+E Ribosome biogenesis KO
#
Ribosome Biogenesis - Saccharomyces cerevisiae (budding yeast)
%
!
AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
D YDL014W NOP1; rRNA methyltransferase NOP1 K14563 NOP1; rRNA 2'-O-methyltransferase fibrillarin [EC:2.1.1.-]
D YLR197W NOP56; snoRNP complex protein NOP56 K14564 NOP56; nucleolar protein 56
D YOR310C NOP58; RNA-processing protein NOP58 K14565 NOP58; nucleolar protein 58
D YEL026W SNU13; RNA binding protein SNU13 K12845 SNU13; U4/U6 small nuclear ribonucleoprotein SNU13
C Box H/ACA snoRNPs
D YLR175W CBF5; pseudouridine synthase CBF5 K11131 DKC1; H/ACA ribonucleoprotein complex subunit 4 [EC:5.4.99.-]
D YHR089C GAR1; H/ACA snoRNP pseudouridylase subunit GAR1 K11128 GAR1; H/ACA ribonucleoprotein complex subunit 1
D YDL208W NHP2; snoRNA-binding protein NHP2 K11129 NHP2; H/ACA ribonucleoprotein complex subunit 2
D YHR072W-A NOP10; snoRNP complex protein NOP10 K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3
D YNL124W NAF1; RNA-binding snoRNP assembly protein K14763 NAF1; H/ACA ribonucleoprotein complex non-core subunit NAF1
D YIL104C SHQ1; Hsp90 cochaperone SHQ1 K14764 SHQ1; protein SHQ1
B 90S particles
C U3 small nucleolar RNA-associated proteins
D YHR148W IMP3; snoRNA-binding rRNA-processing protein IMP3 K14560 IMP3; U3 small nucleolar ribonucleoprotein protein IMP3
D YNL075W IMP4; snoRNA-binding rRNA-processing protein IMP4 K14561 IMP4; U3 small nucleolar ribonucleoprotein protein IMP4
D YJR002W MPP10; rRNA-processing protein MPP10 K14559 MPP10; U3 small nucleolar RNA-associated protein MPP10
D YER127W LCP5; Lcp5p K14765 NGDN; U3 small nucleolar ribonucleoprotein protein LCP5
D YCL031C RRP7; Rrp7p K14545 RRP7; ribosomal RNA-processing protein 7
D YCR057C PWP2; snoRNA-binding rRNA-processing protein PWP2 K14558 PWP2; periodic tryptophan protein 2
D YDL148C NOP14; snoRNA-binding rRNA-processing protein NOP14 K14766 NOP14; nucleolar protein 14
D YDL153C SAS10; rRNA-processing protein SAS10 K14767 UTP3; U3 small nucleolar RNA-associated protein 3
D YDR324C UTP4; Utp4p K14548 UTP4; U3 small nucleolar RNA-associated protein 4
D YDR398W UTP5; Utp5p K14546 UTP5; U3 small nucleolar RNA-associated protein 5
D YDR449C UTP6; snoRNA-binding rRNA-processing protein UTP6 K14557 UTP6; U3 small nucleolar RNA-associated protein 6
D YER082C UTP7; Utp7p K14768 UTP7; U3 small nucleolar RNA-associated protein 7
D YGR128C UTP8; Utp8p K14547 UTP8; U3 small nucleolar RNA-associated protein 8
D YHR196W UTP9; Utp9p K14551 UTP9; U3 small nucleolar RNA-associated protein 9
D YJL109C UTP10; snoRNA-binding rRNA-processing protein UTP10 K14550 UTP10; U3 small nucleolar RNA-associated protein 10
D YKL099C UTP11; rRNA-processing protein UTP11 K14769 UTP11; U3 small nucleolar RNA-associated protein 11
D YLR129W DIP2; snoRNA-binding rRNA-processing protein DIP2 K14556 DIP2; U3 small nucleolar RNA-associated protein 12
D YLR222C UTP13; Utp13p K14555 UTP13; U3 small nucleolar RNA-associated protein 13
D YML093W UTP14; Utp14p K14567 UTP14; U3 small nucleolar RNA-associated protein 14
D YMR093W UTP15; snoRNA-binding rRNA-processing protein UTP15 K14549 UTP15; U3 small nucleolar RNA-associated protein 15
D YOR078W BUD21; Bud21p K14770 BUD21; U3 small nucleolar RNA-associated protein 16
D YPL126W NAN1; Nan1p K14552 NAN1; NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
D YJL069C UTP18; Utp18p K14553 UTP18; U3 small nucleolar RNA-associated protein 18
D YPR144C NOC4; ribosome biosynthesis protein NOC4 K14771 NOC4; U3 small nucleolar RNA-associated protein 19
