+D GENES KO
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KEGG Orthology (KO) - Rickettsia typhi Wilmington
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A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:rty00010]
D RT0478 ppdK; Pyruvate,orthophosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D RT0252 pdhA; Pyruvate decarboxylase K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D RT0253 pdhB; Pyruvate decarboxylase K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D RT0517 pdhC; Lipoate acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D RT0447 pdhD1; Diaphorase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RT0792 pdhD2; Diaphorase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
C 00020 Citrate cycle (TCA cycle) [PATH:rty00020]
D RT0832 gltA; (R)-citric synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D RT0786 acnA; Aconitase K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D RT0256 icd; IDH K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D RT0171 sucA; Alpha-ketoglutaric dehydrogenase K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D RT0170 sucB; dihydrolipoamide S-succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D RT0447 pdhD1; Diaphorase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RT0792 pdhD2; Diaphorase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RT0419 sucD; Succinate thiokinase K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D RT0420 sucC; Succinate thiokinase K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D RT0117 sdhA; Fumarate dehydrogenase K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D RT0086 sdhB; Fumarate dehydrogenase K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D RT0115 sdhC; succinate dehydrogenase cytochrome b-556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D RT0116 sdhD; succinate dehydrogenase hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D RT0657 fumC; Fumarase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D RT0365 mdh; Malic dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RT0252 pdhA; Pyruvate decarboxylase K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D RT0253 pdhB; Pyruvate decarboxylase K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D RT0517 pdhC; Lipoate acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
C 00030 Pentose phosphate pathway
D RT0290 rpiB; 5-phosphoribose isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
C 00040 Pentose and glucuronate interconversions
D RT0766 udg; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
C 00051 Fructose and mannose metabolism [PATH:rty00051]
D RT0494 exoC; Phosphomannose mutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D RT0290 rpiB; 5-phosphoribose isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
C 00052 Galactose metabolism
D RT0323 sugar epimerase K17716 capD; UDP-glucose 4-epimerase [EC:5.1.3.2]
C 00053 Ascorbate and aldarate metabolism
D RT0766 udg; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
C 00500 Starch and sucrose metabolism [PATH:rty00500]
D RT0701 possible beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:rty00520]
D RT0441 glmU; N-acetylglucosamine-1-phosphate uridyltransferase K11528 glmU; UDP-N-acetylglucosamine pyrophosphorylase [EC:2.7.7.23]
D RT0568 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D RT0240 murB; UDP-GlcNAc-enoylpyruvate reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D RT0324 rffE; UDP-GlcNAc-2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D RT0766 udg; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D RT0323 sugar epimerase K17716 capD; UDP-glucose 4-epimerase [EC:5.1.3.2]
D RT0494 exoC; Phosphomannose mutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
C 00620 Pyruvate metabolism [PATH:rty00620]
D RT0252 pdhA; Pyruvate decarboxylase K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D RT0253 pdhB; Pyruvate decarboxylase K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D RT0517 pdhC; Lipoate acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D RT0447 pdhD1; Diaphorase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RT0792 pdhD2; Diaphorase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RT0026 ackA; Acetokinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D RT0027 pta; Phosphoacylase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D RT0361 tme; Malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D RT0365 mdh; Malic dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RT0657 fumC; Fumarase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D RT0478 ppdK; Pyruvate,orthophosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D RT0722 fadA; 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:rty00630]
D RT0365 mdh; Malic dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RT0832 gltA; (R)-citric synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D RT0786 acnA; Aconitase K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D RT0722 fadA; 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RT0095 phbB; acetoacetyl-CoA reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36]
D RT0608 pccA; PCCase K01965 PCCA; propionyl-CoA carboxylase alpha chain [EC:6.4.1.3]
D RT0609 pccB; PCCase K01966 PCCB; propionyl-CoA carboxylase beta chain [EC:6.4.1.3 2.1.3.15]
D RT0482 conserved hypothetical protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RT0728 glyA; Serine aldolase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RT0447 pdhD1; Diaphorase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RT0792 pdhD2; Diaphorase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
C 00640 Propanoate metabolism [PATH:rty00640]
D RT0026 ackA; Acetokinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D RT0027 pta; Phosphoacylase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D RT0447 pdhD1; Diaphorase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RT0792 pdhD2; Diaphorase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RT0547 fadB; Beta-hydroxyacyl dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D RT0608 pccA; PCCase K01965 PCCA; propionyl-CoA carboxylase alpha chain [EC:6.4.1.3]
D RT0609 pccB; PCCase K01966 PCCB; propionyl-CoA carboxylase beta chain [EC:6.4.1.3 2.1.3.15]
D RT0420 sucC; Succinate thiokinase K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D RT0419 sucD; Succinate thiokinase K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
C 00650 Butanoate metabolism [PATH:rty00650]
D RT0722 fadA; 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RT0547 fadB; Beta-hydroxyacyl dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D RT0723 PhbC domain containing protein K03821 phaC; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaC [EC:2.3.1.304]
D RT0808 phbC; poly-beta-hydroxybutyrate polymerase K03821 phaC; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaC [EC:2.3.1.304]
D RT0676 conserved hypothetical protein K05973 phaZ; poly(3-hydroxybutyrate) depolymerase [EC:3.1.1.75]
D RT0095 phbB; acetoacetyl-CoA reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36]
D RT0117 sdhA; Fumarate dehydrogenase K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D RT0086 sdhB; Fumarate dehydrogenase K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D RT0115 sdhC; succinate dehydrogenase cytochrome b-556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D RT0116 sdhD; succinate dehydrogenase hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
C 00660 C5-Branched dibasic acid metabolism
D RT0420 sucC; Succinate thiokinase K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D RT0419 sucD; Succinate thiokinase K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
C 00562 Inositol phosphate metabolism [PATH:rty00562]
D RT0231 suhB; extragenic suppressor protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:rty00190]
D RT0346 nuoA; NADH dehydrogenase (ubiquinone) subunit A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D RT0345 nuoB; NADH dehydrogenase (ubiquinone) subunit B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D RT0344 nuoC; NADH dehydrogenase (ubiquinone) subunit C K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2]
D RT0343 nuoD; NADH dehydrogenase (ubiquinone) subunit D K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2]
D RT0342 nuoE; NADH dehydrogenase (ubiquinone) subunit E K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D RT0021 nuoF; NADH dehydrogenase (ubiquinone) subunit F K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D RT0784 nuoG; NADH dehydrogenase (ubiquinone) subunit G K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D RT0783 nuoH; NADH dehydrogenase (ubiquinone) subunit H K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D RT0782 nuoI; NADH dehydrogenase (ubiquinone) subunit I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D RT0777 nuoJ; NADH dehydrogenase (ubiquinone) subunit J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D RT0778 nuoK; NADH dehydrogenase (ubiquinone) subunit K K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D RT0779 nuoL; NADH dehydrogenase (ubiquinone) subunit L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D RT0780 nuoM; NADH dehydrogenase (ubiquinone) subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D RT0526 nuoN; NADH dehydrogenase (ubiquinone) subunit N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D RT0117 sdhA; Fumarate dehydrogenase K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D RT0086 sdhB; Fumarate dehydrogenase K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D RT0115 sdhC; succinate dehydrogenase cytochrome b-556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D RT0116 sdhD; succinate dehydrogenase hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D RT0261 petA; Complex III (mitochondrial electron transport) K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D RT0262 petB; Complex III (mitochondrial electron transport) K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D RT0263 fbcH; cytochrome c1 heme protein precursor K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D RT0207 cydA; cytochrome d ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D RT0208 cydB; cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D RT0245 cycM; cytochrome c K08738 CYC; cytochrome c
D RT0790 atpA; ATP synthase K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D RT0788 atpD; ATP synthase K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D RT0789 atpG; ATP synthase K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D RT0791 atpH; ATP synthase K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D RT0787 atpC; ATP synthase K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D RT0105 atpB; ATP synthase K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D RT0107 atpX; ATP synthase K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D RT0108 atpF; ATP synthase K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D RT0106 atpE; ATP synthase K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D RT0578 ppa; Diphosphate phosphohydrolase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation in photosynthetic organisms
C 00720 Carbon fixation pathways in prokaryotes
C 00680 Methane metabolism [PATH:rty00680]
D RT0728 glyA; Serine aldolase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RT0365 mdh; Malic dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D RT0026 ackA; Acetokinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D RT0027 pta; Phosphoacylase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
C 00910 Nitrogen metabolism [PATH:rty00910]
D RT0744 conserved hypothetical protein K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D RT0482 conserved hypothetical protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
C 00920 Sulfur metabolism
D RT0288 cysQ; 3prime(2prime),5prime-bisphosphonucleoside 3prime(2prime)-phosphohydrolase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:rty00061]
D RT0749 acpP; acyl carrier protein K02078 acpP; acyl carrier protein
D RT0720 fabD; [acyl-carrier protein] S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D RT0759 fabH; Beta-ketoacyl-ACP synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D RT0750 fabF; Beta-ketoacyl-ACP synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D RT0748 fabG; 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RT0007 fabZ; (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D RT0353 fabI; Enoyl-ACP reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:rty00071]
D RT0722 fadA; 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RT0547 fadB; Beta-hydroxyacyl dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D RT0611 aas; bifunctional protein Aas (2-acylglycerophosphoethanolamine acyltransferase and Acyl-acyl carrier protein synthetase) K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism
D RT0456 plsC; probable 1-acyl-sn-glycerol-3-phosphate O-acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 00564 Glycerophospholipid metabolism [PATH:rty00564]
D RT0429 gpsA; NAD(P)H-dependent dihydroxyacetone-phosphate reductase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D RT0456 plsC; probable 1-acyl-sn-glycerol-3-phosphate O-acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D RT0807 rickettsial conserved hypothetical protein K17717 pld; phospholipase D [EC:3.1.4.4]
D RT0611 aas; bifunctional protein Aas (2-acylglycerophosphoethanolamine acyltransferase and Acyl-acyl carrier protein synthetase) K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20]
D RT0410 cdsA; CDP-diacylglycerol synthase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D RT0234 pssA; CDP-diglycerine-serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D RT0233 psd; PS decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D RT0735 pgpA; phosphatidylglycerophosphatase K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27]
D RT0081 pgsA; 3-phosphatidyl-1prime-glycerol-3prime-phosphate synthase K08744 CRLS; cardiolipin synthase (CMP-forming) [EC:2.7.8.41]
C 00565 Ether lipid metabolism
D RT0807 rickettsial conserved hypothetical protein K17717 pld; phospholipase D [EC:3.1.4.4]
C 00600 Sphingolipid metabolism
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism
C 01040 Biosynthesis of unsaturated fatty acids [PATH:rty01040]
D RT0092 aco1; Acyl-CoA desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:rty00230]
D RT0211 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D RT0481 conserved hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D RT0077 ndk; NDK K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D RT0752 gmk; Deoxyguanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D RT0498 nrdA; Ribonucleotide reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D RT0497 nrdB; Ribonucleotide reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D RT0068 dgtP; Deoxy-GTPase K01129 dgt; dGTPase [EC:3.1.5.1]
