+E
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Transcription Machinery - Pediculus humanus corporis (human body louse)</h2>
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A<b>Eukaryotic type</b>
B  RNA polymerase II system
C    RNA polymerase II
D      Core subunits
E        Phum_PHUM268230 hypothetical protein	K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] 
E        Phum_PHUM204950 DNA-directed RNA polymerase II 135 kDa polypeptide, putative	K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] 
E        Phum_PHUM249080 DNA-directed RNA polymerase II 33 kDa polypeptide, putative	K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3 
E        Phum_PHUM011520 DNA-directed RNA polymerase II subunit J, putative	K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11 
D      Pol II specific subunits
E        Phum_PHUM569720 DNA-directed RNA polymerase II 15.1 kDa polypeptide, putative	K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9 
D      Pol I, II, III common subunits
E        Phum_PHUM414840 DNA-directed RNA polymerase II 23 kDa polypeptide, putative	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        Phum_PHUM150050 DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide, putative	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        Phum_PHUM180020 DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide, putative	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        Phum_PHUM290480 DNA-directed RNA polymerases I, II, and III 7.0 kDa polypeptide, putative	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
D      Pol IV and V specific subunits
C    Basal transcription factors
D      TFIIA
E        Phum_PHUM435190 transcription initiation factor IIA alpha chain TFIIA p30, putative	K03122 TFIIA1; transcription initiation factor TFIIA large subunit 
E        Phum_PHUM492470 transcription initiation factor IIA gamma chain, putative	K03123 TFIIA2; transcription initiation factor TFIIA small subunit 
D      TFIIB
E        Phum_PHUM626400 transcription initiation factor iib, putative	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFIID
E        Phum_PHUM345780 trf2 protein, putative	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        Phum_PHUM375280 trf2 protein, putative	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        Phum_PHUM533080 trf2 protein, putative	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        Phum_PHUM537430 transcription initiation factor TFIID subunit, putative	K03125 TAF1; transcription initiation factor TFIID subunit 1 [EC:2.3.1.48 2.7.11.1] 
E        Phum_PHUM024110 transcription initiation factor TFIID subunit, putative	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        Phum_PHUM409440 hypothetical protein	K14650 TAF3; transcription initiation factor TFIID subunit 3 
E        Phum_PHUM537630 transcription initiation factor TFIID subunit, putative	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        Phum_PHUM362800 WD-repeat protein, putative	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        Phum_PHUM147630 transcription initiation factor TFIID subunit, putative	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        Phum_PHUM247940 hypothetical protein	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        Phum_PHUM376110 transcription initiation factor TFIID subunit, putative	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        Phum_PHUM360470 transcription initiation factor TFIID subunit, putative	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        Phum_PHUM195140 transcription initiation factor TFIID subunit, putative	K14649 TAF8; transcription initiation factor TFIID subunit 8 
E        Phum_PHUM076550 transcription initiation factor TFIID subunit, putative	K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
E        Phum_PHUM179220 transcription initiation factor TFIID subunit, putative	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        Phum_PHUM581970 transcription initiation factor TFIID subunit, putative	K03135 TAF11; transcription initiation factor TFIID subunit 11 
