+F Repair protein KO #

  DNA Repair and Recombination Proteins - Proteus mirabilis HI4320

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D PMI0417 ogt; putative methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D PMI3229 phrB; deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E PMI1899 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E PMI0326 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E PMI1310 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D PMI2055 mutT; mutator MutT protein (dGTP pyrophosphohydrolase) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PMI2395 NUDIX-family hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PMI0837 MutT/NUDIX family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PMI3154 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D PMI0417 ogt; putative methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D PMI1240 ada; regulatory protein of adaptative response [contains: methylated-DNA--protein-cysteine methyltransferase] K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D PMI3229 phrB; deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E PMI1899 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E PMI1239 probable base excision DNA repair protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E PMI0326 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E PMI2853 tag; DNA-3-methyladenine DNA glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E PMI3164 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E PMI1310 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E PMI1495 xthA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E PMI0838 nfo; endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E PMI2773 nfi; endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E PMI2010 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E PMI1823 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E PMI2826 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E PMI2746 uvrA; UvrABC excision repair system proteinA (excinuclease ABC subunit A) K03701 uvrA; excinuclease ABC subunit A E PMI0607 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E PMI1521 uvrC; UvrABC system protein C (excinuclease ABC subunit C) K03703 uvrC; excinuclease ABC subunit C E PMI3340 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E PMI2826 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E PMI1823 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F PMI2785 rpoB; DNA-directed RNA polymerase, beta-subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F PMI2784 rpoC; DNA-directed RNA polymerase beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F PMI3280 rpoA; DNA-directed RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F PMI2863 rpoZ; DNA-directed RNA polymerase omega chain K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F PMI0877 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E PMI2235 mutS; DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E PMI3363 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor E PMI2089 mutH; DNA mismatch repair protein K03573 mutH; DNA mismatch repair protein MutH D DNA exonucleases E PMI0848 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E PMI1547 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E PMI0096 xseB; exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E PMI2270 dnaE; DNA polymerase III, alpha chain K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E PMI3133 dnaN; DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E PMI3463 holC; DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E PMI0431 holA; DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E PMI0867 holB; DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E PMI0228 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E PMI2483 putative plasmid-related exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E PMI0139 dnaX; DNA polymerase III Tau subunit (contains DNA polymerase III Gamma subunit) K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] E PMI2495 holD; DNA polymerase III, psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7] E PMI1602 holE2; DNA polymerase III, theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] E PMI0538 holE1; putative DNA polymerase III, theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7] D DNA ligase E PMI1823 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E PMI3340 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E PMI2449 putative plasmid-related single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E PMI2747 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein E PMI0899 single-strand binding protein K03111 ssb; single-strand DNA-binding protein E PMI1999 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E PMI3029 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E PMI2309 recB; exodeoxyribonuclease V beta chain K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E PMI2311 recC; exodeoxyribonuclease V gamma chain K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E PMI2308 recD; exodeoxyribonuclease V alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E PMI0375 recA; protein RecA (recombinase A) K03553 recA; recombination protein RecA E PMI1115 ruvA; Holliday junction ATP-dependent DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA E PMI1116 ruvB; Holliday junction ATP-dependent DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E PMI1114 ruvC; Holliday junction nuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E PMI3219 priA; primosomal protein n' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E PMI3375 priB; primosomal replication protein N K02686 priB; primosomal replication protein N E PMI0137 priC; primosomal replication protein N'' K04067 priC; primosomal replication protein N'' E PMI0848 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E PMI0049 sbcC; exonuclease K03546 sbcC; DNA repair protein SbcC/Rad50 E PMI0050 sbcD; exonuclease subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E PMI0375 recA; protein RecA (recombinase A) K03553 recA; recombination protein RecA E PMI2506 radA; DNA repair protein K04485 radA; DNA repair protein RadA/Sms E PMI3134 recF; dna replication and repair protein K03629 recF; DNA replication and repair protein RecF E PMI2866 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E PMI2010 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E PMI1886 recO; DNA repair protein K03584 recO; DNA repair protein RecO (recombination protein O) E PMI0141 recR; recombination protein K06187 recR; recombination protein RecR E PMI1902 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E PMI0043 rdgC; recombination associated protein RdgC K03554 rdgC; recombination associated protein RdgC E PMI1115 ruvA; Holliday junction ATP-dependent DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA E PMI1116 ruvB; Holliday junction ATP-dependent DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E PMI1114 ruvC; Holliday junction nuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E PMI0827 putative helicase K19789 radD; DNA repair protein RadD D Archaeal homologous recombinant proteins E PMI0049 sbcC; exonuclease K03546 sbcC; DNA repair protein SbcC/Rad50 E PMI0050 sbcD; exonuclease subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F PMI1732 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F PMI3135 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F PMI1334 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F PMI2771 hupA; DNA-binding protein HU-alpha (HU-2) K05787 hupA; DNA-binding protein HU-alpha F PMI0118 hupB; DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F PMI0467 recT; phage DNA recombinase K07455 recT; recombination protein RecT F PMI2010 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F PMI1886 recO; DNA repair protein K03584 recO; DNA repair protein RecO (recombination protein O) F PMI0141 recR; recombination protein K06187 recR; recombination protein RecR F PMI1823 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F PMI3622 fis; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F PMI1040 ihfA; integration host factor alpha-subunit K04764 ihfA; integration host factor subunit alpha F PMI0716 ihfB; integration host factor beta-subunit K05788 ihfB; integration host factor subunit beta E Supressor F PMI0848 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F PMI3345 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F PMI2746 uvrA; UvrABC excision repair system proteinA (excinuclease ABC subunit A) K03701 uvrA; excinuclease ABC subunit A F PMI0607 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B F PMI1488 hns; DNA-binding protein (histone-like structuring protein) K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D PMI0362 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D PMI2485 umuC; DNA repair protein K03502 umuC; DNA polymerase V D PMI2484 umuD; DNA repair protein K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D PMI0375 recA; protein RecA (recombinase A) K03553 recA; recombination protein RecA D PMI2749 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D PMI1902 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D PMI2327 polB; DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7] D PMI2449 putative plasmid-related single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D PMI2747 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein D PMI0899 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D PMI1958 putative DNA-damage-inducible protein K12149 dinI; DNA-damage-inducible protein I D PMI2663 putative regulatory protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D PMI3310 rep; ATP-dependent DNA helicase K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D PMI0789 helD; putative helicase IV K03658 helD; DNA helicase IV [EC:5.6.2.4] D PMI0630 dinG; putative ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D PMI1163 putative ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D PMI2055 mutT; mutator MutT protein (dGTP pyrophosphohydrolase) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PMI2395 NUDIX-family hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PMI0837 MutT/NUDIX family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D PMI3154 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D PMI0414 nrdE; ribonucleoside-diphosphate reductase alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D PMI1734 nrdA; ribonucleoside-diphosphate reductase 1 alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D PMI0413 nrdF; ribonucleoside-diphosphate reductase beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D PMI1735 nrdB; ribonucleoside-diphosphate reductase 1, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024