+D GENES KO
#
KEGG Orthology (KO) - Prochlorococcus marinus subsp. pastoris CCMP1986
%
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A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:pmm00010]
D PMM0596 Putative glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D PMM0890 pgi; Phosphoglucose isomerase (PGI) K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D PMM0767 glpX; Fructose-1,6-bisphosphatase/sedoheptulose-1,7-bisphosphatase K11532 glpX-SEBP; fructose-1,6-bisphosphatase II / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37]
D PMM0781 cbbA; Fructose-bisphosphate/sedoheptulose-1,7-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D PMM0829 tpi; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D PMM0023 gap2; Glyceraldehyde 3-phosphate dehydrogenase(NADP+)(phosphorylating) K00150 gap2; glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) [EC:1.2.1.59]
D PMM0195 pgk; Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D PMM1434 pgmI; Phosphoglycerate mutase, co-factor-independent (iPGM) K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D PMM0208 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D PMM0912 pykF; Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D PMM1288 pdhA; Pyruvate dehydrogenase E1 alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D PMM0930 pdhB; Pyruvate dehydrogenase E1 beta subunit K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D PMM0405 pdhC; Dihydrolipoamide acetyltransferase component (E2) of pyruvate de K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D PMM1298 lpdA; putative dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PMM1234 Zinc-containing alcohol dehydrogenase superfamily K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D PMM0331 Putative aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D PMM0619 acs; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PMM0076 pgm; Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
C 00020 Citrate cycle (TCA cycle) [PATH:pmm00020]
D PMM0161 gltA; Citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D PMM1700 acnB; Aconitate hydratase B K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D PMM1596 icd; Isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D PMM1298 lpdA; putative dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PMM1466 fumC; Fumarate lyase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D PMM0419 mqo; putative malate/quinone oxidoreductase K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D PMM1288 pdhA; Pyruvate dehydrogenase E1 alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D PMM0930 pdhB; Pyruvate dehydrogenase E1 beta subunit K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D PMM0405 pdhC; Dihydrolipoamide acetyltransferase component (E2) of pyruvate de K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
C 00030 Pentose phosphate pathway [PATH:pmm00030]
D PMM0890 pgi; Phosphoglucose isomerase (PGI) K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D PMM1074 zwf; Glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D PMM0771 Putative 6-phosphogluconolactonase (DevB, Pgl) K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31]
D PMM0770 gnd; 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D PMM0766 rpe; Ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D PMM1235 possible N-terminal fragment of transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D PMM1236 unknown K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D PMM1610 tktA; Transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D PMM0519 tal; Transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D PMM1489 rpiA; Ribose 5-phosphate isomerase K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D PMM0399 Putative deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D PMM1044 rbsK; possible pfkB family carbohydrate kinase K00852 rbsK; ribokinase [EC:2.7.1.15]
D PMM0076 pgm; Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D PMM1080 kprS; Ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D PMM0225 possible 2-keto-3-deoxy-6-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D PMM0781 cbbA; Fructose-bisphosphate/sedoheptulose-1,7-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D PMM0767 glpX; Fructose-1,6-bisphosphatase/sedoheptulose-1,7-bisphosphatase K11532 glpX-SEBP; fructose-1,6-bisphosphatase II / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37]
C 00040 Pentose and glucuronate interconversions [PATH:pmm00040]
D PMM1261 ugd; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D PMM0766 rpe; Ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D PMM0310 Carbohydrate kinase, FGGY family K22935 XK1; D-ribulokinase [EC:2.7.1.47]
C 00051 Fructose and mannose metabolism [PATH:pmm00051]
D PMM1627 Putative carbohydrate kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D PMM1196 manC; GDP-mannose pyrophosphorylase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D PMM0152 Putative sugar-phosphate nucleotidyl transferase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D PMM1216 Putative sugar-phosphate nucleotidyl transferase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D PMM1208 gmd; GDPmannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D PMM1207 Putative fucose synthetase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D PMM0960 conserved hypothetical protein K07026 E3.1.3.70; mannosyl-3-phosphoglycerate phosphatase [EC:3.1.3.70]
D PMM0767 glpX; Fructose-1,6-bisphosphatase/sedoheptulose-1,7-bisphosphatase K11532 glpX-SEBP; fructose-1,6-bisphosphatase II / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37]
D PMM0781 cbbA; Fructose-bisphosphate/sedoheptulose-1,7-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D PMM0829 tpi; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
C 00052 Galactose metabolism [PATH:pmm00052]
D PMM1209 galE; UDP-glucose-4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D PMM0076 pgm; Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D PMM0596 Putative glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
C 00053 Ascorbate and aldarate metabolism [PATH:pmm00053]
D PMM1261 ugd; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D PMM1210 Putative nucleotide sugar epimerase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D PMM0331 Putative aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00500 Starch and sucrose metabolism [PATH:pmm00500]
D PMM1711 sps; Sucrose phosphate synthase K00696 E2.4.1.14; sucrose-phosphate synthase [EC:2.4.1.14]
D PMM0961 Glycoside hydrolase family 13 K00690 E2.4.1.7; sucrose phosphorylase [EC:2.4.1.7]
D PMM1204 ddhA; glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D PMM0769 glgC; ADP-glucose pyrophosphorylase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D PMM0609 Putative ADPglucose--glucosyltransferase (GlgA) K00703 glgA; starch synthase [EC:2.4.1.21]
D PMM0584 glgB; 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D PMM1065 conserved hypothetical protein K16149 K16149; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D PMM1601 phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D PMM1081 malQ; Putative 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25]
D PMM1322 glgX; Putative isoamylase K01214 ISA; isoamylase [EC:3.2.1.68]
D PMM0076 pgm; Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D PMM0596 Putative glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D PMM0890 pgi; Phosphoglucose isomerase (PGI) K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D PMM1627 Putative carbohydrate kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:pmm00520]
D PMM1627 Putative carbohydrate kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D PMM1606 glmS; Glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D PMM0241 Phosphotransferase superclass K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D PMM0611 glmU; UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D PMM1300 putative_murA; UDP-N-glucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D PMM0021 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D PMM0596 Putative glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D PMM0076 pgm; Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D PMM1261 ugd; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D PMM1665 sqdB; sulfolipid (UDP-sulfoquinovose) biosynthesis protein K06118 SQD1; UDP-sulfoquinovose synthase [EC:3.13.1.1]
D PMM1209 galE; UDP-glucose-4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D PMM1210 Putative nucleotide sugar epimerase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D PMM0890 pgi; Phosphoglucose isomerase (PGI) K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D PMM0152 Putative sugar-phosphate nucleotidyl transferase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D PMM1216 Putative sugar-phosphate nucleotidyl transferase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D PMM1196 manC; GDP-mannose pyrophosphorylase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D PMM1208 gmd; GDPmannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D PMM1207 Putative fucose synthetase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D PMM1204 ddhA; glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D PMM1203 rfbG; CDP-glucose 4,6-dehydratase K01709 rfbG; CDP-glucose 4,6-dehydratase [EC:4.2.1.45]
D PMM1205 NDP-hexose 3,4-dehydratase K12452 ascC; CDP-4-dehydro-6-deoxyglucose reductase, E1 [EC:1.17.1.1]
D PMM1201 Putative CDP-tyvelose-2-epimerase (RfbE) K12454 rfbE; CDP-paratose 2-epimerase [EC:5.1.3.10]
D PMM0769 glgC; ADP-glucose pyrophosphorylase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
C 00620 Pyruvate metabolism [PATH:pmm00620]
D PMM0619 acs; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PMM1288 pdhA; Pyruvate dehydrogenase E1 alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D PMM0930 pdhB; Pyruvate dehydrogenase E1 beta subunit K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D PMM0405 pdhC; Dihydrolipoamide acetyltransferase component (E2) of pyruvate de K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D PMM1298 lpdA; putative dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PMM1234 Zinc-containing alcohol dehydrogenase superfamily K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D PMM0912 pykF; Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D PMM0534 accA; acetyl-CoA carboxylase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D PMM0027 accB; Biotin / Lipoyl attachment:Acetyl-CoA biotin carboxyl carrier subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D PMM0060 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D PMM0784 accD; acetyl-CoA carboxylase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D PMM0331 Putative aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D PMM0653 gloA; LACTOYLGLUTATHIONE LYASE K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D PMM0559 Putative hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D PMM0419 mqo; putative malate/quinone oxidoreductase K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D PMM1466 fumC; Fumarate lyase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D PMM1575 ppc; Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D PMM1066 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:pmm00630]
D PMM0619 acs; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PMM0161 gltA; Citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D PMM1700 acnB; Aconitate hydratase B K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D PMM0550 rbcL; Ribulose bisphosphate carboxylase, large chain K01601 rbcL; ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39]
D PMM0551 rbcS; Ribulose bisphosphate carboxylase, small chain K01602 rbcS; ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39]
D PMM0919 spt; serine:pyruvate/alanine:glyoxylate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D PMM1512 glsF; Ferredoxin-dependent glutamate synthase, Fd-GOGAT K00284 GLU; glutamate synthase (ferredoxin) [EC:1.4.7.1]
D PMM0920 glnA; Glutamine synthetase, glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PMM0258 glyA; Serine hydroxymethyltransferase (SHMT) K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D PMM1668 gcvP; Glycine cleavage system P-protein K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D PMM1687 gcvT; putative Glycine cleavage T-protein (aminomethyl transferase) K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D PMM1298 lpdA; putative dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PMM1669 gcsH; putative Glycine cleavage H-protein K02437 gcvH; glycine cleavage system H protein
D PMM0959 conserved hypothetical protein K15918 GLYK; D-glycerate 3-kinase [EC:2.7.1.31]
D PMM0225 possible 2-keto-3-deoxy-6-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D PMM1702 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
C 00640 Propanoate metabolism [PATH:pmm00640]
D PMM0619 acs; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PMM1298 lpdA; putative dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PMM0534 accA; acetyl-CoA carboxylase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D PMM0027 accB; Biotin / Lipoyl attachment:Acetyl-CoA biotin carboxyl carrier subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D PMM0060 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D PMM0784 accD; acetyl-CoA carboxylase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D PMM1700 acnB; Aconitate hydratase B K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
C 00650 Butanoate metabolism
D PMM0526 ilvH; Acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D PMM1154 ilvH; Acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:pmm00660]
D PMM0526 ilvH; Acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D PMM1154 ilvH; Acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D PMM0256 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D PMM0255 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D PMM0786 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:pmm00562]
D PMM0899 Possible myo-inositol-1(or 4)-monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D PMM0096 inositol monophosphate family protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D PMM0829 tpi; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:pmm00190]
D PMM0160 ndhA; putative respiratory-chain NADH dehydrogenase subunit K05572 ndhA; NAD(P)H-quinone oxidoreductase subunit 1 [EC:7.1.1.2]
D PMM0435 ndhB; putative NADH dehydrogenase (complex I) subunit (chain 2) K05573 ndhB; NAD(P)H-quinone oxidoreductase subunit 2 [EC:7.1.1.2]
D PMM0294 ndhC; putative NADH Dehydrogenase (complex I) subunit (chain 3) K05574 ndhC; NAD(P)H-quinone oxidoreductase subunit 3 [EC:7.1.1.2]
D PMM0150 ndhD; putative NADH dehydrogenase subunit (chain 4) K05575 ndhD; NAD(P)H-quinone oxidoreductase subunit 4 [EC:7.1.1.2]
D PMM0594 ndhD; putative NADH Dehydrogenase (complex I) subunit (chain 4) K05575 ndhD; NAD(P)H-quinone oxidoreductase subunit 4 [EC:7.1.1.2]
D PMM0157 ndhE; putative NADH Dehydrogenase subunit K05576 ndhE; NAD(P)H-quinone oxidoreductase subunit 4L [EC:7.1.1.2]
D PMM0149 ndhF; putative NADH Dehydrogenase (complex I) subunit (chain 5) K05577 ndhF; NAD(P)H-quinone oxidoreductase subunit 5 [EC:7.1.1.2]
D PMM0158 ndhG; putative NADH Dehydrogenase (complex I) subunit (chain 6) K05578 ndhG; NAD(P)H-quinone oxidoreductase subunit 6 [EC:7.1.1.2]
D PMM0172 ndhH; putative NADH dehydrogenase subunit K05579 ndhH; NAD(P)H-quinone oxidoreductase subunit H [EC:7.1.1.2]
D PMM0159 ndhI; putative NADH Dehydrogenase subunit K05580 ndhI; NAD(P)H-quinone oxidoreductase subunit I [EC:7.1.1.2]
D PMM0292 ndhJ; putative respiratory-chain NADH dehydrogenase subunit K05581 ndhJ; NAD(P)H-quinone oxidoreductase subunit J [EC:7.1.1.2]
D PMM0293 ndhK; putative respiratory-chain NADH dehydrogenase subunit K05582 ndhK; NAD(P)H-quinone oxidoreductase subunit K [EC:7.1.1.2]
D PMM0570 ndhL; NADH dehydrogenase subunit NdhL (ndhL) K05583 ndhL; NAD(P)H-quinone oxidoreductase subunit L [EC:7.1.1.2]
D PMM0145 conserved hypothetical protein K05584 ndhM; NAD(P)H-quinone oxidoreductase subunit M [EC:7.1.1.2]
D PMM1559 conserved hypothetical protein K05585 ndhN; NAD(P)H-quinone oxidoreductase subunit N [EC:7.1.1.2]
D PMM0448 ctaB; putative protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D PMM0444 ctaE; Cytochrome c oxidase, subunit III K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9]
D PMM0445 ctaD_(coxA); Cytochrome c oxidase, subunit I K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9]
D PMM0446 ctaC_(coxB); putative cytochrome c oxidase, subunit 2 K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9]
D PMM0447 conserved hypothetical protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D PMM1451 atpA; H+-transporting ATP synthase alpha-subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D PMM1438 atpB; H+-transporting ATP synthase beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D PMM1450 atpC; ATP synthase gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D PMM1452 atpH; ATP synthase, delta (OSCP) subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D PMM1439 atpC; ATP synthase, Epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D PMM1456 atpI; ATP synthase A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D PMM1454 atpG; ATP synthase B/B' CF(0) K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D PMM1453 atpF; ATP synthase B/B' CF(0) K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D PMM1455 H+-transporting ATP synthase c subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D PMM0494 ppa_(ipyR); putative inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D PMM0511 ppa_(ipyR); Inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D PMM1696 ppk; putative Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
C 00195 Photosynthesis [PATH:pmm00195]
D PMM0223 psbA; Photosystem II PsbA protein (D1) K02703 psbA; photosystem II P680 reaction center D1 protein [EC:1.10.3.9]
D PMM0315 psbB; Photosystem II PsbB protein (CP47) K02704 psbB; photosystem II CP47 chlorophyll apoprotein
D PMM1158 psbC; Photosystem II PsbC protein (CP43) K02705 psbC; photosystem II CP43 chlorophyll apoprotein
D PMM1157 psbD; Photosystem II PsbD protein (D2) K02706 psbD; photosystem II P680 reaction center D2 protein [EC:1.10.3.9]
D PMM0297 psbE; Cytochrome b559 alpha-subunit K02707 psbE; photosystem II cytochrome b559 subunit alpha
D PMM0298 psbF; Cytochrome b559 beta-subunit K02708 psbF; photosystem II cytochrome b559 subunit beta
D PMM0251 psbH; Photosystem II PsbH protein K02709 psbH; photosystem II PsbH protein
D PMM0253 photosystem II reaction center PsbI protein K02710 psbI; photosystem II PsbI protein
D PMM0300 psbJ; photosytem II PsbJ protein K02711 psbJ; photosystem II PsbJ protein
D PMM0272 Photosystem II protein PsbK K02712 psbK; photosystem II PsbK protein
D PMM0299 psbL; photosystem II PsbL protein K02713 psbL; photosystem II PsbL protein
D PMM0317 psbM; possible Photosystem II reaction center M protein (PsbM) K02714 psbM; photosystem II PsbM protein
D PMM0228 psbO; Photosystem II manganese-stabilizing protein K02716 psbO; photosystem II oxygen-evolving enhancer protein 1
D PMM1098 psbP; photosystem II oxygen evolving complex protein PsbP K02717 psbP; photosystem II oxygen-evolving enhancer protein 2
D PMM0314 psbT; Photosystem II PsbT protein K02718 psbT; photosystem II PsbT protein
D PMM0062 psbX; photosystem II PsbX protein K02722 psbX; photosystem II PsbX protein
D PMM1117 psbY; possible Photosystem II reaction center Y protein (PsbY) K02723 psbY; photosystem II PsbY protein
D PMM1644 psbZ; possible Photosystem II reaction center Z protein (PsbZ) K02724 psbZ; photosystem II PsbZ protein
D PMM0507 psb27; possible Photosystem II reaction center Psb27 protein K08902 psb27; photosystem II Psb27 protein
D PMM0926 psb28; possible Photosystem II reaction center Psb28 protein K08903 psb28; photosystem II 13kDa protein
D PMM1524 psaA; Photosystem I PsaA protein K02689 psaA; photosystem I P700 chlorophyll a apoprotein A1 [EC:1.97.1.12]
D PMM1523 psaB; Photosystem I PsaB protein K02690 psaB; photosystem I P700 chlorophyll a apoprotein A2 [EC:1.97.1.12]
D PMM1607 psaC; Photosystem I subunit PsaC K02691 psaC; photosystem I iron-sulfur center [EC:1.97.1.12]
D PMM1578 psaD; Photosystem I protein PsaD K02692 psaD; photosystem I subunit II
D PMM0329 psaE; Photosystem I PsaE protein (subunit IV) K02693 psaE; photosystem I subunit IV
D PMM0469 psaF; Photosystem I PsaF protein (subunit III) K02694 psaF; photosystem I subunit III
D PMM1520 psaI; photosystem I subunit VIII (PsaI) K02696 psaI; photosystem I subunit VIII
D PMM0468 psaJ; Photosystem I PsaJ protein (subunit IX) K02697 psaJ; photosystem I subunit IX
D PMM0906 psaK; Photosystem I PsaK protein (subunit X) K02698 psaK; photosystem I subunit X
D PMM1519 psaL; Photosystem I PsaL protein (subunit XI) K02699 psaL; photosystem I subunit XI
D PMM0540 psaM; possible photosystem I reaction centre subunit XII (PsaM) K02700 psaM; photosystem I subunit XII
D PMM0461 petA; Cytochrome f K02634 petA; apocytochrome f
D PMM0325 petB; Cytochrome b6 K02635 petB; cytochrome b6
D PMM0462 petC; Rieske iron-sulfur protein K02636 petC; cytochrome b6-f complex iron-sulfur subunit [EC:7.1.1.6]
D PMM0326 petD; PetD protein (subunit IV of the Cytochrome b6f complex) K02637 petD; cytochrome b6-f complex subunit 4
D PMM1058 petG; Cytochrome b6/f complex, subunit V K02640 petG; cytochrome b6-f complex subunit 5
D PMM0740 petN; Cytochrome b6-f complex subunit VIII K03689 petN; cytochrome b6-f complex subunit 8
D PMM0581 petE; plastocyanin K02638 petE; plastocyanin
D PMM0366 Type-1 copper (blue) domain K02638 petE; plastocyanin
D PMM0898 petF; ferredoxin, petF-like protein K02639 petF; ferredoxin
D PMM1352 petF; ferredoxin K02639 petF; ferredoxin
D PMM1449 petF; ferredoxin K02639 petF; ferredoxin
D PMM1075 petH; ferredoxin-NADP oxidoreductase (FNR) K02641 petH; ferredoxin--NADP+ reductase [EC:1.18.1.2]
D PMM1439 atpC; ATP synthase, Epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D PMM1438 atpB; H+-transporting ATP synthase beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D PMM1450 atpC; ATP synthase gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D PMM1451 atpA; H+-transporting ATP synthase alpha-subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D PMM1452 atpH; ATP synthase, delta (OSCP) subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D PMM1454 atpG; ATP synthase B/B' CF(0) K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D PMM1453 atpF; ATP synthase B/B' CF(0) K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D PMM1455 H+-transporting ATP synthase c subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D PMM1456 atpI; ATP synthase A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
C 00196 Photosynthesis - antenna proteins [PATH:pmm00196]
D PMM0305 cpeB; Phycobilisome protein K05377 cpeB; phycoerythrin beta chain
D PMM0306 cpeS; phycoerythrin linker protein CpeS homolog K05382 cpeS; phycoerythrin-associated linker protein
C 00710 Carbon fixation in photosynthetic organisms [PATH:pmm00710]
D PMM0550 rbcL; Ribulose bisphosphate carboxylase, large chain K01601 rbcL; ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39]