E        Phum_PHUM507150 transcription initiation factor TFIID subunit, putative	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        Phum_PHUM599880 transcription initiation factor TFIID subunit, putative	K03127 TAF13; transcription initiation factor TFIID subunit 13 
D      TFIIE
E        Phum_PHUM228670 hypothetical protein	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
E        Phum_PHUM501050 transcription initiation factor IIE subunit beta, putative	K03137 TFIIE2; transcription initiation factor TFIIE subunit beta 
D      TFIIF
E        Phum_PHUM493990 transcription initiation factor IIF alpha subunit, putative	K03138 TFIIF1; transcription initiation factor TFIIF subunit alpha 
E        Phum_PHUM079820 hypothetical protein	K03139 TFIIF2; transcription initiation factor TFIIF subunit beta [EC:5.6.2.-] 
D      TFIIH
E        Phum_PHUM086680 TFIIH basal transcription factor complex subunit, putative	K03141 TFIIH1; transcription initiation factor TFIIH subunit 1 
E        Phum_PHUM169850 TFIIH basal transcription factor complex p44 subunit, putative	K03142 TFIIH2; transcription initiation factor TFIIH subunit 2 
E        Phum_PHUM518520 TFIIH basal transcription factor complex p52 subunit, putative	K03144 TFIIH4; transcription initiation factor TFIIH subunit 4 
E        Phum_PHUM087570 DNA excision repair protein haywire, putative	K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] 
E        Phum_PHUM583990 TFIIH basal transcription factor complex helicase subunit, putative	K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] 
E        Phum_PHUM268950 TFIIH basal transcription factor complex TTD-A subunit, putative	K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit 
E        Phum_PHUM399490 mitogen-activated protein kinase ERK-A, putative	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
E        Phum_PHUM037380 CDK-activating kinase assembly factor MAT1, putative	K10842 MNAT1; CDK-activating kinase assembly factor MAT1 
E        Phum_PHUM009100 cyclin H, putative	K06634 CCNH; cyclin H 
C    Mediator complex
D      Head
E        Phum_PHUM515150 hypothetical protein	K15128 MED6; mediator of RNA polymerase II transcription subunit 6 
E        Phum_PHUM504900 hypothetical protein	K15129 MED8; mediator of RNA polymerase II transcription subunit 8 
E        Phum_PHUM148110 hypothetical protein	K15131 MED11; mediator of RNA polymerase II transcription subunit 11 
E        Phum_PHUM350940 CRSP complex subunit, putative	K15133 MED17; mediator of RNA polymerase II transcription subunit 17 
E        Phum_PHUM210840 hypothetical protein	K15135 MED18; mediator of RNA polymerase II transcription subunit 18 
E        Phum_PHUM250710 hypothetical protein	K15137 MED19; mediator of RNA polymerase II transcription subunit 19 
E        Phum_PHUM387850 mediator complex subunit, putative	K13528 MED20; mediator of RNA polymerase II transcription subunit 20 
E        Phum_PHUM479070 Surfeit locus protein, putative	K15139 MED22; mediator of RNA polymerase II transcription subunit 22 
E        Phum_PHUM511740 mediator of RNA polymerase II transcription subunit, putative	K15141 MED28; mediator of RNA polymerase II transcription subunit 28 
E        Phum_PHUM298000 hypothetical protein	K15142 MED29; mediator of RNA polymerase II transcription subunit 29 
E        Phum_PHUM208360 hypothetical protein	K15143 MED30; mediator of RNA polymerase II transcription subunit 30 
D      Middle
E        Phum_PHUM614070 hypothetical protein	K15144 MED1; mediator of RNA polymerase II transcription subunit 1 
E        Phum_PHUM129430 mediator complex subunit, putative	K15146 MED4; mediator of RNA polymerase II transcription subunit 4 
E        Phum_PHUM055730 Cofactor required for Sp1 transcriptional activation subunit, putative	K15148 MED7; mediator of RNA polymerase II transcription subunit 7 
E        Phum_PHUM405840 hypothetical protein	K15149 MED9; mediator of RNA polymerase II transcription subunit 9 
E        Phum_PHUM157780 nut2, putative	K15151 MED10; mediator of RNA polymerase II transcription subunit 10 
E        Phum_PHUM607820 mediator of RNA polymerase II transcription subunit, putative	K15152 MED21; mediator of RNA polymerase II transcription subunit 21 