D YBL004W UTP20; Utp20p K14772 UTP20; U3 small nucleolar RNA-associated protein 20
D YLR409C UTP21; rRNA-processing protein UTP21 K14554 UTP21; U3 small nucleolar RNA-associated protein 21
D YGR090W UTP22; rRNA-processing protein UTP22 K14544 UTP22; U3 small nucleolar RNA-associated protein 22
D YOR004W UTP23; rRNA-binding ribosome biosynthesis protein UTP23 K14773 UTP23; U3 small nucleolar RNA-associated protein 23
D YDR339C FCF1; rRNA-processing protein FCF1 K14566 UTP24; U3 small nucleolar RNA-associated protein 24
D YIL091C UTP25; rRNA-binding ribosome biosynthesis protein UTP25 K14774 UTP25; U3 small nucleolar RNA-associated protein 25
D YKR060W UTP30; Utp30p K14775 UTP30; ribosome biogenesis protein UTP30
C Helicases
D YJL033W HCA4; RNA-dependent ATPase HCA4 K14776 DDX10; ATP-dependent RNA helicase DDX10/DBP4 [EC:5.6.2.7]
D YMR290C HAS1; ATP-dependent RNA helicase HAS1 K13179 DDX18; ATP-dependent RNA helicase DDX18/HAS1 [EC:5.6.2.7]
D YHR065C RRP3; RNA-dependent ATPase RRP3 K14777 DDX47; ATP-dependent RNA helicase DDX47/RRP3 [EC:5.6.2.7]
D YHR169W DBP8; ATP-dependent RNA helicase DBP8 K14778 DDX49; ATP-dependent RNA helicase DDX49/DBP8 [EC:5.6.2.7]
D YGL171W ROK1; RNA-dependent ATPase ROK1 K14779 DDX52; ATP-dependent RNA helicase DDX52/ROK1 [EC:5.6.2.7]
D YGL120C PRP43; DEAH-box ATP-dependent RNA helicase PRP43 K12820 DHX15; pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:5.6.2.6]
D YMR128W ECM16; ATP-dependent RNA helicase ECM16 K14780 DHX37; ATP-dependent RNA helicase DHX37/DHR1 [EC:5.6.2.6]
D YKL078W DHR2; RNA helicase K14781 DHR2; ATP-dependent RNA helicase DHR2 [EC:5.6.2.6]
D YDR021W FAL1; ATP-dependent RNA helicase FAL1 K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
C GTPase
D YPL217C BMS1; GTPase BMS1 K14569 BMS1; ribosome biogenesis protein BMS1
C RNase
D YMR239C RNT1; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D YOL080C REX4; putative 3'-5' exonuclease K18327 REXO4; RNA exonuclease 4 [EC:3.1.-.-]
D YKL149C DBR1; RNA lariat debranching enzyme K18328 DBR1; lariat debranching enzyme [EC:3.1.-.-]
C Kinase
D YIL035C CKA1; casein kinase 2 catalytic subunit CKA1 K03097 CSNK2A; casein kinase II subunit alpha [EC:2.7.11.1]
D YOR061W CKA2; casein kinase 2 catalytic subunit CKA2 K03097 CSNK2A; casein kinase II subunit alpha [EC:2.7.11.1]
D YGL019W CKB1; casein kinase 2 regulatory subunit CKB1 K03115 CSNK2B; casein kinase II subunit beta
D YOR039W CKB2; casein kinase 2 regulatory subunit CKB2 K03115 CSNK2B; casein kinase II subunit beta
C Other 90S particles
D YDR299W BFR2; rRNA-processing protein BFR2 K14782 AATF; protein AATF/BFR2
D YHR052W CIC1; Cic1p K14783 CIC1; proteasome-interacting protein CIC1
D YLR003C CMS1; Cms1p K14784 CMS1; protein CMS1
D YLR186W EMG1; 18S rRNA pseudouridine methyltransferase K14568 EMG1; rRNA small subunit pseudouridine methyltransferase Nep1 [EC:2.1.1.260]
D YNR054C ESF2; RNA-binding ATPase activator ESF2 K14785 ESF2; ESF2/ABP1 family protein
D YNL308C KRI1; Kri1p K14786 KRI1; protein KRI1
D YCL059C KRR1; ribosome biosynthesis protein KRR1 K06961 KRR1; ribosomal RNA assembly protein
D YPR112C MRD1; RNA-binding ribosome biosynthesis protein MRD1 K14787 MRD1; multiple RNA-binding domain-containing protein 1
D YNL132W KRE33; ribosome biosynthesis protein KRE33 K14521 NAT10; N-acetyltransferase 10 [EC:2.3.1.-]
D YGR159C NSR1; Nsr1p K11294 NCL; nucleolin
D YGR145W ENP2; ribosome biosynthesis protein ENP2 K14788 NOL10; ribosome biogenesis protein ENP2