D PMM0551 rbcS; Ribulose bisphosphate carboxylase, small chain K01602 rbcS; ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39]
D PMM0195 pgk; Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D PMM0023 gap2; Glyceraldehyde 3-phosphate dehydrogenase(NADP+)(phosphorylating) K00150 gap2; glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) [EC:1.2.1.59]
D PMM0781 cbbA; Fructose-bisphosphate/sedoheptulose-1,7-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D PMM0767 glpX; Fructose-1,6-bisphosphatase/sedoheptulose-1,7-bisphosphatase K11532 glpX-SEBP; fructose-1,6-bisphosphatase II / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37]
D PMM1235 possible N-terminal fragment of transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D PMM1236 unknown K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D PMM1610 tktA; Transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D PMM1489 rpiA; Ribose 5-phosphate isomerase K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D PMM0785 prk; phosphoribulokinase K00855 PRK; phosphoribulokinase [EC:2.7.1.19]
D PMM0829 tpi; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D PMM0766 rpe; Ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D PMM1575 ppc; Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
C 00720 Carbon fixation pathways in prokaryotes
C 00680 Methane metabolism [PATH:pmm00680]
D PMM1234 Zinc-containing alcohol dehydrogenase superfamily K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D PMM0258 glyA; Serine hydroxymethyltransferase (SHMT) K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D PMM0919 spt; serine:pyruvate/alanine:glyoxylate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D PMM0208 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D PMM1575 ppc; Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D PMM0781 cbbA; Fructose-bisphosphate/sedoheptulose-1,7-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D PMM0767 glpX; Fructose-1,6-bisphosphatase/sedoheptulose-1,7-bisphosphatase K11532 glpX-SEBP; fructose-1,6-bisphosphatase II / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37]
D PMM0619 acs; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PMM1434 pgmI; Phosphoglycerate mutase, co-factor-independent (iPGM) K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D PMM1354 serA; putative D-3-phosphoglycerate dehydrogenase (PGDH) K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D PMM0614 conserved hypothetical protein K05979 comB; 2-phosphosulfolactate phosphatase [EC:3.1.3.71]
C 00910 Nitrogen metabolism [PATH:pmm00910]
D PMM0370 putative cyanate ABC transporter, substrate binding protein K15576 nrtA; nitrate/nitrite transport system substrate-binding protein
D PMM0371 putative cyanate ABC transporter K15577 nrtB; nitrate/nitrite transport system permease protein
D PMM0372 putative cyanate ABC transporter K15578 nrtC; nitrate/nitrite transport system ATP-binding protein [EC:7.3.2.4]
D PMM0920 glnA; Glutamine synthetase, glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PMM1512 glsF; Ferredoxin-dependent glutamate synthase, Fd-GOGAT K00284 GLU; glutamate synthase (ferredoxin) [EC:1.4.7.1]
D PMM0373 cynS; Cyanate lyase K01725 cynS; cyanate lyase [EC:4.2.1.104]
C 00920 Sulfur metabolism [PATH:pmm00920]
D PMM0227 cysD; ATP-sulfurylase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D PMM0874 possible ATP adenylyltransferase K00988 APA1_2; sulfate adenylyltransferase (ADP) / ATP adenylyltransferase [EC:2.7.7.5 2.7.7.53]
D PMM0166 cysC; Adenylylsulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]
D PMM1192 CysQ protein homolog K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D PMM0081 cysH; Phosphoadenosine phosphosulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]
D PMM0758 sir; Ferredoxin-sulfite reductase K00392 sir; sulfite reductase (ferredoxin) [EC:1.8.7.1]
D PMM1638 cysE; Serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D PMM0123 cysK2; O-acetylserine (thiol)-lyase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D PMM0407 cysK1; O-acetylserine (thiol)-lyase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D PMM0643 metA; putative homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D PMM0408 possible Cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:pmm00061]
D PMM0534 accA; acetyl-CoA carboxylase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D PMM0027 accB; Biotin / Lipoyl attachment:Acetyl-CoA biotin carboxyl carrier subunit K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D PMM0060 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D PMM0784 accD; acetyl-CoA carboxylase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D PMM1608 acpP; acyl carrier protein (ACP) K02078 acpP; acyl carrier protein
D PMM0137 fabD; Malonyl coenzyme A-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D PMM0136 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D PMM1609 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D PMM0453 fabG; 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PMM1336 Putative (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D PMM0282 fabI; enoyl-[acyl-carrier-protein] reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D PMM0402 fadD; putative long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:pmm00071]
D PMM0402 fadD; putative long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D PMM1234 Zinc-containing alcohol dehydrogenase superfamily K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D PMM0331 Putative aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:pmm00561]
D PMM0959 conserved hypothetical protein K15918 GLYK; D-glycerate 3-kinase [EC:2.7.1.31]
D PMM0331 Putative aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D PMM0135 plsX; fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D PMM1327 conserved hypothetical protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D PMM0138 plsC; putative 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D PMM0183 dgkA; Prokaryotic diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D PMM0592 lipase family protein K01046 lip; triacylglycerol lipase [EC:3.1.1.3]
D PMM1659 Glycosyl transferase, family 2 K19003 mgdA; 1,2-diacylglycerol 3-beta-glucosyltransferase [EC:2.4.1.336]
D PMM0478 conserved hypothetical protein K20024 mgdE; monoglucosyldiacylglycerol epimerase [EC:5.1.3.34]
D PMM1665 sqdB; sulfolipid (UDP-sulfoquinovose) biosynthesis protein K06118 SQD1; UDP-sulfoquinovose synthase [EC:3.13.1.1]
C 00564 Glycerophospholipid metabolism [PATH:pmm00564]
D PMM1327 conserved hypothetical protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D PMM0138 plsC; putative 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D PMM0183 dgkA; Prokaryotic diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D PMM1085 Phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D PMM0798 pgsA; CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
C 00565 Ether lipid metabolism
C 00600 Sphingolipid metabolism
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism
C 01040 Biosynthesis of unsaturated fatty acids
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:pmm00230]
D PMM0286 NUDIX hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D PMM0076 pgm; Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D PMM1080 kprS; Ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D PMM0004 purF; Glutamine amidotransferase class-II:Phosphoribosyl transferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D PMM1340 purD; phosphoribosylglycinamide synthetase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D PMM0891 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D PMM1004 purT; GAR transformylase 2 K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21]
D PMM0003 purL; phosphoribosylformylglycinamidine synthetase II K23269 purL; phosphoribosylformylglycinamidine synthase subunit PurL [EC:6.3.5.3]
D PMM0779 conserved hypothetical protein K23264 purS; phosphoribosylformylglycinamidine synthase subunit PurS [EC:6.3.5.3]
D PMM0780 purQ_(purL; phosphoribosylformylglycinamidine synthase K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D PMM1589 purM; phosphoribosyl formylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D PMM0683 purK; phosphoribosylaminoimidazole carboxylase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D PMM0167 purE; Phosphoribosylaminoimidazole carboxylase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D PMM1339 purC; SAICAR synthetase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D PMM1465 purB; Fumarate lyase:Adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D PMM0266 purH; AICARFT/IMPCHase bienzyme:Methylglyoxal synthase-like domain K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D PMM1122 apt; Phosphoribosyl transferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D PMM1271 surE; Survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D PMM0528 DUF152 K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D PMM1062 guaB; putative IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D PMM0046 Nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D PMM0279 conserved hypothetical protein K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D PMM0037 guaA; Glutamine amidotransferase class-I:GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D PMM0467 gmk; Guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D PMM0661 nrdJ; ribonucleotide reductase (Class II) K00524 nrdJ; ribonucleotide reductase, class II [EC:1.17.4.2]
D PMM0191 spoT; guanosine-3',5'-bis(diphosphate) 3'-diphosphatase, (ppGpp)ase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D PMM0457 ppx; putative exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D PMM0155 conserved hypothetical protein K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D PMM0506 purA; Adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D PMM1539 adk; Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D PMM0874 possible ATP adenylyltransferase K00988 APA1_2; sulfate adenylyltransferase (ADP) / ATP adenylyltransferase [EC:2.7.7.5 2.7.7.53]
D PMM0166 cysC; Adenylylsulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]
D PMM0227 cysD; ATP-sulfurylase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D PMM0963 ureC; Urease alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D PMM0964 ureB; Urease beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5]
D PMM0965 ureA; Urease gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5]
C 00240 Pyrimidine metabolism [PATH:pmm00240]
D PMM0825 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D PMM0951 carA; carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D PMM0233 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D PMM0514 putative dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D PMM0569 pyrC; Dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D PMM0199 pyrD; Dihydroorotate dehydrogenase K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D PMM0275 pyrE; Orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D PMM1328 pyrF; orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D PMM0522 pyrH; uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D PMM0046 Nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D PMM1159 Maf-like protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D PMM1689 pyrG; Glutamine amidotransferase class-I:CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D PMM1590 panC; putative bifunctional enzyme; pantothenate synthetase/cytidylate kinase K13799 panC-cmk; pantoate ligase / CMP/dCMP kinase [EC:6.3.2.1 2.7.4.25]
D PMM0989 ATP/GTP-binding site motif A (P-loop) K00876 udk; uridine kinase [EC:2.7.1.48]
D PMM1271 surE; Survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D PMM0776 putative uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D PMM1433 Phosphoribosyl transferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D PMM1304 codA; possible cytosine deaminase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21]
D PMM0661 nrdJ; ribonucleotide reductase (Class II) K00524 nrdJ; ribonucleotide reductase, class II [EC:1.17.4.2]
D PMM0244 dcd; dCTP Deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D PMM0130 Thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D PMM0243 possible Thy1 protein homolog K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:pmm00250]
D PMM0674 aspC; Aminotransferases class-I K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D PMM0100 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D PMM0821 conserved hypothetical protein K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D PMM0919 spt; serine:pyruvate/alanine:glyoxylate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D PMM1707 argG; Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D PMM0012 argH; Fumarate lyase:Delta crystallin K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D PMM0506 purA; Adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D PMM1465 purB; Fumarate lyase:Adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D PMM0222 putative aspartoacylase K01437 ASPA; aspartoacylase [EC:3.5.1.15]
D PMM0233 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D PMM0920 glnA; Glutamine synthetase, glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PMM0825 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D PMM0951 carA; carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D PMM0780 purQ_(purL; phosphoribosylformylglycinamidine synthase K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D PMM1606 glmS; Glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D PMM0004 purF; Glutamine amidotransferase class-II:Phosphoribosyl transferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:pmm00260]
D PMM1648 lysC; Aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D PMM1654 asd; aspartate Semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D PMM1051 thrA; Homoserine dehydrogenase:ACT domain K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D PMM0595 thrB; Homoserine kinase:GHMP kinases putative ATP-binding domain K00872 thrB; homoserine kinase [EC:2.7.1.39]
D PMM1716 thrC; Threonine synthase: Pyridoxal-5'-phosphate-dependent enzymes, beta family K01733 thrC; threonine synthase [EC:4.2.3.1]
D PMM0258 glyA; Serine hydroxymethyltransferase (SHMT) K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D PMM0919 spt; serine:pyruvate/alanine:glyoxylate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D PMM1434 pgmI; Phosphoglycerate mutase, co-factor-independent (iPGM) K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D PMM0959 conserved hypothetical protein K15918 GLYK; D-glycerate 3-kinase [EC:2.7.1.31]
D PMM1354 serA; putative D-3-phosphoglycerate dehydrogenase (PGDH) K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D PMM1668 gcvP; Glycine cleavage system P-protein K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D PMM1687 gcvT; putative Glycine cleavage T-protein (aminomethyl transferase) K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D PMM1298 lpdA; putative dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PMM1669 gcsH; putative Glycine cleavage H-protein K02437 gcvH; glycine cleavage system H protein
D PMM0908 ilvA; threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D PMM0572 trpA; Tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D PMM0164 trpB; Tryptophan synthase, beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:pmm00270]
D PMM1638 cysE; Serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D PMM0123 cysK2; O-acetylserine (thiol)-lyase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D PMM0407 cysK1; O-acetylserine (thiol)-lyase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D PMM0877 metH; putative methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D PMM0311 metK; S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D PMM1572 DUF206 K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D PMM1685 speE; putative spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D PMM0301 5'-methylthioadenosine phosphorylase K00772 mtaP; 5'-methylthioadenosine phosphorylase [EC:2.4.2.28]
D PMM0528 DUF152 K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D PMM1625 ahcY; putative adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D PMM1648 lysC; Aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D PMM1654 asd; aspartate Semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D PMM1051 thrA; Homoserine dehydrogenase:ACT domain K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D PMM0643 metA; putative homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D PMM0408 possible Cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D PMM0642 cysD; putative O-Acetyl homoserine sulfhydrylase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D PMM0878 ilvE; putative Branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D PMM0178 gshB; putative Glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D PMM0674 aspC; Aminotransferases class-I K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D PMM1354 serA; putative D-3-phosphoglycerate dehydrogenase (PGDH) K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
C 00280 Valine, leucine and isoleucine degradation [PATH:pmm00280]
D PMM0878 ilvE; putative Branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D PMM1298 lpdA; putative dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PMM0331 Putative aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:pmm00290]
D PMM0908 ilvA; threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D PMM0256 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D PMM0255 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D PMM0786 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D PMM0526 ilvH; Acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D PMM1154 ilvH; Acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D PMM1315 ilvC; Ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D PMM0774 ilvD; Dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D PMM0878 ilvE; putative Branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D PMM1066 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:pmm00300]
D PMM1051 thrA; Homoserine dehydrogenase:ACT domain K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D PMM1648 lysC; Aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D PMM1654 asd; aspartate Semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D PMM1653 dapA; Dihydrodipicolinate synthetase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D PMM0832 dapB; Dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D PMM1301 argD; N-acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D PMM0888 dapF; Diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D PMM1500 putative aminotransferase K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83]
D PMM1090 lysA; Diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D PMM0413 murE; UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D PMM0610 murF; Cytoplasmic peptidoglycan synthetase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:pmm00310]
D PMM1298 lpdA; putative dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PMM1215 conserved hypothetical protein K15736 lhgO; (S)-2-hydroxyglutarate dehydrogenase [EC:1.1.5.13]
D PMM0331 Putative aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00220 Arginine biosynthesis [PATH:pmm00220]
D PMM1263 ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D PMM1707 argG; Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D PMM0012 argH; Fumarate lyase:Delta crystallin K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D PMM0963 ureC; Urease alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D PMM0964 ureB; Urease beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5]
D PMM0965 ureA; Urease gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5]
D PMM0780 purQ_(purL; phosphoribosylformylglycinamidine synthase K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D PMM0920 glnA; Glutamine synthetase, glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PMM0674 aspC; Aminotransferases class-I K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D PMM0050 argJ; ArgJ family K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]
D PMM0499 argB; Aspartokinase superfamily:Acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D PMM0892 argC; N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D PMM1301 argD; N-acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
C 00330 Arginine and proline metabolism [PATH:pmm00330]
D PMM0531 Creatininase K01470 E3.5.2.10; creatinine amidohydrolase [EC:3.5.2.10]
D PMM1304 codA; possible cytosine deaminase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21]
D PMM0045 Orn/DAP/Arg decarboxylases family 2 K01585 speA; arginine decarboxylase [EC:4.1.1.19]
D PMM1686 Arginase family K01480 speB; agmatinase [EC:3.5.3.11]
D PMM1685 speE; putative spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D PMM1572 DUF206 K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D PMM0331 Putative aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D PMM0396 proC; Delta 1-pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D PMM0788 proB; putative glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D PMM0590 proA; Gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D PMM0356 proline iminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D PMM0674 aspC; Aminotransferases class-I K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
C 00340 Histidine metabolism [PATH:pmm00340]
D PMM0560 possible ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D PMM0900 hisZ; possible Histidyl-tRNA synthetase K02502 hisZ; ATP phosphoribosyltransferase regulatory subunit
D PMM0578 Phosphoribosyl-AMP cyclohydrolase K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31]
D PMM0796 hisA; PHOSPHORIBOSYLFORMIMINO-5-AMINOIMIDAZOLE CARBOXAMIDE RIBOTIDE ISOMERASE K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D PMM1060 Glutamine amidotransferase class-I K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D PMM0430 hisF; Imidazole glycerol phosphate synthase subunit HisF (cyclase) K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D PMM0281 hisB; Imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
D PMM0186 hisC; Aminotransferases class-I K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PMM1488 hisD; Histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D PMM0331 Putative aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D PMM0222 putative aspartoacylase K01437 ASPA; aspartoacylase [EC:3.5.1.15]
C 00350 Tyrosine metabolism [PATH:pmm00350]
D PMM0674 aspC; Aminotransferases class-I K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D PMM0186 hisC; Aminotransferases class-I K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PMM1234 Zinc-containing alcohol dehydrogenase superfamily K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D PMM1167 Macrophage migration inhibitory factor family K07253 MIF; phenylpyruvate tautomerase [EC:5.3.2.1]
C 00360 Phenylalanine metabolism [PATH:pmm00360]
D PMM0674 aspC; Aminotransferases class-I K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D PMM0186 hisC; Aminotransferases class-I K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PMM1167 Macrophage migration inhibitory factor family K07253 MIF; phenylpyruvate tautomerase [EC:5.3.2.1]