E        Phum_PHUM609150 mediator of RNA polymerase II transcription subunit, putative	K15153 MED31; mediator of RNA polymerase II transcription subunit 31 
D      Tail
E        Phum_PHUM128490 CRSP complex subunit, putative	K15156 MED14; mediator of RNA polymerase II transcription subunit 14 
E        Phum_PHUM249090 hypothetical protein	K15157 MED15; mediator of RNA polymerase II transcription subunit 15 
E        Phum_PHUM550200 Thyroid hormone receptor-associated protein complex 95 kDa component, putative	K15159 MED16; mediator of RNA polymerase II transcription subunit 16 
E        Phum_PHUM550190 hypothetical protein	K15159 MED16; mediator of RNA polymerase II transcription subunit 16 
D      CDK-module
E        Phum_PHUM298010 mitogen-activated protein kinase ERK-A, putative	K02208 CDK8_11; cyclin-dependent kinase 8/11 [EC:2.7.11.22 2.7.11.23] 
E        Phum_PHUM464850 G1/S-specific cyclin-C, putative	K15161 CCNC; cyclin-C 
E        Phum_PHUM489830 mediator of RNA polymerase II transcription subunit, putative	K15162 MED12; mediator of RNA polymerase II transcription subunit 12 
E        Phum_PHUM174820 Thyroid hormone receptor-associated protein, putative	K15164 MED13; mediator of RNA polymerase II transcription subunit 13 
D      Other mediators
E        Phum_PHUM474940 CRSP complex subunit, putative	K15166 MED23; mediator of RNA polymerase II transcription subunit 23 
E        Phum_PHUM004560 Thyroid hormone receptor-associated protein complex 100 kDa component, putative	K15167 MED24; mediator of RNA polymerase II transcription subunit 24 
E        Phum_PHUM261610 transcription factor, putative	K15168 MED25; mediator of RNA polymerase II transcription subunit 25 
E        Phum_PHUM440680 CRSP complex subunit, putative	K15170 MED27; mediator of RNA polymerase II transcription subunit 27 
C    Coactivators
D      SAGA/TFTC/STAGA complex
E        Phum_PHUM067370 hypothetical protein	K06062 PCAF; histone acetyltransferase [EC:2.3.1.48] 
E        Phum_PHUM249010 transformation/transcription domain-associated protein, putative	K08874 TRRAP; transformation/transcription domain-associated protein 
E        Phum_PHUM540500 transcription initiation factor supt3, putative	K11313 SUPT3H; transcription initiation protein SPT3 
E        Phum_PHUM193230 transcriptional adaptor, putative	K11314 TADA2A; transcriptional adapter 2-alpha 
E        Phum_PHUM333960 transcriptional adapter, putative	K15127 TADA2B; transcriptional adapter 2-beta 
E        Phum_PHUM252230 hypothetical protein	K11315 TADA3; transcriptional adapter 3 
E        Phum_PHUM042680 hypothetical protein	K11317 TADA1; transcriptional adapter 1 
E        Phum_PHUM024110 transcription initiation factor TFIID subunit, putative	K03128 TAF2; transcription initiation factor TFIID subunit 2 
E        Phum_PHUM537630 transcription initiation factor TFIID subunit, putative	K03129 TAF4; transcription initiation factor TFIID subunit 4 
E        Phum_PHUM362800 WD-repeat protein, putative	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        Phum_PHUM147630 transcription initiation factor TFIID subunit, putative	K03130 TAF5; transcription initiation factor TFIID subunit 5 
E        Phum_PHUM247940 hypothetical protein	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        Phum_PHUM376110 transcription initiation factor TFIID subunit, putative	K03131 TAF6; transcription initiation factor TFIID subunit 6 
E        Phum_PHUM360470 transcription initiation factor TFIID subunit, putative	K03132 TAF7; transcription initiation factor TFIID subunit 7 
E        Phum_PHUM076550 transcription initiation factor TFIID subunit, putative	K03133 TAF9B; transcription initiation factor TFIID subunit 9B 
E        Phum_PHUM179220 transcription initiation factor TFIID subunit, putative	K03134 TAF10; transcription initiation factor TFIID subunit 10 
E        Phum_PHUM507150 transcription initiation factor TFIID subunit, putative	K03126 TAF12; transcription initiation factor TFIID subunit 12 
E        Phum_PHUM031270 hypothetical protein	K11363 SGF11; SAGA-associated factor 11 