D RT0285 gppA; Guanosine pentaphosphate phosphohydrolase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D RT0630 adk; Adenylic kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00240 Pyrimidine metabolism [PATH:rty00240]
D RT0144 pyrH; Uridine monophosphokinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D RT0077 ndk; NDK K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D RT0803 Maf-like protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D RT0367 pyrG; CTP synthetase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D RT0509 cmk; CMP kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D RT0063 dcd; Deoxycytidine triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D RT0498 nrdA; Ribonucleotide reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D RT0497 nrdB; Ribonucleotide reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D RT0679 tmk; TMPK K00943 tmk; dTMP kinase [EC:2.7.4.9]
D RT0387 dut; Deoxyuridine-triphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D RT0292 thyA; thymidylate synthase K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:rty00250]
D RT0046 aatA; Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RT0744 conserved hypothetical protein K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D RT0482 conserved hypothetical protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
C 00260 Glycine, serine and threonine metabolism [PATH:rty00260]
D RT0738 lysC; Aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D RT0306 asd; ASA dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D RT0728 glyA; Serine aldolase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RT0829 hemA; ALAS K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37]
D RT0447 pdhD1; Diaphorase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RT0792 pdhD2; Diaphorase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RT0234 pssA; CDP-diglycerine-serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
C 00270 Cysteine and methionine metabolism [PATH:rty00270]
D RT0764 metK; Adomet synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D RT0481 conserved hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D RT0738 lysC; Aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D RT0306 asd; ASA dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D RT0414 ilvE; Branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RT0046 aatA; Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RT0365 mdh; Malic dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
C 00280 Valine, leucine and isoleucine degradation [PATH:rty00280]
D RT0414 ilvE; Branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D RT0447 pdhD1; Diaphorase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RT0792 pdhD2; Diaphorase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RT0547 fadB; Beta-hydroxyacyl dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D RT0608 pccA; PCCase K01965 PCCA; propionyl-CoA carboxylase alpha chain [EC:6.4.1.3]
D RT0609 pccB; PCCase K01966 PCCB; propionyl-CoA carboxylase beta chain [EC:6.4.1.3 2.1.3.15]
D RT0722 fadA; 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:rty00290]
D RT0414 ilvE; Branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
C 00300 Lysine biosynthesis [PATH:rty00300]
D RT0738 lysC; Aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D RT0306 asd; ASA dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D RT0415 dapA; DHDPS K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D RT0137 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D RT0183 dapD; Succinyl-CoA:tetrahydrodipicolinate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D RT0865 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D RT0401 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D RT0585 murE; MurE synthetase [ambiguous] K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D RT0584 murF; synthetase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:rty00310]
D RT0170 sucB; dihydrolipoamide S-succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D RT0447 pdhD1; Diaphorase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RT0792 pdhD2; Diaphorase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RT0547 fadB; Beta-hydroxyacyl dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D RT0722 fadA; 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00220 Arginine biosynthesis [PATH:rty00220]
D RT0482 conserved hypothetical protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RT0744 conserved hypothetical protein K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D RT0046 aatA; Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
C 00330 Arginine and proline metabolism
D RT0046 aatA; Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
C 00340 Histidine metabolism
C 00350 Tyrosine metabolism
D RT0046 aatA; Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
C 00360 Phenylalanine metabolism
D RT0046 aatA; Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
C 00380 Tryptophan metabolism [PATH:rty00380]
D RT0170 sucB; dihydrolipoamide S-succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D RT0447 pdhD1; Diaphorase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RT0792 pdhD2; Diaphorase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RT0547 fadB; Beta-hydroxyacyl dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D RT0722 fadA; 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:rty00400]
D RT0046 aatA; Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism
D RT0547 fadB; Beta-hydroxyacyl dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
C 00430 Taurine and hypotaurine metabolism [PATH:rty00430]
D RT0744 conserved hypothetical protein K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D RT0027 pta; Phosphoacylase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D RT0026 ackA; Acetokinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism
D RT0860 phnP; phosphonate metabolism protein PhnP K06167 phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]
C 00450 Selenocompound metabolism [PATH:rty00450]
D RT0432 trxB1; NADP-thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D RT0500 trxB2; NADP-thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D RT0678 metS; MetRS K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:rty00460]
D RT0701 possible beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D RT0728 glyA; Serine aldolase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:rty00470]
D RT0042 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D RT0241 ddlB; Alanine:alanine ligase (ADP-forming) K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RT0396 murD; D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D RT0401 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
C 00480 Glutathione metabolism [PATH:rty00480]
D RT0131 pepA; Cytosol aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D RT0476 Glutathione S-alkyltransferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D RT0256 icd; IDH K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation
C 00540 Lipopolysaccharide biosynthesis [PATH:rty00540]
D RT0006 lpxA; UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D RT0246 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D RT0008 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D RT0716 rickettsial conserved hypothetical protein K09949 lpxI; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D RT0311 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D RT0705 lpxK; Lipid-A 4prime-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D RT0490 sugar isomerase protein KpsF/GutQ family K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D RT0070 kdsA; 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D RT0368 kdsB; CMP-2-keto-3-deoxyoctulosonic acid synthetase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D RT0048 waaA; 3-deoxy-D-manno-octulosonic-acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D RT0704 lpxL; lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
C 00542 O-Antigen repeat unit biosynthesis
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:rty00541]
D RT0323 sugar epimerase K17716 capD; UDP-glucose 4-epimerase [EC:5.1.3.2]
D RT0766 udg; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D RT0322 rmlD; dTDP-4-keto-L-rhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D RT0494 exoC; Phosphomannose mutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D RT0324 rffE; UDP-GlcNAc-2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
C 00550 Peptidoglycan biosynthesis [PATH:rty00550]
D RT0568 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D RT0240 murB; UDP-GlcNAc-enoylpyruvate reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D RT0239 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D RT0396 murD; D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D RT0585 murE; MurE synthetase [ambiguous] K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D RT0241 ddlB; Alanine:alanine ligase (ADP-forming) K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RT0584 murF; synthetase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D RT0411 uppS; Bactoprenyl-diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D RT0583 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D RT0398 murG; MurG transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D RT0794 mrcA; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D RT0185 pbpC; membrane carboxypeptidase/penicillin-binding protein PbpC K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D RT0553 ftsI1; cell division protein FtsI/penicillin-binding protein K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D RT0555 ftsI2; cell division protein FtsI/penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D RT0377 dacF; D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
C 00552 Teichoic acid biosynthesis
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:rty00730]
D RT0473 iscS1; cysteine desulfurase protein IscS/NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RT0474 iscS2; cysteine desulfurase protein IscS/NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RT0630 adk; Adenylic kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism
D RT0530 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00750 Vitamin B6 metabolism
C 00760 Nicotinate and nicotinamide metabolism [PATH:rty00760]
D RT0427 ppnK; DPN kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D RT0851 pntAB; Pyridine nucleotide transhydrogenase K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D RT0852 pntA; Nicotinamide nucleotide transhydrogenase K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D RT0058 pntB; Nicotinamide nucleotide transhydrogenase K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1]
C 00770 Pantothenate and CoA biosynthesis [PATH:rty00770]
D RT0717 coaE; Dephosphocoenzyme A kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D RT0566 acpS; Holo-ACP synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D RT0414 ilvE; Branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
C 00780 Biotin metabolism [PATH:rty00780]
D RT0750 fabF; Beta-ketoacyl-ACP synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D RT0748 fabG; 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RT0007 fabZ; (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D RT0353 fabI; Enoyl-ACP reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D RT0521 birA; Acetyl-CoA carboxylase biotin holoenzyme synthetase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:rty00785]
D RT0867 lipB; lipoate-protein ligase B K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D RT0727 lipA; lipoic acid synthetase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D RT0447 pdhD1; Diaphorase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RT0792 pdhD2; Diaphorase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RT0252 pdhA; Pyruvate decarboxylase K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1]
D RT0253 pdhB; Pyruvate decarboxylase K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
D RT0517 pdhC; Lipoate acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D RT0171 sucA; Alpha-ketoglutaric dehydrogenase K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D RT0170 sucB; dihydrolipoamide S-succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
C 00790 Folate biosynthesis [PATH:rty00790]
D RT0371 folE; GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D RT0524 folC; Folate polyglutamate synthetase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D RT0169 6-pyruvoyl tetrahydrobiopterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D RT0595 conserved hypothetical protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D RT0689 exsB; trans-regulatory protein ExsB K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D RT0060 conserved hypothetical protein K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
C 00670 One carbon pool by folate [PATH:rty00670]
D RT0501 folD; methylenetetrahydrofolate dehydrogenase (NADP+) K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D RT0728 glyA; Serine aldolase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D RT0198 fmt; Formylmethionyl-transfer ribonucleic synthetase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D RT0292 thyA; thymidylate synthase K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
D RT0448 5,10-methenyltetrahydrofolate synthetase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:rty00860]
D RT0829 hemA; ALAS K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37]
D RT0316 gltX1; Glutamic acid translase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RT0614 gltX2; Glutamic acid translase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RT0528 hemB; Aminolevulinate dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D RT0453 hemC; Porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D RT0877 hemE; Uroporphyrinogen III decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D RT0874 hemF; Coprogen oxidase K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3]
D RT0875 conserved hypothetical protein (predicted membrane protein) K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-]
D RT0876 hemH; Heme synthase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:rty00130]
D RT0681 ubiA; 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D RT0809 ubiD; 3-polyprenyl-4-hydroxybenzoate decarboxylase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98]