C 00380 Tryptophan metabolism [PATH:pmm00380]
D PMM1298 lpdA; putative dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PMM0331 Putative aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:pmm00400]
D PMM1699 aroF; DAHP synthetase class I K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D PMM0682 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D PMM0387 aroD; Dehydroquinase class II K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D PMM0107 aroK; Shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D PMM0613 aroA; EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D PMM0224 aroC; Chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D PMM1577 trpE; Anthranilate synthase component I and chorismate binding enzyme K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D PMM0952 trpD_G; putative Anthranilate synthase component II K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D PMM0537 trpF; phosphoribosylanthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]
D PMM1297 trpC; Indole-3-glycerol phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D PMM0572 trpA; Tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D PMM0164 trpB; Tryptophan synthase, beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D PMM1181 tyrA; Chorismate mutase K06208 aroH; chorismate mutase [EC:5.4.99.5]
D PMM1565 Prephenate dehydrogenase K15226 tyrAa; arogenate dehydrogenase (NADP+) [EC:1.3.1.78]
D PMM1504 pheA; Chorismate mutase-Prephenate dehydratase K04518 pheA2; prephenate dehydratase [EC:4.2.1.51]
D PMM0674 aspC; Aminotransferases class-I K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D PMM0186 hisC; Aminotransferases class-I K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:pmm00410]
D PMM0331 Putative aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D PMM1590 panC; putative bifunctional enzyme; pantothenate synthetase/cytidylate kinase K13799 panC-cmk; pantoate ligase / CMP/dCMP kinase [EC:6.3.2.1 2.7.4.25]
C 00430 Taurine and hypotaurine metabolism
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:pmm00450]
D PMM0408 possible Cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D PMM0877 metH; putative methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D PMM0070 putative cysteine desulfurase or selenocysteine lyase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D PMM0211 trxB; FAD-dependent pyridine nucleotide-disulphide oxidoreductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D PMM1150 putative thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D PMM0227 cysD; ATP-sulfurylase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D PMM0302 selD; Selenide,water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D PMM0867 metG; Methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:pmm00460]
D PMM0821 conserved hypothetical protein K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D PMM0258 glyA; Serine hydroxymethyltransferase (SHMT) K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:pmm00470]
D PMM1527 alr; putative Alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D PMM1306 ddlA; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D PMM0780 purQ_(purL; phosphoribosylformylglycinamidine synthase K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D PMM0617 murI; Putative aspartate and glutamate racemases:Glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D PMM1364 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D PMM0888 dapF; Diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D PMM1090 lysA; Diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
C 00480 Glutathione metabolism [PATH:pmm00480]
D PMM0178 gshB; putative Glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D PMM1332 Cytosol aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D PMM1002 pepN; probable aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D PMM0566 conserved hypothetical protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D PMM0110 putative glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D PMM0630 GSTTLp28; Glutathione S-transferase N terminus K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D PMM0567 gshR; probable glutathione reductase (NADPH) K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7]
D PMM1596 icd; Isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D PMM0770 gnd; 6-phosphogluconate dehydrogenase K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D PMM1074 zwf; Glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D PMM1006 Glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
D PMM1685 speE; putative spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation
C 00540 Lipopolysaccharide biosynthesis [PATH:pmm00540]
D PMM1335 lpxA; UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D PMM1337 lpxC; UDP-3-0-acyl N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D PMM0787 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D PMM1334 lpxB; Lipid-A-disaccharide synthetase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D PMM1217 putative phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D PMM1214 possible phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
C 00542 O-Antigen repeat unit biosynthesis
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:pmm00541]
D PMM1209 galE; UDP-glucose-4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D PMM1261 ugd; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D PMM1210 Putative nucleotide sugar epimerase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D PMM1260 Nucleoside-diphosphate-sugar epimerase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D PMM1257 possible dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D PMM1233 rfbD; putative dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D PMM1204 ddhA; glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D PMM1203 rfbG; CDP-glucose 4,6-dehydratase K01709 rfbG; CDP-glucose 4,6-dehydratase [EC:4.2.1.45]
D PMM1205 NDP-hexose 3,4-dehydratase K12452 ascC; CDP-4-dehydro-6-deoxyglucose reductase, E1 [EC:1.17.1.1]
D PMM1201 Putative CDP-tyvelose-2-epimerase (RfbE) K12454 rfbE; CDP-paratose 2-epimerase [EC:5.1.3.10]
D PMM1196 manC; GDP-mannose pyrophosphorylase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D PMM1208 gmd; GDPmannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D PMM1207 Putative fucose synthetase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D PMM0611 glmU; UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
C 00550 Peptidoglycan biosynthesis [PATH:pmm00550]
D PMM1300 putative_murA; UDP-N-glucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D PMM0021 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D PMM0022 murC; Probable UDP-N-acetylmuramate-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D PMM1364 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D PMM0413 murE; UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D PMM1306 ddlA; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D PMM0610 murF; Cytoplasmic peptidoglycan synthetase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D PMM1092 uppS; Undecaprenyl pyrophosphate synthetase (UPPS) K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D PMM0956 Bacitracin resistance protein BacA K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D PMM1709 mraY; Putative phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D PMM0197 murG; Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D PMM0427 putative penicillin binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D PMM0040 Putative penicillin-binding protein K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D PMM0518 ftsI; putative peptidoglycan synthetase (pbp transpeptidase domain) K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D PMM0885 dacB; putative D-Ala-D-Ala carboxypeptidase 3 (S13) family K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D PMM0761 putative carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
C 00552 Teichoic acid biosynthesis [PATH:pmm00552]
D PMM0956 Bacitracin resistance protein BacA K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:pmm00543]
D PMM1638 cysE; Serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:pmm00730]
D PMM1611 thiC; ThiC family K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D PMM0358 thiD; Phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D PMM0170 NifS-like aminotransferase class-V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D PMM0887 nifS; possible cysteine desulfurase (class-V aminotransferase family) K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D PMM0047 thiO; PUTATIVE THIAMINE BIOSYNTHESIS OXIDOREDUCTASE K03153 thiO; glycine oxidase [EC:1.4.3.19]
D PMM0907 Dxs; 1-deoxy-D-xylulose 5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D PMM1664 thiG; thiamin biosynthesis protein K03149 thiG; thiazole synthase [EC:2.8.1.10]
D PMM1274 thiE; Thiamine monophosphate synthase (TMP) K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D PMM0024 thiL; putative thiamine-monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D PMM0019 conserved hypothetical protein K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D PMM1539 adk; Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D PMM0357 TENA/THI-4 protein K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
C 00740 Riboflavin metabolism [PATH:pmm00740]
D PMM0893 ribA_ribB; possible GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D PMM1265 ribD; putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D PMM1643 ribH; Putative 6,7-dimethyl-8-ribityllumazine synthase or riboflavin synthase beta chain K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D PMM0442 ribE; Putative Riboflavin synthase alpha chain K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D PMM1273 ribF; putative riboflavin kinase/FAD synthase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D PMM0286 NUDIX hydrolase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
C 00750 Vitamin B6 metabolism [PATH:pmm00750]
D PMM1358 conserved hypothetical protein K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
D PMM0052 Aldo/keto reductase family K05275 E1.1.1.65; pyridoxine 4-dehydrogenase [EC:1.1.1.65]
D PMM0028 pdxA; putative pyridoxal phosphate biosynthetic protein PdxA K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262]
D PMM1107 pdxJ; Pyridoxal phosphate biosynthetic protein PdxJ K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2]
D PMM1716 thrC; Threonine synthase: Pyridoxal-5'-phosphate-dependent enzymes, beta family K01733 thrC; threonine synthase [EC:4.2.3.1]
C 00760 Nicotinate and nicotinamide metabolism [PATH:pmm00760]
D PMM0100 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D PMM0678 Quinolinate synthetase A protein K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D PMM0188 nadC; Nicotinate-nucleotide pyrophosphorylase:Quinolinate phosphoriobsyl transferase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D PMM1271 surE; Survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D PMM1445 Putative nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D PMM1446 Carbon-nitrogen hydrolase:NAD+ synthase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
D PMM1269 predicted sugar kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D PMM0156 predicted inorganic polyphosphate / ATP-NAD+ kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D PMM1146 pntA-2; putative nicotinamide nucleotide transhydrogenase, subunit alpha 2 (A2) K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D PMM1147 pntA-1; putative nicotinamide nucleotide transhydrogenase, subunit alpha 1 (A1) K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D PMM1145 pntB; putative nicotinamide nucleotide transhydrogenase, subunit beta K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1]
C 00770 Pantothenate and CoA biosynthesis [PATH:pmm00770]
D PMM0526 ilvH; Acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D PMM1154 ilvH; Acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D PMM1315 ilvC; Ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D PMM0774 ilvD; Dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D PMM1310 panB; putative Ketopantoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D PMM1590 panC; putative bifunctional enzyme; pantothenate synthetase/cytidylate kinase K13799 panC-cmk; pantoate ligase / CMP/dCMP kinase [EC:6.3.2.1 2.7.4.25]
D PMM0080 conserved hypothetical protein K03525 coaX; type III pantothenate kinase [EC:2.7.1.33]
D PMM0229 dfp_(coaBC); putative p-pantothenate cysteine ligase and p-pantothenenoylcysteine decarboxylase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D PMM0884 coaD; putative pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D PMM0049 coaE; putative dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D PMM0078 possible 4'-phosphopantetheinyl transferase family protein K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-]
D PMM0878 ilvE; putative Branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D PMM0331 Putative aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00780 Biotin metabolism [PATH:pmm00780]
D PMM1470 conserved hypothetical protein K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197]
D PMM1609 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D PMM0453 fabG; 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PMM1336 Putative (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D PMM0282 fabI; enoyl-[acyl-carrier-protein] reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D PMM1469 conserved hypothetical K19560 bioK; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85]
D PMM1468 bioF; putative 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D PMM1472 BioA; putative diaminopelargonic acid synthase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D PMM1471 BioD; putative Dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D PMM1093 BioB; Biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6]
D PMM0433 BirA; putative Biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:pmm00785]
D PMM0401 lipB; putative lipoate-protein ligase B K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D PMM1096 lipA; Lipoate synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D PMM1514 lipA; lipoic acid synthetase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D PMM0539 Biotin/lipoate A/B protein ligase family K03800 lplA; lipoate---protein ligase [EC:6.3.1.20]
D PMM1298 lpdA; putative dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PMM1288 pdhA; Pyruvate dehydrogenase E1 alpha subunit K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D PMM0930 pdhB; Pyruvate dehydrogenase E1 beta subunit K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D PMM0405 pdhC; Dihydrolipoamide acetyltransferase component (E2) of pyruvate de K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D PMM1668 gcvP; Glycine cleavage system P-protein K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D PMM1687 gcvT; putative Glycine cleavage T-protein (aminomethyl transferase) K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D PMM1669 gcsH; putative Glycine cleavage H-protein K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:pmm00790]
D PMM0536 folE; putative GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D PMM0591 folB; Possible dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D PMM0287 folK; possible 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D PMM0830 folP; putative dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D PMM1302 folC; putuative bifunctional Dihydrofolate/Folylpolyglutamate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D PMM0893 ribA_ribB; possible GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D PMM0184 pabA; para-aminobenzoate synthase component II K01664 pabA; para-aminobenzoate synthetase component II [EC:2.6.1.85]
D PMM1692 possible p-aminobenzoate synthetase K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85]
D PMM0106 6-pyruvoyl tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D PMM0579 conserved hypothetical protein K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D PMM0491 4a-hydroxytetrahydrobiopterin dehydratase (PCD) K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D PMM1690 possible organic radical activating enzyme K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D PMM1691 hypothetical ATPase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D PMM1461 conserved hypothetical protein K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
C 00670 One carbon pool by folate [PATH:pmm00670]
D PMM1069 folD; putuative bifunctional Methylenetetrahydrofolate dehydrogenase Methenyltetrahydrofolate/cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D PMM0258 glyA; Serine hydroxymethyltransferase (SHMT) K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D PMM0891 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D PMM0266 purH; AICARFT/IMPCHase bienzyme:Methylglyoxal synthase-like domain K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D PMM0841 fmt; putative Methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D PMM1687 gcvT; putative Glycine cleavage T-protein (aminomethyl transferase) K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D PMM0877 metH; putative methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D PMM0243 possible Thy1 protein homolog K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
D PMM1702 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D PMM0153 conserved hypothetical protein K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D PMM1053 conserved hypothetical protein K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:pmm00860]
D PMM0473 gltX; Glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PMM0768 hemA; glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D PMM0483 hemL; glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D PMM0215 Delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D PMM0495 hemC; Porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D PMM0113 hemD; putative uroporphyrinogen III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D PMM0583 hemE; Uroporphyrinogen decarboxylase (URO-D) K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D PMM1582 hemF; Coproporphyrinogen III oxidase K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3]
D PMM0881 conserved hypothetical protein K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-]
D PMM0525 Ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D PMM1694 cobA; putative uroporphyrin-III C-methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D PMM0448 ctaB; putative protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D PMM0447 conserved hypothetical protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D PMM0646 conserved hypothetical protein K03795 cbiX; sirohydrochlorin cobaltochelatase [EC:4.99.1.3]
D PMM0389 cobI_cbiL; PRECORRIN-2 C20-METHYLTRANSFERASE K03394 cobI-cbiL; precorrin-2/cobalt-factor-2 C20-methyltransferase [EC:2.1.1.130 2.1.1.151]
D PMM1525 cbiG_cobJ_fusion; bifunctional cbiH protien and PRECORRIN-3B C17-METHYLTRANSFERASE K13541 cbiGH-cobJ; cobalt-precorrin 5A hydrolase / cobalt-factor III methyltransferase / precorrin-3B C17-methyltransferase [EC:3.7.1.12 2.1.1.272 2.1.1.131]
D PMM0459 cobM; PUTATIVE PRECORRIN-4 C11-METHYLTRANSFERASE K05936 cobM; precorrin-4/cobalt-precorrin-4 C11-methyltransferase [EC:2.1.1.133 2.1.1.271]
D PMM0503 possible precorrin-6X reductase K05895 cobK-cbiJ; precorrin-6A/cobalt-precorrin-6A reductase [EC:1.3.1.54 1.3.1.106]
D PMM0036 CbiD protein K02188 cbiD; cobalt-precorrin-5B (C1)-methyltransferase [EC:2.1.1.195]
D PMM1268 cobL; putative precorrin-6y methylase K00595 cobL-cbiET; precorrin-6B C5,15-methyltransferase / cobalt-precorrin-6B C5,C15-methyltransferase [EC:2.1.1.132 2.1.1.289 2.1.1.196]
D PMM1646 cobH; putative Precorrin-8X methylmutase CobH K06042 cobH-cbiC; precorrin-8X/cobalt-precorrin-8 methylmutase [EC:5.4.99.61 5.4.99.60]
D PMM1072 cbiA; putative Cobyrinic acid a,c-diamide synthase K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11]
D PMM0879 CobN; cobalamin biosynthetic protein CobN K02230 cobN; cobaltochelatase CobN [EC:6.6.1.2]
D PMM0245 cob(I)alamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D PMM0523 cobO; possible cob(I)alamin adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D PMM1570 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D PMM1160 cobB; Cobyric acid synthase CobB K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10]
D PMM1316 cobD; putative cobalamin biosynthetic protein K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10]
D PMM0863 cobU_cobP; putative cobinamide kinase K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62]
D PMM0270 CobS; Cobalamin-5-phosphate synthase CobS K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26]
D PMM0831 chlH; protoporphyrin IX magnesium chelatase, subunit chlH K03403 chlH; magnesium chelatase subunit H [EC:6.6.1.1]
D PMM0288 chlD; Protoporphyrin IX Magnesium chelatase, ChlD subunit K03404 chlD; magnesium chelatase subunit D [EC:6.6.1.1]
D PMM1055 chlI; Protoporphyrin IX Magnesium chelatase, ChlI subunit K03405 chlI; magnesium chelatase subunit I [EC:6.6.1.1]
D PMM0168 chlM; Mg-protoporphyrin IX methyltransferase K03428 bchM; magnesium-protoporphyrin O-methyltransferase [EC:2.1.1.11]
D PMM0844 PNIL34; phytochrome-regulated gene K04035 E1.14.13.81; magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase [EC:1.14.13.81]
D PMM1361 Short-chain dehydrogenase/reductase (SDR) superfamily K00218 por; protochlorophyllide reductase [EC:1.3.1.33]
D PMM0634 por; possible light-dependent protochlorophyllide oxido-reductase K00218 por; protochlorophyllide reductase [EC:1.3.1.33]
D PMM0542 por; Light dependent protochlorophyllide oxido-reductase K00218 por; protochlorophyllide reductase [EC:1.3.1.33]
D PMM0543 chlL; Protochlorophyllide reductase iron-sulfur ATP-binding protein K04037 chlL; light-independent protochlorophyllide reductase subunit L [EC:1.3.7.7]
D PMM0545 chlN; Light-independent protochlorophyllide reductase subunit N K04038 chlN; light-independent protochlorophyllide reductase subunit N [EC:1.3.7.7]
D PMM0544 chlB; Light-independent protochlorophyllide reductase subunit B K04039 chlB; light-independent protochlorophyllide reductase subunit B [EC:1.3.7.7]
D PMM0428 chlG; chlorophyll synthase 33 kD subunit K04040 chlG; chlorophyll/bacteriochlorophyll a synthase [EC:2.5.1.62 2.5.1.133]
D PMM0760 chlP; Aromatic-ring hydroxylase (flavoprotein monooxygenase) K10960 chlP; geranylgeranyl diphosphate/geranylgeranyl-bacteriochlorophyllide a reductase [EC:1.3.1.83 1.3.1.111]
D PMM1594 ho1; Heme oxygenase K21480 HO; heme oxygenase (biliverdin-producing, ferredoxin) [EC:1.14.15.20]
D PMM1593 pebA; phycoerythrobilin:ferredoxin oxidoreductase K05369 pebA; 15,16-dihydrobiliverdin:ferredoxin oxidoreductase [EC:1.3.7.2]
D PMM1592 pebB; phycoerythrobilin:ferredoxin oxidoreductase K05370 pebB; phycoerythrobilin:ferredoxin oxidoreductase [EC:1.3.7.3]
D PMM0747 pcyA; ferredoxin-dependent biliverdin reductase K05371 pcyA; phycocyanobilin:ferredoxin oxidoreductase [EC:1.3.7.5]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:pmm00130]
