+F Repair protein KO #

  DNA Repair and Recombination Proteins - Rhizobium etli CFN 42

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D RHE_CH00287 probable methylated-DNA-[protein]-cysteine S-methyltransferase protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E RHE_CH03242 ung; uracil-DNA glycosylase protein K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E RHE_CH03355 probable 3-methyladenine DNA glycosylase protein K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E RHE_CH00997 mutY; A/G-specific adenine glycosylase protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E RHE_CH03671 nth; endonuclease III protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D RHE_CH03766 mutT; NTP pyrophosphohydrolase protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D RHE_CH00330 dut; deoxyuridine 5`triphosphate nucleotidohydrolase protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D RHE_CH00287 probable methylated-DNA-[protein]-cysteine S-methyltransferase protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D RHE_CH03669 probable 6-O-methylguanine-DNA methyltransferase protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D RHE_CH00423 ada; methylated-DNA-[protein]-cysteine S-methyltransferase protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D RHE_CH00039 alkB; alkylated DNA repair protein K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E RHE_CH03242 ung; uracil-DNA glycosylase protein K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E RHE_CH02967 putative uracil DNA glycosylase protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E RHE_CH01302 probable DNA polymerase bacteriophage-type (uracil-DNA glycosylase) protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E RHE_PE00232 probable DNA-directed DNA polymerase protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E RHE_CH03785 alkA; DNA-3-methyladenine glycosidase II protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E RHE_CH03355 probable 3-methyladenine DNA glycosylase protein K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E RHE_CH00997 mutY; A/G-specific adenine glycosylase protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E RHE_CH00815 tag; DNA-3-methyladenine glycosylase I protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E RHE_CH00355 fpg; formamidopyrimidine-DNA glycosylase protein K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E RHE_CH03671 nth; endonuclease III protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E RHE_CH01731 xthA1; exodeoxyribonuclease III protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E RHE_CH01815 xthA2; exodeoxyribonuclease III protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E RHE_CH00732 probable exodeoxyribonuclease III protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E RHE_CH03970 xthA3; exodeoxyribonuclease III protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E RHE_CH01879 recJ; single-stranded-DNA-specific exonuclease protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E RHE_CH02835 ligA; DNA ligase (NAD+) protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E RHE_CH00151 polA; DNA-directed DNA polymerase, DNA poyimerase I protein K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E RHE_CH02107 uvrA; excinuclease ABC subunit A protein K03701 uvrA; excinuclease ABC subunit A E RHE_CH02563 uvrB; excinuclease ABC subunit B protein K03702 uvrB; excinuclease ABC subunit B E RHE_CH01479 uvrC; excinuclease ABC subunit C protein K03703 uvrC; excinuclease ABC subunit C E RHE_CH02819 uvrD2; DNA helicase II protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E RHE_CH00573 uvrD1; ATP-dependent DNA helicase protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E RHE_CH00151 polA; DNA-directed DNA polymerase, DNA poyimerase I protein K02335 polA; DNA polymerase I [EC:2.7.7.7] E RHE_CH02835 ligA; DNA ligase (NAD+) protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F RHE_CH01667 rpoB; DNA-directed RNA polymerase beta chain protein K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F RHE_CH01668 rpoC; DNA-directed RNA polymerase beta` chain protein K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F RHE_CH01699 rpoA; DNA-directed RNA polymerase alpha chain protein K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F RHE_CH01384 rpoZ; DNA-directed RNA polymerase omega chain protein K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F RHE_CH02095 mfd; transcription-repair coupling factor (TRCF) protein K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E RHE_CH00388 mutS; DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E RHE_CH00848 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E RHE_CH00276 xseA; exodeoxyribonuclease VII large subunit protein K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E RHE_CH00916 probable exodeoxyribonuclease VII small subunit protein K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E RHE_CH04083 dnaEch2; DNA polymerase III alpha subunit protein K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E RHE_CH01627 dnaEch1; DNA polymerase III alpha subunit protein K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E RHE_CH00318 dnaN; DNA polymerase III, beta chain protein K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E RHE_CH01457 putative DNA polymerase III, chi subunit protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E RHE_CH04118 putative DNA polymerase III, delta subunit protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E RHE_CH02159 holB; DNA polymerase III delta prime subunit protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E RHE_CH02833 probable DNA polymerase III, epsilon subunit protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E RHE_CH00005 dnaQ; DNA polymerase III, epsilon chain protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E RHE_PE00402 probable polymerase epsilon subunit protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E RHE_CH00126 dnaX; DNA polymerase III, tau subunit protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E RHE_CH02835 ligA; DNA ligase (NAD+) protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E