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Transfer RNA Biogenesis - Rickettsia typhi Wilmington
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AEukaryotic type
B 5'processing factors
C Ribonucrease P
B 3'processing and CCA adding factors
C 3'processing factors
C CCA adding factors
B tRNA spricing factors
C tRNA splicing endonuclease complex
C tRNA splicing ligase complex
C Other tRNA splicing factors
B tRNA transport factors
C tRNA export factors
C tRNA import factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D RT0316 gltX1; Glutamic acid translase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RT0614 gltX2; Glutamic acid translase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RT0372 proS; Proline translase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D RT0606 ileS; Isoleucine translase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D RT0407 leuS; Leucine translase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RT0678 metS; MetRS K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D RT0067 argS; Arginine translase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RT0134 aspS; Aspartic acid translase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
C Other AARSs
D RT0845 alaS; Alanine translase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D RT0212 thrS; Threonine translase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D RT0770 serS; SerRS K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D RT0051 cysS; Cysteine translase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D RT0682 valS; Valine translase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D RT0298 hisS; Histidine translase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D RT0403 pheS; Phenylalanine translase K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D RT0404 pheT; Phenylalanine translase K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D RT0544 tyrS; L-tyrosine-tRNATyr ligase (AMP-forming) K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RT0455 trpS; L-tryptophan-tRNATrp ligase (AMP-forming) K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C Trans-editing factors
C AARS associated factors
D RT0307 pkcI; protein kinase C inhibitor 1 K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
B tRNA modification factors
C Deaminases
C Dihydorouridine synthases
C Methylthiotransferase
C Methyltransferases
C Psudouridine synthases
D RT0846 truA; Pseudouridine synthase K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D RT0487 truB; Pseudouridine synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
C Thiolation factors
D RT0473 iscS1; cysteine desulfurase protein IscS/NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RT0474 iscS2; cysteine desulfurase protein IscS/NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C KEOPS/EKC complex
C Elongator complex
C Elongator related proteins
C Other tRNA modification factors
D RT0837 conserved hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D RT0495 miaA; IPP transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D RT0745 thdF; thiophene and furan oxidation protein; tRNA modification GTPase K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D RT0076 gidA; glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
B tRNA degradation factors
C TRAMP complex
C Rapid tRNA decay (RTD) pathway factors
D RT0288 cysQ; 3prime(2prime),5prime-bisphosphonucleoside 3prime(2prime)-phosphohydrolase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
C Other tRNA degradation factors
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AProkaryotic type
B 5'processing factors
C Ribonucrease P
D RT0599 rnpA; ribonuclease P K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D RT0477 ssrA; tmRNA involved in trans translation (10SaRNA) K01978 rnpB; M1 RNA
B 3'processing and CCA adding factors
C 3'processing factors
D RT0619 rph; Phosphate-dependent exonuclease K00989 rph; ribonuclease PH [EC:2.7.7.56]
D RT0449 rnd2; ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5]
D RT0408 rnd1; ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5]
C CCA adding factors
B tRNA spricing factors
C tRNA splicing endonucleases
C tRNA splicing ligases
C Other tRNA splicing factors
B tRNA transport factors
C tRNA export factors
D RT0072 ABC transporter ATP-binding protein K06020 ettA; energy-dependent translational throttle protein EttA
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D RT0407 leuS; Leucine translase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D RT0359 lysS; Lysine translase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6]
D RT0372 proS; Proline translase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
C Other AARSs
D RT0544 tyrS; L-tyrosine-tRNATyr ligase (AMP-forming) K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D RT0455 trpS; L-tryptophan-tRNATrp ligase (AMP-forming) K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D RT0212 thrS; Threonine translase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D RT0606 ileS; Isoleucine translase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D RT0845 alaS; Alanine translase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D RT0682 valS; Valine translase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D RT0678 metS; MetRS K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D RT0770 serS; SerRS K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D RT0134 aspS; Aspartic acid translase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D RT0839 glyQ; Glycyl translase K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D RT0838 glyS; Glycyl translase K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D RT0051 cysS; Cysteine translase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D RT0316 gltX1; Glutamic acid translase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RT0614 gltX2; Glutamic acid translase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D RT0067 argS; Arginine translase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D RT0403 pheS; Phenylalanine translase K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D RT0404 pheT; Phenylalanine translase K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D RT0298 hisS; Histidine translase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
C Trans-editing factors
B tRNA modification factors
C Deaminases
D RT0819 Cytosine aminohydrolase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
C Dihydorouridine synthases
D RT0010 NifR3-like protein K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
C Methylthiotransferases
D RT0795 miaB2; tRNA-methylthiotransferase (MiaB protein) K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D RT0402 miaB1; tRNA-methylthiotransferase (MiaB protein) K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5]
C Methyltransferases
D RT0025 trmD; tRNA (guanine-N(1)-)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D RT0745 thdF; thiophene and furan oxidation protein; tRNA modification GTPase K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
C Psudouridine synthases
D RT0846 truA; Pseudouridine synthase K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D RT0487 truB; Pseudouridine synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
C Thiolation factors
D RT0296 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D RT0471 iscA2; iron-binding protein IscA/HesB K13628 iscA; iron-sulfur cluster assembly protein
D RT0473 iscS1; cysteine desulfurase protein IscS/NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RT0474 iscS2; cysteine desulfurase protein IscS/NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D RT0451 conserved hypothetical protein K06980 ygfZ; tRNA-modifying protein YgfZ
C KEOPS/EKC complex
C Other tRNA modification factors
D RT0076 gidA; glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D RT0495 miaA; IPP transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D RT0204 queA; S-adenosylmethionine tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D RT0689 exsB; trans-regulatory protein ExsB K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D RT0169 6-pyruvoyl tetrahydrobiopterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D RT0595 conserved hypothetical protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D RT0060 conserved hypothetical protein K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D RT0840 conserved hypothetical protein K09765 queH; epoxyqueuosine reductase [EC:1.17.99.6]
D RT0707 tgt; Guanine insertion enzyme K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D RT0088 mesJ; probable cell cycle ATPase MesJ K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D RT0537 conserved hypothetical protein K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D RT0837 conserved hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D RT0093 gcp; Glycoprotease K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D RT0012 conserved hypothetical protein K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
B tRNA degradation factors
C RT0489 pnp; Polynucleotide phosphorylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: February 29, 2024