D PMM1676 conserved hypothetical protein K03181 ubiC; chorismate lyase [EC:4.1.3.40]
D PMM0456 ubiA; probable 4-hydroxybenzoate-octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D PMM0834 ubiH; possible 2-octaprenyl-6-methoxyphenol 4-monoxygenase; UbiH K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
D PMM0177 menF; Isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
D PMM0607 menD; Menaquinone biosynthesis protein; probable 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9]
D PMM0175 menC; putative O-succinylbenzoate synthase K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113]
D PMM0174 menE; probable O-succinylbenzoic acid--CoA ligase (OSB-CoA synthetase) K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26]
D PMM0608 menB; Napthoate synthase K01661 menB; naphthoate synthase [EC:4.1.3.36]
D PMM0173 conserved hypothetical protein K12073 E3.1.2.28; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28]
D PMM0176 menA; 1,4-dihydroxy-2-naphthoate (DHNA) octaprenyltransferase; UbiA prenyltranferase family K23094 ABC4; 2-carboxy-1,4-naphthoquinone phytyltransferase [EC:2.5.1.130]
D PMM0082 putative NADH dehydrogenase, transport associated K17872 NDC1; demethylphylloquinone reductase [EC:1.6.5.12]
D PMM0431 conserved hypothetical protein K23095 MENG; demethylphylloquinol methyltransferase [EC:2.1.1.329]
D PMM1505 SAM (and some other nucleotide) binding motif K18534 K18534; MPBQ/MSBQ methyltransferase [EC:2.1.1.295]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:pmm00900]
D PMM0907 Dxs; 1-deoxy-D-xylulose 5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D PMM1142 dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D PMM0454 ispD; putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D PMM0932 ispE; Putative 4-diphosphocytidyl-2C-methyl-D-erythritol kinase (CMK) K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D PMM1280 putative bifuntional enzyme: tRNA methyltransferase; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D PMM0676 gcpE; GcpE protein K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D PMM0264 lytB; LytB protein homolog K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D PMM1070 crtE; Polyprenyl synthetase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D PMM0618 sds; polyprenyl synthetase; solanesyl diphosphate synthase (sds) K05356 SPS; all-trans-nonaprenyl-diphosphate synthase [EC:2.5.1.84 2.5.1.85]
D PMM1092 uppS; Undecaprenyl pyrophosphate synthetase (UPPS) K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D PMM0760 chlP; Aromatic-ring hydroxylase (flavoprotein monooxygenase) K10960 chlP; geranylgeranyl diphosphate/geranylgeranyl-bacteriochlorophyllide a reductase [EC:1.3.1.83 1.3.1.111]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis [PATH:pmm00906]
D PMM0143 crtB; Squalene and phytoene synthases K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32]
D PMM0144 pds; phytoene desaturase K02293 PDS; 15-cis-phytoene desaturase [EC:1.3.5.5]
D PMM0148 conserved hypothetical protein K15744 Z-ISO; zeta-carotene isomerase [EC:5.2.1.12]
D PMM0115 crtQ; zeta-carotene desaturase K00514 ZDS; zeta-carotene desaturase [EC:1.3.5.6]
D PMM1115 crtH; putative carotenoid isomerase K09835 crtISO; prolycopene isomerase [EC:5.2.1.13]
D PMM1064 crtL1; putative lycopene beta cyclase K06443 lcyB; lycopene beta-cyclase [EC:5.5.1.19]
D PMM0633 crtL2; putative lycopene epsilon cyclase K06443 lcyB; lycopene beta-cyclase [EC:5.5.1.19]
D PMM1806 Beta-carotene hydroxylase K02294 crtR; beta-carotene hydroxylase [EC:1.14.13.-]
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
D PMM0331 Putative aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00907 Pinene, camphor and geraniol degradation
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D PMM1235 possible N-terminal fragment of transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D PMM1236 unknown K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D PMM1610 tktA; Transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:pmm00523]
D PMM1260 Nucleoside-diphosphate-sugar epimerase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D PMM1257 possible dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D PMM1233 rfbD; putative dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
D PMM0177 menF; Isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
C 01055 Biosynthesis of vancomycin group antibiotics
D PMM1260 Nucleoside-diphosphate-sugar epimerase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D PMM1257 possible dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis [PATH:pmm00332]
D PMM0788 proB; putative glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D PMM0590 proA; Gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:pmm00261]
D PMM0227 cysD; ATP-sulfurylase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D PMM1648 lysC; Aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D PMM1654 asd; aspartate Semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D PMM1653 dapA; Dihydrodipicolinate synthetase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D PMM0832 dapB; Dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:pmm00521]
D PMM0596 Putative glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D PMM0076 pgm; Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D PMM0899 Possible myo-inositol-1(or 4)-monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D PMM0096 inositol monophosphate family protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D PMM1260 Nucleoside-diphosphate-sugar epimerase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D PMM1257 possible dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D PMM1233 rfbD; putative dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D PMM0596 Putative glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis
D PMM1260 Nucleoside-diphosphate-sugar epimerase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D PMM1257 possible dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:pmm00401]
D PMM0674 aspC; Aminotransferases class-I K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D PMM0186 hisC; Aminotransferases class-I K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D PMM1577 trpE; Anthranilate synthase component I and chorismate binding enzyme K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D PMM0137 fabD; Malonyl coenzyme A-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D PMM0453 fabG; 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PMM0282 fabI; enoyl-[acyl-carrier-protein] reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D PMM1608 acpP; acyl carrier protein (ACP) K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites
D PMM0311 metK; S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation
C 00627 Aminobenzoate degradation
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation [PATH:pmm00625]
D PMM1234 Zinc-containing alcohol dehydrogenase superfamily K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D PMM0331 Putative aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00361 Chlorocyclohexane and chlorobenzene degradation
C 00623 Toluene degradation
C 00622 Xylene degradation
C 00633 Nitrotoluene degradation
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation
C 00791 Atrazine degradation
D PMM0963 ureC; Urease alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D PMM0964 ureB; Urease beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5]
D PMM0965 ureA; Urease gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5]
C 00930 Caprolactam degradation
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
C 00626 Naphthalene degradation [PATH:pmm00626]
D PMM1234 Zinc-containing alcohol dehydrogenase superfamily K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:pmm03020]
D PMM1485 rpoB; RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D PMM1483 rpoC2; RNA polymerase beta prime subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D PMM1484 rpoC1; RNA polymerase gamma subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D PMM1535 rpoA; Bacterial RNA polymerase, alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D PMM1431 rpoZ; putative DNA-directed RNA polymerase (omega chain) K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:pmm03010]
D PMM0312 rps1a; 30S ribosomal protein S1, homolog A K02945 RP-S1; small subunit ribosomal protein S1
D PMM0530 rps1b; 30S ribosomal protein S1 homolog B, putative Nbp1 K02945 RP-S1; small subunit ribosomal protein S1
D PMM0753 rps2; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D PMM1552 rps3; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D PMM0410 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D PMM1542 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D PMM1706 rps6; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D PMM1510 rps7; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D PMM1545 rps8; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D PMM1531 rps9; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D PMM1507 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D PMM1536 rps11; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D PMM1511 rps12; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D PMM1537 rps13; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D PMM1190 rps14; 30S Ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D PMM0943 rps15; 30S Ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D PMM1285 rps16; 30S Ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D PMM1549 rps17; 30S Ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D PMM0869 rps18; 30S Ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D PMM1554 rps19; 30S Ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D PMM1487 rpsT; 30s Ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D PMM0987 rps21; 30S Ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D PMM0203 rpl1; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D PMM1555 rpl2; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D PMM1558 rpl3; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D PMM1557 rpl4; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D PMM1546 rpl5; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D PMM1544 rpl6; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D PMM0201 rpl12; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D PMM1673 rpl9; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D PMM0202 rpl10; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D PMM0204 rpl11; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D PMM1532 rpl13; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D PMM1548 rpl14; 50S Ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D PMM1541 rpl15; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D PMM1551 rpl16; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D PMM1534 rpl17; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D PMM1543 rpl18; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D PMM0475 rpl19; Ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D PMM1662 rpl20; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D PMM1344 rpl21; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D PMM1553 rpl22; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D PMM1556 rpl23; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D PMM1547 rpl24; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D PMM1345 rpl27; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D PMM0902 rpl28; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D PMM1550 rpl29; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D PMM1530 rpl31; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D PMM0853 rpl32; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D PMM0870 rpl33; 50S Ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D PMM1183 rpl34; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D PMM1661 rpl35; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D PMM1538 rpmJ; 50S Ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D RNA_39 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RNA_40 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RNA_41 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:pmm00970]
D RNA_22 tRNA-Ala2; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RNA_4 tRNA-Ala1; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RNA_36 tRNA-Arg4; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RNA_19 tRNA-Arg3; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RNA_15 tRNA-Arg2; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RNA_10 tRNA-Arg1; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RNA_1 tRNA-Asn1; tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D RNA_30 tRNA-Asp1; tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D RNA_16 tRNA-Cys1; tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D RNA_14 tRNA-Gln1; tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D RNA_24 tRNA-Glu1; tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D RNA_21 tRNA-Gly2; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RNA_18 tRNA-Gly1; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RNA_12 tRNA-His1; tRNA-His K14226 tRNA-His; tRNA His
D RNA_3 tRNA-Ile1; tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D RNA_11 tRNA-Leu3; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RNA_37 tRNA-Leu4; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RNA_5 tRNA-Leu2; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RNA_2 tRNA-Leu1; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RNA_8 tRNA-Lys1; tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D RNA_26 tRNA-Met1; tRNA-Met K14230 tRNA-Met; tRNA Met
D RNA_27 tRNA-Met2; tRNA-Met K14230 tRNA-Met; tRNA Met
D RNA_35 tRNA-Met3; tRNA-Met K14230 tRNA-Met; tRNA Met
D RNA_34 tRNA-Phe1; tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D RNA_9 tRNA-Pro2; tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D RNA_7 tRNA-Pro1; tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D RNA_25 tRNA-Ser3; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RNA_23 tRNA-Ser2; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RNA_20 tRNA-Ser1; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RNA_28 tRNA-Ser4; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RNA_6 tRNA-Thr1; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RNA_32 tRNA-Thr2; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RNA_33 tRNA-Thr3; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RNA_29 tRNA-Trp1; tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D RNA_31 tRNA-Tyr1; tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D RNA_13 tRNA-Val1; tRNA-Val K14237 tRNA-Val; tRNA Val
D RNA_17 tRNA-Val2; tRNA-Val K14237 tRNA-Val; tRNA Val
D PMM0473 gltX; Glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PMM0946 gatA; Glutamyl-tRNA(Gln) amidotransferase A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D PMM0048 gatB; Glutamyl-tRNA (Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D PMM0235 gatC; Glutamyl-tRNA(Gln) amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D PMM0044 alaS; Alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PMM1688 aspS; Aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D PMM1165 glyQ; Glycyl-tRNA synthetase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D PMM0759 glyS; Glycyl-tRNA synthetase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D PMM0597 thrS; Threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D PMM1188 serS; Seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D PMM1141 cysS; Cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D PMM0867 metG; Methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D PMM0841 fmt; putative Methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D PMM1682 valS; Valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D PMM0889 leuS; Leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D PMM0238 ileS; Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D PMM1618 lysS; Lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D PMM0187 argS; Arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D PMM0508 proS; Prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D PMM0623 hisS; Histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D PMM1270 pheS; Phenylalanyl-tRNA synthetase alpha chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D PMM0871 pheT; Phenylalanyl-tRNA synthetase beta chain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D PMM1329 tyrS; Tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D PMM0598 trpS; Tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:pmm03060]
D PMM1540 secY; preprotein translocase SecY subunit K03076 secY; preprotein translocase subunit SecY
D PMM0206 secE; putative preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D PMM1435 conserved hypothetical protein K03075 secG; preprotein translocase subunit SecG
D PMM0929 secD; preprotein translocase subunit K03072 secD; preprotein translocase subunit SecD
D PMM0928 secF; preprotein translocase subunit K03074 secF; preprotein translocase subunit SecF
D PMM1186 Putative inner membrane protein; similar to 60 kDa inner membrane protein family K03217 yidC; YidC/Oxa1 family membrane protein insertase
D PMM1639 secA; Preprotein translocase SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D PMM1286 ffh; signal recognition particle protein (SRP54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D RNA_44 ffs; signal recognition particle RNA (4.5 S RNA) K01983 ffs; SRP RNA
D PMM0010 ftsY; signal recognition particle docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D PMM0374 mttA/Hcf106 family K03116 tatA; sec-independent protein translocase protein TatA
D PMM0343 mttA/Hcf106 family K03116 tatA; sec-independent protein translocase protein TatA
D PMM0464 protein secretion component, Tat family K03118 tatC; sec-independent protein translocase protein TatC
D PMM0513 lepB; Signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D PMM0606 lepB; leader peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D PMM0915 putative lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:pmm04122]
D PMM0170 NifS-like aminotransferase class-V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D PMM0887 nifS; possible cysteine desulfurase (class-V aminotransferase family) K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D PMM1291 tRNA methyl transferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D PMM1569 moeB; molybdopterin biosynthesis protein K21147 moeZR; sulfur-carrier protein adenylyltransferase/sulfurtransferase [EC:2.7.7.80 2.7.7.- 2.8.1.11 2.8.1.-]
D PMM1275 DUF170 K03154 thiS; sulfur carrier protein
C 03050 Proteasome
C 03018 RNA degradation [PATH:pmm03018]
D PMM1501 S1 RNA binding domain:Ribonuclease E and G K08300 rne; ribonuclease E [EC:3.1.26.12]
D PMM0208 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D PMM1191 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D PMM0847 zam; putative acetazolamide conferring resistance protein Zam K12573 rnr; ribonuclease R [EC:3.1.13.1]
D PMM1101 putative ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D PMM1652 conserved hypothetical protein K12574 rnj; ribonuclease J [EC:3.1.-.-]
D PMM1704 dnaK2; Molecular chaperone DnaK2, heat shock protein hsp70-2 K04043 dnaK; molecular chaperone DnaK
D PMM0897 dnaK; Molecular chaperone DnaK, heat shock protein hsp70 K04043 dnaK; molecular chaperone DnaK
D PMM0452 groEL2; GroEL2 protein (Chaperonin cpn60 2) K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D PMM1436 groEL; GroEL protein (Chaperonin cpn60) K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D PMM1696 ppk; putative Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D PMM0303 tRNA nucleotidyltransferase/poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:pmm03030]
D PMM0621 dnaQ; possible DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PMM0945 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D PMM1658 dnaX; DNA polymerase, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D PMM0129 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D PMM1647 conserved hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D PMM0001 dnaN; DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D PMM1674 dnaB; DnaB replicative helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D PMM0939 CHC2 zinc finger:Toprim domain K02316 dnaG; DNA primase [EC:2.7.7.101]
D PMM1623 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D PMM0200 rnhA; possible ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D PMM1502 Ribonuclease HII and HIII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D PMM0659 NAD-dependent DNA ligase N-terminus K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:pmm03410]
D PMM0802 putative endonuclease K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D PMM0234 possible Methylpurine-DNA glycosylase (MPG) K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
D PMM0328 FPG; Formamidopyrimidine-DNA glycolase (FAPY-DNA glycolase) K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D PMM0675 Uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D PMM0484 xthA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D PMM0659 NAD-dependent DNA ligase N-terminus K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:pmm03420]
D PMM0839 Transcriptional-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D PMM1712 uvrA; Excinuclease ABC, A subunit, ATP/GTP-binding site motif A (P-loop):ABC transporter K03701 uvrA; excinuclease ABC subunit A
D PMM1649 uvrB; Excinuclease ABC subunit B (UvrB) K03702 uvrB; excinuclease ABC subunit B
D PMM0882 uvrC; Excinuclease ABC subunit C (UvrC) K03703 uvrC; excinuclease ABC subunit C
D PMM0304 uvrD; UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D PMM0659 NAD-dependent DNA ligase N-terminus K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:pmm03430]
D PMM1645 mutS; putative DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS
D PMM0217 mutS; putative DNA mismatch repair protein MutS family K07456 mutS2; DNA mismatch repair protein MutS2
D PMM0304 uvrD; UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D PMM1623 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D PMM0945 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D PMM0001 dnaN; DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D PMM1658 dnaX; DNA polymerase, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D PMM1647 conserved hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D PMM0129 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D PMM0621 dnaQ; possible DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PMM0659 NAD-dependent DNA ligase N-terminus K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03440 Homologous recombination [PATH:pmm03440]
D PMM1623 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D PMM1573 recF; putative DNA repair and genetic recombination protein RecF K03629 recF; DNA replication and repair protein RecF
D PMM0398 possible Recombination protein O (RecO) K03584 recO; DNA repair protein RecO (recombination protein O)
D PMM1097 recR; RecR protein K06187 recR; recombination protein RecR