E        Phum_PHUM037540 hypothetical protein	K11364 SGF29; SAGA-associated factor 29 
E        Phum_PHUM004790 hypothetical protein	K11318 ATXN7; ataxin-7 
E        Phum_PHUM370270 Chromo domain protein, putative	K11367 CHD1; chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-] 
E        Phum_PHUM074960 ubiquitin carboxyl-terminal hydrolase, putative	K11366 USP22_27_51; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] 
E        Phum_PHUM449060 Splicing factor 3B subunit, putative	K12830 SF3B3; splicing factor 3B subunit 3 
D      BAF/PBAF complex
E        Phum_PHUM105990 hypothetical protein	K11647 SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-] 
E        Phum_PHUM574570 Homeotic gene regulator, putative	K11647 SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-] 
E        Phum_PHUM217130 snf5, putative	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
E        Phum_PHUM516080 hypothetical protein	K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C 
E        Phum_PHUM523430 brg-1 associated factor, putative	K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D 
E        Phum_PHUM055050 hypothetical protein	K11651 SMARCE1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 
E        Phum_PHUM430440 Actin-5C	K05692 ACTB_G1; actin beta/gamma 1 
E        Phum_PHUM407500 hypothetical protein	K11652 ACTL6B; actin-like protein 6B 
E        Phum_PHUM080380 trithorax group protein osa, putative	K11653 ARID1; AT-rich interactive domain-containing protein 1 
E        Phum_PHUM060660 hypothetical protein	K11765 ARID2; AT-rich interactive domain-containing protein 2 
E        Phum_PHUM244090 hypothetical protein	K11757 PBRM1; protein polybromo-1 
D      SWI/SNF complex
E        Phum_PHUM217130 snf5, putative	K11648 SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 
D      RSC complex
D      Others
E        Phum_PHUM582380 ccar1, putative	K25827 CCAR1; cell division cycle and apoptosis regulator protein 1 
C    Other transcription-related factors
D      Transcription elongation factors
E        Phum_PHUM426350 transcription elongation factor S-II, putative	K03145 TFIIS; transcription elongation factor S-II 
E        Phum_PHUM012550 transcription elongation factor SPT4, putative	K15171 SUPT4H1; transcription elongation factor SPT4 
E        Phum_PHUM411920 transcription elongation factor SPT5, putative	K15172 SUPT5H; transcription elongation factor SPT5 
E        Phum_PHUM116720 transcription elongation factor SPT6, putative	K11292 SUPT6H; transcription elongation factor SPT6 
D      Transcription termination factor
E        Phum_PHUM561080 helicase, putative	K15173 TTF2; transcription termination factor 2 [EC:5.6.2.-] 
E        Phum_PHUM005980 hypothetical protein	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
E        Phum_PHUM509470 Cleavage and polyadenylation specificity factor 160 kDa subunit, putative	K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 
E        Phum_PHUM126840 Cleavage and polyadenylation specificity factor 73 kDa subunit, putative	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        Phum_PHUM519380 Cleavage and polyadenylation specificity factor 30 kDa subunit, putative	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        Phum_PHUM570660 serine/threonine-protein phosphatase PP-V, putative	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        Phum_PHUM215490 serine/threonine-protein phosphatase 4 catalytic subunit, putative	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        Phum_PHUM369800 Symplekin, putative	K06100 SYMPK; symplekin 
E        Phum_PHUM577710 protein SSU72, putative	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
E        Phum_PHUM256920 5'-3' exoribonuclease, putative	K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] 
E        Phum_PHUM294430 hypothetical protein	K15559 RTT103; regulator of Ty1 transposition protein 103 
E        Phum_PHUM487590 Hrp65 protein, putative	K13219 SFPQ; splicing factor, proline- and glutamine-rich 
E        Phum_PHUM600390 hypothetical protein	K15560 NRD1; protein NRD1 
E        Phum_PHUM581480 peptidyl-prolyl cis-trans isomerase NIMA-interacting, putative	K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8] 