D YDL213C NOP6; Nop6p K14789 NOP6; nucleolar protein 6
D YJL010C NOP9; RNA-binding RNA processing protein NOP9 K14790 NOP9; nucleolar protein 9
D YGR280C PXR1; telomerase inhibitor K11135 PINX1; Pin2-interacting protein X1
D YLR196W PWP1; rRNA-processing protein PWP1 K14791 PWP1; periodic tryptophan protein 1
D YOL010W RCL1; rRNA-processing endoribonuclease K11108 RCL1; RNA 3'-terminal phosphate cyclase-like protein
D YMR229C RRP5; Rrp5p K14792 RRP5; rRNA biogenesis protein RRP5
D YPR137W RRP9; Rrp9p K14793 RRP9; ribosomal RNA-processing protein 9
D YPL012W RRP12; mRNA-binding protein RRP12 K14794 RRP12; ribosomal RNA-processing protein 12
D YOR287C RRP36; rRNA-processing protein RRP36 K14795 RRP36; ribosomal RNA-processing protein 36
D YMR269W TMA23; Tma23p K14796 TMA23; nucleolar protein TMA23
D YLL011W SOF1; rRNA-processing protein SOF1 K11806 DCAF13; DDB1- and CUL4-associated factor 13
B Pre-40S particles
C Kinases
D YPL204W HRR25; serine/threonine protein kinase HRR25 K14758 HRR25; casein kinase I homolog HRR25 [EC:2.7.11.1]
D YOR119C RIO1; protein kinase RIO1 K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D YNL207W RIO2; protein kinase RIO2 K07179 RIOK2; RIO kinase 2 [EC:2.7.11.1]
C Export and cytoplasmic maturation factors
D YPL266W DIM1; putative dimethyladenosine transferase K14191 DIM1; 18S rRNA (adenine1779-N6/adenine1780-N6)-dimethyltransferase [EC:2.1.1.183]
D YCR047C BUD23; 18S rRNA (guanine1575-N7)-methyltransferase K19306 BUD23; 18S rRNA (guanine1575-N7)-methyltransferase [EC:2.1.1.309]
D YBR247C ENP1; snoRNA-binding rRNA-processing protein ENP1 K14797 ENP1; essential nuclear protein 1
D YKL143W LTV1; Ltv1p K14798 LTV1; protein LTV1
D YOR056C NOB1; rRNA-binding endoribonuclease K11883 NOB1; RNA-binding protein NOB1
D YOR145C PNO1; Pno1p K11884 PNO1; RNA-binding protein PNO1
D YLR293C GSP1; Ran GTPase GSP1 K07936 RAN; GTP-binding nuclear protein Ran
D YOR185C GSP2; Ran GTPase GSP2 K07936 RAN; GTP-binding nuclear protein Ran
D YDL166C FAP7; nucleoside-triphosphatase K18532 AK6; adenylate kinase [EC:2.7.4.3]
D YDL060W TSR1; Tsr1p K14799 TSR1; pre-rRNA-processing protein TSR1
D YLR435W TSR2; Tsr2p K14800 TSR2; pre-rRNA-processing protein TSR2
D YOR006C TSR3; ribosome biogenesis protein TSR3 K09140 TSR3; rRNA small subunit aminocarboxypropyltransferase [EC:2.5.1.157]
D YOL022C TSR4; Tsr4p K14801 TSR4; pre-rRNA-processing protein TSR4
D YGR218W CRM1; exportin CRM1 K14290 XPO1; exportin-1
D YLR347C KAP95; karyopherin beta K14293 KPNB1; importin subunit beta-1
D YBR017C KAP104; Kap104p K18752 TNPO1; transportin-1
D YER110C KAP123; Kap123p K20221 IPO4; importin-4
D YMR308C PSE1; Pse1p K20222 IPO5; importin-5
D YJR132W NMD5; Nmd5p K20223 IPO7; importin-7
D YDR395W SXM1; Sxm1p K20223 IPO7; importin-7
D YGL241W KAP114; Kap114p K20224 IPO9; importin-9
C Other pre-40S particles
D YAL026C DRS2; aminophospholipid-translocating P4-type ATPase DRS2 K14802 DRS2; phospholipid-transporting ATPase [EC:7.6.2.1]
D YLR192C HCR1; translation initiation factor eIF3 core subunit J K03245 EIF3J; translation initiation factor 3 subunit J
D YBL056W PTC3; type 2C protein phosphatase PTC3 K14803 PTC2_3; protein phosphatase PTC2/3 [EC:3.1.3.16]
D YER089C PTC2; type 2C protein phosphatase PTC2 K14803 PTC2_3; protein phosphatase PTC2/3 [EC:3.1.3.16]
D YGR081C SLX9; Slx9p K14804 SLX9; ribosome biogenesis protein SLX9
D YDR091C RLI1; Fe-S cluster-binding ribosome biosynthesis protein K06174 ABCE1; ATP-binding cassette, sub-family E, member 1
B Pre-60S particles