D PMM1562 recA; RecA bacterial DNA recombination protein K03553 recA; recombination protein RecA
D PMM0942 ruvA; putative holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D PMM1615 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D PMM1054 ruvC; Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D PMM0756 recG; ATP-dependent DNA helicase recG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D PMM1103 recB; possible UvrD/REP helicase subunit B K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D PMM1105 recC; possible exodeoxyribonuclease V subunit C 125 kD polypeptide K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D PMM1102 recD; possible exodeoxyribonuclease V 67 kD polypeptide K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D PMM0945 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D PMM0001 dnaN; DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D PMM1658 dnaX; DNA polymerase, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D PMM1647 conserved hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D PMM0129 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D PMM0621 dnaQ; possible DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PMM0497 priA; primosomal protein N' (replication factor Y) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1 [PATH:pmm03250]
D PMM1155 ppiA; Cyclophilin-type peptidyl-prolyl cis-trans isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus and Lyssavirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:pmm02010]
D PMM0370 putative cyanate ABC transporter, substrate binding protein K15576 nrtA; nitrate/nitrite transport system substrate-binding protein
D PMM0371 putative cyanate ABC transporter K15577 nrtB; nitrate/nitrite transport system permease protein
D PMM0372 putative cyanate ABC transporter K15578 nrtC; nitrate/nitrite transport system ATP-binding protein [EC:7.3.2.4]
D PMM1164 futA; putative iron ABC transporter, substrate binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D PMM0489 futB; putative iron ABC transporter K02011 afuB; iron(III) transport system permease protein
D PMM0803 futC; ABC transporter, ATP binding component, possibly iron transporter K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D PMM0289 possible ABC transporter K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D PMM1324 possible transporter, membrane component K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D PMM0290 possible ABC transporter, ATP binding component K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D PMM0710 ABC transporter, substrate binding protein, phosphate K02040 pstS; phosphate transport system substrate-binding protein
D PMM0723 pstC; putative phosphate ABC transporter K02037 pstC; phosphate transport system permease protein
D PMM0724 pstA; putative phosphate ABC transporter K02038 pstA; phosphate transport system permease protein
D PMM0725 putative phosphate ABC transporter, ATP binding subunit K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D PMM0673 Putative phosphonate binding protein for ABC transporter K02044 phnD; phosphonate transport system substrate-binding protein
D PMM0671 putative phosphonate ABC transporter K02042 phnE; phosphonate transport system permease protein
D PMM0672 Putative phosphonate ABC transporter K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D PMM0970 urtA; putative urea ABC transporter, substrate binding protein K11959 urtA; urea transport system substrate-binding protein
D PMM0971 urtB; putative urea ABC transporter K11960 urtB; urea transport system permease protein
D PMM0972 urtC; putative membrane protein of urea ABC transport system K11961 urtC; urea transport system permease protein
D PMM0973 urtD; putative ATP binding subunit of urea ABC transport system K11962 urtD; urea transport system ATP-binding protein
D PMM0974 urtE; Putative ATP-binding subunit of urea ABC transport system K11963 urtE; urea transport system ATP-binding protein
D PMM0601 ABC transporter, substrate binding protein, possibly Mn K11601 mntC; manganese transport system substrate-binding protein
D PMM0603 ABC transporter component, possibly Mn transport K11602 mntB; manganese transport system permease protein
D PMM0602 ABC transporter, ATP binding domain, possibly Mn transporter K11603 mntA; manganese transport system ATP-binding protein [EC:7.2.2.5]
D PMM0914 conserved hypothetical protein K03523 bioY; biotin transport system substrate-specific component
D PMM0392 possible cobalt transport protein K16785 ecfT; energy-coupling factor transport system permease protein
D PMM0125 possible ABC transporter, ATP-binding component K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D PMM0666 possible ABC transporter, ATP-binding component K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D PMM1386 possible permease K11720 lptG; lipopolysaccharide export system permease protein
D PMM0764 possible ABC transporter, ATP binding component K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D PMM0954 ABC transporter, multidrug efflux family K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D PMM0561 putative multidrug efflux ABC transporter K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D PMM0065 ABC transporter, ATP binding protein K02471 bacA; vitamin B12/bleomycin/antimicrobial peptide transport system ATP-binding/permease protein
C 02060 Phosphotransferase system (PTS)
C 03070 Bacterial secretion system [PATH:pmm03070]
D PMM0929 secD; preprotein translocase subunit K03072 secD; preprotein translocase subunit SecD
D PMM0928 secF; preprotein translocase subunit K03074 secF; preprotein translocase subunit SecF
D PMM0206 secE; putative preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D PMM1435 conserved hypothetical protein K03075 secG; preprotein translocase subunit SecG
D PMM1540 secY; preprotein translocase SecY subunit K03076 secY; preprotein translocase subunit SecY
D PMM1186 Putative inner membrane protein; similar to 60 kDa inner membrane protein family K03217 yidC; YidC/Oxa1 family membrane protein insertase
D PMM1639 secA; Preprotein translocase SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D PMM0010 ftsY; signal recognition particle docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D PMM1286 ffh; signal recognition particle protein (SRP54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D PMM0374 mttA/Hcf106 family K03116 tatA; sec-independent protein translocase protein TatA
D PMM0343 mttA/Hcf106 family K03116 tatA; sec-independent protein translocase protein TatA
D PMM0464 protein secretion component, Tat family K03118 tatC; sec-independent protein translocase protein TatC
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:pmm02020]
D PMM0706 phoR; two-component sensor histidine kinase, phosphate sensing K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D PMM0705 phoB; two-component response regulator, phosphate K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D PMM0710 ABC transporter, substrate binding protein, phosphate K02040 pstS; phosphate transport system substrate-binding protein
D PMM0447 conserved hypothetical protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D PMM0565 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D PMM0601 ABC transporter, substrate binding protein, possibly Mn K11601 mntC; manganese transport system substrate-binding protein
D PMM0602 ABC transporter, ATP binding domain, possibly Mn transporter K11603 mntA; manganese transport system ATP-binding protein [EC:7.2.2.5]
D PMM0603 ABC transporter component, possibly Mn transport K11602 mntB; manganese transport system permease protein
D PMM1341 nblS; two-component sensor histidine kinase K07769 nblS; two-component system, OmpR family, sensor histidine kinase NblS [EC:2.7.13.3]
D PMM1077 two-component sensor histidine kinase K08479 sasA; two-component system, OmpR family, clock-associated histidine kinase SasA [EC:2.7.13.3]
D PMM0128 rpaA; two-component response regulator K10697 rpaA; two-component system, OmpR family, response regulator RpaA
D PMM0134 rpaB; two-component response regulator K11329 rpaB; two-component system, OmpR family, response regulator RpaB
D PMM0757 D-ala-D-ala dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D PMM0761 putative carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D PMM1378 des; Fatty acid desaturase, type 2 K10255 FAD6; acyl-lipid omega-6 desaturase (Delta-12 desaturase) [EC:1.14.19.23 1.14.19.45]
D PMM1463 glnB; Nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1
D PMM0920 glnA; Glutamine synthetase, glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PMM1224 gumB; putative polysaccharide export protein K01991 wza; polysaccharide biosynthesis/export protein
D PMM1211 possible polysaccharide export or synthesis protein K01991 wza; polysaccharide biosynthesis/export protein
D PMM1591 Low molecular weight phosphotyrosine protein phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]
D PMM1225 conserved hypothetical protein K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:pmm02024]
D PMM1577 trpE; Anthranilate synthase component I and chorismate binding enzyme K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D PMM1699 aroF; DAHP synthetase class I K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D PMM0367 conserved hypothetical protein K11530 lsrG; (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase [EC:5.3.1.32]
D PMM0402 fadD; putative long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D PMM1265 ribD; putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D PMM1049 ABC transporter, substrate binding protein, possibly oligopeptides K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D PMM1048 putative ABC transporter, oligopeptides K02033 ABC.PE.P; peptide/nickel transport system permease protein
D PMM0421 putative ABC transporter, oligopeptides K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D PMM0192 ABC transporter, ATP binding component, possibly for oligopeptides K02031 ddpD; peptide/nickel transport system ATP-binding protein
D PMM1186 Putative inner membrane protein; similar to 60 kDa inner membrane protein family K03217 yidC; YidC/Oxa1 family membrane protein insertase
D PMM0206 secE; putative preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D PMM1435 conserved hypothetical protein K03075 secG; preprotein translocase subunit SecG
D PMM1540 secY; preprotein translocase SecY subunit K03076 secY; preprotein translocase subunit SecY
D PMM1639 secA; Preprotein translocase SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D PMM0010 ftsY; signal recognition particle docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D PMM1286 ffh; signal recognition particle protein (SRP54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis
C 02040 Flagellar assembly
D PMM1697 Type II alternative RNA polymerase sigma factor, sigma-70 family K03086 rpoD; RNA polymerase primary sigma factor
D PMM1289 Type II alternative RNA polymerase sigma factor, sigma-70 family K03086 rpoD; RNA polymerase primary sigma factor
D PMM0496 sigA; Putative principal RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D PMM0208 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism [PATH:pmm04980]
D PMM0245 cob(I)alamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D PMM0877 metH; putative methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:pmm01501]
D PMM0427 putative penicillin binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D PMM0040 Putative penicillin-binding protein K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D PMM0518 ftsI; putative peptidoglycan synthetase (pbp transpeptidase domain) K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:pmm01502]
D PMM0757 D-ala-D-ala dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D PMM1306 ddlA; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D PMM1527 alr; putative Alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D PMM0610 murF; Cytoplasmic peptidoglycan synthetase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D PMM1709 mraY; Putative phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D PMM0197 murG; Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D PMM0761 putative carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:pmm01503]
D PMM0616 Cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D PMM1155 ppiA; Cyclophilin-type peptidyl-prolyl cis-trans isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D PMM1335 lpxA; UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:pmm01000]
C 01001 Protein kinases [BR:pmm01001]
D PMM0923 conserved hypothetical protein K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1]
D PMM1225 conserved hypothetical protein K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
D PMM0706 phoR; two-component sensor histidine kinase, phosphate sensing K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D PMM1341 nblS; two-component sensor histidine kinase K07769 nblS; two-component system, OmpR family, sensor histidine kinase NblS [EC:2.7.13.3]
D PMM1077 two-component sensor histidine kinase K08479 sasA; two-component system, OmpR family, clock-associated histidine kinase SasA [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:pmm01009]
D PMM1625 ahcY; putative adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D PMM0901 htpG; heat shock protein HtpG K04079 HSP90A; molecular chaperone HtpG
D PMM1380 unknown K17623 PUDP; pseudouridine 5'-phosphatase [EC:3.1.3.96]
C 01002 Peptidases and inhibitors [BR:pmm01002]
D PMM0915 putative lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
D PMM0037 guaA; Glutamine amidotransferase class-I:GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D PMM0330 possible LysM domain K19223 lytF; peptidoglycan DL-endopeptidase LytF [EC:3.4.-.-]
D PMM0004 purF; Glutamine amidotransferase class-II:Phosphoribosyl transferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D PMM1512 glsF; Ferredoxin-dependent glutamate synthase, Fd-GOGAT K00284 GLU; glutamate synthase (ferredoxin) [EC:1.4.7.1]
D PMM1606 glmS; Glutamine--fructose-6-phosphate transaminase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D PMM0352 Abortive infection protein K07052 K07052; CAAX protease family protein
D PMM0516 Possible membrane associated protease K07052 K07052; CAAX protease family protein
D PMM1002 pepN; probable aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D PMM0593 Peptidase family M3 K01414 prlC; oligopeptidase A [EC:3.4.24.70]
D PMM0761 putative carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D PMM0757 D-ala-D-ala dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D PMM1332 Cytosol aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D PMM0477 map; putative methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D PMM1442 pepP; putative aminopeptidase P K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D PMM0493 cxp; Carboxypeptidase Taq (M32) metallopeptidase K01299 E3.4.17.19; carboxypeptidase Taq [EC:3.4.17.19]
D PMM0854 ftsH4; cell division protein FtsH4 K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D PMM0226 ftsH2; cell division protein FtsH2 K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D PMM0743 ftsH1; FtsH ATP-dependent protease homolog K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D PMM1264 ftsH3; cell division protein FtsH3 K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D PMM0885 dacB; putative D-Ala-D-Ala carboxypeptidase 3 (S13) family K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D PMM0742 clpP1; Clp protease subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D PMM1313 clpP4; Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D PMM1314 clpP3; Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D PMM1656 clpP2; Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D PMM1506 ATP-dependent protease La (LON) domain K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D PMM1262 lexA; SOS function regulatory protein, LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D PMM0936 putative SOS mutagenesis protein UmuD K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D PMM0513 lepB; Signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D PMM0606 lepB; leader peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D PMM0356 proline iminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D PMM0677 carboxyl-terminal processing protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D PMM0324 ctpA; carboxyl-terminal processing proteinase precursor K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D PMM1180 sppA; signal peptide peptidase SppA (protease IV) K04773 sppA; protease IV [EC:3.4.21.-]
D PMM0993 conserved hypothetical protein K05995 pepE; dipeptidase E [EC:3.4.13.21]
D PMM0455 conserved hypothetical protein K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
D PMM0842 pmbA; possible modulator of DNA gyrase K03592 pmbA; PmbA protein
D PMM0843 tldD; putative modulator of DNA gyrase; TldD K03568 tldD; TldD protein
C 01003 Glycosyltransferases [BR:pmm01003]
D PMM1199 conserved hypothetical protein K00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83]
D PMM1659 Glycosyl transferase, family 2 K19003 mgdA; 1,2-diacylglycerol 3-beta-glucosyltransferase [EC:2.4.1.336]
D PMM0609 Putative ADPglucose--glucosyltransferase (GlgA) K00703 glgA; starch synthase [EC:2.4.1.21]
D PMM0427 putative penicillin binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D PMM0962 possible Vng0271c K13693 gpgS; glucosyl-3-phosphoglycerate synthase [EC:2.4.1.266]
D PMM1178 Glycosyl transferases group 1 K03867 BGLUT; UDP-glucose:tetrahydrobiopterin glucosyltransferase [EC:2.4.1.-]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:pmm01005]
D PMM1335 lpxA; UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D PMM1334 lpxB; Lipid-A-disaccharide synthetase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D PMM1337 lpxC; UDP-3-0-acyl N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D PMM0787 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D PMM1217 putative phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D PMM1214 possible phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D PMM1200 Glycosyl transferase, family 2 K20534 gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:pmm01011]
D PMM1300 putative_murA; UDP-N-glucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D PMM0021 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D PMM0022 murC; Probable UDP-N-acetylmuramate-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D PMM1364 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D PMM0413 murE; UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D PMM1306 ddlA; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D PMM1527 alr; putative Alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D PMM0617 murI; Putative aspartate and glutamate racemases:Glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D PMM0455 conserved hypothetical protein K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
D PMM1709 mraY; Putative phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D PMM0197 murG; Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D PMM0956 Bacitracin resistance protein BacA K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D PMM0261 conserved hypothetical protein K03980 murJ; putative peptidoglycan lipid II flippase
D PMM0427 putative penicillin binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D PMM0040 Putative penicillin-binding protein K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D PMM0518 ftsI; putative peptidoglycan synthetase (pbp transpeptidase domain) K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D PMM0885 dacB; putative D-Ala-D-Ala carboxypeptidase 3 (S13) family K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D PMM0757 D-ala-D-ala dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
D PMM0761 putative carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D PMM0330 possible LysM domain K19223 lytF; peptidoglycan DL-endopeptidase LytF [EC:3.4.-.-]
D PMM1348 spoIID; possible sporulation protein SpoIID K06381 spoIID; stage II sporulation protein D (peptidoglycan lytic transglycosylase) [EC:4.2.2.29]
D PMM0616 Cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:pmm01004]
D PMM0137 fabD; Malonyl coenzyme A-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D PMM0136 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D PMM1609 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D PMM0453 fabG; 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D PMM1336 Putative (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D PMM0282 fabI; enoyl-[acyl-carrier-protein] reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D PMM1378 des; Fatty acid desaturase, type 2 K10255 FAD6; acyl-lipid omega-6 desaturase (Delta-12 desaturase) [EC:1.14.19.23 1.14.19.45]
D PMM0619 acs; acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D PMM0402 fadD; putative long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D PMM0135 plsX; fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D PMM1327 conserved hypothetical protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D PMM0138 plsC; putative 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins
C 01006 Prenyltransferases [BR:pmm01006]
D PMM1070 crtE; Polyprenyl synthetase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D PMM0618 sds; polyprenyl synthetase; solanesyl diphosphate synthase (sds) K05356 SPS; all-trans-nonaprenyl-diphosphate synthase [EC:2.5.1.84 2.5.1.85]
D PMM1092 uppS; Undecaprenyl pyrophosphate synthetase (UPPS) K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D PMM0143 crtB; Squalene and phytoene synthases K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32]
D PMM1635 miaA; tRNA delta-2-isopentenylpyrophosphate (IPP) transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D PMM0456 ubiA; probable 4-hydroxybenzoate-octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D PMM0448 ctaB; putative protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D PMM0428 chlG; chlorophyll synthase 33 kD subunit K04040 chlG; chlorophyll/bacteriochlorophyll a synthase [EC:2.5.1.62 2.5.1.133]
C 01007 Amino acid related enzymes [BR:pmm01007]
D PMM0473 gltX; Glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PMM1329 tyrS; Tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D PMM0598 trpS; Tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D PMM1141 cysS; Cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D PMM0187 argS; Arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D PMM0867 metG; Methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D PMM0238 ileS; Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D PMM1682 valS; Valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D PMM0889 leuS; Leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D PMM1618 lysS; Lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D PMM1688 aspS; Aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D PMM0623 hisS; Histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D PMM1165 glyQ; Glycyl-tRNA synthetase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D PMM0759 glyS; Glycyl-tRNA synthetase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D PMM1188 serS; Seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D PMM0508 proS; Prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D PMM0597 thrS; Threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D PMM0044 alaS; Alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PMM1270 pheS; Phenylalanyl-tRNA synthetase alpha chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D PMM0871 pheT; Phenylalanyl-tRNA synthetase beta chain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D PMM0674 aspC; Aminotransferases class-I K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D PMM1500 putative aminotransferase K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83]
