+D
#
Transfer RNA Biogenesis - Pyrococcus furiosus DSM 3638
%
!
AEukaryotic type
B 5'processing factors
C Ribonucrease P
D PF1816 hypothetical protein K03538 POP4; ribonuclease P protein subunit POP4 [EC:3.1.26.5]
D PF1378 hypothetical protein K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5]
D PF1914 hypothetical protein K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5]
D PF1613 hypothetical protein K03540 RPR2; ribonuclease P protein subunit RPR2 [EC:3.1.26.5]
B 3'processing and CCA adding factors
C 3'processing factors
D PF1345 arylsulfatase, putative K00784 rnz; ribonuclease Z [EC:3.1.26.11]
C CCA adding factors
B tRNA spricing factors
C tRNA splicing endonuclease complex
C tRNA splicing ligase complex
D PF1615 hypothetical protein K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
D PF1552 hypothetical protein K24956 ZBTB8OS; protein archease
C Other tRNA splicing factors
B tRNA transport factors
C tRNA export factors
D PF1375 translation elongation factor eF-1, subunit alpha (tuf) K03231 EEF1A; elongation factor 1-alpha
C tRNA import factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D PF1753 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PF1293 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D PF1096 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D PF0890 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D PF1030 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D PF1380 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D PF0869 aspartyl tRNA synthetase K22503 DARS1; aspartyl-tRNA synthetase [EC:6.1.1.12]
C Other AARSs
D PF0270 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PF0086 partial alanyl-tRNA synthetase matches COOH terminus K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PF0185 partial alanyl-tRNA synthetase matches COOH terminus half K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PF0428 partial alanyl-tRNA synthetase matches COOH terminus K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PF0155 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D PF1951 partial asparaginyl-tRNA synthetase matches COOH terminus K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D PF1627 glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D PF1351 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D PF1204 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D PF1024 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D PF0290 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D PF0264 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D PF0989 phenylalanyl-tRNA synthetase, alpha-subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D PF0990 phenylalanyl-tRNA synthetase beta-chain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D PF0862 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D PF0241 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C Trans-editing factors
D PF1982 hypothetical protein K09716 dtdA; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
C AARS associated factors
B tRNA modification factors
C Deaminases
C Dihydorouridine synthases
C Methylthiotransferase
D PF1912 hypothetical protein K15865 CDKAL1; threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:2.8.4.5]
C Methyltransferases
D PF1871 tRNA (guanine-26,n2-n2) methyltransferase K00555 TRMT1; tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase [EC:2.1.1.215 2.1.1.216]
D PF0089 met-10+ protein K15429 TRM5; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D PF1415 met-10+ protein K15429 TRM5; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D PF1896 l-isoaspartyl protein carboxyl methyltransferase K07442 TRM61; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit [EC:2.1.1.219 2.1.1.220]
D PF1718 hypothetical protein K15449 TYW1; tRNA wybutosine-synthesizing protein 1 [EC:4.1.3.44]
D PF0500 met-10+ protein K07055 TRM12; tRNA wybutosine-synthesizing protein 2 [EC:2.5.1.114]
D PF1098 hypothetical protein K15450 TYW3; tRNA wybutosine-synthesizing protein 3 [EC:2.1.1.282]
D PF2034 hypothetical protein K15450 TYW3; tRNA wybutosine-synthesizing protein 3 [EC:2.1.1.282]
C Psudouridine synthases
D PF0918 putative tRNA pseudouridine synthase a K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D PF1555 hypothetical protein K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D PF1139 hypothetical protein K07583 PUS10; tRNA pseudouridine synthase 10 [EC:5.4.99.25]
C Thiolation factors
C KEOPS/EKC complex
D PF0473 o-sialoglycoprotein endopeptidase K08851 TP53RK; TP53 regulating kinase and related kinases [EC:2.7.11.1]
D PF0172 o-sialoglycoprotein endopeptidase K01409 OSGEP; N6-L-threonylcarbamoyladenine synthase [EC:2.3.1.234]
C Elongator complex
D PF1901 oxygen-independent coproporphyrinogen III oxidase K07739 ELP3; elongator complex protein 3 (tRNA carboxymethyluridine synthase) [EC:2.3.1.311]
C Elongator related proteins
C Other tRNA modification factors
D PF0306 sua5 superfamily-related protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D PF1925 hypothetical protein K06963 TAN1; tRNA acetyltransferase TAN1
D PF1958 hypothetical protein K06963 TAN1; tRNA acetyltransferase TAN1
B tRNA degradation factors
C TRAMP complex
C Rapid tRNA decay (RTD) pathway factors
C Other tRNA degradation factors
#
AProkaryotic type
B 5'processing factors
C Ribonucrease P
D PF_s004 RNase P RNA K01978 rnpB; M1 RNA
D PF1880 mRNA 3'-end processing factor homolog K09006 K09006; RNA-free ribonuclease P [EC:3.1.26.5]
B 3'processing and CCA adding factors