C Helicases
D YNL112W DBP2; DEAD-box ATP-dependent RNA helicase DBP2 K12823 DDX5; ATP-dependent RNA helicase DDX5/DBP2 [EC:5.6.2.7]
D YMR290C HAS1; ATP-dependent RNA helicase HAS1 K13179 DDX18; ATP-dependent RNA helicase DDX18/HAS1 [EC:5.6.2.7]
D YBR142W MAK5; putative ATP-dependent RNA helicase K14805 DDX24; ATP-dependent RNA helicase DDX24/MAK5 [EC:5.6.2.7]
D YLL008W DRS1; putative ATP-dependent RNA helicase K13181 DDX27; ATP-dependent RNA helicase DDX27 [EC:5.6.2.7]
D YKR024C DBP7; putative ATP-dependent RNA helicase K14806 DDX31; ATP-dependent RNA helicase DDX31/DBP7 [EC:5.6.2.7]
D YNR038W DBP6; putative ATP-dependent RNA helicase DBP6 K14807 DDX51; ATP-dependent RNA helicase DDX51/DBP6 [EC:5.6.2.7]
D YDL031W DBP10; putative ATP-dependent RNA helicase DBP10 K14808 DDX54; ATP-dependent RNA helicase DDX54/DBP10 [EC:5.6.2.7]
D YFL002C SPB4; putative ATP-dependent RNA helicase SPB4 K14809 DDX55; ATP-dependent RNA helicase DDX55/SPB4 [EC:5.6.2.7]
D YLR276C DBP9; ATP-dependent DNA/RNA helicase K14810 DDX56; ATP-dependent RNA helicase DDX56/DBP9 [EC:5.6.2.7]
D YGL078C DBP3; RNA-dependent ATPase DBP3 K14811 DBP3; ATP-dependent RNA helicase DBP3 [EC:5.6.2.7]
D YJL050W MTR4; ATP-dependent RNA helicase MTR4 K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
C GTPases
D YER006W NUG1; RNA-binding GTPase NUG1 K14538 NUG1; nuclear GTP-binding protein
D YNR053C NOG2; putative GTPase NOG2 K14537 NUG2; nuclear GTP-binding protein
D YPL093W NOG1; putative GTPase NOG1 K06943 NOG1; nucleolar GTP-binding protein
D YGL099W LSG1; putative GTPase LSG1 K14539 LSG1; large subunit GTPase 1 [EC:3.6.1.-]
D YNL163C RIA1; GTPase RIA1 K14536 RIA1; ribosome assembly protein 1 [EC:3.6.5.-]
C RNases
D YMR285C NGL2; RNA exonuclease K14812 NGL2; RNA exonuclease NGL2 [EC:3.1.-.-]
D YLR059C REX2; Rex2p K13288 orn; oligoribonuclease [EC:3.1.-.-]
D YGR276C RNH70; Rnh70p K14570 REX1; RNA exonuclease [EC:3.1.-.-]
D YLR107W REX3; RNA exonuclease K14570 REX1; RNA exonuclease [EC:3.1.-.-]
D YGL173C XRN1; chromatin-binding exonuclease XRN1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
D YOR048C RAT1; ssRNA exonuclease RAT1 K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
D RNase MRP
E YNL221C POP1; ribonuclease P/MRP protein subunit POP1 K01164 POP1; ribonuclease P/MRP protein subunit POP1 [EC:3.1.26.5]
E YNL282W POP3; Pop3p K14522 POP3; ribonuclease P/MRP protein subunit POP3 [EC:3.1.26.5]
E YBR257W POP4; RNase P/RNase MRP complex subunit K03538 POP4; ribonuclease P protein subunit POP4 [EC:3.1.26.5]
E YAL033W POP5; RNA-binding protein POP5 K03537 POP5; ribonuclease P/MRP protein subunit POP5 [EC:3.1.26.5]
E YGR030C POP6; ribonuclease P/MRP protein subunit POP6 K14524 POP6; ribonuclease P/MRP protein subunit POP6 [EC:3.1.26.5]
E YBR167C POP7; ribonuclease P/MRP protein subunit POP7 K14526 POP7; ribonuclease P/MRP protein subunit POP7 [EC:3.1.26.5]
E YBL018C POP8; ribonuclease P K14528 POP8; ribonuclease P/MRP protein subunit POP8 [EC:3.1.26.5]
E YHR062C RPP1; RNA-binding RNA processing protein RPP1 K03539 RPP1; ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5]
E YLR145W RMP1; Rmp1p K14532 RMP1; ribonuclease MRP protein subunit RMP1
E YDR478W SNM1; Snm1p K14531 SNM1; ribonuclease MRP protein subunit SNM1
C Kinases
D YPL204W HRR25; serine/threonine protein kinase HRR25 K14758 HRR25; casein kinase I homolog HRR25 [EC:2.7.11.1]
D YLL035W GRC3; polynucleotide 5'-hydroxyl-kinase K06947 GRC3; polynucleotide 5'-hydroxyl-kinase GRC3/NOL9 [EC:2.7.1.-]
C Export and cytoplasmic maturation factors
