+D
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Transfer RNA Biogenesis - Pseudomonas syringae pv. tomato DC3000
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AEukaryotic type
B 5'processing factors
C Ribonucrease P
B 3'processing and CCA adding factors
C 3'processing factors
C CCA adding factors
D PSPTO_0544 cca; tRNA nucleotidyltransferase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
B tRNA spricing factors
C tRNA splicing endonuclease complex
C tRNA splicing ligase complex
C Other tRNA splicing factors
B tRNA transport factors
C tRNA export factors
C tRNA import factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D PSPTO_2166 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PSPTO_3988 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D PSPTO_0806 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D PSPTO_4812 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D PSPTO_4147 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D PSPTO_2964 conserved hypothetical protein K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D PSPTO_3743 glnS; glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D PSPTO_5138 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D PSPTO_1501 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D PSPTO_3981 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
C Other AARSs
D PSPTO_1842 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PSPTO_2378 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D PSPTO_3345 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D PSPTO_3742 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D PSPTO_1268 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D PSPTO_1435 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D PSPTO_2382 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D PSPTO_2383 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D PSPTO_0609 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D PSPTO_4429 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C Trans-editing factors
D PSPTO_5163 dtd; D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
C AARS associated factors
D PSPTO_0600 HIT family protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
B tRNA modification factors
C Deaminases
C Dihydorouridine synthases
C Methylthiotransferase
C Methyltransferases
D PSPTO_0435 methyltransferase, putative K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D PSPTO_4023 conserved hypothetical protein K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-]
C Psudouridine synthases
D PSPTO_3817 truA; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D PSPTO_4488 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D PSPTO_1561 conserved protein of unknown function K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
C Thiolation factors
D PSPTO_1423 iscS-2; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D PSPTO_0272 iscS-1; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D PSPTO_3438 iscS-3; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C KEOPS/EKC complex
C Elongator complex
C Elongator related proteins
C Other tRNA modification factors
D PSPTO_0174 SUA5/yciO/yrdC family domain protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D PSPTO_4943 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D PSPTO_5611 trmE; tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D PSPTO_5610 gidA; glucose-inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D PSPTO_0793 selD; selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
B tRNA degradation factors
C TRAMP complex
C Rapid tRNA decay (RTD) pathway factors
D PSPTO_5401 cysQ; 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
C Other tRNA degradation factors
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AProkaryotic type
B 5'processing factors
C Ribonucrease P
D PSPTO_5614 rnpA; ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D PSPTO_5661 RNaseP_bact_a K01978 rnpB; M1 RNA
B 3'processing and CCA adding factors
C 3'processing factors
D PSPTO_4158 rnt; ribonuclease T K03683 rnt; ribonuclease T [EC:3.1.13.-]
D PSPTO_0077 rph; ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D PSPTO_3922 rnd; ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5]
C CCA adding factors
D PSPTO_0544 cca; tRNA nucleotidyltransferase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
B tRNA spricing factors
C tRNA splicing endonucleases
C tRNA splicing ligases
C Other tRNA splicing factors
D PSPTO_4788 kptA; RNA 2'-phosphotransferase K07559 kptA; putative RNA 2'-phosphotransferase [EC:2.7.1.-]
B tRNA transport factors
C tRNA export factors
D PSPTO_4602 ABC transporter, ATP-binding protein K06020 ettA; energy-dependent translational throttle protein EttA
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D PSPTO_4812 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D PSPTO_3988 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
C Other AARSs
D PSPTO_0609 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D PSPTO_4429 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D PSPTO_2378 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D PSPTO_0806 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D PSPTO_1501 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D PSPTO_1842 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PSPTO_1268 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D PSPTO_4147 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D PSPTO_2964 conserved hypothetical protein K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D PSPTO_3345 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D PSPTO_3981 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D PSPTO_0184 glyQ; glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D PSPTO_0185 glyS; glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D PSPTO_3742 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D PSPTO_2166 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PSPTO_3743 glnS; glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D PSPTO_5138 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D PSPTO_2382 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D PSPTO_2383 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D PSPTO_1435 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D PSPTO_0967 glutamyl-tRNA synthetase-related protein K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