D      PAF1 complex
E        Phum_PHUM241370 RNA polymerase-associated protein, putative	K15174 PAF1; RNA polymerase II-associated factor 1 
E        Phum_PHUM356390 parafibromin, putative	K15175 CDC73; parafibromin 
E        Phum_PHUM434900 tpr repeat nuclear phosphoprotein, putative	K15176 CTR9; RNA polymerase-associated protein CTR9 
E        Phum_PHUM449610 RNA polymerase-associated protein LEO1, putative	K15177 LEO1; RNA polymerase-associated protein LEO1 
E        Phum_PHUM164700 RNA polymerase-associated protein RTF1, putative	K15178 RTF1; RNA polymerase-associated protein RTF1 
D      NELF complex
E        Phum_PHUM434080 Negative elongation factor A, putative	K15179 WHSC2; negative elongation factor A 
E        Phum_PHUM125770 hypothetical protein	K15180 COBRA1; negative elongation factor B 
E        Phum_PHUM539310 Negative elongation factor D, putative	K15181 TH1L; negative elongation factor C/D 
E        Phum_PHUM616130 Negative elongation factor E, putative	K15182 RDBP; negative elongation factor E 
D      Super elongation complex (SEC)
E        Phum_PHUM019140 hypothetical protein	K15183 ELL; RNA polymerase II elongation factor ELL 
E        Phum_PHUM497540 hypothetical protein	K15186 EAF; ELL-associated factor 
E        Phum_PHUM307220 Neurofilament triplet M protein, putative	K15187 MLLT1_3; YEATS domain-containing protein 1/3 
E        Phum_PHUM065490 cyclin t, putative	K15188 CCNT; cyclin T 
E        Phum_PHUM500570 mitogen-activated protein kinase ERK-A, putative	K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23] 
D      Little elongation complex (LEC)
E        Phum_PHUM019140 hypothetical protein	K15183 ELL; RNA polymerase II elongation factor ELL 
D      Brd4/P-TEFb complex
E        Phum_PHUM065490 cyclin t, putative	K15188 CCNT; cyclin T 
E        Phum_PHUM500570 mitogen-activated protein kinase ERK-A, putative	K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23] 
D      BUR kinase complex
D      CTDK-I complex
D      7SK RNP complex
E        Phum_PHUM450560 hypothetical protein	K15189 HEXIM1_2; protein HEXIM1/2 
E        Phum_PHUM045180 hypothetical protein	K15190 MEPCE; 7SK snRNA methylphosphate capping enzyme [EC:2.1.1.-] 
E        Phum_PHUM596880 lupus la ribonucleoprotein, putative	K15191 LARP7; La-related protein 7 
E        Phum_PHUM065490 cyclin t, putative	K15188 CCNT; cyclin T 
E        Phum_PHUM500570 mitogen-activated protein kinase ERK-A, putative	K02211 CDK9; cyclin-dependent kinase 9 [EC:2.7.11.22 2.7.11.23] 
D      DBIRD complex
D      Others
E        Phum_PHUM422980 TATA-binding protein-associated factor, putative	K15192 BTAF1; TATA-binding protein-associated factor [EC:5.6.2.-] 
E        Phum_PHUM323600 Negative cofactor 2 beta, putative	K21751 DR1; down-regulator of transcription 1 
E        Phum_PHUM509040 negative cofactor 2 transcriptional co-repressor, putative	K21752 DRAP1; Dr1-associated corepressor 
E        Phum_PHUM055700 Non-muscle caldesmon, putative	K15193 SPTY2D1; protein SPT2 
E        Phum_PHUM378040 RNA polymerase II ctd phosphatase, putative	K15732 CTDP1; RNA polymerase II subunit A C-terminal domain phosphatase [EC:3.1.3.16] 
E        Phum_PHUM249120 nuclear lim interactor-interacting factor, putative	K15731 CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase [EC:3.1.3.16] 
E        Phum_PHUM465390 hypothetical protein	K17498 SPN1; transcription factor SPN1 
E        Phum_PHUM507450 hypothetical protein	K17494 CSRNP; cysteine/serine-rich nuclear protein 
E        Phum_PHUM243920 hypothetical protein	K20826 RPAP1; RNA polymerase II-associated protein 1 
E        Phum_PHUM473830 hypothetical protein	K20827 RPAP2; RNA polymerase II-associated protein 2 [EC:3.1.3.16] 
E        Phum_PHUM308560 heat shock protein 70 HSP70 interacting protein, putative	K23002 RPAP3; RNA polymerase II-associated protein 3 
E        Phum_PHUM488450 Cyclin-K, putative	K23326 CCNK; cyclin K 
E        Phum_PHUM387380 hypothetical protein	K24104 GPN; GPN-loop GTPase 
E        Phum_PHUM140120 hypothetical protein	K24104 GPN; GPN-loop GTPase 
E        Phum_PHUM219240 XPA-binding protein, putative	K24104 GPN; GPN-loop GTPase 