D YER036C ARB1; ATP-binding cassette family ATPase ARB1 K06185 ABCF2; ATP-binding cassette, subfamily F, member 2
D YDR101C ARX1; putative hydrolase K14813 ARX1; metalloprotease ARX1 [EC:3.-.-.-]
D YJL122W ALB1; Alb1p K14814 ALB1; ribosome biogenesis protein ALB1
D YNL227C JJJ1; Jjj1p K09506 DNAJA5; DnaJ homolog subfamily A member 5
D YPR016C TIF6; translation initiation factor 6 K03264 EIF6; translation initiation factor 6
D YLL024C SSA2; Hsp70 family chaperone SSA2 K03283 HSPA1_6_8; heat shock 70kDa protein 1/6/8
D YAL005C SSA1; Hsp70 family ATPase SSA1 K03283 HSPA1_6_8; heat shock 70kDa protein 1/6/8
D YER103W SSA4; Hsp70 family chaperone SSA4 K03283 HSPA1_6_8; heat shock 70kDa protein 1/6/8
D YBL075C SSA3; Hsp70 family ATPase SSA3 K03283 HSPA1_6_8; heat shock 70kDa protein 1/6/8
D YNL209W SSB2; Hsp70 family ATPase SSB2 K03283 HSPA1_6_8; heat shock 70kDa protein 1/6/8
D YDL229W SSB1; Hsp70 family ATPase SSB1 K03283 HSPA1_6_8; heat shock 70kDa protein 1/6/8
D YKL009W MRT4; Mrt4p K14815 MRT4; mRNA turnover protein 4
D YKL186C MTR2; Mtr2p K14543 MTR2; mRNA transport regulator MTR2
D YHR170W NMD3; ribosome-binding protein NMD3 K07562 NMD3; 60S ribosomal export protein NMD3
D YPL169C MEX67; Mex67p K14284 NXF; nuclear RNA export factor
D YLR293C GSP1; Ran GTPase GSP1 K07936 RAN; GTP-binding nuclear protein Ran
D YOR185C GSP2; Ran GTPase GSP2 K07936 RAN; GTP-binding nuclear protein Ran
D YBR267W REI1; Rei1p K14816 REI1; pre-60S factor REI1
D YLR387C REH1; Reh1p K14816 REI1; pre-60S factor REI1
D YFR001W LOC1; Loc1p K14817 LOC1; 60S ribosomal subunit assembly/export protein LOC1
D YLR022C SDO1; guanine nucleotide exchange factor SDO1 K14574 SDO1; ribosome maturation protein SDO1
D YLR397C AFG2; AAA family ATPase AFG2 K14575 AFG2; AAA family ATPase
D YIR012W SQT1; Sqt1p K14818 SQT1; ribosome assembly protein SQT1
D YGR218W CRM1; exportin CRM1 K14290 XPO1; exportin-1
D YLR347C KAP95; karyopherin beta K14293 KPNB1; importin subunit beta-1
D YBR017C KAP104; Kap104p K18752 TNPO1; transportin-1
D YER110C KAP123; Kap123p K20221 IPO4; importin-4
D YMR308C PSE1; Pse1p K20222 IPO5; importin-5
D YJR132W NMD5; Nmd5p K20223 IPO7; importin-7
D YDR395W SXM1; Sxm1p K20223 IPO7; importin-7
D YGL241W KAP114; Kap114p K20224 IPO9; importin-9
D YIR026C YVH1; tyrosine protein phosphatase YVH1 K14819 DUSP12; dual specificity phosphatase 12 [EC:3.1.3.16 3.1.3.48]
C 5-FMC complex
D YHR085W IPI1; Ipi1p K14827 IPI1; pre-rRNA-processing protein IPI1
D YNL182C IPI3; chromatin-binding/pre-rRNA-processing protein IPI3 K14829 IPI3; pre-rRNA-processing protein IPI3
D YKR063C LAS1; rRNA-processing protein LAS1 K16912 LAS1; ribosomal biogenesis protein LAS1
C Ribosome quality control proteins
D YMR247C RKR1; ubiquitin-protein ligase RKR1 K22377 LTN1; E3 ubiquitin-protein ligase listerin [EC:2.3.2.27]
D YDR333C RQC1; Rqc1p K24970 TCF25; transcription factor 25
D YPL009C RQC2; Rqc2p K24971 NEMF; nuclear export mediator factor NEMF
D YDL126C CDC48; AAA family ATPase CDC48 K13525 VCP; transitional endoplasmic reticulum ATPase
D YBR170C NPL4; nuclear protein localization protein 4 K14015 NPLOC4; nuclear protein localization protein 4
D YGR048W UFD1; polyubiquitin-binding protein UFD1 K14016 UFD1; ubiquitin fusion degradation protein 1
D YDR049W VMS1; Vms1p K26089 ANKZF1; ankyrin repeat and zinc finger domain-containing protein 1
C Other pre-60S particles
D YOL077C BRX1; ribosome biogenesis protein BRX1 K14820 BRX1; ribosome biogenesis protein BRX1
