+F Repair protein KO
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DNA Repair and Recombination Proteins - Rhizobium etli CFN 42
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D RHE_CH00287 probable methylated-DNA-[protein]-cysteine S-methyltransferase protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E RHE_CH03242 ung; uracil-DNA glycosylase protein K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E RHE_CH03355 probable 3-methyladenine DNA glycosylase protein K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E RHE_CH00997 mutY; A/G-specific adenine glycosylase protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E RHE_CH03671 nth; endonuclease III protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D RHE_CH03766 mutT; NTP pyrophosphohydrolase protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D RHE_CH00330 dut; deoxyuridine 5`triphosphate nucleotidohydrolase protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D RHE_CH00287 probable methylated-DNA-[protein]-cysteine S-methyltransferase protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D RHE_CH03669 probable 6-O-methylguanine-DNA methyltransferase protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D RHE_CH00423 ada; methylated-DNA-[protein]-cysteine S-methyltransferase protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D RHE_CH00039 alkB; alkylated DNA repair protein K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
C BER (base exicision repair)
D DNA glycosylases
E RHE_CH03242 ung; uracil-DNA glycosylase protein K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E RHE_CH02967 putative uracil DNA glycosylase protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E RHE_CH01302 probable DNA polymerase bacteriophage-type (uracil-DNA glycosylase) protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E RHE_PE00232 probable DNA-directed DNA polymerase protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E RHE_CH03785 alkA; DNA-3-methyladenine glycosidase II protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E RHE_CH03355 probable 3-methyladenine DNA glycosylase protein K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E RHE_CH00997 mutY; A/G-specific adenine glycosylase protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E RHE_CH00815 tag; DNA-3-methyladenine glycosylase I protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E RHE_CH00355 fpg; formamidopyrimidine-DNA glycosylase protein K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E RHE_CH03671 nth; endonuclease III protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E RHE_CH01731 xthA1; exodeoxyribonuclease III protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E RHE_CH01815 xthA2; exodeoxyribonuclease III protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E RHE_CH00732 probable exodeoxyribonuclease III protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E RHE_CH03970 xthA3; exodeoxyribonuclease III protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
E RHE_CH01879 recJ; single-stranded-DNA-specific exonuclease protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E RHE_CH02835 ligA; DNA ligase (NAD+) protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E RHE_CH00151 polA; DNA-directed DNA polymerase, DNA poyimerase I protein K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E RHE_CH02107 uvrA; excinuclease ABC subunit A protein K03701 uvrA; excinuclease ABC subunit A
E RHE_CH02563 uvrB; excinuclease ABC subunit B protein K03702 uvrB; excinuclease ABC subunit B
E RHE_CH01479 uvrC; excinuclease ABC subunit C protein K03703 uvrC; excinuclease ABC subunit C
E RHE_CH02819 uvrD2; DNA helicase II protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E RHE_CH00573 uvrD1; ATP-dependent DNA helicase protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E RHE_CH00151 polA; DNA-directed DNA polymerase, DNA poyimerase I protein K02335 polA; DNA polymerase I [EC:2.7.7.7]
E RHE_CH02835 ligA; DNA ligase (NAD+) protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F RHE_CH01667 rpoB; DNA-directed RNA polymerase beta chain protein K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F RHE_CH01668 rpoC; DNA-directed RNA polymerase beta` chain protein K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F RHE_CH01699 rpoA; DNA-directed RNA polymerase alpha chain protein K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F RHE_CH01384 rpoZ; DNA-directed RNA polymerase omega chain protein K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F RHE_CH02095 mfd; transcription-repair coupling factor (TRCF) protein K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E RHE_CH00388 mutS; DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS
D Molecular matchmaker
E RHE_CH00848 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E RHE_CH00276 xseA; exodeoxyribonuclease VII large subunit protein K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E RHE_CH00916 probable exodeoxyribonuclease VII small subunit protein K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E RHE_CH04083 dnaEch2; DNA polymerase III alpha subunit protein K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E RHE_CH01627 dnaEch1; DNA polymerase III alpha subunit protein K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E RHE_CH00318 dnaN; DNA polymerase III, beta chain protein K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E RHE_CH01457 putative DNA polymerase III, chi subunit protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
E RHE_CH04118 putative DNA polymerase III, delta subunit protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E RHE_CH02159 holB; DNA polymerase III delta prime subunit protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E RHE_CH02833 probable DNA polymerase III, epsilon subunit protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E RHE_CH00005 dnaQ; DNA polymerase III, epsilon chain protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E RHE_PE00402 probable polymerase epsilon subunit protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E RHE_CH00126 dnaX; DNA polymerase III, tau subunit protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E RHE_CH02835 ligA; DNA ligase (NAD+) protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E RHE_CH02819 uvrD2; DNA helicase II protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E RHE_CH00573 uvrD1; ATP-dependent DNA helicase protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E RHE_CH02108 ssb; single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein
E RHE_PF00110 probable DNA mismatch endonuclease protein K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E RHE_CH02323 recA; recombinase A protein K03553 recA; recombination protein RecA
E RHE_CH03481 ruvA; holliday junction DNA helicase protein K03550 ruvA; holliday junction DNA helicase RuvA
E RHE_CH03482 ruvB; holliday junction DNA helicase protein K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E RHE_CH03478 ruvC; crossover junction endoribonuclease protein K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E RHE_CH03875 priA; primosomal protein N` (replication factor Y) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D RecFOR pathway proteins
E RHE_CH02323 recA; recombinase A protein K03553 recA; recombination protein RecA
E RHE_CH01430 radA; DNA repair protein K04485 radA; DNA repair protein RadA/Sms
E RHE_CH00141 recF; DNA replication and repair protein K03629 recF; DNA replication and repair protein RecF
E RHE_CH02093 recG; ATP-dependent DNA helicase protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E RHE_CH01879 recJ; single-stranded-DNA-specific exonuclease protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E RHE_CH01394 recO; DNA repair protein K03584 recO; DNA repair protein RecO (recombination protein O)
E RHE_CH00123 recR; DNA recombination protein K06187 recR; recombination protein RecR
E RHE_CH02837 recN; DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N)
E RHE_CH03481 ruvA; holliday junction DNA helicase protein K03550 ruvA; holliday junction DNA helicase RuvA
E RHE_CH03482 ruvB; holliday junction DNA helicase protein K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E RHE_CH03478 ruvC; crossover junction endoribonuclease protein K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
E RHE_CH00026 probable nuclease/helicase protein, ATP dependent K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
E RHE_CH00027 hypothetical conserved protein K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D Other HR factor
D Archaeal homologous recombinant proteins
E RHE_CH01181 putative ATP-binding protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
E RHE_PE00250 hypothetical conserved protein K10979 ku; DNA end-binding protein Ku
E RHE_PE00249 hypothetical conserved protein K10979 ku; DNA end-binding protein Ku
E RHE_CH00616 putative DNA helicase protein K10979 ku; DNA end-binding protein Ku
E RHE_CH00618 putative DNA helicase protein K10979 ku; DNA end-binding protein Ku
E RHE_PE00251 putative DNA ligase (ATP) protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
E RHE_CH00617 putative DNA ligase protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
E RHE_PE00252 putative ATP-dependent DNA ligase protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F RHE_CH02110 gyrA; DNA gyrase subunit A protein K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F RHE_CH00012 gyrB; DNA gyrase subunit B protein K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F RHE_CH01638 topA; DNA topoisomerase I protein K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
F RHE_PE00209 probable DNA topoisomerase I protein K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F RHE_CH01590 hrm; bacterial nucleoid DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F RHE_CH01879 recJ; single-stranded-DNA-specific exonuclease protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F RHE_CH01394 recO; DNA repair protein K03584 recO; DNA repair protein RecO (recombination protein O)
F RHE_CH00123 recR; DNA recombination protein K06187 recR; recombination protein RecR
F RHE_CH02835 ligA; DNA ligase (NAD+) protein K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
F RHE_CH01533 himA; integration host factor alpha-subunit protein K04764 ihfA; integration host factor subunit alpha
F RHE_CH00399 ihfB; integration host factor beta-subunit protein K05788 ihfB; integration host factor subunit beta
E Supressor
F RHE_CH02953 recQ; ATP-dependent DNA helicase protein K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F RHE_CH02107 uvrA; excinuclease ABC subunit A protein K03701 uvrA; excinuclease ABC subunit A
F RHE_CH02563 uvrB; excinuclease ABC subunit B protein K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D RHE_CH01629 dinP; DNA damage inducible P protein K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D RHE_PF00149 dinB; DNA-directed DNA polymerase protein K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
C Other SOS response factors
D RHE_CH02323 recA; recombinase A protein K03553 recA; recombination protein RecA
D RHE_CH01928 lexA; transcriptional regulator repressor LexA protein K01356 lexA; repressor LexA [EC:3.4.21.88]
D RHE_CH02837 recN; DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N)
D RHE_PF00150 hypothetical conserved protein K14160 imuA; protein ImuA
D RHE_CH04085 hypothetical conserved protein K14160 imuA; protein ImuA
D RHE_CH04084 putative nucleotidyltransferase protein K14161 imuB; protein ImuB
D RHE_PF00151 putative nucleotidyltransferase protein K14161 imuB; protein ImuB
D RHE_PF00152 dnaEf; DNA polymerase III alpha subunit protein K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D RHE_CH02108 ssb; single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein
D RHE_CH00254 recX; DNA repair regulator protein K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D RHE_CH00549 lhr; ATP-dependent RNA/DNA helicase protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
C Modulation of nucleotide pools
D RHE_CH03766 mutT; NTP pyrophosphohydrolase protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D RHE_CH00330 dut; deoxyuridine 5`triphosphate nucleotidohydrolase protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D RHE_CH01753 nrd; ribonucleotide-diphosphate reductase protein K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D RHE_CH03716 nrdE; ribonucleotide-diphosphate reductase, alpha subunit protein K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D RHE_CH03715 nrdF; ribonucleoside-diphosphate reductase, beta subunit protein K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024