C 3'processing factors
D PF1345 arylsulfatase, putative K00784 rnz; ribonuclease Z [EC:3.1.26.11]
C CCA adding factors
D PF0026 tRNA nucleotidyltransferase (cca) K07558 K07558; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72]
B tRNA spricing factors
C tRNA splicing endonucleases
D PF0266 putative tRNA-intron endonuclease K01170 endA; tRNA-intron endonuclease, archaea type [EC:4.6.1.16]
C tRNA splicing ligases
D PF1615 hypothetical protein K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
C Other tRNA splicing factors
D PF0027 putative integral membrane transport protein K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
D PF0083 hypothetical protein K07559 kptA; putative RNA 2'-phosphotransferase [EC:2.7.1.-]
B tRNA transport factors
C tRNA export factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D PF0890 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D PF0135 lysyl-tRNA synthetase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6]
D PF1293 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
C Other AARSs
D PF0862 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D PF0241 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D PF1351 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D PF1096 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D PF0270 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PF0086 partial alanyl-tRNA synthetase matches COOH terminus K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PF0185 partial alanyl-tRNA synthetase matches COOH terminus half K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PF0428 partial alanyl-tRNA synthetase matches COOH terminus K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PF0290 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D PF1030 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D PF1204 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D PF1024 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D PF1753 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PF1380 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D PF0989 phenylalanyl-tRNA synthetase, alpha-subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D PF0990 phenylalanyl-tRNA synthetase beta-chain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D PF0264 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D PF0155 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D PF1951 partial asparaginyl-tRNA synthetase matches COOH terminus K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
C Trans-editing factors
D PF1982 hypothetical protein K09716 dtdA; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
B tRNA modification factors
C Deaminases
C Dihydorouridine synthases
C Methylthiotransferases
C Methyltransferases
D PF1172 RNA methyltransferase K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35]
D PF1403 hypothetical protein K16317 trmY; tRNA (pseudouridine54-N1)-methyltransferase [EC:2.1.1.257]
D PF1257 putative nucleolar protein III (nol1-nop2-sun family) K22901 trm4; tRNA (cytosine40_48-C5)-methyltransferase [EC:2.1.1.-]
D PF0678 hypothetical protein K15566 trm10; tRNA (adenine9-N1/guanine9-N1)-methyltransferase [EC:2.1.1.218 2.1.1.221]
D PF1002 hypothetical protein K16318 trm14; tRNA (guanine6-N2)-methyltransferase [EC:2.1.1.256]
D PF0400 hypothetical protein K07446 trm-G10; tRNA (guanine10-N2)-dimethyltransferase [EC:2.1.1.213]
D PF0461 hypothetical protein K07254 atrm56; tRNA (cytidine56-2'-O)-methyltransferase [EC:2.1.1.206]
D PF1553 putative nucleolar protein I (nol1-nop2-sun family) K22446 K22446; tRNA (cytosine49-C5)-methyltransferase [EC:2.1.1.-]
C Psudouridine synthases
D PF0918 putative tRNA pseudouridine synthase a K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D PF1555 hypothetical protein K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
C Thiolation factors
D PF0273 n-type ATP pyrophosphatase superfamily K21947 ttuA; tRNA-5-methyluridine54 2-sulfurtransferase [EC:2.8.1.15]
C KEOPS/EKC complex
D PF0473 o-sialoglycoprotein endopeptidase K08851 TP53RK; TP53 regulating kinase and related kinases [EC:2.7.11.1]
D PF0172 o-sialoglycoprotein endopeptidase K01409 OSGEP; N6-L-threonylcarbamoyladenine synthase [EC:2.3.1.234]
D PF0523 hypothetical protein K09119 cgi121; KEOPS complex subunit Cgi121
D PF2011 hypothetical protein K09741 pcc1; KEOPS complex subunit Pcc1
C Other tRNA modification factors
D PF0048 succinoglycan biosynthesis regulator K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D PF0219 putative 6-pyruvoyl tetrahydrobiopterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D PF1277 hypothetical protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D PF1046 queuine trna-ribosyltransferase K18779 tgtA; 7-cyano-7-deazaguanine tRNA-ribosyltransferase [EC:2.4.2.48]
D PF1288 putative thiamin biosynthesis protein thiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D PF1487 putative thiamin biosynthesis protein thiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D PF1835 putative thiamin biosynthesis protein thiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D PF1855 putative transcription-associated protein TFIIS K06932 tiaS; tRNA(Ile2)-agmatinylcytidine synthase [EC:6.3.4.22]
D PF0504 DNA helicase K06957 tmcA; tRNA(Met) cytidine acetyltransferase [EC:2.3.1.193]
D PF0306 sua5 superfamily-related protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
B tRNA degradation factors
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: February 29, 2024