D YLR074C BUD20; Bud20p K14821 BUD20; bud site selection protein 20
D YHR052W CIC1; Cic1p K14783 CIC1; proteasome-interacting protein CIC1
D YGL029W CGR1; Cgr1p K14822 CGR1; rRNA-processing protein CGR1
D YKL172W EBP2; Ebp2p K14823 EBP2; rRNA-processing protein EBP2
D YMR049C ERB1; Erb1p K14824 ERB1; ribosome biogenesis protein ERB1
D YAL007C ERP2; Erp2p K14825 TMED5; p24 family protein gamma-2
D YOR016C ERP4; Erp4p K14825 TMED5; p24 family protein gamma-2
D YLR449W FPR4; peptidylprolyl isomerase FPR4 K14826 FPR3_4; FK506-binding nuclear protein [EC:5.2.1.8]
D YML074C FPR3; peptidylprolyl isomerase FPR3 K14826 FPR3_4; FK506-binding nuclear protein [EC:5.2.1.8]
D YKL021C MAK11; Mak11p K14830 MAK11; protein MAK11
D YAL025C MAK16; ribosome biosynthesis protein MAK16 K14831 MAK16; protein MAK16
D YDR060W MAK21; RNA-binding ribosome biosynthesis protein MAK21 K14832 MAK21; ribosome biogenesis protein MAK21
D YLR106C REA1; AAA family ATPase midasin K14572 MDN1; midasin
D YPL211W NIP7; ribosome biosynthesis protein NIP7 K07565 NIP7; 60S ribosome subunit biogenesis protein NIP7
D YOR206W NOC2; mRNA-binding ribosome synthesis protein NOC2 K14833 NOC2; nucleolar complex protein 2
D YLR002C NOC3; Noc3p K14834 NOC3; nucleolar complex protein 3
D YNL061W NOP2; rRNA (cytosine-C5-)-methyltransferase NOP2 K14835 NOP2; 25S rRNA (cytosine2870-C5)-methyltransferase [EC:2.1.1.310]
D YPL043W NOP4; mRNA-binding ribosome biosynthesis protein NOP4 K14573 NOP4; nucleolar protein 4
D YOL144W NOP8; Nop8p K14836 NOP8; nucleolar protein 8
D YOL041C NOP12; Nop12p K14837 NOP12; nucleolar protein 12
D YNL110C NOP15; rRNA-binding ribosome biosynthesis protein NOP15 K14838 NOP15; nucleolar protein 15
D YER002W NOP16; Nop16p K14839 NOP16; nucleolar protein 16
D YPL146C NOP53; Nop53p K14840 NOP53; nucleolar protein 53
D YGL111W NSA1; ribosome biosynthesis protein NSA1 K14841 NSA1; ribosome biogenesis protein NSA1
D YER126C NSA2; rRNA-processing protein NSA2 K14842 NSA2; ribosome biogenesis protein NSA2
D YGR103W NOP7; mRNA-binding ribosome synthesis protein NOP7 K14843 PES1; pescadillo
D YDR496C PUF6; Puf6p K14844 PUF6; pumilio homology domain family member 6
D YLR196W PWP1; rRNA-processing protein PWP1 K14791 PWP1; periodic tryptophan protein 1
D YGL246C RAI1; decapping nuclease K14845 RAI1; RAT1-interacting protein
D YHR197W RIX1; Rix1p K14828 RIX1; pre-rRNA-processing protein RIX1
D YLL034C RIX7; putative AAA family ATPase RIX7 K14571 RIX7; ribosome biogenesis ATPase
D YHR088W RPF1; rRNA-binding ribosome biosynthesis protein RPF1 K14846 RPF1; ribosome production factor 1
D YKR081C RPF2; rRNA-binding ribosome biosynthesis protein RPF2 K14847 RPF2; ribosome production factor 2
D YMR131C RRB1; ribosome biosynthesis protein RRB1 K14848 RRB1; ribosome assembly protein RRB1
D YDR087C RRP1; Rrp1p K14849 RRP1; ribosomal RNA-processing protein 1
D YDR083W RRP8; 25S rRNA (adenine645-N1)-methyltransferase K14850 RRP8; ribosomal RNA-processing protein 8 [EC:2.1.1.287]
D YPL012W RRP12; mRNA-binding protein RRP12 K14794 RRP12; ribosomal RNA-processing protein 12
D YDR412W RRP17; Rrp17p K14851 RRP17; ribosomal RNA-processing protein 17
D YOR294W RRS1; Rrs1p K14852 RRS1; regulator of ribosome biosynthesis
D YPL193W RSA1; Rsa1p K14853 RSA1; ribosome assembly protein 1
D YLR221C RSA3; Rsa3p K14854 RSA3; ribosome assembly protein 3
D YCR072C RSA4; Rsa4p K14855 RSA4; ribosome assembly protein 4
D YGR245C SDA1; Sda1p K14856 SDA1; protein SDA1
D YCL054W SPB1; 27S pre-rRNA (guanosine2922-2'-O)-methyltransferase K14857 SPB1; AdoMet-dependent rRNA methyltransferase SPB1 [EC:2.1.1.-]