B  RNA polymerase III system
C    RNA polymerase III
D      Core subunits
E        Phum_PHUM369790 DNA-directed RNA polymerase III largest subunit, putative	K03018 RPC1; DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6] 
E        Phum_PHUM515130 DNA-directed RNA polymerase I 40 kDa polypeptide, putative	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        Phum_PHUM614740 DNA-directed RNA polymerase I 16 kD polypeptide, putative	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol III specific subunits
E        Phum_PHUM105740 hypothetical protein	K03023 RPC3; DNA-directed RNA polymerase III subunit RPC3 
E        Phum_PHUM125420 hypothetical protein	K03026 RPC4; DNA-directed RNA polymerase III subunit RPC4 
E        Phum_PHUM540970 Titin, putative	K14721 RPC5; DNA-directed RNA polymerase III subunit RPC5 
E        Phum_PHUM429300 DNA-directed RNA polymerases III 80 kDa polypeptide, putative	K14721 RPC5; DNA-directed RNA polymerase III subunit RPC5 
E        Phum_PHUM546030 DNA-directed RNA polymerase III subunit F, putative	K03025 RPC6; DNA-directed RNA polymerase III subunit RPC6 
E        Phum_PHUM357550 DNA-directed RNA polymerase III subunit G, putative	K03024 RPC7; DNA-directed RNA polymerase III subunit RPC7 
E        Phum_PHUM041780 DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide, putative	K03022 RPC8; DNA-directed RNA polymerase III subunit RPC8 
E        Phum_PHUM319010 hypothetical protein	K25304 RPC9; DNA-directed RNA polymerase III subunit RPC9 
E        Phum_PHUM253550 DNA-directed RNA polymerases III 12.5 kDa polypeptide, putative	K03019 RPC11; DNA-directed RNA polymerase III subunit RPC11 
D      Pol I, II, III common subunits
E        Phum_PHUM414840 DNA-directed RNA polymerase II 23 kDa polypeptide, putative	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        Phum_PHUM150050 DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide, putative	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        Phum_PHUM180020 DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide, putative	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        Phum_PHUM290480 DNA-directed RNA polymerases I, II, and III 7.0 kDa polypeptide, putative	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
C    Basal transcription factors
D      TFIIIA
E        Phum_PHUM451220 zinc finger protein, putative	K09191 GTF3A; general transcription factor IIIA 
D      TFIIIB
E        Phum_PHUM345780 trf2 protein, putative	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        Phum_PHUM375280 trf2 protein, putative	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        Phum_PHUM533080 trf2 protein, putative	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        Phum_PHUM452470 transcription initiation factor IIB, putative	K15196 BRF1; transcription factor IIIB 90 kDa subunit 
E        Phum_PHUM452440 transcription factor IIIB 70 kDa subunit, putative	K15196 BRF1; transcription factor IIIB 90 kDa subunit 
E        Phum_PHUM592870 transcription factor TFIIIB B'' component, putative	K15198 BDP1; transcription factor TFIIIB component B'' 
D      TFIIIC
E        Phum_PHUM613070 hypothetical protein	K15199 GTF3C1; general transcription factor 3C polypeptide 1 
E        Phum_PHUM592860 General transcription factor 3C polypeptide, putative	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
E        Phum_PHUM626410 hypothetical protein	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        Phum_PHUM430810 hypothetical protein	K15203 GTF3C6; general transcription factor 3C polypeptide 6 
D      TFIIIC, fungi type
E        Phum_PHUM626410 hypothetical protein	K15202 GTF3C5; general transcription factor 3C polypeptide 5 (transcription factor C subunit 1) 
E        Phum_PHUM592860 General transcription factor 3C polypeptide, putative	K15201 GTP3C3; general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) 
C    Other transcription-related factors
D      snRNA-activating protein complex (SNAPc)
E        Phum_PHUM524790 snRNA-activating protein complex subunit, putative	K15210 SNAPC3; snRNA-activating protein complex subunit 3 
