+F Repair protein KO
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DNA Repair and Recombination Proteins - Streptococcus agalactiae NEM316 (serotype III)
%
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D gbs1618 Unknown K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E ung Uracil DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E gbs1760 Unknown K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E gbs0515 Unknown K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D gbs1269 Unknown K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D gbs1514 Unknown K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D gbs0534 Unknown K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D gbs1960 Unknown K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D gbs0108 Unknown K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D gbs1618 Unknown K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E ung Uracil DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E gbs1760 Unknown K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E gbs2049 unknown K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E gbs1554 Unknown K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E gbs0515 Unknown K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E gbs1616 Unknown K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
E gbs1280 Unknown K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E gbs0868 Unknown K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E polA DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E uvrA excinuclease ABC (subunit A) K03701 uvrA; excinuclease ABC subunit A
E UvrB excinuclease ABC chain B K03702 uvrB; excinuclease ABC subunit B
E uvrC excinuclease ABC (subunit C) K03703 uvrC; excinuclease ABC subunit C
E gbs1209 Unknown K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E gbs1341 unknown K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E polA DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E gbs0868 Unknown K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F rpoB RNA polymerase beta-subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F rpoC RNA polymerase beta-subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F rpoA RNA polymerase (alpha subunit) K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F gbs0105 Unknown K03048 rpoE; DNA-directed RNA polymerase subunit delta
F gbs0302 unknown K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F gbs0008 Unknown K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E mutS DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
E gbs1764 Unknown K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
E mutL Unknown K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E gbs0542 Unknown K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E gbs0543 Unknown K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E dnaE DNA polymerase III (alpha subunit) K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E polC DNA polymerase III (alpha subunit) K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
E dnaN beta subunit of DNA polymerase III K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E gbs0807 Unknown K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E gbs1625 Unknown K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E gbs1794 Unknown K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E gbs1312 Unknown K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E gbs0846 Unknown K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E gbs0868 Unknown K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E gbs1209 Unknown K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E gbs1341 unknown K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E gbs0178 Unknown K03111 ssb; single-strand DNA-binding protein
E gbs1758 Unknown K03111 ssb; single-strand DNA-binding protein
E gbs0394 unknown K03111 ssb; single-strand DNA-binding protein
E gbs0724 Unknown K03111 ssb; single-strand DNA-binding protein
E gbs0985 unknown K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E gbs1769 Unknown K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E recA recombination protein RecA K03553 recA; recombination protein RecA
E ruvA Unknown K03550 ruvA; holliday junction DNA helicase RuvA
E ruvB unknown K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E priA primosomal replication factor Y (primosomal protein N') K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D RecFOR pathway proteins
E recA recombination protein RecA K03553 recA; recombination protein RecA
E gbs0109 unknown K04485 radA; DNA repair protein RadA/Sms
E recF Unknown K03629 recF; DNA replication and repair protein RecF
E recG Unknown K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E gbs1280 Unknown K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E gbs0019 Unknown K03584 recO; DNA repair protein RecO (recombination protein O)
E gbs0786 Unknown K06187 recR; recombination protein RecR
E gbs0547 Unknown K03631 recN; DNA repair protein RecN (Recombination protein N)
E gbs0289 unknown K03700 recU; recombination protein U
E ruvA Unknown K03550 ruvA; holliday junction DNA helicase RuvA
E ruvB unknown K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D AddAB pathway proteins
E gbs0891 unknown K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
E gbs0890 unknown K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D Other HR factor
E gbs0912 unknown K15342 cas1; CRISP-associated protein Cas1
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F gyrA DNA gyrase A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F gyrB DNA gyrase, subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F gbs1040 Unknown K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F gbs0551 HU like DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F gbs1280 Unknown K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F gbs0019 Unknown K03584 recO; DNA repair protein RecO (recombination protein O)
F gbs0786 Unknown K06187 recR; recombination protein RecR
F gbs0868 Unknown K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
E Supressor
F uvrA excinuclease ABC (subunit A) K03701 uvrA; excinuclease ABC subunit A
F UvrB excinuclease ABC chain B K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D gbs1771 Unknown K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
C Other SOS response factors
D recA recombination protein RecA K03553 recA; recombination protein RecA
D gbs1221 Unknown K01356 lexA; repressor LexA [EC:3.4.21.88]
D gbs0547 Unknown K03631 recN; DNA repair protein RecN (Recombination protein N)
D gbs0178 Unknown K03111 ssb; single-strand DNA-binding protein
D gbs1758 Unknown K03111 ssb; single-strand DNA-binding protein
D gbs0394 unknown K03111 ssb; single-strand DNA-binding protein
D gbs0724 Unknown K03111 ssb; single-strand DNA-binding protein
D gbs0985 unknown K03111 ssb; single-strand DNA-binding protein
D gbs0447 Unknown K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D gbs0570 Unknown K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
C Modulation of nucleotide pools
D gbs1269 Unknown K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D gbs1514 Unknown K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D gbs0534 Unknown K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D gbs1960 Unknown K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D gbs0108 Unknown K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D gbs0837 Unknown K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D gbs0455 Unknown K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D gbs0453 unknown K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D gbs0836 Unknown K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
D gbs0582 Unknown K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024