D YCR018C SRD1; Srd1p K14858 SRD1; pre-rRNA-processing protein SRD1
D YHR066W SSF1; rRNA-binding ribosome biosynthesis protein K14859 SSF1_2; ribosome biogenesis protein SSF1/2
D YDR312W SSF2; rRNA-binding ribosome biosynthesis protein K14859 SSF1_2; ribosome biogenesis protein SSF1/2
D YOR252W TMA16; Tma16p K14860 TMA16; translation machinery-associated protein 16
D YKL014C URB1; Urb1p K14861 URB1; nucleolar pre-ribosomal-associated protein 1
D YJR041C URB2; Urb2p K14862 URB2; nucleolar pre-ribosomal-associated protein 2
D YOR272W YTM1; Ytm1p K14863 WDR12; ribosome biogenesis protein
D YJR055W HIT1; Hit1p K23309 ZNHIT3; zinc finger HIT domain-containing protein 3
B Other ribosome biogenesis factors
C YDR361C BCP1; protein-transporting protein BCP1 K15262 BCP1; protein BCP1
C YCR087C-A uncharacterized protein K15263 LYER; cell growth-regulating nucleolar protein
C YNL022C RCM1; rRNA (cytosine-C5-)-methyltransferase RCM1 K15264 NSUN5; 25S rRNA (cytosine2278-C5)-methyltransferase [EC:2.1.1.311]
C YOR201C MRM1; Mrm1p K15507 MRM1; 21S rRNA (GM2251-2'-O)-methyltransferase [EC:2.1.1.-]
C YGL136C MRM2; 21S rRNA (uridine2791-2'-O) methyltransferase K15508 MRM2; 21S rRNA (uridine2791-2'-O)-methyltransferase [EC:2.1.1.168]
C YBR141C BMT2; 25S rRNA (adenine2142-N1)-methyltransferase K18849 BMT2; 25S rRNA (adenine2142-N1)-methyltransferase [EC:2.1.1.286]
C YIL096C BMT5; 25S rRNA (uracil2634-N3)-methyltransferase K19307 BMT5; 25S rRNA (uracil2634-N3)-methyltransferase [EC:2.1.1.313]
C YLR063W BMT6; 25S rRNA (uracil2843-N3)-methyltransferase K19308 BMT6; 25S rRNA (uracil2843-N3)-methyltransferase [EC:2.1.1.312]
C YMR097C MTG1; putative GTPase MTG1 K19828 MTG1; mitochondrial GTPase 1
C YHR168W MTG2; putative GTPase MTG2 K03979 obgE; GTPase [EC:3.6.5.-]
C YOR205C GEP3; Gep3p K19829 GEP3; genetic interactor of prohibitins 3, mitochondrial
C YLR165C PUS5; pseudouridine synthase PUS5 K15265 PUS5; 21S rRNA pseudouridine2819 synthase [EC:5.4.99.43]
C YMR228W MTF1; RNA polymerase specificity factor K15267 MTEF1; mitochondrial transcription factor 1
C YIL110W HPM1; protein-histidine N-methyltransferase K18803 HPM1; protein-histidine N-methyltransferase [EC:2.1.1.85]
C YDR198C RKM2; protein-lysine N-methyltransferase K27349 RKM2; ribosomal lysine N-methyltransferase 2 [EC:2.1.1.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
D YLR197W NOP56; snoRNP complex protein NOP56 K14564 NOP56; nucleolar protein 56
D YHL033C RPL8A; ribosomal 60S subunit protein L8A K02936 RP-L7Ae; large subunit ribosomal protein L7Ae
D YLL045C RPL8B; ribosomal 60S subunit protein L8B K02936 RP-L7Ae; large subunit ribosomal protein L7Ae
C Box H/ACA snoRNPs
D YLR175W CBF5; pseudouridine synthase CBF5 K11131 DKC1; H/ACA ribonucleoprotein complex subunit 4 [EC:5.4.99.-]
D YHR072W-A NOP10; snoRNP complex protein NOP10 K11130 NOP10; H/ACA ribonucleoprotein complex subunit 3
B rRNA transcription factors
B rRNA modification factors
C 16S rRNA modification factors
C 23S rRNA modification factors
B ribosomal protein modification factors
B rRNA processing factors
C YMR239C RNT1; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
B rRNA helicases
B GTPases
C YHR168W MTG2; putative GTPase MTG2 K03979 obgE; GTPase [EC:3.6.5.-]
B Other maturation factors
C YGL169W SUA5; threonylcarbamoyladenylate synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C YGR210C uncharacterized protein K06942 ychF; ribosome-binding ATPase
