulator, quorum-sensing system regulator LasR
D PA3477 rhlR; transcriptional regulator RhlR K18099 rhlR; LuxR family transcriptional regulator, quorum-sensing system regulator RhlR
D PA1136 transcriptional regulator K18098 bjaR1; LuxR family transcriptional regulator, quorum-sensing system regulator BjaR1
D PA1759 transcriptional regulator K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
D PA3921 transcriptional regulator K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
C MarR family
D PA0253 transcriptional regulator K03712 marR; MarR family transcriptional regulator, multiple antibiotic resistance protein MarR
D PA3341 transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D PA0424 mexR; multidrug resistance operon repressor MexR K18131 mexR; MarR family transcriptional regulator, repressor of the mexAB-oprM multidrug resistance operon
D PA1603 transcriptional regulator K22296 nicR; MarR family transcriptional regulator, lower aerobic nicotinate degradation pathway regulator
D PA2849 ohrR; transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D PA2825 ospR; transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D PA4778 cueR; protein CueR K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D PA2273 soxR; redox-sensitive transcriptional activator SoxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
D PA4659 transcriptional regulator K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator
C Fur family
D PA4764 fur; ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D PA2384 hypothetical protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D PA5499 np20; transcriptional regulator K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
C IclR family
D PA0236 transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D PA0155 pcaR; transcriptional regulator PcaR K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
C CRP/FNR family
D PA0652 vfr; cAMP-regulatory protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D PA0275 transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D PA1544 anr; transcriptional regulator Anr K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D PA0527 dnr; transcriptional regulator Dnr K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator
C Rrf2 family
D PA3815 iscR; HTH-type transcriptional regulator K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
C ArsR family
D PA2277 arsR; ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
C XRE family
C PadR family
C Other families
D PA5438 transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D PA3184 HTH-type transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D PA4280 birA; biotin--protein ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D PA4853 fis; Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D PA1097 fleQ; transcriptional regulator FleQ K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D PA4147 acoR; transcriptional regulator AcoR K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D PA4021 transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D PA2359 transcriptional regulator K11917 sfa3; sigma-54 dependent transcriptional regulator
D PA1663 transcriptional regulator K11914 sfa2; sigma-54 dependent transcriptional regulator
D PA2665 anaerobic nitric oxide reductase transcriptional regulator K12266 norR; anaerobic nitric oxide reductase transcription regulator
D PA1050 hypothetical protein K02647 cdaR; carbohydrate diacid regulator
D PA1196 transcriptional regulator K06714 rocR; arginine utilization regulatory protein
D PA0487 molybdenum transport regulator K02019 modE; molybdate transport system regulatory protein
D PA3864 dauR; transcriptional regulator K21829 dauR; D-arginine utilization repressor
D PA2785 hypothetical protein K07727 K07727; putative transcriptional regulator
D PA5403 transcriptional regulator K07727 K07727; putative transcriptional regulator
D PA4077 transcriptional regulator K07729 K07729; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
D PA0782 putA; bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
C Others
D PA3391 nosR; regulatory protein NosR K19339 nosR; NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator
D PA0857 bolA; morphogene protein BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D PA5562 spoOJ; chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D PA0873 phhR; transcriptional regulator PhhR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D PA2449 transcriptional regulator K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D PA1009 hypothetical protein K03567 gcvR; glycine cleavage system transcriptional repressor
D PA5274 rnk; nucleoside diphosphate kinase regulator K06140 rnk; regulator of nucleoside diphosphate kinase
D PA0403 pyrR; bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D PA4182 hypothetical protein K07734 paiB; transcriptional regulator
D PA0405 hypothetical protein K07735 algH; putative transcriptional regulator
D PA4723 dksA; suppressor protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D PA5536 hypothetical protein K06204 dksA; RNA polymerase-binding transcription factor
D PA4057 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D PA4581 rtcR; transcriptional regulator RtcR K14414 rtcR; transcriptional regulatory protein RtcR
D PA4421 cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 5, 2024
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Classification taken and modified from TRANSFAC 7.0