D PMM0186 hisC; Aminotransferases class-I K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D PMM1468 bioF; putative 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D PMM1301 argD; N-acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D PMM1472 BioA; putative diaminopelargonic acid synthase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D PMM0483 hemL; glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D PMM0878 ilvE; putative Branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D PMM0919 spt; serine:pyruvate/alanine:glyoxylate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:pmm00194]
D PMM0223 psbA; Photosystem II PsbA protein (D1) K02703 psbA; photosystem II P680 reaction center D1 protein [EC:1.10.3.9]
D PMM1157 psbD; Photosystem II PsbD protein (D2) K02706 psbD; photosystem II P680 reaction center D2 protein [EC:1.10.3.9]
D PMM1158 psbC; Photosystem II PsbC protein (CP43) K02705 psbC; photosystem II CP43 chlorophyll apoprotein
D PMM0315 psbB; Photosystem II PsbB protein (CP47) K02704 psbB; photosystem II CP47 chlorophyll apoprotein
D PMM0297 psbE; Cytochrome b559 alpha-subunit K02707 psbE; photosystem II cytochrome b559 subunit alpha
D PMM0298 psbF; Cytochrome b559 beta-subunit K02708 psbF; photosystem II cytochrome b559 subunit beta
D PMM0299 psbL; photosystem II PsbL protein K02713 psbL; photosystem II PsbL protein
D PMM0300 psbJ; photosytem II PsbJ protein K02711 psbJ; photosystem II PsbJ protein
D PMM0251 psbH; Photosystem II PsbH protein K02709 psbH; photosystem II PsbH protein
D PMM0253 photosystem II reaction center PsbI protein K02710 psbI; photosystem II PsbI protein
D PMM0272 Photosystem II protein PsbK K02712 psbK; photosystem II PsbK protein
D PMM0317 psbM; possible Photosystem II reaction center M protein (PsbM) K02714 psbM; photosystem II PsbM protein
D PMM0314 psbT; Photosystem II PsbT protein K02718 psbT; photosystem II PsbT protein
D PMM1644 psbZ; possible Photosystem II reaction center Z protein (PsbZ) K02724 psbZ; photosystem II PsbZ protein
D PMM1117 psbY; possible Photosystem II reaction center Y protein (PsbY) K02723 psbY; photosystem II PsbY protein
D PMM0507 psb27; possible Photosystem II reaction center Psb27 protein K08902 psb27; photosystem II Psb27 protein
D PMM0926 psb28; possible Photosystem II reaction center Psb28 protein K08903 psb28; photosystem II 13kDa protein
D PMM0228 psbO; Photosystem II manganese-stabilizing protein K02716 psbO; photosystem II oxygen-evolving enhancer protein 1
D PMM1098 psbP; photosystem II oxygen evolving complex protein PsbP K02717 psbP; photosystem II oxygen-evolving enhancer protein 2
D PMM0062 psbX; photosystem II PsbX protein K02722 psbX; photosystem II PsbX protein
D PMM1524 psaA; Photosystem I PsaA protein K02689 psaA; photosystem I P700 chlorophyll a apoprotein A1 [EC:1.97.1.12]
D PMM1523 psaB; Photosystem I PsaB protein K02690 psaB; photosystem I P700 chlorophyll a apoprotein A2 [EC:1.97.1.12]
D PMM1607 psaC; Photosystem I subunit PsaC K02691 psaC; photosystem I iron-sulfur center [EC:1.97.1.12]
D PMM1578 psaD; Photosystem I protein PsaD K02692 psaD; photosystem I subunit II
D PMM0329 psaE; Photosystem I PsaE protein (subunit IV) K02693 psaE; photosystem I subunit IV
D PMM0469 psaF; Photosystem I PsaF protein (subunit III) K02694 psaF; photosystem I subunit III
D PMM1520 psaI; photosystem I subunit VIII (PsaI) K02696 psaI; photosystem I subunit VIII
D PMM0468 psaJ; Photosystem I PsaJ protein (subunit IX) K02697 psaJ; photosystem I subunit IX
D PMM0906 psaK; Photosystem I PsaK protein (subunit X) K02698 psaK; photosystem I subunit X
D PMM1519 psaL; Photosystem I PsaL protein (subunit XI) K02699 psaL; photosystem I subunit XI
D PMM0540 psaM; possible photosystem I reaction centre subunit XII (PsaM) K02700 psaM; photosystem I subunit XII
D PMM0461 petA; Cytochrome f K02634 petA; apocytochrome f
D PMM0325 petB; Cytochrome b6 K02635 petB; cytochrome b6
D PMM0462 petC; Rieske iron-sulfur protein K02636 petC; cytochrome b6-f complex iron-sulfur subunit [EC:7.1.1.6]
D PMM0326 petD; PetD protein (subunit IV of the Cytochrome b6f complex) K02637 petD; cytochrome b6-f complex subunit 4
D PMM1058 petG; Cytochrome b6/f complex, subunit V K02640 petG; cytochrome b6-f complex subunit 5
D PMM0740 petN; Cytochrome b6-f complex subunit VIII K03689 petN; cytochrome b6-f complex subunit 8
D PMM0581 petE; plastocyanin K02638 petE; plastocyanin
D PMM0366 Type-1 copper (blue) domain K02638 petE; plastocyanin
D PMM0898 petF; ferredoxin, petF-like protein K02639 petF; ferredoxin
D PMM1352 petF; ferredoxin K02639 petF; ferredoxin
D PMM1449 petF; ferredoxin K02639 petF; ferredoxin
D PMM1075 petH; ferredoxin-NADP oxidoreductase (FNR) K02641 petH; ferredoxin--NADP+ reductase [EC:1.18.1.2]
D PMM1439 atpC; ATP synthase, Epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D PMM1438 atpB; H+-transporting ATP synthase beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D PMM1450 atpC; ATP synthase gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D PMM1451 atpA; H+-transporting ATP synthase alpha-subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D PMM1452 atpH; ATP synthase, delta (OSCP) subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D PMM1454 atpG; ATP synthase B/B' CF(0) K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D PMM1453 atpF; ATP synthase B/B' CF(0) K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D PMM1455 H+-transporting ATP synthase c subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D PMM1456 atpI; ATP synthase A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D PMM1457 atp1; possible ATP synthase subunit 1 K02116 atpI; ATP synthase protein I
D PMM0305 cpeB; Phycobilisome protein K05377 cpeB; phycoerythrin beta chain
D PMM0306 cpeS; phycoerythrin linker protein CpeS homolog K05382 cpeS; phycoerythrin-associated linker protein
D PMM0627 pcb; light-harvesting complex protein K08918 pcbA; chlorophyll a/b binding light-harvesting protein PcbA
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:pmm03000]
D PMM1637 possible transcriptional regulator K07978 plmA; GntR family transcriptional regulator
D PMM0637 fur; Ferric uptake regulator family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D PMM1030 Ferric uptake regulator family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D PMM0246 ntcA; Global nitrogen regulatory protein, CRP family of transcriptional regulators K21561 ntcA; CRP/FNR family transcriptional regulator, global nitrogen regulator
D PMM0714 Bacterial regulatory proteins, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D PMM0433 BirA; putative Biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D PMM0357 TENA/THI-4 protein K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D PMM1433 Phosphoribosyl transferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D PMM0313 conserved hypothetical protein K07738 nrdR; transcriptional repressor NrdR
C 03021 Transcription machinery [BR:pmm03021]
D PMM1535 rpoA; Bacterial RNA polymerase, alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D PMM1485 rpoB; RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D PMM1483 rpoC2; RNA polymerase beta prime subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D PMM1484 rpoC1; RNA polymerase gamma subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D PMM1431 rpoZ; putative DNA-directed RNA polymerase (omega chain) K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D PMM1697 Type II alternative RNA polymerase sigma factor, sigma-70 family K03086 rpoD; RNA polymerase primary sigma factor
D PMM1289 Type II alternative RNA polymerase sigma factor, sigma-70 family K03086 rpoD; RNA polymerase primary sigma factor
D PMM0496 sigA; Putative principal RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor
D PMM1629 Type II alternative RNA polymerase sigma factor, sigma-70 family K03087 rpoS; RNA polymerase nonessential primary-like sigma factor
D PMM1492 nusA; N utilization substance protein A K02600 nusA; transcription termination/antitermination protein NusA
D PMM0009 nusB; Antitermination protein NusB K03625 nusB; transcription antitermination protein NusB
D PMM0205 nusG; transcription antitermination protein, NusG K02601 nusG; transcription termination/antitermination protein NusG
D PMM0011 Protein phosphatase 2C domain K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
D PMM0923 conserved hypothetical protein K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1]
C 03019 Messenger RNA biogenesis [BR:pmm03019]
D PMM1501 S1 RNA binding domain:Ribonuclease E and G K08300 rne; ribonuclease E [EC:3.1.26.12]
D PMM1603 rnc; putative ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D PMM1652 conserved hypothetical protein K12574 rnj; ribonuclease J [EC:3.1.-.-]
D PMM0847 zam; putative acetazolamide conferring resistance protein Zam K12573 rnr; ribonuclease R [EC:3.1.13.1]
D PMM1101 putative ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D PMM0208 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D PMM1191 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D PMM1704 dnaK2; Molecular chaperone DnaK2, heat shock protein hsp70-2 K04043 dnaK; molecular chaperone DnaK
D PMM0897 dnaK; Molecular chaperone DnaK, heat shock protein hsp70 K04043 dnaK; molecular chaperone DnaK
D PMM0452 groEL2; GroEL2 protein (Chaperonin cpn60 2) K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D PMM1436 groEL; GroEL protein (Chaperonin cpn60) K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D PMM1696 ppk; putative Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D PMM0303 tRNA nucleotidyltransferase/poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
C 03041 Spliceosome
C 03011 Ribosome [BR:pmm03011]
D PMM0312 rps1a; 30S ribosomal protein S1, homolog A K02945 RP-S1; small subunit ribosomal protein S1
D PMM0530 rps1b; 30S ribosomal protein S1 homolog B, putative Nbp1 K02945 RP-S1; small subunit ribosomal protein S1
D PMM0753 rps2; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D PMM1552 rps3; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D PMM0410 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D PMM1542 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D PMM1706 rps6; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D PMM1510 rps7; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D PMM1545 rps8; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D PMM1531 rps9; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D PMM1507 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D PMM1536 rps11; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D PMM1511 rps12; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D PMM1537 rps13; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D PMM1190 rps14; 30S Ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D PMM0943 rps15; 30S Ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D PMM1285 rps16; 30S Ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D PMM1549 rps17; 30S Ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D PMM0869 rps18; 30S Ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D PMM1554 rps19; 30S Ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D PMM1487 rpsT; 30s Ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D PMM0987 rps21; 30S Ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D PMM1440 conserved hypothetical protein K19032 PSRP3; 30S ribosomal protein 3
D PMM0203 rpl1; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D PMM1555 rpl2; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D PMM1558 rpl3; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D PMM1557 rpl4; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D PMM1546 rpl5; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D PMM1544 rpl6; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D PMM1673 rpl9; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D PMM0202 rpl10; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D PMM0204 rpl11; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D PMM0201 rpl12; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D PMM1532 rpl13; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D PMM1548 rpl14; 50S Ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D PMM1541 rpl15; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D PMM1551 rpl16; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D PMM1534 rpl17; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D PMM1543 rpl18; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D PMM0475 rpl19; Ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D PMM1662 rpl20; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D PMM1344 rpl21; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D PMM1553 rpl22; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D PMM1556 rpl23; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D PMM1547 rpl24; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D PMM1345 rpl27; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D PMM0902 rpl28; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D PMM1550 rpl29; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D PMM1530 rpl31; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D PMM0853 rpl32; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D PMM0870 rpl33; 50S Ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D PMM1183 rpl34; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D PMM1661 rpl35; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D PMM1538 rpmJ; 50S Ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D RNA_41 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RNA_39 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RNA_40 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:pmm03009]
D PMM1603 rnc; putative ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D PMM1281 GTP-binding protein ERA homolog K03595 era; GTPase
D PMM1444 conserved hypothetical protein K03595 era; GTPase
D PMM0218 GTP1/OBG family K03979 obgE; GTPase [EC:3.6.5.-]
D PMM1492 nusA; N utilization substance protein A K02600 nusA; transcription termination/antitermination protein NusA
D PMM0009 nusB; Antitermination protein NusB K03625 nusB; transcription antitermination protein NusB
D PMM0205 nusG; transcription antitermination protein, NusG K02601 nusG; transcription termination/antitermination protein NusG
D PMM0658 rsuA; putative pseudouridylate synthase specific to ribosomal small subunit K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D PMM0933 putative rRNA (adenine-N6,N6)-dimethyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D PMM0426 Sun protein (Fmu protein) K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D PMM1059 conserved hypothetical protein K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D PMM0668 Conserved hypothetical protein 46 K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D PMM1475 gidB; putative glucose inhibited division protein B K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D PMM0171 conserved hypothetical protein K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D PMM1193 putative tetrapyrrole methylase family protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D PMM1464 FtsJ cell division protein:S4 domain:Hemolysin A K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D PMM0948 tRNA/rRNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D PMM0935 conserved hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D PMM0053 Putative RNA methylase family UPF0020 K25137 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173]
D PMM1481 conserved hypothetical protein K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D PMM0193 rluD; putative pseudouridylate synthase specific to ribosomal large subunit K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D PMM1089 putative ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D PMM0333 rimI; GCN5-related N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D PMM1605 rimM; possible 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
D PMM0102 possible Fe-S oxidoreductase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D PMM1353 prmA; putative methyltransferase for Ribosomal protein L11 K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D PMM1501 S1 RNA binding domain:Ribonuclease E and G K08300 rne; ribonuclease E [EC:3.1.26.12]
D PMM0791 conserved hypothetical protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D PMM0949 conserved hypothetical protein K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-]
D PMM1101 putative ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D PMM0019 conserved hypothetical protein K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D PMM0391 GTP-binding protein (HSR1-related) K03977 engA; GTPase
D PMM0194 conserved hypothetical protein K14540 rbgA; ribosome biogenesis GTPase A
D PMM0319 conserved hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D PMM0191 spoT; guanosine-3',5'-bis(diphosphate) 3'-diphosphatase, (ppGpp)ase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D PMM0112 rbfA; Ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D PMM1491 DUF150 K09748 rimP; ribosome maturation factor RimP
D PMM0828 S4 domain K14761 rlbA; ribosome-associated protein
D PMM0823 Domain of unknown function DUF143:Iojap-related protein K09710 ybeB; ribosome-associated protein
D PMM0182 conserved hypothetical protein K07042 ybeY; probable rRNA maturation factor
D PMM1138 probable GTP-binding protein K06942 ychF; ribosome-binding ATPase
C 03016 Transfer RNA biogenesis [BR:pmm03016]
D PMM1349 conserved hypothetical protein K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D PMM0141 Poly A polymerase family K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D PMM0473 gltX; Glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PMM0508 proS; Prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D PMM0238 ileS; Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D PMM0889 leuS; Leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D PMM0867 metG; Methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D PMM0187 argS; Arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D PMM1618 lysS; Lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D PMM1688 aspS; Aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D PMM0044 alaS; Alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PMM0597 thrS; Threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D PMM1188 serS; Seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D PMM1141 cysS; Cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D PMM1682 valS; Valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D PMM0623 hisS; Histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D PMM1270 pheS; Phenylalanyl-tRNA synthetase alpha chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D PMM0871 pheT; Phenylalanyl-tRNA synthetase beta chain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D PMM1329 tyrS; Tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D PMM0598 trpS; Tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D PMM0067 HIT (Histidine triad) family protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D PMM0240 conserved hypothetical protein K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D PMM1533 truA; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D PMM1347 truB; Putative tRNA pseudouridine 55 synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D PMM0170 NifS-like aminotransferase class-V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D PMM0887 nifS; possible cysteine desulfurase (class-V aminotransferase family) K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D PMM0319 conserved hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D PMM1635 miaA; tRNA delta-2-isopentenylpyrophosphate (IPP) transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D PMM0189 putative thiophen / furan oxidation protein K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D PMM1675 Glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D PMM0302 selD; Selenide,water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D PMM1192 CysQ protein homolog K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D PMM1184 rnpA; Bacterial ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D RNA_42 rnpB; bacterial ribonuclease P RNA component of ribozyme K01978 rnpB; M1 RNA
D PMM0868 probable ribonuclease II K01147 rnb; exoribonuclease II [EC:3.1.13.1]
D PMM1584 rnd; putative ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5]
D PMM1165 glyQ; Glycyl-tRNA synthetase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D PMM0759 glyS; Glycyl-tRNA synthetase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D PMM0918 putative cytidine/deoxycytidylate deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D PMM0014 conserved hypothetical protein K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
D PMM1009 putative nitrogen regulation protein NifR3 family homolog K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D PMM1305 conserved hypothetical protein K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D PMM1056 probable tRNA/rRNA methyltransferase K02533 lasT; tRNA/rRNA methyltransferase [EC:2.1.1.-]
D PMM1116 gidA; NAD binding site:Glucose inhibited division protein A family K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74]
D PMM1280 putative bifuntional enzyme: tRNA methyltransferase; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D PMM0422 tRNA/rRNA methyltransferase (SpoU) K00556 trmH; tRNA (guanosine-2'-O-)-methyltransferase [EC:2.1.1.34]
D PMM0862 putative tRNA/rRNA methyltransferase (SpoU family) K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D PMM1299 spoU; tRNA/rRNA methyltransferase (SpoU) K03437 spoU; RNA methyltransferase, TrmH family
D PMM1291 tRNA methyl transferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D PMM0116 conserved hypothetical protein K13628 iscA; iron-sulfur cluster assembly protein
D PMM0276 conserved hypothetical protein K06980 ygfZ; tRNA-modifying protein YgfZ
D PMM0388 putative similar to tRNA-(MS[2]IO[6]A)-hydroxylase K06169 miaE; tRNA 2-(methylsulfanyl)-N6-isopentenyladenosine37 hydroxylase [EC:1.14.99.69]
D PMM0406 queA; Queuosine biosynthesis protein K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D PMM1691 hypothetical ATPase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D PMM0106 6-pyruvoyl tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D PMM0579 conserved hypothetical protein K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D PMM1690 possible organic radical activating enzyme K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D PMM1461 conserved hypothetical protein K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D PMM0007 conserved hypothetical protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D PMM0925 conserved hypothetical protein K06917 selU; tRNA 2-selenouridine synthase [EC:2.9.1.3]