D RT0530 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D RT0613 ubiG; 3-demethylubiquinone-9 3-O-methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
D RT0548 monooxygenase K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
D RT0675 ubiE; ubiquinone/menaquinone biosynthesis methlytransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D RT0180 coq7; ubiquinone biosynthesis protein CoQ7 K06134 COQ7; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:rty00900]
D RT0722 fadA; 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RT0530 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D RT0439 idi; IPP isomerase K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2]
D RT0466 ispB; octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D RT0411 uppS; Bactoprenyl-diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation [PATH:rty00907]
D RT0547 fadB; Beta-hydroxyacyl dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis
D RT0322 rmlD; dTDP-4-keto-L-rhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
C 01055 Biosynthesis of vancomycin group antibiotics
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids [PATH:rty00946]
D RT0701 possible beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis
C 00261 Monobactam biosynthesis [PATH:rty00261]
D RT0738 lysC; Aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D RT0306 asd; ASA dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D RT0415 dapA; DHDPS K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D RT0137 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:rty00521]
D RT0231 suhB; extragenic suppressor protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D RT0322 rmlD; dTDP-4-keto-L-rhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
C 00525 Acarbose and validamycin biosynthesis
C 00401 Novobiocin biosynthesis
D RT0046 aatA; Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
C 00333 Prodigiosin biosynthesis
D RT0720 fabD; [acyl-carrier protein] S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D RT0748 fabG; 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RT0353 fabI; Enoyl-ACP reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D RT0749 acpP; acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:rty00999]
D RT0764 metK; Adomet synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D RT0701 possible beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:rty00362]
D RT0384 pcaH; Protocatechuate oxygenase K00449 pcaH; protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3]
D RT0547 fadB; Beta-hydroxyacyl dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D RT0722 fadA; 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00627 Aminobenzoate degradation
D RT0530 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation
C 00361 Chlorocyclohexane and chlorobenzene degradation
C 00623 Toluene degradation
C 00622 Xylene degradation
C 00633 Nitrotoluene degradation
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation
C 00791 Atrazine degradation
C 00930 Caprolactam degradation [PATH:rty00930]
D RT0547 fadB; Beta-hydroxyacyl dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
C 00626 Naphthalene degradation
C 00624 Polycyclic aromatic hydrocarbon degradation
D RT0384 pcaH; Protocatechuate oxygenase K00449 pcaH; protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3]
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:rty03020]
D RT0129 rpoB; RNA nucleotidyltransferase (DNA-directed) K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D RT0130 rpoC; RNA nucleotidyltransferase (DNA-directed) K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D RT0627 rpoA; RNA nucleotidyltransferase (DNA-directed) K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D RT0567 rpoZ; RNA nucleotidyltransferase (DNA-directed) K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:rty03010]
D RT0508 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D RT0050 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D RT0645 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D RT0335 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D RT0634 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D RT0091 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D RT0120 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D RT0637 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D RT0226 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D RT0652 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D RT0628 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D RT0119 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D RT0629 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D RT0638 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D RT0488 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D RT0869 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D RT0642 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D RT0090 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D RT0647 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D RT0625 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D RT0604 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D RT0126 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D RT0648 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D RT0651 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D RT0650 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D RT0639 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D RT0636 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D RT0128 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D RT0089 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D RT0127 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D RT0125 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D RT0225 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D RT0641 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D RT0632 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D RT0644 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D RT0626 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D RT0635 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D RT0024 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D RT0597 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D RT0736 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D RT0646 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D RT0649 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D RT0640 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D RT0594 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D RT0737 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D RT0038 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D RT0643 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D RT0633 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D RT0037 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D RT0760 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D RT0870 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D RT0598 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D RT0596 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D RT0443 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D RT0602 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RT0200 rrl; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RT0202 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:rty00970]
D RT0506 tRNA-Ala; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RT0562 tRNA-Ala; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RT0826 tRNA-Arg; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RT0467 tRNA-Arg; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RT0545 tRNA-Arg; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RT0267 tRNA-Asn; tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D RT0504 tRNA-Asp; tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D RT0349 tRNA-Cys; tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D RT0468 tRNA-Gln; tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D RT0016 tRNA-Glu; tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D RT0573 tRNA-Gly; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RT0654 tRNA-Gly; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RT0690 tRNA-His; tRNA-His K14226 tRNA-His; tRNA His
D RT0370 tRNA-Ile; tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D RT0663 tRNA-Leu; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RT0864 tRNA-Leu; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RT0571 tRNA-Leu; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RT0369 tRNA-Lys; tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D RT0227 tRNA-Met; tRNA-Met K14230 tRNA-Met; tRNA Met
D RT0036 tRNA-fMet; tRNA-Met K14230 tRNA-Met; tRNA Met
D RT0757 tRNA-Met; tRNA-Met K14230 tRNA-Met; tRNA Met
D RT0009 tRNA-Phe; tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D RT0801 tRNA-Pro; tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D RT0454 tRNA-Ser; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RT0721 tRNA-Ser; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RT0440 tRNA-Ser; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RT0149 tRNA-Thr; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RT0868 tRNA-Thr; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RT0054 tRNA-Thr; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RT0122 tRNA-Trp; tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D RT0655 tRNA-Tyr; tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D RT0510 tRNA-Val; tRNA-Val K14237 tRNA-Val; tRNA Val
D RT0624 tRNA-Val; tRNA-Val K14237 tRNA-Val; tRNA Val
D RT0316 gltX1; Glutamic acid translase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RT0614 gltX2; Glutamic acid translase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RT0141 gatA; Glu-AdT K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D RT0140 gatB; Glu-AdT K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D RT0142 gatC; Glu-AdT K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D RT0845 alaS; Alanine translase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D RT0134 aspS; Aspartic acid translase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D RT0839 glyQ; Glycyl translase K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D RT0838 glyS; Glycyl translase K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D RT0212 thrS; Threonine translase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D RT0770 serS; SerRS K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D RT0051 cysS; Cysteine translase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D RT0678 metS; MetRS K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D RT0198 fmt; Formylmethionyl-transfer ribonucleic synthetase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D RT0682 valS; Valine translase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D RT0407 leuS; Leucine translase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RT0606 ileS; Isoleucine translase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D RT0359 lysS; Lysine translase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6]
D RT0067 argS; Arginine translase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RT0372 proS; Proline translase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D RT0298 hisS; Histidine translase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D RT0403 pheS; Phenylalanine translase K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D RT0404 pheT; Phenylalanine translase K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D RT0544 tyrS; L-tyrosine-tRNATyr ligase (AMP-forming) K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RT0455 trpS; L-tryptophan-tRNATrp ligase (AMP-forming) K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:rty03060]
D RT0631 secY; preprotein translocase SecY subunit K03076 secY; preprotein translocase subunit SecY
D RT0123 secE; preprotein translocase SecE subunit K03073 secE; preprotein translocase subunit SecE
D RT0053 secG; protein-export membrane protein SecG K03075 secG; preprotein translocase subunit SecG
D RT0575 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D RT0022 secF; protein-export membrane protein secF K03074 secF; preprotein translocase subunit SecF
D RT0574 conserved hypothetical protein K03210 yajC; preprotein translocase subunit YajC
D RT0082 yidC; 60 kDa inner membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RT0564 secA; preprotein translocase SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D RT0062 secB; protein-export protein SecB K03071 secB; preprotein translocase subunit SecB
D RT0164 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D RT0854 srp; signal recognition particle RNA (4.5S RNA) K01983 ffs; SRP RNA
D RT0762 ftsY; cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor
D RT0734 tatA; TatA/E-like Sec-independent protein translocase protein K03116 tatA; sec-independent protein translocase protein TatA
D RT0769 tatC; Sec-independent protein translocase protein TatC K03118 tatC; sec-independent protein translocase protein TatC
D RT0020 lepB; Bacterial leader peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D RT0394 lspA; Bacterial leader peptidase I K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:rty04122]
D RT0473 iscS1; cysteine desulfurase protein IscS/NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RT0474 iscS2; cysteine desulfurase protein IscS/NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RT0296 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
C 03050 Proteasome
C 03018 RNA degradation [PATH:rty03018]
D RT0228 nudH; dinucleoside polyphosphate hydrolase, invasion protein A K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D RT0248 rne; ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D RT0489 pnp; Polynucleotide phosphorylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D RT0661 rhlE; probable ATP-dependent RNA helicase RhlE K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D RT0513 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D RT0428 conserved hypothetical protein K12574 rnj; ribonuclease J [EC:3.1.-.-]
D RT0176 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D RT0617 groEL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RT0014 pcnB; NTP polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:rty03030]