D      Octamer transcription factors
E        Phum_PHUM348630 protein nubbin, putative	K09364 POU2F; POU domain transcription factor, class 2 
D      Others
E        Phum_PHUM501900 zinc finger protein, putative	K20828 ZNF143_76; zinc finger protein 143/76 
E        Phum_PHUM584080 hypothetical protein	K25817 MAF1; repressor of RNA polymerase III transcription MAF1 
B  RNA polymerase I system
C    RNA polymerase I
D      Core subunits
E        Phum_PHUM002150 DNA-directed RNA polymerase I 135 kDa polypeptide, putative	K03002 RPA2; DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] 
E        Phum_PHUM515130 DNA-directed RNA polymerase I 40 kDa polypeptide, putative	K03027 RPAC1; DNA-directed RNA polymerases I and III subunit RPAC1 
E        Phum_PHUM614740 DNA-directed RNA polymerase I 16 kD polypeptide, putative	K03020 RPAC2; DNA-directed RNA polymerases I and III subunit RPAC2 
D      Pol I specific subunits
E        Phum_PHUM580770 coiled-coil domain-containing protein, putative	K03004 RPA43; DNA-directed RNA polymerase I subunit RPA43 
E        Phum_PHUM073930 DNA-directed RNA polymerase I subunit, putative	K03000 RPA12; DNA-directed RNA polymerase I subunit RPA12 
D      Pol I, II, III common subunits
E        Phum_PHUM414840 DNA-directed RNA polymerase II 23 kDa polypeptide, putative	K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1 
E        Phum_PHUM150050 DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide, putative	K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2 
E        Phum_PHUM180020 DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide, putative	K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3 
E        Phum_PHUM290480 DNA-directed RNA polymerases I, II, and III 7.0 kDa polypeptide, putative	K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4 
C    Basal transcription factors
D      SL1/TIF-1B
E        Phum_PHUM345780 trf2 protein, putative	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        Phum_PHUM375280 trf2 protein, putative	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        Phum_PHUM533080 trf2 protein, putative	K03120 TBP; transcription initiation factor TFIID TATA-box-binding protein 
E        Phum_PHUM056170 hypothetical protein	K15213 TAF1B; TATA box-binding protein-associated factor RNA polymerase I subunit B 
C    Other transcription-related factors
D      UBF
E        Phum_PHUM617710 glutamic acid-rich protein precursor, putative	K09273 UBTF; upstream-binding transcription factor 
D      Transcription initiation factors
E        Phum_PHUM448650 transcription initiation factor ia, putative	K15216 RRN3; RNA polymerase I-specific transcription initiation factor RRN3 
E        Phum_PHUM252020 46 kDa FK506-binding nuclear protein, putative	K15223 UAF30; upstream activation factor subunit UAF30 
D      Transcription elongation factors
E        Phum_PHUM012550 transcription elongation factor SPT4, putative	K15171 SUPT4H1; transcription elongation factor SPT4 
E        Phum_PHUM411920 transcription elongation factor SPT5, putative	K15172 SUPT5H; transcription elongation factor SPT5 
D      NoRC (nucleolar remodeling complex)
E        Phum_PHUM614620 helicase, putative	K11654 SMARCA5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] 
D      CTDK-I complex
D      Transcription termination factors
D      Others
E        Phum_PHUM150070 hypothetical protein	K25818 NOLC1; nucleolar and coiled-body phosphoprotein 1 
#
A<b>Prokaryotic type</b>
B  Bacterial type
C    RNA polymerase
D      Core subunits
D      Sigma factors
C    Other transcription-related factors
D      RNA polymerase-associated proteins
D      Transcription elongation factors
D      Transcription termination factor
B  Archaeal type
C    RNA polymerase
D      Core subunits
C    Basal transcription factors
D      TFB
E        Phum_PHUM626400 transcription initiation factor iib, putative	K03124 TFIIB; transcription initiation factor TFIIB 
D      TFE
E        Phum_PHUM228670 hypothetical protein	K03136 TFIIE1; transcription initiation factor TFIIE subunit alpha 
D      TFS
!
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#Last updated: April 9, 2024