+F Repair protein KO #

  DNA Repair and Recombination Proteins - Streptococcus agalactiae NEM316 (serotype III)

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D gbs1618 Unknown K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E ung Uracil DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E gbs1760 Unknown K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E gbs0515 Unknown K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D gbs1269 Unknown K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D gbs1514 Unknown K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D gbs0534 Unknown K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D gbs1960 Unknown K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D gbs0108 Unknown K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D gbs1618 Unknown K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E ung Uracil DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E gbs1760 Unknown K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E gbs2049 unknown K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E gbs1554 Unknown K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E gbs0515 Unknown K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E gbs1616 Unknown K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E gbs1280 Unknown K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E gbs0868 Unknown K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E polA DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E uvrA excinuclease ABC (subunit A) K03701 uvrA; excinuclease ABC subunit A E UvrB excinuclease ABC chain B K03702 uvrB; excinuclease ABC subunit B E uvrC excinuclease ABC (subunit C) K03703 uvrC; excinuclease ABC subunit C E gbs1209 Unknown K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E gbs1341 unknown K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E polA DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E gbs0868 Unknown K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F rpoB RNA polymerase beta-subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F rpoC RNA polymerase beta-subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F rpoA RNA polymerase (alpha subunit) K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F gbs0105 Unknown K03048 rpoE; DNA-directed RNA polymerase subunit delta F gbs0302 unknown K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F gbs0008 Unknown K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E mutS DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E gbs1764 Unknown K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E mutL Unknown K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E gbs0542 Unknown K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E gbs0543 Unknown K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E dnaE DNA polymerase III (alpha subunit) K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E polC DNA polymerase III (alpha subunit) K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E dnaN beta subunit of DNA polymerase III K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E gbs0807 Unknown K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E gbs1625 Unknown K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E gbs1794 Unknown K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E gbs1312 Unknown K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E gbs0846 Unknown K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E gbs0868 Unknown K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E gbs1209 Unknown K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E gbs1341 unknown K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E gbs0178 Unknown K03111 ssb; single-strand DNA-binding protein E gbs1758 Unknown K03111 ssb; single-strand DNA-binding protein E gbs0394 unknown K03111 ssb; single-strand DNA-binding protein E gbs0724 Unknown K03111 ssb; single-strand DNA-binding protein E gbs0985 unknown K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E gbs1769 Unknown K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E recA recombination protein RecA K03553 recA; recombination protein RecA E ruvA Unknown K03550 ruvA; holliday junction DNA helicase RuvA E ruvB unknown K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E priA primosomal replication factor Y (primosomal protein N') K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E recA recombination protein RecA K03553 recA; recombination protein RecA E gbs0109 unknown K04485 radA; DNA repair protein RadA/Sms E recF Unknown K03629 recF; DNA replication and repair protein RecF E recG Unknown K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E gbs1280 Unknown K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E gbs0019 Unknown K03584 recO; DNA repair protein RecO (recombination protein O) E gbs0786 Unknown K06187 recR; recombination protein RecR E gbs0547 Unknown K03631 recN; DNA repair protein RecN (Recombination protein N) E gbs0289 unknown K03700 recU; recombination protein U E ruvA Unknown K03550 ruvA; holliday junction DNA helicase RuvA E ruvB unknown K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D AddAB pathway proteins E gbs0891 unknown K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E gbs0890 unknown K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor E gbs0912 unknown K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F gyrA DNA gyrase A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F gyrB DNA gyrase, subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F gbs1040 Unknown K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F gbs0551 HU like DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F gbs1280 Unknown K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F gbs0019 Unknown K03584 recO; DNA repair protein RecO (recombination protein O) F gbs0786 Unknown K06187 recR; recombination protein RecR F gbs0868 Unknown K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F uvrA excinuclease ABC (subunit A) K03701 uvrA; excinuclease ABC subunit A F UvrB excinuclease ABC chain B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D gbs1771 Unknown K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D recA recombination protein RecA K03553 recA; recombination protein RecA D gbs1221 Unknown K01356 lexA; repressor LexA [EC:3.4.21.88] D gbs0547 Unknown K03631 recN; DNA repair protein RecN (Recombination protein N) D gbs0178 Unknown K03111 ssb; single-strand DNA-binding protein D gbs1758 Unknown K03111 ssb; single-strand DNA-binding protein D gbs0394 unknown K03111 ssb; single-strand DNA-binding protein D gbs0724 Unknown K03111 ssb; single-strand DNA-binding protein D gbs0985 unknown K03111 ssb; single-strand DNA-binding protein D gbs0447 Unknown K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D gbs0570 Unknown K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D gbs1269 Unknown K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D gbs1514 Unknown K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D gbs0534 Unknown K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D gbs1960 Unknown K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D gbs0108 Unknown K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D gbs0837 Unknown K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D gbs0455 Unknown K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D gbs0453 unknown K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D gbs0836 Unknown K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D gbs0582 Unknown K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024