D RT0718 dnaQ; DNA nucleotidyltransferase (DNA-directed) K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RT0765 dnaE; DNA nucleotidyltransferase (DNA-directed) K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RT0856 dnaX; DNA nucleotidyltransferase (DNA-directed) K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RT0855 dnaX; DNA nucleotidyltransferase (DNA-directed) K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RT0163 holB; DNA nucleotidyltransferase (DNA-directed) K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RT0179 conserved hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RT0863 holC; probable DNA-directed DNA polymerase III chi subunit HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D RT0405 dnaN; DNA nucleotidyltransferase (DNA-directed) K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RT0531 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D RT0848 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D RT0824 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D RT0713 rnhA; Endoribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D RT0192 rnhB; Endoribonuclease H K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D RT0706 lig; DNA joinase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:rty03410]
D RT0731 nth; AP endonuclease class I K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D RT0340 mpg; DNA glycosidase I K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
D RT0833 DNA polymerase, bacteriophage-type K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D RT0671 xthA2; E.coli exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RT0251 xthA1; E.coli exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RT0515 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D RT0706 lig; DNA joinase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:rty03420]
D RT0586 mfd; transcription-repair coupling factor (superfamily helicase II) K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D RT0823 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
D RT0193 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
D RT0560 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
D RT0434 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RT0706 lig; DNA joinase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:rty03430]
D RT0289 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D RT0871 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D RT0434 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RT0669 xseA; E.coli exonuclease VII K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D RT0339 xseB; E.coli exonuclease VII K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D RT0515 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D RT0824 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D RT0765 dnaE; DNA nucleotidyltransferase (DNA-directed) K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RT0405 dnaN; DNA nucleotidyltransferase (DNA-directed) K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RT0856 dnaX; DNA nucleotidyltransferase (DNA-directed) K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RT0855 dnaX; DNA nucleotidyltransferase (DNA-directed) K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RT0179 conserved hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RT0163 holB; DNA nucleotidyltransferase (DNA-directed) K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RT0718 dnaQ; DNA nucleotidyltransferase (DNA-directed) K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RT0863 holC; probable DNA-directed DNA polymerase III chi subunit HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D RT0706 lig; DNA joinase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03440 Homologous recombination [PATH:rty03440]
D RT0515 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D RT0824 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D RT0100 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
D RT0536 possible RecO-like recombinational DNA repair protein K03584 recO; DNA repair protein RecO (recombination protein O)
D RT0425 recR; recombination protein RecR K06187 recR; recombination protein RecR
D RT0747 recA; recombinase A K03553 recA; recombination protein RecA
D RT0374 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D RT0375 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D RT0017 ruvC; Holliday junction nuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D RT0582 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D RT0765 dnaE; DNA nucleotidyltransferase (DNA-directed) K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RT0405 dnaN; DNA nucleotidyltransferase (DNA-directed) K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RT0856 dnaX; DNA nucleotidyltransferase (DNA-directed) K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RT0855 dnaX; DNA nucleotidyltransferase (DNA-directed) K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RT0179 conserved hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RT0163 holB; DNA nucleotidyltransferase (DNA-directed) K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RT0718 dnaQ; DNA nucleotidyltransferase (DNA-directed) K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RT0863 holC; probable DNA-directed DNA polymerase III chi subunit HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D RT0529 priA; primosomal protein N prime K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus and Lyssavirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:rty02010]
D RT0043 conserved hypothetical protein K07323 mlaC; phospholipid transport system substrate-binding protein
D RT0711 conserved hypothetical protein / possible ABC transporter substrate binding protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D RT0041 ABC transporter permease protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D RT0040 mkl; ribonucleotide ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D RT0013 znuA; probable zinc/manganese ABC transporter substrate binding protein K09815 znuA; zinc transport system substrate-binding protein
D RT0612 znuB; zinc/manganese ABC transporter permease protein K09816 znuB; zinc transport system permease protein
D RT0822 metal transport ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D RT0315 BioY family protein K03523 bioY; biotin transport system substrate-specific component
D RT0004 wzm; O-antigen export system permease protein K09690 wzm; homopolymeric O-antigen transport system permease protein
D RT0003 wzt; O-antigen export system ATP-binding protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D RT0694 conserved hypothetical protein K09808 lolC_E; lipoprotein-releasing system permease protein
D RT0695 ABC transporter ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D RT0818 ccmC; heme exporter protein C K02195 ccmC; heme exporter protein C
D RT0259 ccmB; heme exporter protein B K02194 ccmB; heme exporter protein B
D RT0781 ccmA; heme exporter protein A K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D RT0862 conserved hypothetical protein (possible transmembrane protein) K07091 lptF; lipopolysaccharide export system permease protein
D RT0756 conserved hypothetical protein K11720 lptG; lipopolysaccharide export system permease protein
D RT0493 ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D RT0376 msbA1; lipid A export ATP-binding/permease protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D RT0195 probable ATP binding cassette transporter K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter
D RT0305 aprD; alkaline proteinase secretion ATP-binding protein K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
C 02060 Phosphotransferase system (PTS)
C 03070 Bacterial secretion system [PATH:rty03070]
D RT0216 tolC; outer membrane protein TolC precursor K12340 tolC; outer membrane protein
D RT0575 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D RT0022 secF; protein-export membrane protein secF K03074 secF; preprotein translocase subunit SecF
D RT0123 secE; preprotein translocase SecE subunit K03073 secE; preprotein translocase subunit SecE
D RT0053 secG; protein-export membrane protein SecG K03075 secG; preprotein translocase subunit SecG
D RT0631 secY; preprotein translocase SecY subunit K03076 secY; preprotein translocase subunit SecY
D RT0574 conserved hypothetical protein K03210 yajC; preprotein translocase subunit YajC
D RT0082 yidC; 60 kDa inner membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RT0564 secA; preprotein translocase SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D RT0762 ftsY; cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor
D RT0062 secB; protein-export protein SecB K03071 secB; preprotein translocase subunit SecB
D RT0164 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D RT0734 tatA; TatA/E-like Sec-independent protein translocase protein K03116 tatA; sec-independent protein translocase protein TatA
D RT0769 tatC; Sec-independent protein translocase protein TatC K03118 tatC; sec-independent protein translocase protein TatC
D RT0034 virB3; probable type IV secretory system protein VirB3 K03198 virB3; type IV secretion system protein VirB3
D RT0277 trbG; probable VirB9-like conjugal transfer protein precursor K03204 virB9; type IV secretion system protein VirB9
D RT0281 virB9; VirB9 protein precursor of the type IV secretion system K03204 virB9; type IV secretion system protein VirB9
D RT0032 VirB6-like protein of the type IV secretion system K03201 virB6; type IV secretion system protein VirB6
D RT0031 VirB6-like protein of the type IV secretion system K03201 virB6; type IV secretion system protein VirB6
D RT0029 VirB6-like protein of the type IV secretion system K03201 virB6; type IV secretion system protein VirB6
D RT0030 VirB6-like protein of the type IV secretion system K03201 virB6; type IV secretion system protein VirB6
D RT0028 VirB6-like protein of the type IV secretion system K03201 virB6; type IV secretion system protein VirB6
D RT0278 VirB8-like protein of type IV secretion system K03203 virB8; type IV secretion system protein VirB8
D RT0280 VirB8-like protein of the Type IV secretion system K03203 virB8; type IV secretion system protein VirB8
D RT0282 virB10; VirB10 protein of the type IV secretion system K03195 virB10; type IV secretion system protein VirB10
D RT0033 virB4a; VirB4 protein precursor K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8]
D RT0771 virB4b; VirB4 protein precursor K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8]
D RT0283 virB11; VirB11 protein of the type IV secretion system K03196 virB11; type IV secretion system protein VirB11 [EC:7.4.2.8]
D RT0284 virD4; VirD4 protein of the type IV secretion system K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:rty02020]
D RT0412 envZ; osmolarity sensor protein EnvZ K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D RT0413 ompR; response regulator protein OmpR K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D RT0113 serine protease, HtrA/DegQ/DegS family K04771 degP; serine protease Do [EC:3.4.21.107]
D RT0589 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D RT0482 conserved hypothetical protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RT0603 ntrY; nitrogen regulation protein NtrY K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D RT0550 ntrX; nitrogen assimilation regulatory protein NtrX K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX
D RT0722 fadA; 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RT0221 histidine kinase sensor protein K07716 pleC; two-component system, cell cycle sensor histidine kinase PleC [EC:2.7.13.3]
D RT0229 response regulator protein K02488 pleD; two-component system, cell cycle response regulator [EC:2.7.7.65]
D RT0061 czcR; transcriptional activator protein CzcR K13584 ctrA; two-component system, cell cycle response regulator CtrA
D RT0261 petA; Complex III (mitochondrial electron transport) K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D RT0262 petB; Complex III (mitochondrial electron transport) K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D RT0263 fbcH; cytochrome c1 heme protein precursor K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D RT0245 cycM; cytochrome c K08738 CYC; cytochrome c
D RT0207 cydA; cytochrome d ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D RT0208 cydB; cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D RT0216 tolC; outer membrane protein TolC precursor K12340 tolC; outer membrane protein
D RT0324 rffE; UDP-GlcNAc-2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
D RT0261 petA; Complex III (mitochondrial electron transport) K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:rty02024]
D RT0082 yidC; 60 kDa inner membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RT0123 secE; preprotein translocase SecE subunit K03073 secE; preprotein translocase subunit SecE
D RT0053 secG; protein-export membrane protein SecG K03075 secG; preprotein translocase subunit SecG
D RT0631 secY; preprotein translocase SecY subunit K03076 secY; preprotein translocase subunit SecY
D RT0574 conserved hypothetical protein K03210 yajC; preprotein translocase subunit YajC
D RT0564 secA; preprotein translocase SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D RT0762 ftsY; cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor
D RT0062 secB; protein-export protein SecB K03071 secB; preprotein translocase subunit SecB
D RT0164 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis
C 02040 Flagellar assembly
D RT0847 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:rty01501]
D RT0462 ampG1; murein peptide permease protein AmpG K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D RT0216 tolC; outer membrane protein TolC precursor K12340 tolC; outer membrane protein
D RT0794 mrcA; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D RT0553 ftsI1; cell division protein FtsI/penicillin-binding protein K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D RT0555 ftsI2; cell division protein FtsI/penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:rty01502]
D RT0241 ddlB; Alanine:alanine ligase (ADP-forming) K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RT0042 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D RT0584 murF; synthetase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D RT0583 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D RT0398 murG; MurG transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:rty01503]
D RT0113 serine protease, HtrA/DegQ/DegS family K04771 degP; serine protease Do [EC:3.4.21.107]
D RT0216 tolC; outer membrane protein TolC precursor K12340 tolC; outer membrane protein
D RT0006 lpxA; UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:rty01000]
C 01001 Protein kinases [BR:rty01001]