D PMM0271 tgt; tRNA-guanine transglycosylase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D PMM1651 conserved hypothetical protein K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D PMM0139 conserved hypothetical protein K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D PMM0470 probable o-sialoglycoprotein endopeptidase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D PMM1626 conserved hypothetical protein K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D PMM0847 zam; putative acetazolamide conferring resistance protein Zam K12573 rnr; ribonuclease R [EC:3.1.13.1]
D PMM1191 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:pmm03012]
D PMM0165 Translation initiation factor SUI1 K03113 EIF1; translation initiation factor 1
D PMM1494 infB; Translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D PMM1636 infC; Translation Initiation factor 3 K02520 infC; translation initiation factor IF-3
D PMM0089 ABC transporter, ATP binding component K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D PMM0754 tsf; putative Elongation factor Ts K02357 tsf; elongation factor Ts
D PMM1508 tufA; Elongation factor Tu K02358 tuf; elongation factor Tu
D PMM1509 fusA; Elongation factor G K02355 fusA; elongation factor G
D PMM1529 prfA; peptide chain release factor RF-1 K02835 prfA; peptide chain release factor 1
D PMM0521 frr; Ribosome recycling factor K02838 frr; ribosome recycling factor
D PMM0318 hemK; putative protein methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D PMM0250 pth; Peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D PMM1151 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D PMM0026 efp; Elongation factor P (EF-P) K02356 efp; elongation factor P
D PMM0180 prfB; peptide chain release factor RF-2 K02836 prfB; peptide chain release factor 2
D PMM0663 prfC; peptide-chain-release factor RF-3 K02837 prfC; peptide chain release factor 3
D PMM0349 Class I peptide chain release factor K15034 yaeJ; ribosome-associated protein
C 03110 Chaperones and folding catalysts [BR:pmm03110]
D PMM0580 clpB1; ATP-dependent Clp protease, Hsp 100, ATP-binding subunit ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D PMM0207 clpB2; putative ATP-dependent Clp protease, Hsp 100, ATP-binding subunit ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D PMM1088 clpC; ClpC K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC
D PMM1657 clpX; Clp protease ATP-binding subunit, ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D PMM0901 htpG; heat shock protein HtpG K04079 HSP90A; molecular chaperone HtpG
D PMM1704 dnaK2; Molecular chaperone DnaK2, heat shock protein hsp70-2 K04043 dnaK; molecular chaperone DnaK
D PMM0897 dnaK; Molecular chaperone DnaK, heat shock protein hsp70 K04043 dnaK; molecular chaperone DnaK
D PMM0452 groEL2; GroEL2 protein (Chaperonin cpn60 2) K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D PMM1436 groEL; GroEL protein (Chaperonin cpn60) K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D PMM0017 dnaJ; DnaJ protein K03686 dnaJ; molecular chaperone DnaJ
D PMM0122 possible heat shock protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D PMM0896 dnaJ2; DnaJ2 protein K05516 cbpA; curved DNA-binding protein
D PMM0665 hsp33; Hsp33 protein K04083 hslO; molecular chaperone Hsp33
D PMM0016 grpE; Heat shock protein GrpE K03687 GRPE; molecular chaperone GrpE
D PMM1437 groES; GroES protein (Chaperonin cpn10) K04078 groES; chaperonin GroES
D PMM0854 ftsH4; cell division protein FtsH4 K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D PMM0226 ftsH2; cell division protein FtsH2 K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D PMM0743 ftsH1; FtsH ATP-dependent protease homolog K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D PMM1264 ftsH3; cell division protein FtsH3 K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D PMM1456 atpI; ATP synthase A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D PMM1155 ppiA; Cyclophilin-type peptidyl-prolyl cis-trans isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D PMM0894 Cyclophilin-type peptidyl-prolyl cis-trans isomerase K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D PMM1061 trxA; Thioredoxin K03671 TXN; thioredoxin
D PMM0179 Glutaredoxin K03676 grxC; glutaredoxin 3
D PMM1111 Glutaredoxin-related protein K07390 grxD; monothiol glutaredoxin
C 04131 Membrane trafficking [BR:pmm04131]
D PMM0046 Nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D PMM0849 conserved hypothetical protein K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family
D PMM0912 pykF; Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D PMM0901 htpG; heat shock protein HtpG K04079 HSP90A; molecular chaperone HtpG
C 04121 Ubiquitin system [BR:pmm04121]
C 03051 Proteasome [BR:pmm03051]
D PMM0901 htpG; heat shock protein HtpG K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:pmm03032]
D PMM0200 rnhA; possible ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D PMM1321 Bacterial histone-like DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D PMM0565 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D PMM1674 dnaB; DnaB replicative helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D PMM0939 CHC2 zinc finger:Toprim domain K02316 dnaG; DNA primase [EC:2.7.7.101]
D PMM1623 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D PMM0945 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D PMM0001 dnaN; DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D PMM1647 conserved hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D PMM0129 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D PMM0621 dnaQ; possible DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PMM1658 dnaX; DNA polymerase, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D PMM1502 Ribonuclease HII and HIII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D PMM0659 NAD-dependent DNA ligase N-terminus K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D PMM0005 DNA gyrase/topoisomerase IV, subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D PMM1063 gyrA; DNA gyrase/topoisomerase IV, subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D PMM1634 gyrB; DNA gyrase, subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D PMM0436 topA; Prokaryotic DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:pmm03036]
D PMM1603 rnc; putative ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D PMM1321 Bacterial histone-like DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D PMM0896 dnaJ2; DnaJ2 protein K05516 cbpA; curved DNA-binding protein
D PMM0565 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D PMM0057 putative chromosome segregation protein, SMC ATPase superfamily K03529 smc; chromosome segregation protein
D PMM0151 conserved hypothetical protein K05896 scpA; segregation and condensation protein A
D PMM0909 conserved hypothetical protein K06024 scpB; segregation and condensation protein B
D PMM0518 ftsI; putative peptidoglycan synthetase (pbp transpeptidase domain) K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D PMM1308 conserved hypothetical protein K03589 ftsQ; cell division protein FtsQ
D PMM1458 ftsW; Cell division protein FtsW K03588 ftsW; cell division protein FtsW
D PMM1309 ftsZ; Cell division protein FtsZ:Tubulin/FtsZ family K03531 ftsZ; cell division protein FtsZ
D PMM0616 Cell wall hydrolase/autolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D PMM0322 minC; possible septum site-determining protein K03610 minC; septum site-determining protein MinC
D PMM0321 minD; putative septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D PMM0320 minE; possible septum site-determining protein MinE K03608 minE; cell division topological specificity factor
D PMM0395 conserved hypothetical protein K09772 sepF; cell division inhibitor SepF
D PMM1622 mreB; Rod shape determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D PMM1621 mreC; putative rod shape-determining protein K03570 mreC; rod shape-determining protein MreC
D PMM1580 rodA; Alternative locus ID: PMED4_17901 K05837 rodA; rod shape determining protein RodA
D PMM0051 conserved hypothetical protein K03496 parA; chromosome partitioning protein
D PMM1675 Glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D PMM1475 gidB; putative glucose inhibited division protein B K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D PMM1116 gidA; NAD binding site:Glucose inhibited division protein A family K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74]
D PMM1581 MRP protein homolog K03593 mrp; ATP-binding protein involved in chromosome partitioning
C 03400 DNA repair and recombination proteins [BR:pmm03400]
D PMM0285 phr; putative DNA photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D PMM1360 similar to DNA photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D PMM0234 possible Methylpurine-DNA glycosylase (MPG) K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
D PMM0802 putative endonuclease K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D PMM0425 conserved hypothetical protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
D PMM0675 Uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D PMM0328 FPG; Formamidopyrimidine-DNA glycolase (FAPY-DNA glycolase) K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D PMM0484 xthA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D PMM0659 NAD-dependent DNA ligase N-terminus K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D PMM1712 uvrA; Excinuclease ABC, A subunit, ATP/GTP-binding site motif A (P-loop):ABC transporter K03701 uvrA; excinuclease ABC subunit A
D PMM1649 uvrB; Excinuclease ABC subunit B (UvrB) K03702 uvrB; excinuclease ABC subunit B
D PMM0882 uvrC; Excinuclease ABC subunit C (UvrC) K03703 uvrC; excinuclease ABC subunit C
D PMM0304 uvrD; UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D PMM1485 rpoB; RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D PMM1483 rpoC2; RNA polymerase beta prime subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D PMM1484 rpoC1; RNA polymerase gamma subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D PMM1535 rpoA; Bacterial RNA polymerase, alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D PMM1431 rpoZ; putative DNA-directed RNA polymerase (omega chain) K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D PMM0839 Transcriptional-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D PMM1645 mutS; putative DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS
D PMM0217 mutS; putative DNA mismatch repair protein MutS family K07456 mutS2; DNA mismatch repair protein MutS2
D PMM0945 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D PMM0001 dnaN; DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D PMM1647 conserved hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D PMM0129 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D PMM0621 dnaQ; possible DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D PMM1658 dnaX; DNA polymerase, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D PMM1623 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D PMM1103 recB; possible UvrD/REP helicase subunit B K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D PMM1105 recC; possible exodeoxyribonuclease V subunit C 125 kD polypeptide K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D PMM1102 recD; possible exodeoxyribonuclease V 67 kD polypeptide K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D PMM1562 recA; RecA bacterial DNA recombination protein K03553 recA; recombination protein RecA
D PMM0942 ruvA; putative holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D PMM1615 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D PMM1054 ruvC; Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D PMM0497 priA; primosomal protein N' (replication factor Y) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D PMM0133 radA; putative DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D PMM1573 recF; putative DNA repair and genetic recombination protein RecF K03629 recF; DNA replication and repair protein RecF
D PMM0756 recG; ATP-dependent DNA helicase recG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D PMM0398 possible Recombination protein O (RecO) K03584 recO; DNA repair protein RecO (recombination protein O)
D PMM1097 recR; RecR protein K06187 recR; recombination protein RecR
D PMM1713 recN; DNA REPAIR PROTEIN RECN, ABC transporter K03631 recN; DNA repair protein RecN (Recombination protein N)
D PMM0005 DNA gyrase/topoisomerase IV, subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D PMM1063 gyrA; DNA gyrase/topoisomerase IV, subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D PMM1634 gyrB; DNA gyrase, subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D PMM0436 topA; Prokaryotic DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D PMM1321 Bacterial histone-like DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D PMM0937 umuC; putative UmuC protein K03502 umuC; DNA polymerase V
D PMM0936 putative SOS mutagenesis protein UmuD K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D PMM1262 lexA; SOS function regulatory protein, LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D PMM1564 conserved hypothetical protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D PMM0728 DEAD/DEAH box helicase:Helicase C-terminal domain K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
C 03029 Mitochondrial biogenesis [BR:pmm03029]
D PMM1494 infB; Translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D PMM1636 infC; Translation Initiation factor 3 K02520 infC; translation initiation factor IF-3
D PMM0754 tsf; putative Elongation factor Ts K02357 tsf; elongation factor Ts
D PMM1508 tufA; Elongation factor Tu K02358 tuf; elongation factor Tu
D PMM1509 fusA; Elongation factor G K02355 fusA; elongation factor G
D PMM1281 GTP-binding protein ERA homolog K03595 era; GTPase
D PMM1444 conserved hypothetical protein K03595 era; GTPase
D PMM1329 tyrS; Tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D PMM0889 leuS; Leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D PMM1688 aspS; Aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D PMM0187 argS; Arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D PMM0946 gatA; Glutamyl-tRNA(Gln) amidotransferase A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D PMM0048 gatB; Glutamyl-tRNA (Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D PMM0235 gatC; Glutamyl-tRNA(Gln) amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D PMM1623 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D PMM1338 chloroplast outer envelope membrane protein homolog K07277 SAM50; outer membrane protein insertion porin family
D PMM1704 dnaK2; Molecular chaperone DnaK2, heat shock protein hsp70-2 K04043 dnaK; molecular chaperone DnaK
D PMM0897 dnaK; Molecular chaperone DnaK, heat shock protein hsp70 K04043 dnaK; molecular chaperone DnaK
D PMM0016 grpE; Heat shock protein GrpE K03687 GRPE; molecular chaperone GrpE
D PMM0452 groEL2; GroEL2 protein (Chaperonin cpn60 2) K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D PMM1436 groEL; GroEL protein (Chaperonin cpn60) K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D PMM1437 groES; GroES protein (Chaperonin cpn10) K04078 groES; chaperonin GroES
D PMM0017 dnaJ; DnaJ protein K03686 dnaJ; molecular chaperone DnaJ
D PMM0122 possible heat shock protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D PMM0170 NifS-like aminotransferase class-V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D PMM0887 nifS; possible cysteine desulfurase (class-V aminotransferase family) K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D PMM1111 Glutaredoxin-related protein K07390 grxD; monothiol glutaredoxin
D PMM1581 MRP protein homolog K03593 mrp; ATP-binding protein involved in chromosome partitioning
D PMM0448 ctaB; putative protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D PMM0447 conserved hypothetical protein K02259 COX15; heme a synthase [EC:1.17.99.9]
D PMM1186 Putative inner membrane protein; similar to 60 kDa inner membrane protein family K03217 yidC; YidC/Oxa1 family membrane protein insertase
D PMM0482 phb; Band 7 protein K17081 PHB2; prohibitin 2
D PMM0901 htpG; heat shock protein HtpG K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:pmm02000]
D PMM0954 ABC transporter, multidrug efflux family K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D PMM0561 putative multidrug efflux ABC transporter K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D PMM1239 hetA; ABC transporter K24846 pglK; ATP-binding cassette, subfamily B, bacterial PglK [EC:7.5.2.-]
D PMM0827 ABC transporter, possibly multidrug efflux K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D PMM1099 ABC transporter, multidrug efflux family K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D PMM0065 ABC transporter, ATP binding protein K02471 bacA; vitamin B12/bleomycin/antimicrobial peptide transport system ATP-binding/permease protein
D PMM0370 putative cyanate ABC transporter, substrate binding protein K15576 nrtA; nitrate/nitrite transport system substrate-binding protein
D PMM0371 putative cyanate ABC transporter K15577 nrtB; nitrate/nitrite transport system permease protein
D PMM0372 putative cyanate ABC transporter K15578 nrtC; nitrate/nitrite transport system ATP-binding protein [EC:7.3.2.4]
D PMM1164 futA; putative iron ABC transporter, substrate binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D PMM0489 futB; putative iron ABC transporter K02011 afuB; iron(III) transport system permease protein
D PMM0803 futC; ABC transporter, ATP binding component, possibly iron transporter K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D PMM0289 possible ABC transporter K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D PMM1324 possible transporter, membrane component K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D PMM0290 possible ABC transporter, ATP binding component K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D PMM0710 ABC transporter, substrate binding protein, phosphate K02040 pstS; phosphate transport system substrate-binding protein
D PMM0723 pstC; putative phosphate ABC transporter K02037 pstC; phosphate transport system permease protein
D PMM0724 pstA; putative phosphate ABC transporter K02038 pstA; phosphate transport system permease protein
D PMM0725 putative phosphate ABC transporter, ATP binding subunit K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D PMM0673 Putative phosphonate binding protein for ABC transporter K02044 phnD; phosphonate transport system substrate-binding protein
D PMM0671 putative phosphonate ABC transporter K02042 phnE; phosphonate transport system permease protein
D PMM0672 Putative phosphonate ABC transporter K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D PMM0970 urtA; putative urea ABC transporter, substrate binding protein K11959 urtA; urea transport system substrate-binding protein
D PMM0971 urtB; putative urea ABC transporter K11960 urtB; urea transport system permease protein
D PMM0972 urtC; putative membrane protein of urea ABC transport system K11961 urtC; urea transport system permease protein
D PMM0973 urtD; putative ATP binding subunit of urea ABC transport system K11962 urtD; urea transport system ATP-binding protein
D PMM0974 urtE; Putative ATP-binding subunit of urea ABC transport system K11963 urtE; urea transport system ATP-binding protein
D PMM1049 ABC transporter, substrate binding protein, possibly oligopeptides K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D PMM1048 putative ABC transporter, oligopeptides K02033 ABC.PE.P; peptide/nickel transport system permease protein
D PMM0421 putative ABC transporter, oligopeptides K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D PMM0192 ABC transporter, ATP binding component, possibly for oligopeptides K02031 ddpD; peptide/nickel transport system ATP-binding protein
D PMM0807 possible ABC transporter component, ATP-binding domain K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D PMM0601 ABC transporter, substrate binding protein, possibly Mn K11601 mntC; manganese transport system substrate-binding protein
D PMM0603 ABC transporter component, possibly Mn transport K11602 mntB; manganese transport system permease protein
D PMM0602 ABC transporter, ATP binding domain, possibly Mn transporter K11603 mntA; manganese transport system ATP-binding protein [EC:7.2.2.5]
D PMM0914 conserved hypothetical protein K03523 bioY; biotin transport system substrate-specific component
D PMM0392 possible cobalt transport protein K16785 ecfT; energy-coupling factor transport system permease protein
D PMM0125 possible ABC transporter, ATP-binding component K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D PMM0666 possible ABC transporter, ATP-binding component K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D PMM1032 ABC transporter, substrate binding protein, possibly Mn. K02077 ABC.ZM.S; zinc/manganese transport system substrate-binding protein
D PMM1029 ABC transporter component, possibly Mn transport K02075 ABC.ZM.P; zinc/manganese transport system permease protein
D PMM1031 ABC transporter, ATP binding domain, possibly Mn transport K02074 ABC.ZM.A; zinc/manganese transport system ATP-binding protein
D PMM1386 possible permease K11720 lptG; lipopolysaccharide export system permease protein
D PMM0764 possible ABC transporter, ATP binding component K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D PMM0978 conserved membrane protein, multidrug efflux associated K25154 evrC; viologen exporter family transport system permease protein
D PMM0977 putative multidrug efflux ABC transporter K25155 evrB; viologen exporter family transport system permease protein
D PMM0976 putative multidrug efflux ABC transporter K25156 evrA; viologen exporter family transport system ATP-binding protein
D PMM0450 putative multidrug efflux ABC transporter K01992 ABC-2.P; ABC-2 type transport system permease protein
D PMM0449 putative multidrug efflux ABC transporter K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D PMM0913 possible ABC transporter K02004 ABC.CD.P; putative ABC transport system permease protein
D PMM0749 ABC-transporter, membrane spanning component K02004 ABC.CD.P; putative ABC transport system permease protein
D PMM0750 ABC transporter, ATP-binding component K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D PMM0434 possible ABC transporter, ATP binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D PMM0072 ABC transporter, ATP binding component K09013 sufC; Fe-S cluster assembly ATP-binding protein
D PMM0712 multidrug efflux transporter, MFS family K25223 arsJ; MFS transporter, APGE family, 1-arseno-3-phosphoglycerate exporter
D PMM0704 putative potassium channel, VIC family K10716 kch; voltage-gated potassium channel
D PMM0263 amt1; Ammonium transporter family K03320 amt; ammonium transporter, Amt family
