+F Repair protein KO #

  DNA Repair and Recombination Proteins - Staphylococcus aureus subsp. aureus Mu50 (MRSA/VISA)

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D SAV2547 adaB; probable methylated DNA-protein cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D SAV0691 putative deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E SAV0581 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E SAV2344 putative 3-methyladenine DNA glycosylate K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E SAV1868 similar to A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E SAV1452 nth; endonuclease-like protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D SAV2490 similar to mutator protein mutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SAV1794 conserved hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SAV1974 dUTP pyrophosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D SAV2547 adaB; probable methylated DNA-protein cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D SAV0691 putative deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E SAV0581 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E SAV2344 putative 3-methyladenine DNA glycosylate K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E SAV1868 similar to A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E SAV1664 tag; DNA-3-methyladenine glycosidase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E SAV1689 similar to formamidopyrimidine-DNA glycosidase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E SAV1452 nth; endonuclease-like protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E SAV1557 probable endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E SAV1636 similar to single-strand DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E SAV1904 dnlJ; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E SAV1690 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E SAV0759 uvrA; exinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E SAV0758 uvrB; exinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E SAV1146 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E SAV1905 pcrA; ATP-depentend DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SAV0413 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SAV1690 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E SAV1904 dnlJ; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F SAV0542 rpoB; RNA polymerase beta chain K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F SAV0543 rpoC; RNA polymerase beta-prime chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F SAV2224 rpoA; DNA-directed RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F SAV2128 rpoE; probable DNA-directed RNA polymerase delta subunit K03048 rpoE; DNA-directed RNA polymerase subunit delta F SAV1210 probable DNA-directed RNA polymerase omega chain K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F SAV0503 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E SAV1295 mutS; DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS E SAV1144 mutS2; MutS-like protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E SAV1297 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E SAV1523 probable exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E SAV1522 probable exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E SAV1703 dnaE; DNA polymerase III, alpha chain K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E SAV1264 polC; DNA polymerase III alpha chain PolC-type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E SAV0002 dnaN; DNA polymerase III beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E SAV1587 conserved hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E SAV0484 holB; probable DNA polymerase III delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E SAV1894 DNA polymerase III, alpha chain PolC-type K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E SAV0478 dnaX; DNA polymerase III gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E SAV1904 dnlJ; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E SAV1905 pcrA; ATP-depentend DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SAV0413 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SAV0366 ssb; single-strand DNA-binding protein of phage phi PVL K03111 ssb; single-strand DNA-binding protein E SAV0864 single strand DNA binding protein K03111 ssb; single-strand DNA-binding protein E SAV1983 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein E SAV2096 similar to single strand DNA binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E SAV1619 similar to deoxyribonuclease K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E SAV1285 recA; RecA protein K03553 recA; recombination protein RecA E SAV1642 ruvA; holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA E SAV1641 ruvB; holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E SAV1212 priA; primosomal protein K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E SAV1346 similar to exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E SAV1345 similar to exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E SAV1285 recA; RecA protein K03553 recA; recombination protein RecA E SAV0526 radA; DNA repair protein homologue K04485 radA; DNA repair protein RadA/Sms E SAV0004 recF; DNA repair and genetic recombination protein K03629 recF; DNA replication and repair protein RecF E SAV1227 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E SAV1636 similar to single-strand DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E SAV1566 similar to DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E SAV0480 recR; recombination protein K06187 recR; recombination protein RecR E SAV1519 recN; DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) E SAV1449 recU; recombination protein U homolog K03700 recU; recombination protein U E SAV1642 ruvA; holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA E SAV1641 ruvB; holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D AddAB pathway proteins E SAV0967 similar to ATP-dependent nuclease subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E SAV0966 similar to ATP-dependent nuclease subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E SAV1346 similar to exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E SAV1345 similar to exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F SAV0006 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F SAV0005 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F SAV1250 DNA topoisomerase I topA homologue K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F SAV1473 hu; DNA-binding protein II K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F SAV1985 hypothetical protein K07455 recT; recombination protein RecT F SAV1636 similar to single-strand DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F SAV1566 similar to DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F SAV0480 recR; recombination protein K06187 recR; recombination protein RecR F SAV1904 dnlJ; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F SAV0721 recQ; probable DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F SAV1482 probable ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F SAV0759 uvrA; exinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F SAV0758 uvrB; exinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D SAV1895 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D SAV1364 DNA-damage repair protein K03502 umuC; DNA polymerase V C Other SOS response factors D SAV1285 recA; RecA protein K03553 recA; recombination protein RecA D SAV1339 lexA; SOS regulatory LexA protein K01356 lexA; repressor LexA [EC:3.4.21.88] D SAV1519 recN; DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) D SAV0366 ssb; single-strand DNA-binding protein of phage phi PVL K03111 ssb; single-strand DNA-binding protein D SAV0864 single strand DNA binding protein K03111 ssb; single-strand DNA-binding protein D SAV1983 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D SAV2096 similar to single strand DNA binding protein K03111 ssb; single-strand DNA-binding protein D SAV1873 regulatory protein recX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase D SAV1143 DNA-dependent DNA polymerase beta chain K02347 polX; DNA polymerase (family X) C DNA helicases D SAV1455 dinG; probable ATP-dependent DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D SAV2490 similar to mutator protein mutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SAV1794 conserved hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SAV1974 dUTP pyrophosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D SAV0731 nrdE; ribonuceloside diphosphate reductase major subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D SAV0732 nrdF; ribonucleoside-diphosphate reductase minor subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D SAV1704 conserved hypothetical protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024