RHE_CH02819 uvrD2; DNA helicase II protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E RHE_CH00573 uvrD1; ATP-dependent DNA helicase protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E RHE_CH02108 ssb; single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein E RHE_PF00110 probable DNA mismatch endonuclease protein K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E RHE_CH02323 recA; recombinase A protein K03553 recA; recombination protein RecA E RHE_CH03481 ruvA; holliday junction DNA helicase protein K03550 ruvA; holliday junction DNA helicase RuvA E RHE_CH03482 ruvB; holliday junction DNA helicase protein K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E RHE_CH03478 ruvC; crossover junction endoribonuclease protein K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E RHE_CH03875 priA; primosomal protein N` (replication factor Y) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E RHE_CH02323 recA; recombinase A protein K03553 recA; recombination protein RecA E RHE_CH01430 radA; DNA repair protein K04485 radA; DNA repair protein RadA/Sms E RHE_CH00141 recF; DNA replication and repair protein K03629 recF; DNA replication and repair protein RecF E RHE_CH02093 recG; ATP-dependent DNA helicase protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E RHE_CH01879 recJ; single-stranded-DNA-specific exonuclease protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E RHE_CH01394 recO; DNA repair protein K03584 recO; DNA repair protein RecO (recombination protein O) E RHE_CH00123 recR; DNA recombination protein K06187 recR; recombination protein RecR E RHE_CH02837 recN; DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) E RHE_CH03481 ruvA; holliday junction DNA helicase protein K03550 ruvA; holliday junction DNA helicase RuvA E RHE_CH03482 ruvB; holliday junction DNA helicase protein K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E RHE_CH03478 ruvC; crossover junction endoribonuclease protein K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E RHE_CH00026 probable nuclease/helicase protein, ATP dependent K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E RHE_CH00027 hypothetical conserved protein K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E RHE_CH01181 putative ATP-binding protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E RHE_PE00250 hypothetical conserved protein K10979 ku; DNA end-binding protein Ku E RHE_PE00249 hypothetical conserved protein K10979 ku; DNA end-binding protein Ku E RHE_CH00616 putative DNA helicase protein K10979 ku; DNA end-binding protein Ku E RHE_CH00618 putative DNA helicase protein K10979 ku; DNA end-binding protein Ku E RHE_PE00251 putative DNA ligase (ATP) protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E RHE_CH00617 putative DNA ligase protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E RHE_PE00252 putative ATP-dependent DNA ligase protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F RHE_CH02110 gyrA; DNA gyrase subunit A protein K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F RHE_CH00012 gyrB; DNA gyrase subunit B protein K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F RHE_CH01638 topA; DNA topoisomerase I protein K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F RHE_PE00209 probable DNA topoisomerase I protein K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F RHE_CH01590 hrm; bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F RHE_CH01879 recJ; single-stranded-DNA-specific exonuclease protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F RHE_CH01394 recO; DNA repair protein K03584 recO; DNA repair protein RecO (recombination protein O) F RHE_CH00123 recR; DNA recombination protein K06187 recR; recombination protein RecR F RHE_CH02835 ligA; DNA ligase (NAD+) protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F RHE_CH01533 himA; integration host factor alpha-subunit protein K04764 ihfA; integration host factor subunit alpha F RHE_CH00399 ihfB; integration host factor beta-subunit protein K05788 ihfB; integration host factor subunit beta E Supressor F RHE_CH02953 recQ; ATP-dependent DNA helicase protein K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F RHE_CH02107 uvrA; excinuclease ABC subunit A protein K03701 uvrA; excinuclease ABC subunit A F RHE_CH02563 uvrB; excinuclease ABC subunit B protein K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D RHE_CH01629 dinP; DNA damage inducible P protein K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D RHE_PF00149 dinB; DNA-directed DNA polymerase protein K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D RHE_CH02323 recA; recombinase A protein K03553 recA; recombination protein RecA D RHE_CH01928 lexA; transcriptional regulator repressor LexA protein K01356 lexA; repressor LexA [EC:3.4.21.88] D RHE_CH02837 recN; DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) D RHE_PF00150 hypothetical conserved protein K14160 imuA; protein ImuA D RHE_CH04085 hypothetical conserved protein K14160 imuA; protein ImuA D RHE_CH04084 putative nucleotidyltransferase protein K14161 imuB; protein ImuB D RHE_PF00151 putative nucleotidyltransferase protein K14161 imuB; protein ImuB D RHE_PF00152 dnaEf; DNA polymerase III alpha subunit protein K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D RHE_CH02108 ssb; single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein D RHE_CH00254 recX; DNA repair regulator protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D RHE_CH00549 lhr; ATP-dependent RNA/DNA helicase protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D RHE_CH03766 mutT; NTP pyrophosphohydrolase protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D RHE_CH00330 dut; deoxyuridine 5`triphosphate nucleotidohydrolase protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D RHE_CH01753 nrd; ribonucleotide-diphosphate reductase protein K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D RHE_CH03716 nrdE; ribonucleotide-diphosphate reductase, alpha subunit protein K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D RHE_CH03715 nrdF; ribonucleoside-diphosphate reductase, beta subunit protein K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024