D PMM0566 conserved hypothetical protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D PMM0110 putative glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D PMM0630 GSTTLp28; Glutathione S-transferase N terminus K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D PMM0635 small mechanosensitive ion channel, MscS family K16052 ynaI; MscS family membrane protein
D PMM1630 MgtE family, putative magnesium transport protein K06213 mgtE; magnesium transporter
D PMM1632 conserved hypothetical protein K06199 crcB; fluoride exporter
D PMM1631 conserved hypothetical protein K06199 crcB; fluoride exporter
D PMM1443 Domain of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family
D PMM1224 gumB; putative polysaccharide export protein K01991 wza; polysaccharide biosynthesis/export protein
D PMM1211 possible polysaccharide export or synthesis protein K01991 wza; polysaccharide biosynthesis/export protein
D PMM1338 chloroplast outer envelope membrane protein homolog K07277 SAM50; outer membrane protein insertion porin family
D PMM0568 putative CaCA family sodium/calcium exchanger K07301 yrbG; cation:H+ antiporter
D PMM0628 possible sodium:solute symporter, ESS family K03312 gltS; glutamate:Na+ symporter, ESS family
D PMM1600 putative Na+/H+ antiporter, CPA2 family K26730 napA; Na+:H+ antiporter
D PMM0084 possible sodium transporter, Trk family K03498 trkH; trk/ktr system potassium uptake protein
D PMM0085 putative potassium channel, VIC family K03499 trkA; trk/ktr system potassium uptake protein
D PMM1701 putative chloride channel K03281 clcA; chloride channel protein, CIC family
D PMM0711 putative chromate transporter, CHR family K07240 chrA; chromate transporter
D PMM0214 putative sulfate transporter K03321 TC.SULP; sulfate permease, SulP family
D PMM0644 putative sulfate transporter K03321 TC.SULP; sulfate permease, SulP family
D PMM0716 putative arsenite transporter, ACR3 family K03325 ACR3; arsenite transporter
D PMM0261 conserved hypothetical protein K03980 murJ; putative peptidoglycan lipid II flippase
D PMM1175 possible AEC transporter family, substrate unknown K24180 mleP; malate permease and related proteins
D PMM1458 ftsW; Cell division protein FtsW K03588 ftsW; cell division protein FtsW
D PMM0849 conserved hypothetical protein K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family
D PMM1173 conserved hypothetical protein K15383 K15383; MtN3 and saliva related transmembrane protein
D PMM1459 ccdA; putative c-type cytochrome biogenesis protein CcdA K06196 ccdA; cytochrome c-type biogenesis protein
D PMM1225 conserved hypothetical protein K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
C 02044 Secretion system [BR:pmm02044]
D PMM0910 conserved hypothetical membrane protein K02221 yggT; YggT family protein
D PMM0061 YGGT family, conserved hypothetical integral membrane protein K02221 yggT; YggT family protein
D PMM1639 secA; Preprotein translocase SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D PMM0929 secD; preprotein translocase subunit K03072 secD; preprotein translocase subunit SecD
D PMM0206 secE; putative preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D PMM0928 secF; preprotein translocase subunit K03074 secF; preprotein translocase subunit SecF
D PMM1435 conserved hypothetical protein K03075 secG; preprotein translocase subunit SecG
D PMM1540 secY; preprotein translocase SecY subunit K03076 secY; preprotein translocase subunit SecY
D PMM1286 ffh; signal recognition particle protein (SRP54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D PMM0010 ftsY; signal recognition particle docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D PMM1186 Putative inner membrane protein; similar to 60 kDa inner membrane protein family K03217 yidC; YidC/Oxa1 family membrane protein insertase
D PMM0374 mttA/Hcf106 family K03116 tatA; sec-independent protein translocase protein TatA
D PMM0343 mttA/Hcf106 family K03116 tatA; sec-independent protein translocase protein TatA
D PMM0464 protein secretion component, Tat family K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:pmm02042]
D PMM1443 Domain of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family
C 02022 Two-component system [BR:pmm02022]
D PMM0706 phoR; two-component sensor histidine kinase, phosphate sensing K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D PMM0705 phoB; two-component response regulator, phosphate K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D PMM1341 nblS; two-component sensor histidine kinase K07769 nblS; two-component system, OmpR family, sensor histidine kinase NblS [EC:2.7.13.3]
D PMM1077 two-component sensor histidine kinase K08479 sasA; two-component system, OmpR family, clock-associated histidine kinase SasA [EC:2.7.13.3]
D PMM0128 rpaA; two-component response regulator K10697 rpaA; two-component system, OmpR family, response regulator RpaA
D PMM0134 rpaB; two-component response regulator K11329 rpaB; two-component system, OmpR family, response regulator RpaB
D PMM1113 two-component response regulator K02483 K02483; two-component system, OmpR family, response regulator
C 02035 Bacterial motility proteins
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:pmm04812]
D PMM1622 mreB; Rod shape determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D PMM1309 ftsZ; Cell division protein FtsZ:Tubulin/FtsZ family K03531 ftsZ; cell division protein FtsZ
D PMM0322 minC; possible septum site-determining protein K03610 minC; septum site-determining protein MinC
D PMM0321 minD; putative septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D PMM0320 minE; possible septum site-determining protein MinE K03608 minE; cell division topological specificity factor
D PMM0051 conserved hypothetical protein K03496 parA; chromosome partitioning protein
C 04147 Exosome [BR:pmm04147]
D PMM0901 htpG; heat shock protein HtpG K04079 HSP90A; molecular chaperone HtpG
D PMM0208 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D PMM0195 pgk; Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D PMM0912 pykF; Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D PMM1155 ppiA; Cyclophilin-type peptidyl-prolyl cis-trans isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D PMM0856 tpx; thioredoxin peroxidase K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24]
D PMM0452 groEL2; GroEL2 protein (Chaperonin cpn60 2) K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D PMM1436 groEL; GroEL protein (Chaperonin cpn60) K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D PMM1704 dnaK2; Molecular chaperone DnaK2, heat shock protein hsp70-2 K04043 dnaK; molecular chaperone DnaK
D PMM0897 dnaK; Molecular chaperone DnaK, heat shock protein hsp70 K04043 dnaK; molecular chaperone DnaK
D PMM0890 pgi; Phosphoglucose isomerase (PGI) K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D PMM1062 guaB; putative IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D PMM1508 tufA; Elongation factor Tu K02358 tuf; elongation factor Tu
D PMM0067 HIT (Histidine triad) family protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D PMM0402 fadD; putative long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D PMM1167 Macrophage migration inhibitory factor family K07253 MIF; phenylpyruvate tautomerase [EC:5.3.2.1]
D PMM1625 ahcY; putative adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D PMM1539 adk; Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D PMM1122 apt; Phosphoribosyl transferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D PMM0012 argH; Fumarate lyase:Delta crystallin K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D PMM1707 argG; Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D PMM0584 glgB; 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D PMM0920 glnA; Glutamine synthetase, glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D PMM0215 Delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D PMM0491 4a-hydroxytetrahydrobiopterin dehydratase (PCD) K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D PMM1354 serA; putative D-3-phosphoglycerate dehydrogenase (PGDH) K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D PMM0266 purH; AICARFT/IMPCHase bienzyme:Methylglyoxal synthase-like domain K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D PMM1298 lpdA; putative dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D PMM1074 zwf; Glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D PMM0482 phb; Band 7 protein K17081 PHB2; prohibitin 2
D PMM0829 tpi; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
C 02048 Prokaryotic defense system [BR:pmm02048]
D PMM1014 conserved hypothetical protein K07448 mrr; restriction system protein
D PMM1309 ftsZ; Cell division protein FtsZ:Tubulin/FtsZ family K03531 ftsZ; cell division protein FtsZ
D PMM1622 mreB; Rod shape determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D PMM0473 gltX; Glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PMM0170 NifS-like aminotransferase class-V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D PMM0887 nifS; possible cysteine desulfurase (class-V aminotransferase family) K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules [BR:pmm04090]
C 01504 Antimicrobial resistance genes [BR:pmm01504]
D PMM0761 putative carboxypeptidase K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D PMM0757 D-ala-D-ala dipeptidase K08641 vanX; zinc D-Ala-D-Ala dipeptidase [EC:3.4.13.22]
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:pmm03100]
D RNA_22 tRNA-Ala2; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RNA_4 tRNA-Ala1; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RNA_36 tRNA-Arg4; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RNA_19 tRNA-Arg3; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RNA_15 tRNA-Arg2; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RNA_10 tRNA-Arg1; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RNA_1 tRNA-Asn1; tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D RNA_30 tRNA-Asp1; tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D RNA_16 tRNA-Cys1; tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D RNA_14 tRNA-Gln1; tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D RNA_24 tRNA-Glu1; tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D RNA_21 tRNA-Gly2; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RNA_18 tRNA-Gly1; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RNA_12 tRNA-His1; tRNA-His K14226 tRNA-His; tRNA His
D RNA_3 tRNA-Ile1; tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D RNA_11 tRNA-Leu3; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RNA_37 tRNA-Leu4; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RNA_5 tRNA-Leu2; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RNA_2 tRNA-Leu1; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RNA_8 tRNA-Lys1; tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D RNA_26 tRNA-Met1; tRNA-Met K14230 tRNA-Met; tRNA Met
D RNA_27 tRNA-Met2; tRNA-Met K14230 tRNA-Met; tRNA Met
D RNA_35 tRNA-Met3; tRNA-Met K14230 tRNA-Met; tRNA Met
D RNA_34 tRNA-Phe1; tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D RNA_9 tRNA-Pro2; tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D RNA_7 tRNA-Pro1; tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D RNA_25 tRNA-Ser3; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RNA_23 tRNA-Ser2; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RNA_20 tRNA-Ser1; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RNA_28 tRNA-Ser4; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RNA_6 tRNA-Thr1; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RNA_32 tRNA-Thr2; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RNA_33 tRNA-Thr3; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RNA_29 tRNA-Trp1; tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D RNA_31 tRNA-Tyr1; tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D RNA_13 tRNA-Val1; tRNA-Val K14237 tRNA-Val; tRNA Val
D RNA_17 tRNA-Val2; tRNA-Val K14237 tRNA-Val; tRNA Val
D RNA_39 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RNA_40 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RNA_41 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RNA_44 ffs; signal recognition particle RNA (4.5 S RNA) K01983 ffs; SRP RNA
D RNA_42 rnpB; bacterial ribonuclease P RNA component of ribozyme K01978 rnpB; M1 RNA
D RNA_43 tmRNA; tmRNA, 10Sa RNA, SsrA (presursor permuted) K15035 ssrA; transfer-messenger RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D PMM1230 dehydrogenase E1 component beta subunit K21417 acoB; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta [EC:1.1.1.-]
D PMM0533 conserved hypothetical protein K14330 K14330; fatty aldehyde-generating acyl-ACP reductase [EC:1.2.1.80]
D PMM0713 gap1; Putative glyceraldehyde 3-phosphate dehydrogenase K25224 gapdh; glyceraldehyde-3-phosphate dehydrogenase (arsenate-transferring) [EC:1.2.1.107]
D PMM0990 conserved hypothetical protein K18208 RNLS; renalase [EC:1.6.3.5]
D PMM1333 Peptide methionine sulfoxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D PMM0955 msrA; Peptide methionine sulfoxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D PMM0015 Domain of unknown function DUF25 K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D PMM0221 Glutathione S-transferase C terminus K07393 ECM4; glutathionyl-hydroquinone reductase [EC:1.8.5.7]
D PMM0336 conserved hypothetical K17893 AOX1; ubiquinol oxidase [EC:1.10.3.11]
D PMM0079 bcp; putative bacterioferritin comigratory (BCP) protein K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D PMM0903 Alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergens family protein K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D PMM0345 putative bacterioferritin comigratory protein K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D PMM1366 DUF209 K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D PMM0280 Retinal pigment epithelial membrane protein K00464 diox1; all-trans-8'-apo-beta-carotenal 15,15'-oxygenase [EC:1.13.11.75]
D PMM1672 des9; Fatty acid desaturase, type 1 K23054 desC; sn-1 stearoyl-lipid 9-desaturase [EC:1.14.19.28]
D PMM1294 putative nickel-containing superoxide dismutase precursor (NISOD) K00518 sodN; nickel superoxide dismutase [EC:1.15.1.1]
D PMM0804 ferritin K02217 ftnA; ferritin [EC:1.16.3.2]
D PMM1251 Carbamoyltransferase K00612 nodU; carbamoyltransferase [EC:2.1.3.-]
D PMM1246 Carbamoyltransferase K00612 nodU; carbamoyltransferase [EC:2.1.3.-]
D PMM1292 possible apolipoprotein n-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D PMM0994 GCN5-related N-acetyltransferase K03830 yafP; putative acetyltransferase [EC:2.3.1.-]
D PMM1278 putative circadian phase modifier CpmA homolog K06898 larB; pyridinium-3,5-biscarboxylic acid mononucleotide synthase [EC:2.5.1.143]
D PMM0460 yvoC; putative prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D PMM1698 conserved hypothetical protein K18678 VTE5; phytol kinase [EC:2.7.1.182]
D PMM1012 4-hydroxybenzoyl-CoA thioesterase family active site K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D PMM0639 stpA; putative glucosylglycerolphosphate phosphatase K05978 stpA; glucosylglycerol 3-phosphatase [EC:3.1.3.69]
D PMM0789 conserved hypothetical protein K07015 yqeG; putative phosphatase [EC:3.1.3.-]
D PMM1068 conserved hypothetical protein K07037 pgpH; cyclic-di-AMP phosphodiesterase PgpH [EC:3.1.4.-]
D PMM1486 possible deoxyribonuclease, TatD family K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D PMM1417 Staphylococcus nuclease (SNase) homologues K01174 nuc; micrococcal nuclease [EC:3.1.31.1]
D PMM0068 def; putative formylmethionine deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D PMM0615 Possible nitrilase K11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128]
D PMM0558 conserved hypothetical protein K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D PMM0532 conserved hypothetical protein K14331 K14331; fatty aldehyde decarbonylase [EC:4.1.99.5]
D PMM1290 conserved hypothetical protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D PMM1571 conserved hypothetical protein K06864 larE; pyridinium-3,5-biscarboxylic acid mononucleotide sulfurtransferase [EC:4.4.1.37]
D PMM0487 conserved hypothetical protein K09121 larC; pyridinium-3,5-bisthiocarboxylic acid mononucleotide nickel chelatase [EC:4.99.1.12]
D PMM0025 Cyclophilin-type peptidyl-prolyl cis-trans isomerase K01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8]
D PMM1604 conserved hypothetical protein K00345 ndhS; NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [EC:7.1.1.-]
D PMM0131 putative P-type ATPase transporter for copper K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9]
C 99981 Carbohydrate metabolism
D PMM0262 putative sugar fermentation stimulation protein K06206 sfsA; sugar fermentation stimulation protein A
C 99982 Energy metabolism
D PMM1477 conserved hypothetical K05337 fer; ferredoxin
D PMM0393 conserved hypothetical protein K14518 pipX; PII interaction protein X
D PMM1171 isiB; Flavodoxin K03839 fldA; flavodoxin I
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D PMM0415 putative L-cysteine/cystine lyase K11325 K11325; L-cysteine/cystine lyase
D PMM0394 conserved hypothetical protein K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
D PMM0488 conserved hypothetical protein K07027 K07027; glycosyltransferase 2 family protein
C 99987 Cofactor metabolism
D PMM0778 cobW; putative cobalamin synthesis protein K02234 cobW; cobalamin biosynthesis protein CobW
C 99988 Secondary metabolism
D PMM0041 possible reductase K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone)
C 99999 Others
D PMM1359 conserved hypothetical protein K15977 K15977; putative oxidoreductase
D PMM0265 conserved hypothetical protein K15977 K15977; putative oxidoreductase
D PMM0267 probable esterase K06999 K06999; phospholipase/carboxylesterase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
C 99974 Translation
D PMM0730 conserved hypothetical protein K07577 K07577; putative mRNA 3-end processing factor
C 99975 Protein processing
D PMM1499 conserved hypothetical protein K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D PMM0686 conserved hypothetical protein K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D PMM1655 FKBP-type peptidyl-prolyl cis-trans isomerase (PPIase) K03545 tig; trigger factor
D PMM0967 ureE; urease accessory protein UreE K03187 ureE; urease accessory protein
D PMM0968 ureF; urease accessory protein UreF K03188 ureF; urease accessory protein
D PMM0969 ureG; urease accessory protein UreG K03189 ureG; urease accessory protein
D PMM0966 ureD; urease accessory protein UreD K03190 ureD; urease accessory protein
D PMM1123 hupE; putative hydrogenase accessory protein K03192 ureJ; urease accessory protein
D PMM1616 smpB; tmRNA binding protein SmpB K03664 smpB; SsrA-binding protein
D PMM1025 putative stress-induced protein OsmC K07397 yhfA; putative redox protein
D PMM1460 ycf44; putative c-type cytochrome biogenesis protein Ccs1 K07399 resB; cytochrome c biogenesis protein
C 99976 Replication and repair
D PMM0077 yrvN; putative ATPase, AAA family K07478 ycaJ; putative ATPase
C 99979 Viral proteins
C 99998 Others
D PMM0020 conserved hypothetical protein K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D PMM1323 putative GPH family sugar transporter K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family
C 99978 Cell growth
C 99993 Cell motility
C 99995 Signaling proteins
D PMM0762 typA__bipA; tyrosine binding protein K06207 typA; GTP-binding protein
D PMM1284 phoH; PhoH-like phosphate starvation-inducible protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D PMM1343 kaiB; possible circadian oscillation regulator KaiB K08481 kaiB; circadian clock protein KaiB
D PMM1342 kaiC; possible circadian clock protein KaiC K08482 kaiC; circadian clock protein KaiC
D PMM0481 conserved hypothetical protein K09767 yajQ; cyclic-di-GMP-binding protein
C 99992 Structural proteins
D PMM1139 possible membrane fusion protein K02005 ABC.CD.TX; HlyD family secretion protein
D PMM0748 possible ABC transporter component K02005 ABC.CD.TX; HlyD family secretion protein
C 99994 Others
D PMM0504 CutA1 divalent ion tolerance protein K03926 cutA; periplasmic divalent cation tolerance protein
B
B 09194 Poorly characterized
C 99996 General function prediction only
D PMM0073 ABC transporter, membrane component K09014 sufB; Fe-S cluster assembly protein SufB
D PMM0071 ABC transporter, membrane component K09015 sufD; Fe-S cluster assembly protein SufD
D PMM0095 similar to serum resistance locus BrkB K07058 K07058; membrane protein
D PMM1052 conserved hypothetical protein K02426 sufE; cysteine desulfuration protein SufE
D PMM1094 conserved hypothetical protein K07146 K07146; UPF0176 protein
D PMM1526 hisB; putative imidazoleglycerol-phosphate dehydratase K11777 K11777; HAD superfamily phosphatase
D PMM0252 psbN; Photosystem II reaction centre N protein (psbN) K02715 psbN; PsbN protein
D PMM1368 conserved hypothetical protein K08983 K08983; putative membrane protein
C 99997 Function unknown
D PMM0479 conserved hypothetical protein K06873 K06873; uncharacterized protein
D PMM0916 conserved hypothetical protein K06883 K06883; uncharacterized protein
D PMM0323 conserved hypothetical protein K06885 K06885; uncharacterized protein
D PMM1283 conserved hypothetical protein K06890 K06890; uncharacterized protein
D PMM0850 conserved hypothetical protein K06940 K06940; uncharacterized protein
D PMM0727 Serine/threonine specific protein phosphatase K06953 K06953; uncharacterized protein
D PMM0585 conserved hypothetical protein K06978 K06978; uncharacterized protein
D PMM1372 conserved hypothetical protein K06995 K06995; uncharacterized protein
D PMM1144 conserved hypothetical protein K07019 K07019; uncharacterized protein
D PMM0120 putative cell division inhibitor K07071 K07071; uncharacterized protein
D PMM1476 Aldo/keto reductase family K07079 K07079; uncharacterized protein
D PMM0441 Aldo/keto reductase family K07079 K07079; uncharacterized protein
D PMM0213 sbtA; putative sodium-dependent bicarbonate transporter K07086 K07086; uncharacterized protein
D PMM0981 conserved hypothetical protein K07090 K07090; uncharacterized protein
D PMM0033 conserved hypothetical protein K07120 K07120; uncharacterized protein
D PMM0411 conserved hypothetical protein K08998 K08998; uncharacterized protein
D PMM0360 conserved hypothetical protein K09705 K09705; uncharacterized protein
D PMM0763 conserved hypothetical protein K09763 K09763; uncharacterized protein
D PMM1071 conserved hypothetical protein K09775 K09775; uncharacterized protein
D PMM0574 conserved hypothetical protein K09780 K09780; uncharacterized protein
D PMM0383 probable periplasmic protein K09797 K09797; uncharacterized protein
D PMM0104 conserved hypothetical protein K09919 K09919; uncharacterized protein
D PMM0190 conserved hypothetical protein K09928 K09928; uncharacterized protein
D PMM0564 conserved hypothetical protein K09931 K09931; uncharacterized protein
D PMM0075 conserved hypothetical protein K09942 K09942; uncharacterized protein
D PMM0380 conserved hypothetical protein K09958 K09958; uncharacterized protein
D PMM0875 conserved hypothetical protein K09966 K09966; uncharacterized protein
D PMM1493 conserved hypothetical protein K07742 ylxR; uncharacterized protein
!
#
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: May 11, 2024