D RT0412 envZ; osmolarity sensor protein EnvZ K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D RT0603 ntrY; nitrogen regulation protein NtrY K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D RT0221 histidine kinase sensor protein K07716 pleC; two-component system, cell cycle sensor histidine kinase PleC [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:rty01009]
D RT0828 htpG; heat shock protein HtpG K04079 HSP90A; molecular chaperone HtpG
C 01002 Peptidases and inhibitors [BR:rty01002]
D RT0394 lspA; Bacterial leader peptidase I K03101 lspA; signal peptidase II [EC:3.4.23.36]
D RT0392 conserved hypothetical protein K07010 K07010; putative glutamine amidotransferase
D RT0131 pepA; Cytosol aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D RT0865 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D RT0812 map; Methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D RT0469 probable aminopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D RT0172 Carboxypeptidase Taq K01299 E3.4.17.19; carboxypeptidase Taq [EC:3.4.17.19]
D RT0087 ftsH; cell division protein FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D RT0151 probable membrane associated zinc metalloprotease K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D RT0113 serine protease, HtrA/DegQ/DegS family K04771 degP; serine protease Do [EC:3.4.21.107]
D RT0165 ppcE; Post-proline cleaving enzyme K01322 PREP; prolyl oligopeptidase [EC:3.4.21.26]
D RT0272 ptrB; Protease II K01354 ptrB; oligopeptidase B [EC:3.4.21.83]
D RT0377 dacF; D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D RT0507 clpP; Caseinolytic protease K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D RT0437 lon; ATP-dependent protease La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D RT0020 lepB; Bacterial leader peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D RT0220 ctp; tail specific periplasmic protease precursor K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D RT0512 probable protease IV K04773 sppA; protease IV [EC:3.4.21.-]
D RT0390 ldcA; Carboxypeptidase IIW K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
D RT0309 hslV; heat shock protein ATP dependent protease HslV K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D RT0546 conserved hypothetical protein K06894 yfhM; alpha-2-macroglobulin
D RT0112 hflC; protease activity modulator protein HflC K04087 hflC; modulator of FtsH protease HflC
D RT0111 hflK; protease activity modulator protein HflK K04088 hflK; modulator of FtsH protease HflK
C 01003 Glycosyltransferases [BR:rty01003]
D RT0185 pbpC; membrane carboxypeptidase/penicillin-binding protein PbpC K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D RT0794 mrcA; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:rty01005]
D RT0006 lpxA; UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D RT0311 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D RT0246 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D RT0008 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D RT0716 rickettsial conserved hypothetical protein K09949 lpxI; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D RT0705 lpxK; Lipid-A 4prime-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D RT0704 lpxL; lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D RT0048 waaA; 3-deoxy-D-manno-octulosonic-acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D RT0070 kdsA; 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D RT0368 kdsB; CMP-2-keto-3-deoxyoctulosonic acid synthetase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D RT0490 sugar isomerase protein KpsF/GutQ family K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:rty01011]
D RT0568 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D RT0240 murB; UDP-GlcNAc-enoylpyruvate reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D RT0239 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D RT0396 murD; D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D RT0585 murE; MurE synthetase [ambiguous] K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D RT0241 ddlB; Alanine:alanine ligase (ADP-forming) K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D RT0042 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D RT0390 ldcA; Carboxypeptidase IIW K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
D RT0583 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D RT0398 murG; MurG transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D RT0579 MviN-like protein K03980 murJ; putative peptidoglycan lipid II flippase
D RT0794 mrcA; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D RT0185 pbpC; membrane carboxypeptidase/penicillin-binding protein PbpC K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D RT0553 ftsI1; cell division protein FtsI/penicillin-binding protein K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D RT0555 ftsI2; cell division protein FtsI/penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D RT0377 dacF; D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D RT0388 soluble lytic transglycosylase domain containing protein K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D RT0312 conserved hypothetical protein K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D RT0378 rlpA; rare lipoprotein A precursor K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
C 01004 Lipid biosynthesis proteins [BR:rty01004]
D RT0720 fabD; [acyl-carrier protein] S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D RT0759 fabH; Beta-ketoacyl-ACP synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D RT0750 fabF; Beta-ketoacyl-ACP synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D RT0748 fabG; 3-oxoacyl-[acyl-carrier protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D RT0007 fabZ; (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D RT0353 fabI; Enoyl-ACP reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D RT0092 aco1; Acyl-CoA desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D RT0456 plsC; probable 1-acyl-sn-glycerol-3-phosphate O-acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins
C 01006 Prenyltransferases [BR:rty01006]
D RT0466 ispB; octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D RT0411 uppS; Bactoprenyl-diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D RT0495 miaA; IPP transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D RT0681 ubiA; 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
C 01007 Amino acid related enzymes [BR:rty01007]
D RT0359 lysS; Lysine translase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6]
D RT0316 gltX1; Glutamic acid translase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RT0614 gltX2; Glutamic acid translase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RT0544 tyrS; L-tyrosine-tRNATyr ligase (AMP-forming) K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RT0455 trpS; L-tryptophan-tRNATrp ligase (AMP-forming) K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D RT0051 cysS; Cysteine translase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D RT0067 argS; Arginine translase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RT0678 metS; MetRS K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D RT0606 ileS; Isoleucine translase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D RT0682 valS; Valine translase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D RT0407 leuS; Leucine translase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RT0134 aspS; Aspartic acid translase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D RT0298 hisS; Histidine translase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D RT0839 glyQ; Glycyl translase K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D RT0838 glyS; Glycyl translase K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D RT0770 serS; SerRS K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D RT0372 proS; Proline translase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D RT0212 thrS; Threonine translase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D RT0845 alaS; Alanine translase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D RT0403 pheS; Phenylalanine translase K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D RT0404 pheT; Phenylalanine translase K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D RT0046 aatA; Aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D RT0829 hemA; ALAS K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37]
D RT0414 ilvE; Branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:rty00194]
D RT0787 atpC; ATP synthase K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D RT0788 atpD; ATP synthase K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D RT0789 atpG; ATP synthase K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D RT0790 atpA; ATP synthase K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D RT0791 atpH; ATP synthase K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D RT0107 atpX; ATP synthase K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D RT0108 atpF; ATP synthase K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D RT0106 atpE; ATP synthase K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D RT0105 atpB; ATP synthase K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D RT0104 rickettsial conserved hypothetical protein K02116 atpI; ATP synthase protein I
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:rty03000]
D RT0521 birA; Acetyl-CoA carboxylase biotin holoenzyme synthetase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D RT0237 BolA-like protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D RT0073 parB; chromosome partitioning protein ParB (Spo0J protein) K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D RT0102 conserved hypothetical protein K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D RT0098 conserved hypothetical protein K07735 algH; putative transcriptional regulator
D RT0804 dksA; DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D RT0558 mraZ; protein MraZ K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:rty03021]
D RT0627 rpoA; RNA nucleotidyltransferase (DNA-directed) K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D RT0129 rpoB; RNA nucleotidyltransferase (DNA-directed) K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D RT0130 rpoC; RNA nucleotidyltransferase (DNA-directed) K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D RT0567 rpoZ; RNA nucleotidyltransferase (DNA-directed) K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D RT0847 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D RT0294 rpoH; RNA polymerase sigma 32 subunit (heat shock sigma factor) K03089 rpoH; RNA polymerase sigma-32 factor
D RT0540 nusA; transcription elongation protein NusA (N utilization substance protein A) K02600 nusA; transcription termination/antitermination protein NusA
D RT0152 nusB; transcription termination protein NusB (N utilization substance protein B) K03625 nusB; transcription antitermination protein NusB
D RT0124 nusG; transcription antitermination protein NusG (N utilization substance protein G) K02601 nusG; transcription termination/antitermination protein NusG
D RT0804 dksA; DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D RT0850 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D RT0513 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:rty03019]
D RT0248 rne; ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D RT0019 rnc; RNase D K03685 rnc; ribonuclease III [EC:3.1.26.3]
D RT0428 conserved hypothetical protein K12574 rnj; ribonuclease J [EC:3.1.-.-]
D RT0661 rhlE; probable ATP-dependent RNA helicase RhlE K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D RT0489 pnp; Polynucleotide phosphorylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D RT0513 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D RT0176 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D RT0617 groEL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RT0014 pcnB; NTP polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D RT0228 nudH; dinucleoside polyphosphate hydrolase, invasion protein A K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
C 03041 Spliceosome
C 03011 Ribosome [BR:rty03011]
D RT0508 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D RT0050 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D RT0645 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D RT0335 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D RT0634 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D RT0091 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D RT0120 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D RT0637 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D RT0226 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D RT0652 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D RT0628 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D RT0119 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D RT0629 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D RT0638 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D RT0488 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D RT0869 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D RT0642 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D RT0090 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D RT0647 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D RT0625 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D RT0604 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D RT0126 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D RT0648 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D RT0651 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D RT0650 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D RT0639 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D RT0636 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D RT0089 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D RT0127 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D RT0125 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D RT0128 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D RT0225 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D RT0641 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D RT0632 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D RT0644 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D RT0626 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D RT0635 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D RT0024 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D RT0597 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D RT0736 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D RT0646 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D RT0649 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D RT0640 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D RT0737 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D RT0038 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D RT0643 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D RT0633 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D RT0037 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D RT0760 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D RT0870 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D RT0598 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D RT0596 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D RT0443 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D RT0594 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D RT0202 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RT0602 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RT0200 rrl; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:rty03009]