C Trans-editing factors
D PSPTO_5163 dtd; D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D PSPTO_4166 ybaK/ebsC protein K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
B tRNA modification factors
C Deaminases
C Dihydorouridine synthases
D PSPTO_2126 TIM-barrel protein, yjbN family K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
D PSPTO_4864 TIM-barrel protein, putative, NifR3 family K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D PSPTO_2169 dihydrouridine synthase family protein K05541 dusC; tRNA-dihydrouridine synthase C [EC:1.-.-.-]
C Methylthiotransferases
D PSPTO_4804 miaB; tRNA-i(6)A37 modification enzyme MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
C Methyltransferases
D PSPTO_4212 methyltransferase, putative K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
D PSPTO_4213 methyltransferase, putative K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-]
D PSPTO_0740 smtA; smtA protein K06219 smtA; tRNA 5-carboxymethoxyuridine methyltransferase [EC:2.1.1.-]
D PSPTO_4654 trmA; tRNA (uracil-5-)-methyltransferase K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35]
D PSPTO_0435 methyltransferase, putative K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D PSPTO_1475 trmD; tRNA (guanine-N1)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D PSPTO_5611 trmE; tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D PSPTO_1420 RNA methyltransferase, TrmH family, group 1 K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200]
D PSPTO_4779 conserved hypothetical protein K06967 trmK; tRNA (adenine22-N1)-methyltransferase [EC:2.1.1.217]
D PSPTO_5323 RNA methyltransferase, TrmH family, group 2 K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D PSPTO_4023 conserved hypothetical protein K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-]
C Psudouridine synthases
D PSPTO_3817 truA; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D PSPTO_4488 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D PSPTO_1561 conserved protein of unknown function K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D PSPTO_3875 rluA; ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D PSPTO_2349 RNA pseudouridine synthase family protein K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
C Thiolation factors
D PSPTO_3358 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D PSPTO_1684 conserved protein of unknown function K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D PSPTO_2018 SirA protein, putative K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D PSPTO_3957 conserved protein of unknown function K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D PSPTO_3340 DsrH family protein K07237 tusB; tRNA 2-thiouridine synthesizing protein B
D PSPTO_3339 DsrF family protein K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D PSPTO_3338 DsrE family protein K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D PSPTO_3341 conserved hypothetical protein K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D PSPTO_1425 iscA; iron-binding protein IscA K13628 iscA; iron-sulfur cluster assembly protein
D PSPTO_1423 iscS-2; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D PSPTO_0272 iscS-1; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D PSPTO_3438 iscS-3; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D PSPTO_4228 conserved protein of unknown function K06980 ygfZ; tRNA-modifying protein YgfZ
C KEOPS/EKC complex
C Other tRNA modification factors
D PSPTO_5610 gidA; glucose-inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D PSPTO_4943 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D PSPTO_3750 conserved protein of unknown function K06169 miaE; tRNA 2-(methylsulfanyl)-N6-isopentenyladenosine37 hydroxylase [EC:1.14.99.69]
D PSPTO_1639 oxidoreductase, FAD-binding protein K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
D PSPTO_1412 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D PSPTO_3968 exsB; exsB protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D PSPTO_3430 6-pyruvoyl tetrahydrobiopterin synthase, putative K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D PSPTO_3969 radical SAM domain protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D PSPTO_2112 GTP cyclohydrolase I, putative K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D PSPTO_4948 iron-sulfur cluster-binding protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D PSPTO_0793 selD; selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D PSPTO_0794 conserved hypothetical protein K06917 selU; tRNA 2-selenouridine synthase [EC:2.9.1.3]
D PSPTO_1413 tgt; queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D PSPTO_0360 thiI; thiamin biosynthesis protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D PSPTO_1551 cell cycle protein mesJ, putative K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D PSPTO_1510 conserved protein of unknown function K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D PSPTO_0174 SUA5/yciO/yrdC family domain protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D PSPTO_0540 gcp; O-sialoglycoprotein endopeptidase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D PSPTO_4946 conserved protein of unknown function K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D PSPTO_1525 ThiF family protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
B tRNA degradation factors
C PSPTO_4935 vacB; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
C PSPTO_4486 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C PSPTO_1045 virulence-associated protein, putative K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: February 29, 2024