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
D YNCO0025W SNR17A; SNR17A K14483 SNORD3; small nucleolar RNA SNORD3
D YNCP0005C SNR17B; SNR17B K14483 SNORD3; small nucleolar RNA SNORD3
D YNCJ0003C SNR128; SNR128 K14865 SNORD14; small nucleolar RNA SNORD14
D YNCA0003W SNR18; SNR18 K14866 SNORD18; small nucleolar RNA SNORD18
D YNCM0026C SNR24; SNR24 K14867 SNORD24; small nucleolar RNA SNORD24
D YNCL0042C SNR55; SNR55 K14881 SNORD32_33; small nucleolar RNA SNORD32/33
D YNCO0015C SNR62; SNR62 K14888 SNORD34; small nucleolar RNA SNORD34
D YNCD0010C SNR47; SNR47 K14874 SNORD36; small nucleolar RNA SNORD36
D YNCL0041C SNR61; SNR61 K14887 SNORD38; small nucleolar RNA SNORD38
D YNCM0005C SNR54; SNR54 K14880 SNORD59; small nucleolar RNA SNORD59
D YNCE0020C SNR52; SNR52 K14878 SNR52; small nucleolar RNA SNR52
D YNCJ0004C SNR190; SNR190 K26461 SNR190; small nucleolar RNA SNR190
C SnoRNAs act as guides for 2'-O-ribose methylation
D YNCK0009W SNR38; SNR38 K14869 SNORD1; small nucleolar RNA SNORD1
D YNCG0015C SNR39B; SNR39B K14870 SNORD2; small nucleolar RNA SNORD2
D YNCP0014C SNR70; SNR70 K14896 SNORD11; small nucleolar RNA SNORD11
D YNCB0003W SNR56; SNR56 K14882 SNORD25; small nucleolar RNA SNORD25
D YNCM0015W SNR74; SNR74 K14900 SNORD27; small nucleolar RNA SNORD27
D YNCE0002W SNR67; SNR67 K14893 SNORD31; small nucleolar RNA SNORD31
D YNCN0014W SNR66; SNR66 K14892 SNORD42; small nucleolar RNA SNORD42
D YNCP0003W SNR59; SNR59 K14885 SNORD51; small nucleolar RNA SNORD51
D YNCG0014C SNR39; SNR39 K14885 SNORD51; small nucleolar RNA SNORD51
D YNCP0013C SNR51; SNR51 K14877 SNORD57; small nucleolar RNA SNORD57
D YNCM0012W SNR77; SNR77 K14903 SNORD65; small nucleolar RNA SNORD65
D YNCK0001W SNR64; SNR64 K14890 SNORD74; small nucleolar RNA SNORD74
D YNCJ0009C SNR60; SNR60 K14886 SNORD77_80; small nucleolar RNA SNORD77/80
D YNCD0030W SNR13; SNR13 K14868 SNR13; small nucleolar RNA SNR13
D YNCN0001W SNR40; SNR40 K14871 SNR40; small nucleolar RNA SNR40
D YNCP0015C SNR41; SNR41 K14872 SNR41; small nucleolar RNA SNR41
D YNCP0021W SNR45; SNR45 K14873 SNR45; small nucleolar RNA SNR45
D YNCG0026W SNR48; SNR48 K26462 SNR48; small nucleolar RNA SNR48
D YNCO0007W SNR50; SNR50 K14876 SNR50; small nucleolar RNA SNR50
D YNCL0043C SNR57; SNR57 K14883 SNR57; small nucleolar RNA SNR57
D YNCD0002C SNR63; SNR63 K26475 SNR63; small nucleolar RNA SNR63
D YNCC0011W SNR65; SNR65 K14891 SNR65; small nucleolar RNA SNR65
D YNCI0001W SNR68; SNR68 K14894 SNR68; small nucleolar RNA SNR68
D YNCK0013W SNR69; SNR69 K26476 SNR69; small nucleolar RNA SNR69
D YNCH0014W SNR71; SNR71 K14897 SNR71; small nucleolar RNA SNR71
D YNCM0017W SNR72; SNR72 K14898 SNR72; small nucleolar RNA SNR72
D YNCM0016W SNR73; SNR73 K26463 SNR73; small nucleolar RNA SNR73
D YNCM0014W SNR75; SNR75 K14901 SNR75; small nucleolar RNA SNR75
D YNCM0013W SNR76; SNR76 K14902 SNR76; small nucleolar RNA SNR76
D YNCM0011W SNR78; SNR78 K26464 SNR78; small nucleolar RNA SNR78
D YNCL0005C SNR79; SNR79 K14905 SNR79; small nucleolar RNA SNR79
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
D YNCH0012W SNR32; SNR32 K14916 SNORA14; small nucleolar RNA SNORA14
D YNCN0018W SNR49; SNR49 K14926 SNORA40; small nucleolar RNA SNORA40
D YNCO0026W SNR8; SNR8 K26478 SNR8; small nucleolar RNA SNR8
D YNCG0013W SNR10; SNR10 K26479 SNR10; small nucleolar RNA SNR10
D YNCO0024C SNR35; SNR35 K26465 SNR35; small nucleolar RNA SNR35
B Other snoRNA
C YNCN0013W NME1; NME1 K26477 NME1; small nucleolar RNA MRP
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024