D RT0019 rnc; RNase D K03685 rnc; ribonuclease III [EC:3.1.26.3]
D RT0018 Era-like GTP-binding protein K03595 era; GTPase
D RT0831 GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-]
D RT0804 dksA; DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D RT0540 nusA; transcription elongation protein NusA (N utilization substance protein A) K02600 nusA; transcription termination/antitermination protein NusA
D RT0152 nusB; transcription termination protein NusB (N utilization substance protein B) K03625 nusB; transcription antitermination protein NusB
D RT0124 nusG; transcription antitermination protein NusG (N utilization substance protein G) K02601 nusG; transcription termination/antitermination protein NusG
D RT0666 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D RT0533 probable methylase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D RT0159 conserved hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D RT0075 gidB; glucose inhibited division protein B K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D RT0557 mraW; S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D RT0732 conserved hypothetical protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D RT0543 tlyA; hemolysin K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D RT0656 tRNA/rRNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D RT0153 ftsJ; rRNA (uridine-2'-O-)-methyltransferase (23S ribosomal RNA methyltransferase) K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D RT0532 rluB; Pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D RT0249 rluC; Pseudouridine synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D RT0834 rluD; Pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D RT0337 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
D RT0248 rne; ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D RT0321 possible Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D RT0661 rhlE; probable ATP-dependent RNA helicase RhlE K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D RT0673 engA; probable GTP-binding protein EngA K03977 engA; GTPase
D RT0837 conserved hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D RT0422 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D RT0541 conserved hypothetical protein K09748 rimP; ribosome maturation factor RimP
D RT0799 conserved hypothetical protein K09710 ybeB; ribosome-associated protein
D RT0726 conserved hypothetical protein K07042 ybeY; probable rRNA maturation factor
D RT0592 probable GTP-binding protein K06942 ychF; ribosome-binding ATPase
C 03016 Transfer RNA biogenesis [BR:rty03016]
D RT0316 gltX1; Glutamic acid translase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RT0614 gltX2; Glutamic acid translase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RT0372 proS; Proline translase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D RT0606 ileS; Isoleucine translase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D RT0407 leuS; Leucine translase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RT0678 metS; MetRS K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D RT0067 argS; Arginine translase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RT0134 aspS; Aspartic acid translase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D RT0845 alaS; Alanine translase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D RT0212 thrS; Threonine translase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D RT0770 serS; SerRS K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D RT0051 cysS; Cysteine translase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D RT0682 valS; Valine translase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D RT0298 hisS; Histidine translase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D RT0403 pheS; Phenylalanine translase K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D RT0404 pheT; Phenylalanine translase K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D RT0544 tyrS; L-tyrosine-tRNATyr ligase (AMP-forming) K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RT0455 trpS; L-tryptophan-tRNATrp ligase (AMP-forming) K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D RT0307 pkcI; protein kinase C inhibitor 1 K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D RT0846 truA; Pseudouridine synthase K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D RT0487 truB; Pseudouridine synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D RT0473 iscS1; cysteine desulfurase protein IscS/NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RT0474 iscS2; cysteine desulfurase protein IscS/NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RT0837 conserved hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D RT0495 miaA; IPP transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D RT0745 thdF; thiophene and furan oxidation protein; tRNA modification GTPase K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D RT0076 gidA; glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D RT0288 cysQ; 3prime(2prime),5prime-bisphosphonucleoside 3prime(2prime)-phosphohydrolase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D RT0599 rnpA; ribonuclease P K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D RT0477 ssrA; tmRNA involved in trans translation (10SaRNA) K01978 rnpB; M1 RNA
D RT0619 rph; Phosphate-dependent exonuclease K00989 rph; ribonuclease PH [EC:2.7.7.56]
D RT0449 rnd2; ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5]
D RT0408 rnd1; ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5]
D RT0072 ABC transporter ATP-binding protein K06020 ettA; energy-dependent translational throttle protein EttA
D RT0359 lysS; Lysine translase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6]
D RT0839 glyQ; Glycyl translase K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D RT0838 glyS; Glycyl translase K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D RT0819 Cytosine aminohydrolase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D RT0010 NifR3-like protein K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D RT0795 miaB2; tRNA-methylthiotransferase (MiaB protein) K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D RT0402 miaB1; tRNA-methylthiotransferase (MiaB protein) K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5]
D RT0025 trmD; tRNA (guanine-N(1)-)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D RT0296 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D RT0471 iscA2; iron-binding protein IscA/HesB K13628 iscA; iron-sulfur cluster assembly protein
D RT0451 conserved hypothetical protein K06980 ygfZ; tRNA-modifying protein YgfZ
D RT0204 queA; S-adenosylmethionine tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D RT0689 exsB; trans-regulatory protein ExsB K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D RT0169 6-pyruvoyl tetrahydrobiopterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D RT0595 conserved hypothetical protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D RT0060 conserved hypothetical protein K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D RT0840 conserved hypothetical protein K09765 queH; epoxyqueuosine reductase [EC:1.17.99.6]
D RT0707 tgt; Guanine insertion enzyme K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D RT0088 mesJ; probable cell cycle ATPase MesJ K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D RT0537 conserved hypothetical protein K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D RT0093 gcp; Glycoprotease K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D RT0012 conserved hypothetical protein K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D RT0489 pnp; Polynucleotide phosphorylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:rty03012]
D RT0539 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D RT0518 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D RT0049 tsf; elongation factor Ts K02357 tsf; elongation factor Ts
D RT0653 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D RT0121 fusA; elongation factor G K02355 fusA; elongation factor G
D RT0516 prfA; peptide chain release factor 1 (RF-1) K02835 prfA; peptide chain release factor 1
D RT0143 frr; ribosome recycling factor K02838 frr; ribosome recycling factor
D RT0836 hemK; bifunctional methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D RT0593 pth; Peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D RT0802 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D RT0230 efp; elongation factor P K02356 efp; elongation factor P
D RT0265 prfB; peptide chain release factor 2 (RF-2) K02836 prfB; peptide chain release factor 2
C 03110 Chaperones and folding catalysts [BR:rty03110]
D RT0094 clpB; ATP-binding ClpB chaperone K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D RT0687 clpX; ATP-dependent Clp protease ATP and substrate binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D RT0310 hslU; ATP-dependent protease ATP-binding subunit HslU K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D RT0828 htpG; heat shock protein HtpG K04079 HSP90A; molecular chaperone HtpG
D RT0176 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D RT0190 hscA; DnaK-like chaperone protein HscA K04044 hscA; molecular chaperone HscA
D RT0617 groEL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RT0175 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D RT0191 hscB; DnaJ-like chaperone protein HscB K04082 hscB; molecular chaperone HscB
D RT0620 grpE; HSP-70 cofactor K03687 GRPE; molecular chaperone GrpE
D RT0618 groES; 10 kDa chaperonin K04078 groES; chaperonin GroES
D RT0113 serine protease, HtrA/DegQ/DegS family K04771 degP; serine protease Do [EC:3.4.21.107]
D RT0087 ftsH; cell division protein FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D RT0105 atpB; ATP synthase K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D RT0062 secB; protein-export protein SecB K03071 secB; preprotein translocase subunit SecB
D RT0561 conserved hypothetical protein K09796 pccA; periplasmic copper chaperone A
D RT0002 trxA; thioredoxin K03671 TXN; thioredoxin
D RT0194 grxC1; glutaredoxin 3 K03676 grxC; glutaredoxin 3
D RT0730 grxC2; glutaredoxin 3 K07390 grxD; monothiol glutaredoxin
C 04131 Membrane trafficking [BR:rty04131]
D RT0077 ndk; NDK K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D RT0828 htpG; heat shock protein HtpG K04079 HSP90A; molecular chaperone HtpG
C 04121 Ubiquitin system [BR:rty04121]
C 03051 Proteasome [BR:rty03051]
D RT0828 htpG; heat shock protein HtpG K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:rty03032]
D RT0713 rnhA; Endoribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D RT0162 hupA; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D RT0703 ihfA; integration host factor alpha subunit K04764 ihfA; integration host factor subunit alpha
D RT0511 ihfB; integration host factor beta subunit K05788 ihfB; integration host factor subunit beta
D RT0589 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D RT0531 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D RT0848 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D RT0824 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D RT0765 dnaE; DNA nucleotidyltransferase (DNA-directed) K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RT0405 dnaN; DNA nucleotidyltransferase (DNA-directed) K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RT0863 holC; probable DNA-directed DNA polymerase III chi subunit HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D RT0179 conserved hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RT0163 holB; DNA nucleotidyltransferase (DNA-directed) K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RT0718 dnaQ; DNA nucleotidyltransferase (DNA-directed) K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RT0856 dnaX; DNA nucleotidyltransferase (DNA-directed) K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RT0855 dnaX; DNA nucleotidyltransferase (DNA-directed) K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RT0192 rnhB; Endoribonuclease H K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D RT0706 lig; DNA joinase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D RT0196 gyrA; DNA gyrase K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D RT0569 gyrB; DNA gyrase K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D RT0065 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D RT0219 parE; DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D RT0317 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:rty03036]
D RT0019 rnc; RNase D K03685 rnc; ribonuclease III [EC:3.1.26.3]
D RT0162 hupA; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D RT0703 ihfA; integration host factor alpha subunit K04764 ihfA; integration host factor subunit alpha
D RT0511 ihfB; integration host factor beta subunit K05788 ihfB; integration host factor subunit beta
D RT0589 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D RT0793 conserved hypothetical protein K04047 dps; starvation-inducible DNA-binding protein
D RT0243 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D RT0555 ftsI2; cell division protein FtsI/penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D RT0811 ftsK; DNA translocase cell division protein FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D RT0556 rickettsial conserved hypothetical protein K03586 ftsL; cell division protein FtsL
D RT0242 ftsQ; cell division protein FtsQ K03589 ftsQ; cell division protein FtsQ
D RT0397 ftsW; cell division protein FtsW K03588 ftsW; cell division protein FtsW
D RT0658 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D RT0203 probable ATPase K06916 zapE; cell division protein ZapE
