+E Transcription factors KO
#
Transcription Factors - Staphylococcus aureus subsp. aureus JH9 (MRSA/VISA)
%
!
AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
#
AProkaryotic type
B Helix-turn-helix
C AraC family
C LysR family
C DeoR family
D SaurJH9_2227 transcriptional regulator, DeoR family K02530 lacR; DeoR family transcriptional regulator, lactose phosphotransferase system repressor
D SaurJH9_0722 transcriptional regulator, DeoR family K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D SaurJH9_1622 CBS domain containing protein K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator
C LacI family
D SaurJH9_1791 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D SaurJH9_0256 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D SaurJH9_2079 transcriptional regulator, LacI family K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
C GntR family
D SaurJH9_0497 transcriptional regulator, GntR family K03486 treR2; GntR family transcriptional regulator, trehalose operon transcriptional repressor
D SaurJH9_0249 transcriptional regulator, GntR family K03489 yydK; GntR family transcriptional regulator, transcriptional regulator of bglA
D SaurJH9_1337 transcriptional regulator, GntR family K03710 K03710; GntR family transcriptional regulator
D SaurJH9_0540 transcriptional regulator, GntR family K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D SaurJH9_0095 transcriptional regulator, GntR family K18907 norG; GntR family transcriptional regulator, regulator for abcA and norABC
D SaurJH9_2530 transcriptional regulator, GntR family K11476 gntR; GntR family transcriptional regulator, gluconate operon transcriptional repressor
C TetR/AcrR family
D SaurJH9_2689 transcriptional regulator, TetR family K21453 icaR; TetR/AcrR family transcriptional regulator, biofilm operon repressor
C Lrp/AsnC family
C LuxR family
C MarR family
D SaurJH9_2543 transcriptional regulator, MarR family K15973 mhqR; MarR family transcriptional regulator, 2-MHQ and catechol-resistance regulon repressor
D SaurJH9_0710 transcriptional regulator, MarR family K18906 mgrA; MarR family transcriptional regulator, multiple gene regulator MgrA
D SaurJH9_0382 transcriptional regulator, MarR family K18909 mepR; MarR family transcriptional regulator, repressor for mepA
D SaurJH9_1817 staphylococcal accessory regulator family K20338 rot; MarR family transcriptional regulator, global regulator for virulence
D SaurJH9_2381 transcriptional regulator, MarR family K21454 tcaR; MarR family transcriptional regulator, teicoplanin-associated locus regulator
D SaurJH9_2410 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D SaurJH9_1367 putative transcriptional regulator, MerR family K03713 glnR; MerR family transcriptional regulator, glutamine synthetase repressor
D SaurJH9_2231 putative transcriptional regulator, MerR family K21745 adhR; MerR family transcriptional regulator, aldehyde-responsive regulator
C Fur family
D SaurJH9_1555 ferric uptake regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D SaurJH9_1612 zinc uptake regulator, Fur family K02076 zurR; Fur family transcriptional regulator, zinc uptake regulator
D SaurJH9_1915 ferric uptake regulator, Fur family K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
C IclR family
C CRP/FNR family
D SaurJH9_2655 cyclic nucleotide-binding protein K21828 arcR; CRP/FNR family transcriptional regulator, arginine deiminase pathway regulator
C Rrf2 family
D SaurJH9_1684 transcriptional regulator, BadM/Rrf2 family K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor
C ArsR family
D SaurJH9_1825 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D SaurJH9_2752 transcriptional regulator, ArsR family K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
D SaurJH9_2181 transcriptional regulator, ArsR family K22043 czrA; ArsR family transcriptional regulator, zinc-responsive transcriptional repressor
C XRE family
C PadR family
D SaurJH9_2716 transcriptional regulator, PadR family K10947 K10947; PadR family transcriptional regulator
C Other families
D SaurJH9_0657 iron dependent repressor K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D SaurJH9_2349 transcriptional regulator K03481 glvR; RpiR family transcriptional regulator, glv operon transcriptional regulator
D SaurJH9_2747 transcriptional repressor, CopY family K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D SaurJH9_0031 transcriptional repressor, CopY family K02546 mecI; BlaI family transcriptional regulator, methicillin resistance regulatory protein
D SaurJH9_1515 biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D SaurJH9_0310 transcriptional regulator, XRE family K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D SaurJH9_2636 transcriptional regulators-like protein K22109 gbsR; HTH-type transcriptional regulator, glycine betaine synthesis regulator
D SaurJH9_0517 purine operon repressor, PurR K09685 purR; HTH-type transcriptional regulator, purine operon repressor
D SaurJH9_2083 CoA-binding domain protein K01926 rex; redox-sensing transcriptional repressor
D SaurJH9_1315 GTP-sensing transcriptional pleiotropic repressor CodY K03706 codY; transcriptional pleiotropic repressor
D SaurJH9_0189 transcriptional regulator K07729 K07729; putative transcriptional regulator
D SaurJH9_0397 transcriptional regulator, XRE family K07729 K07729; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
D SaurJH9_2106 hypothetical protein K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI
C Other families
B Other transcription factors
C BglG family
D SaurJH9_1419 transcriptional antiterminator, BglG K03480 glcT; transcriptional antiterminator
D SaurJH9_2189 transcriptional antiterminator, BglG K03483 mtlR; mannitol operon transcriptional activator
D SaurJH9_2664 transcriptional antiterminator, BglG K02538 manR; mannose operon transcriptional activator
C Others
D SaurJH9_2124 protein of unknown function DUF156 K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D SaurJH9_0408 chromosome segregation DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D SaurJH9_2731 Effector of nucleoid occlusion Noc K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D SaurJH9_0111 ParB domain protein nuclease K23371 sbnI; L-serine kinase (ATP) / ParB family transcriptional regulator, heme-responsive regulator [EC:2.7.1.225]
D SaurJH9_1357 glycerol-3-phosphate responsive antiterminator K02443 glpP; glycerol uptake operon antiterminator
D SaurJH9_1579 transcriptional regulator, ArgR family K03402 argR; transcriptional regulator of arginine metabolism
D SaurJH9_1640 heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D SaurJH9_2131 transcriptional activator, TenA family K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D SaurJH9_0544 transcriptional repressor, CtsR K03708 ctsR; transcriptional regulator of stress and heat shock response
D SaurJH9_0796 transcriptional regulator, DeoR family K05311 cggR; central glycolytic genes regulator
D SaurJH9_1257 Uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D SaurJH9_1743 ATP-cone domain protein K07738 nrdR; transcriptional repressor NrdR
D SaurJH9_1084 ComK family protein K02250 comK; competence protein ComK
D SaurJH9_1237 MraZ protein K03925 mraZ; transcriptional regulator MraZ
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 5, 2024
#
Classification taken and modified from TRANSFAC 7.0