D RT0755 mreB; rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D RT0754 mreC; rod shape-determining protein K03570 mreC; rod shape-determining protein MreC
D RT0271 rodA; rod shape determining protein K05837 rodA; rod shape determining protein RodA
D RT0074 parA; chromosome partitioning protein ParA (Soj protein) K03496 parA; chromosome partitioning protein
D RT0132 conserved hypothetical protein K03496 parA; chromosome partitioning protein
D RT0073 parB; chromosome partitioning protein ParB (Spo0J protein) K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D RT0065 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D RT0219 parE; DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D RT0076 gidA; glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D RT0075 gidB; glucose inhibited division protein B K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D RT0805 xerC; DNA integrase/recombinase XerC K03733 xerC; integrase/recombinase XerC
D RT0350 xerD; integrase/recombinase K04763 xerD; integrase/recombinase XerD
D RT0110 mrp; ATP-binding protein Mrp K03593 mrp; ATP-binding protein involved in chromosome partitioning
D RT0035 engB; probable GTP-binding protein EngB K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:rty03400]
D RT0340 mpg; DNA glycosidase I K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
D RT0731 nth; AP endonuclease class I K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D RT0387 dut; Deoxyuridine-triphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D RT0833 DNA polymerase, bacteriophage-type K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D RT0671 xthA2; E.coli exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RT0251 xthA1; E.coli exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RT0515 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D RT0706 lig; DNA joinase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D RT0823 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
D RT0193 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
D RT0560 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
D RT0434 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D RT0129 rpoB; RNA nucleotidyltransferase (DNA-directed) K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D RT0130 rpoC; RNA nucleotidyltransferase (DNA-directed) K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D RT0627 rpoA; RNA nucleotidyltransferase (DNA-directed) K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D RT0567 rpoZ; RNA nucleotidyltransferase (DNA-directed) K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D RT0586 mfd; transcription-repair coupling factor (superfamily helicase II) K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D RT0289 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D RT0871 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D RT0669 xseA; E.coli exonuclease VII K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D RT0339 xseB; E.coli exonuclease VII K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D RT0765 dnaE; DNA nucleotidyltransferase (DNA-directed) K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D RT0405 dnaN; DNA nucleotidyltransferase (DNA-directed) K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D RT0863 holC; probable DNA-directed DNA polymerase III chi subunit HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D RT0179 conserved hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D RT0163 holB; DNA nucleotidyltransferase (DNA-directed) K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D RT0718 dnaQ; DNA nucleotidyltransferase (DNA-directed) K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D RT0856 dnaX; DNA nucleotidyltransferase (DNA-directed) K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RT0855 dnaX; DNA nucleotidyltransferase (DNA-directed) K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D RT0824 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D RT0747 recA; recombinase A K03553 recA; recombination protein RecA
D RT0374 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D RT0375 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D RT0017 ruvC; Holliday junction nuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D RT0529 priA; primosomal protein N prime K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D RT0534 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D RT0100 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
D RT0582 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D RT0536 possible RecO-like recombinational DNA repair protein K03584 recO; DNA repair protein RecO (recombination protein O)
D RT0425 recR; recombination protein RecR K06187 recR; recombination protein RecR
D RT0173 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D RT0719 ATP-dependent helicase/nuclease K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
D RT0391 conserved hypothetical protein K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D RT0196 gyrA; DNA gyrase K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D RT0569 gyrB; DNA gyrase K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D RT0317 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D RT0162 hupA; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D RT0703 ihfA; integration host factor alpha subunit K04764 ihfA; integration host factor subunit alpha
D RT0511 ihfB; integration host factor beta subunit K05788 ihfB; integration host factor subunit beta
D RT0498 nrdA; Ribonucleotide reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D RT0497 nrdB; Ribonucleotide reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:rty03029]
D RT0262 petB; Complex III (mitochondrial electron transport) K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D RT0539 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D RT0518 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D RT0049 tsf; elongation factor Ts K02357 tsf; elongation factor Ts
D RT0653 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D RT0121 fusA; elongation factor G K02355 fusA; elongation factor G
D RT0018 Era-like GTP-binding protein K03595 era; GTPase
D RT0544 tyrS; L-tyrosine-tRNATyr ligase (AMP-forming) K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RT0407 leuS; Leucine translase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RT0134 aspS; Aspartic acid translase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D RT0067 argS; Arginine translase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RT0141 gatA; Glu-AdT K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D RT0140 gatB; Glu-AdT K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D RT0142 gatC; Glu-AdT K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D RT0824 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D RT0150 omp1; outer membrane protein Omp1 K07277 SAM50; outer membrane protein insertion porin family
D RT0176 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D RT0620 grpE; HSP-70 cofactor K03687 GRPE; molecular chaperone GrpE
D RT0617 groEL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RT0618 groES; 10 kDa chaperonin K04078 groES; chaperonin GroES
D RT0175 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D RT0473 iscS1; cysteine desulfurase protein IscS/NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RT0474 iscS2; cysteine desulfurase protein IscS/NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RT0191 hscB; DnaJ-like chaperone protein HscB K04082 hscB; molecular chaperone HscB
D RT0730 grxC2; glutaredoxin 3 K07390 grxD; monothiol glutaredoxin
D RT0110 mrp; ATP-binding protein Mrp K03593 mrp; ATP-binding protein involved in chromosome partitioning
D RT0082 yidC; 60 kDa inner membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RT0576 Sco2-like protein K07152 SCO1; protein SCO1
D RT0828 htpG; heat shock protein HtpG K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:rty02000]
D RT0376 msbA1; lipid A export ATP-binding/permease protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D RT0195 probable ATP binding cassette transporter K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter
D RT0691 msbA2; lipid A export ATP-binding/permease protein MsbA K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D RT0205 ABC transporter ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D RT0305 aprD; alkaline proteinase secretion ATP-binding protein K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D RT0711 conserved hypothetical protein / possible ABC transporter substrate binding protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D RT0041 ABC transporter permease protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D RT0040 mkl; ribonucleotide ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D RT0043 conserved hypothetical protein K07323 mlaC; phospholipid transport system substrate-binding protein
D RT0355 conserved hypothetical protein K01989 K01989; putative tryptophan/tyrosine transport system substrate-binding protein
D RT0356 ABC transporter permease protein K05832 K05832; putative tryptophan/tyrosine transport system permease protein
D RT0357 ABC transporter ATP binding protein K05833 K05833; putative tryptophan/tyrosine transport system ATP-binding protein
D RT0139 glnH; glutamine-binding periplasmic protein GlnH K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D RT0118 glnP; glutamine transport system permease protein GlnP K02029 ABC.PA.P; polar amino acid transport system permease protein
D RT0859 glnQ; glutamine transport ATP-binding protein GlnQ K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D RT0013 znuA; probable zinc/manganese ABC transporter substrate binding protein K09815 znuA; zinc transport system substrate-binding protein
D RT0612 znuB; zinc/manganese ABC transporter permease protein K09816 znuB; zinc transport system permease protein
D RT0822 metal transport ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D RT0315 BioY family protein K03523 bioY; biotin transport system substrate-specific component
D RT0004 wzm; O-antigen export system permease protein K09690 wzm; homopolymeric O-antigen transport system permease protein
D RT0003 wzt; O-antigen export system ATP-binding protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D RT0862 conserved hypothetical protein (possible transmembrane protein) K07091 lptF; lipopolysaccharide export system permease protein
D RT0756 conserved hypothetical protein K11720 lptG; lipopolysaccharide export system permease protein
D RT0493 ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D RT0694 conserved hypothetical protein K09808 lolC_E; lipoprotein-releasing system permease protein
D RT0695 ABC transporter ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D RT0818 ccmC; heme exporter protein C K02195 ccmC; heme exporter protein C
D RT0259 ccmB; heme exporter protein B K02194 ccmB; heme exporter protein B
D RT0781 ccmA; heme exporter protein A K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D RT0873 proP7; proline/betaine transporter ProP7 K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D RT0841 proP6; proline/betaine transporter ProP6 K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D RT0078 glpT; glycerol-3-phosphate transporter K02445 glpT; MFS transporter, OPA family, glycerol-3-phosphate transporter
D RT0462 ampG1; murein peptide permease protein AmpG K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D RT0693 bcr2; bicyclomycin resistance protein K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D RT0591 bcr1; bicyclomycin resistance protein K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D RT0146 emrB; multidrug resistance protein B K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D RT0476 Glutathione S-alkyltransferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D RT0083 conserved hypothetical protein K16053 ybdG; miniconductance mechanosensitive channel
D RT0572 mgtE; magnesium transporter K06213 mgtE; magnesium transporter
D RT0299 tolQ; TolQ protein K03562 tolQ; biopolymer transport protein TolQ
D RT0300 tolR; TolR protein K03560 tolR; biopolymer transport protein TolR
D RT0697 conserved hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D RT0216 tolC; outer membrane protein TolC precursor K12340 tolC; outer membrane protein
D RT0150 omp1; outer membrane protein Omp1 K07277 SAM50; outer membrane protein insertion porin family
D RT0174 probable lipoprotein K05807 bamD; outer membrane protein assembly factor BamD
D RT0492 rickettsial conserved hypothetical protein K09774 lptA; lipopolysaccharide export system protein LptA
D RT0491 rickettsial conserved hypothetical protein K11719 lptC; lipopolysaccharide export system protein LptC
D RT0668 ostA; probable organic solvent tolerance protein OstA K04744 lptD; LPS-assembly protein
D RT0725 tlyC; hemolysin C K06189 corC; hemolysin (HlyC) family protein
D RT0820 p34 protein/probable cation transporter K13283 fieF; ferrous-iron efflux pump FieF
D RT0056 conserved hypothetical protein K15270 sam; S-adenosylmethionine uptake transporter
D RT0798 kefB; glutathione-regulated potassium-efflux system K03455 KEA1_2_3; K+:H+ antiporter
D RT0258 conserved hypothetical protein K05566 mnhB; multicomponent Na+:H+ antiporter subunit B
D RT0276 conserved hypothetical protein K05567 mnhC; multicomponent Na+:H+ antiporter subunit C
D RT0275 HyfB domain containing protein K05568 mnhD; multicomponent Na+:H+ antiporter subunit D
D RT0274 HyfB domain containing protein K05568 mnhD; multicomponent Na+:H+ antiporter subunit D
D RT0273 HyfB domain containing protein K05568 mnhD; multicomponent Na+:H+ antiporter subunit D
D RT0145 conserved hypothetical protein K05569 mnhE; multicomponent Na+:H+ antiporter subunit E
D RT0549 possible Na+/H+ antiporter K05570 mnhF; multicomponent Na+:H+ antiporter subunit F
D RT0257 rickettsial conserved hypothetical protein K05571 mnhG; multicomponent Na+:H+ antiporter subunit G
D RT0579 MviN-like protein K03980 murJ; putative peptidoglycan lipid II flippase
D RT0360 conserved hypothetical protein K13936 mdcF; malonate transporter and related proteins
D RT0430 conserved hypothetical protein K24180 mleP; malate permease and related proteins
D RT0397 ftsW; cell division protein FtsW K03588 ftsW; cell division protein FtsW
D RT0381 conserved hypothetical protein K07243 FTR; high-affinity iron transporter
D RT0672 rickettsial conserved hypothetical protein K15383 K15383; MtN3 and saliva related transmembrane protein
D RT0758 pal; peptidoglycan-associated lipoprotein precursor K03640 pal; peptidoglycan-associated lipoprotein
D RT0293 tolB; TolB protein precursor K03641 tolB; TolB protein
D RT0235 emrA; multidrug resistance protein A K03543 emrA; membrane fusion protein, multidrug efflux system
D RT0304 aprE; alkaline proteinase secretion protein K12537 hasE; membrane fusion protein, type I secretion system
D RT0698 ccmF; cytochrome c-type biogenesis protein CcmF K02198 ccmF; cytochrome c-type biogenesis protein CcmF
C 02044 Secretion system [BR:rty02044]
D RT0216 tolC; outer membrane protein TolC precursor K12340 tolC; outer membrane protein
D RT0305 aprD; alkaline proteinase secretion ATP-binding protein K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D RT0304 aprE; alkaline proteinase secretion protein K12537 hasE; membrane fusion protein, type I secretion system
D RT0034 virB3; probable type IV secretory system protein VirB3 K03198 virB3; type IV secretion system protein VirB3
D RT0033 virB4a; VirB4 protein precursor K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8]
D RT0771 virB4b; VirB4 protein precursor K03199 virB4; type IV secretion system protein VirB4 [EC:7.4.2.8]
D RT0032 VirB6-like protein of the type IV secretion system K03201 virB6; type IV secretion system protein VirB6
D RT0031 VirB6-like protein of the type IV secretion system K03201 virB6; type IV secretion system protein VirB6
D RT0029 VirB6-like protein of the type IV secretion system K03201 virB6; type IV secretion system protein VirB6
D RT0030 VirB6-like protein of the type IV secretion system K03201 virB6; type IV secretion system protein VirB6
D RT0028 VirB6-like protein of the type IV secretion system K03201 virB6; type IV secretion system protein VirB6
D RT0278 VirB8-like protein of type IV secretion system K03203 virB8; type IV secretion system protein VirB8
D RT0280 VirB8-like protein of the Type IV secretion system K03203 virB8; type IV secretion system protein VirB8
D RT0277 trbG; probable VirB9-like conjugal transfer protein precursor K03204 virB9; type IV secretion system protein VirB9
D RT0281 virB9; VirB9 protein precursor of the type IV secretion system K03204 virB9; type IV secretion system protein VirB9
D RT0282 virB10; VirB10 protein of the type IV secretion system K03195 virB10; type IV secretion system protein VirB10
D RT0283 virB11; VirB11 protein of the type IV secretion system K03196 virB11; type IV secretion system protein VirB11 [EC:7.4.2.8]
D RT0284 virD4; VirD4 protein of the type IV secretion system K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D RT0564 secA; preprotein translocase SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D RT0062 secB; protein-export protein SecB K03071 secB; preprotein translocase subunit SecB
D RT0575 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D RT0123 secE; preprotein translocase SecE subunit K03073 secE; preprotein translocase subunit SecE
D RT0022 secF; protein-export membrane protein secF K03074 secF; preprotein translocase subunit SecF
D RT0053 secG; protein-export membrane protein SecG K03075 secG; preprotein translocase subunit SecG
D RT0631 secY; preprotein translocase SecY subunit K03076 secY; preprotein translocase subunit SecY
D RT0164 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D RT0762 ftsY; cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor
D RT0574 conserved hypothetical protein K03210 yajC; preprotein translocase subunit YajC
D RT0082 yidC; 60 kDa inner membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D RT0734 tatA; TatA/E-like Sec-independent protein translocase protein K03116 tatA; sec-independent protein translocase protein TatA
D RT0769 tatC; Sec-independent protein translocase protein TatC K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:rty02042]
D RT0697 conserved hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
C 02022 Two-component system [BR:rty02022]
D RT0412 envZ; osmolarity sensor protein EnvZ K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D RT0413 ompR; response regulator protein OmpR K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D RT0603 ntrY; nitrogen regulation protein NtrY K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
D RT0550 ntrX; nitrogen assimilation regulatory protein NtrX K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX
D RT0221 histidine kinase sensor protein K07716 pleC; two-component system, cell cycle sensor histidine kinase PleC [EC:2.7.13.3]
D RT0229 response regulator protein K02488 pleD; two-component system, cell cycle response regulator [EC:2.7.7.65]
D RT0061 czcR; transcriptional activator protein CzcR K13584 ctrA; two-component system, cell cycle response regulator CtrA
C 02035 Bacterial motility proteins
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:rty04812]
D RT0755 mreB; rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D RT0658 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D RT0243 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D RT0074 parA; chromosome partitioning protein ParA (Soj protein) K03496 parA; chromosome partitioning protein
D RT0132 conserved hypothetical protein K03496 parA; chromosome partitioning protein
D RT0073 parB; chromosome partitioning protein ParB (Spo0J protein) K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:rty04147]
D RT0828 htpG; heat shock protein HtpG K04079 HSP90A; molecular chaperone HtpG
D RT0318 tdpX1; thioredoxin peroxidase I K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24]
D RT0617 groEL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D RT0176 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D RT0653 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D RT0307 pkcI; protein kinase C inhibitor 1 K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D RT0722 fadA; 3-ketoacyl-CoA thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D RT0630 adk; Adenylic kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D RT0482 conserved hypothetical protein K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D RT0528 hemB; Aminolevulinate dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D RT0447 pdhD1; Diaphorase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D RT0792 pdhD2; Diaphorase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
C 02048 Prokaryotic defense system [BR:rty02048]
D RT0658 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D RT0755 mreB; rod shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D RT0065 parC; DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D RT0219 parE; DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D RT0316 gltX1; Glutamic acid translase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RT0614 gltX2; Glutamic acid translase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RT0587 conserved hypothetical protein K09159 cptB; antitoxin CptB
D RT0473 iscS1; cysteine desulfurase protein IscS/NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RT0474 iscS2; cysteine desulfurase protein IscS/NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules
C 01504 Antimicrobial resistance genes [BR:rty01504]
D RT0216 tolC; outer membrane protein TolC precursor K12340 tolC; outer membrane protein
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:rty03100]
D RT0506 tRNA-Ala; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RT0562 tRNA-Ala; tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D RT0826 tRNA-Arg; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RT0467 tRNA-Arg; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RT0545 tRNA-Arg; tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D RT0267 tRNA-Asn; tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D RT0504 tRNA-Asp; tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D RT0349 tRNA-Cys; tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D RT0468 tRNA-Gln; tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D RT0016 tRNA-Glu; tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D RT0573 tRNA-Gly; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RT0654 tRNA-Gly; tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D RT0690 tRNA-His; tRNA-His K14226 tRNA-His; tRNA His
D RT0370 tRNA-Ile; tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D RT0663 tRNA-Leu; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RT0864 tRNA-Leu; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RT0571 tRNA-Leu; tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D RT0369 tRNA-Lys; tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D RT0227 tRNA-Met; tRNA-Met K14230 tRNA-Met; tRNA Met
D RT0036 tRNA-fMet; tRNA-Met K14230 tRNA-Met; tRNA Met
D RT0757 tRNA-Met; tRNA-Met K14230 tRNA-Met; tRNA Met
D RT0009 tRNA-Phe; tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D RT0801 tRNA-Pro; tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D RT0454 tRNA-Ser; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RT0721 tRNA-Ser; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RT0440 tRNA-Ser; tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D RT0149 tRNA-Thr; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RT0868 tRNA-Thr; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RT0054 tRNA-Thr; tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D RT0122 tRNA-Trp; tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D RT0655 tRNA-Tyr; tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D RT0510 tRNA-Val; tRNA-Val K14237 tRNA-Val; tRNA Val
D RT0624 tRNA-Val; tRNA-Val K14237 tRNA-Val; tRNA Val
D RT0602 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D RT0200 rrl; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D RT0202 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D RT0854 srp; signal recognition particle RNA (4.5S RNA) K01983 ffs; SRP RNA
D RT0477 ssrA; tmRNA involved in trans translation (10SaRNA) K01978 rnpB; M1 RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D RT0354 lnt; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D RT0084 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D RT0001 conserved hypothetical protein K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33]
D RT0677 conserved hypothetical protein K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D RT0197 def; PDF K01462 PDF; peptide deformylase [EC:3.5.1.88]
D RT0436 tdcB; L-serine dehydratase K22589 thadh; threo-3-hydroxy-L-aspartate ammonia-lyase [EC:4.3.1.16]
D RT0565 prsA; protein export protein PrsA precursor K01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8]
C 99981 Carbohydrate metabolism
C 99982 Energy metabolism
D RT0189 fdxB; ferredoxin, 2Fe-2S (andrenodoxin-like) K04755 fdx; ferredoxin, 2Fe-2S
D RT0817 fdxA; ferredoxin K05524 fdxA; ferredoxin
D RT0472 iscU; iron-sulfur cofactor synthesis protein IscU/NifU K04488 iscU; nitrogen fixation protein NifU and related proteins
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
C 99986 Glycan metabolism
C 99987 Cofactor metabolism
D RT0674 ubiquinone biosynthesis protein K03688 ubiB; ubiquinone biosynthesis protein
D RT0605 conserved hypothetical protein K18587 COQ9; ubiquinone biosynthesis protein COQ9
D RT0158 conserved hypothetical protein K18588 COQ10; coenzyme Q-binding protein COQ10
C 99988 Secondary metabolism
C 99999 Others
D RT0729 probable esterase K06999 K06999; phospholipase/carboxylesterase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D RT0662 cspA; cold shock protein CspA K03704 cspA; cold shock protein
C 99974 Translation
C 99975 Protein processing
D RT0830 tig; FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) K03545 tig; trigger factor
D RT0416 smpB; tmRNA-binding protein SmpB K03664 smpB; SsrA-binding protein
C 99976 Replication and repair
D RT0684 rmuC; DNA recombination protein RmuC K09760 rmuC; DNA recombination protein RmuC
C 99979 Viral proteins
C 99998 Others
D RT0857 conserved hypothetical protein K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D RT0297 AtrC1-like cationic amino acid transporter protein K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D RT0470 potE; putrescine-ornithine antiporter K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D RT0161 acrD; acriflavin resistance protein D K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
D RT0079 tlcA; ADP/ATP carrier protein 1 K03301 TC.AAA; ATP:ADP antiporter, AAA family
D RT0486 tlcD; ADP/ATP carrier protein 4 K03301 TC.AAA; ATP:ADP antiporter, AAA family
D RT0724 tlcE; ADP/ATP carrier protein 5 K03301 TC.AAA; ATP:ADP antiporter, AAA family
C 99978 Cell growth
D RT0380 ispA; intracellular septation protein A K06190 ispZ; intracellular septation protein
C 99993 Cell motility
C 99995 Signaling proteins
D RT0254 typA; GTP-binding protein TypA (tyrosine phosphorylated protein A) K06207 typA; GTP-binding protein
C 99992 Structural proteins
D RT0044 vacJ; lipoprotein precursor K04754 mlaA; phospholipid-binding lipoprotein MlaA
D RT0057 OmpW-like outer membrane protein K07275 ompW; outer membrane protein
D RT0336 asmA; outer membrane assembly protein AsmA K07289 asmA; AsmA protein
D RT0577 ccmE; cytochrome c-type biogenesis protein CcmE K02197 ccmE; cytochrome c-type biogenesis protein CcmE
C 99994 Others
D RT0774 terC; tellurium resistance protein K05794 terC; tellurite resistance protein TerC
D RT0168 cutA; probable periplasmic divalent cation tolerance protein CutA K03926 cutA; periplasmic divalent cation tolerance protein
D RT0313 cyaY; CyaY protein K06202 cyaY; iron-sulfur cluster assembly protein CyaY
B
B 09194 Poorly characterized
C 99996 General function prediction only
D RT0522 conserved hypothetical protein K07001 K07001; NTE family protein
D RT0069 iscA1; iron-binding protein IscA/HesB K15724 erpA; iron-sulfur cluster insertion protein
D RT0483 conserved hypothetical protein K07058 K07058; membrane protein
D RT0114 conserved hypothetical protein K07146 K07146; UPF0176 protein
C 99997 Function unknown
D RT0218 rickettsial conserved hypothetical protein K06867 K06867; uncharacterized protein
D RT0333 possible hydrolase K06889 K06889; uncharacterized protein
D RT0136 conserved hypothetical protein (integral membrane protein) K06890 K06890; uncharacterized protein
D RT0458 conserved hypothetical protein K07018 K07018; uncharacterized protein
D RT0187 conserved hypothetical protein K07080 K07080; uncharacterized protein
D RT0341 conserved hypothetical protein K08998 K08998; uncharacterized protein
D RT0827 conserved hypothetical protein K09131 K09131; uncharacterized protein
D RT0160 rickettsial conserved hypothetical protein K09779 K09779; uncharacterized protein
D RT0714 rickettsial conserved hypothetical protein K09985 K09985; uncharacterized protein
D RT0059 conserved hypothetical protein K09987 K09987; uncharacterized protein
D RT0217 conserved hypothetical protein K09991 K09991; uncharacterized protein
D RT0109 conserved hypothetical protein K07276 K07276; uncharacterized protein
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: May 6, 2024