+F Repair protein KO #

  DNA Repair and Recombination Proteins - Streptomyces coelicolor

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D SCO6151 SC1A9.15; methylated-DNA-protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D SCO6462 SC9B5.29; methylated-DNA-protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D SCO1969 SC3C9.04; DNA-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D SCO0842 phr; deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E SCO1114 2SCG38.07; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E SCO1343 2SCG61.25c; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E SCO1792 SCI51.32c; 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E SCO3355 mutY; adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E SCO3569 SCH17.03c; endonuclease K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D SCO5102 SCBAC28G1.28; mutT-like protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SCO1767 SCI51.07c; DNA hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SCO5817 DNA hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SCO4143 SCD84.10c; mutT-like protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SCO3260 SCE39.10; MutT-like protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SCO5637 SC6A9.30c; mutT-like protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SCO5868 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D SCO6151 SC1A9.15; methylated-DNA-protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D SCO6462 SC9B5.29; methylated-DNA-protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D SCO1969 SC3C9.04; DNA-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D SCO0842 phr; deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D SCO0184 SCJ1.33; hypothetical protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] D SCO1040 SCG20A.20c; DNA repair protein K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E SCO1114 2SCG38.07; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E SCO1343 2SCG61.25c; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E SCO1255 2SCG18.02; G/U mismatch-specific DNA glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] E SCO1990 SC7H2.04c; hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E SCO4495 SCD35.02; DNA polymerase-like protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E SCO6461 SC9B5.28; ADA-like regulatory protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E SCO6150 SC1A9.14; ADA-like regulatory protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E SCO1792 SCI51.32c; 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E SCO3355 mutY; adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E SCO5143 SCP8.06; DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E SCO0945 SCM10.34c; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E SCO5573 SC7A1.17; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E SCO5760 SC7C7.15c; DNA glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] E SCO2626 SCC80.11c; DNA repair hydrolase (fragment) K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] E SCO3569 SCH17.03c; endonuclease K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E SCO6341 SC3A7.09; exonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E SCO3174 SCE87.25c; exodeoxyribonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E SCO2111 SC6E10.05; endonuclease K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E SCO6726 SC5F2A.09; endonuclease K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ D DNA ligase E SCO5494 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E SCO7522 SCBAC25F8.14c; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E SCO2003 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E SCO1958 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E SCO0918 SCM10.06; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E SCO1966 SC3C9.01c; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E SCO1953 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E SCO4797 SCD63A.08; ATP-dependent DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SCO5188 2SC3B6.12; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SCO5184 2SC3B6.08; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SCO2003 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E SCO5494 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E SCO7522 SCBAC25F8.14c; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F SCO4654 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F SCO4655 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F SCO4729 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F SCO1478 SC9C5.02c; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F SCO3109 SCE41.18c; transcriptional-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors D Molecular matchmaker D Strand discrimination factor D DNA exonucleases E SCO5056 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E SCO5055 SCK7.28c; exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E SCO2064 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E SCP1.224c dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E SCO3878 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E SCP1.119 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E SCO2564 SCC123.02c; DNA-binding protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E SCO3541 SCH5.03c; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E SCO1827 SCI8.12; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E SCO6084 SCBAC1A6.08; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E SCO1534 SCL2.24; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E SCO4067 dnaZ; DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E SCO5494 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E SCO7522 SCBAC25F8.14c; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E SCO4797 SCD63A.08; ATP-dependent DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SCO5188 2SC3B6.12; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SCO5184 2SC3B6.08; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SCO3907 SCH24.29; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E SCO2683 SCC61A.04c; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E SCO2737 SCC57A.08c; deoxyribonuclease K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E SCO5769 recA; recombinase A K03553 recA; recombination protein RecA E SCO1519 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E SCO1518 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E SCO1520 ruvC; Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E SCO1475 SCL6.32c; primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E SCO1300 SCBAC36F5.11c; exonuclease K03546 sbcC; DNA repair protein SbcC/Rad50 E SCO1301 SCBAC36F5.12c; exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E SCO5769 recA; recombinase A K03553 recA; recombination protein RecA E SCO3351 SCE94.02; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E SCO3876 recF; recombination protein F K03629 recF; DNA replication and repair protein RecF E SCO5566 SC7A1.10; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E SCO2510 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E SCO3618 recR; recombination protein RecR K06187 recR; recombination protein RecR E SCO1780 SCI51.20c; DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) E SCO1519 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E SCO1518 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E SCO1520 ruvC; Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins E SCO1300 SCBAC36F5.11c; exonuclease K03546 sbcC; DNA repair protein SbcC/Rad50 E SCO1301 SCBAC36F5.12c; exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E SCO0601 SCF55.25c; hypothetical protein K10979 ku; DNA end-binding protein Ku E SCO5309 SC6G9.24c; hypothetical protein K10979 ku; DNA end-binding protein Ku E SCP1.68 hypothetical protein K10979 ku; DNA end-binding protein Ku E SCP1.285c hypothetical protein K10979 ku; DNA end-binding protein Ku E SCO6498 SC1E6.07; hypothetical protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E SCO7345 SC4G10.24c; ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E SCO5308 SC6G9.25; hypothetical protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F SCO5836 SC9B10.03c; DNA topoisomerase IV subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F SCO3873 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F SCO5822 DNA topoisomerase IV subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F SCO3874 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F SCO3543 SCH5.06c; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F SCO5556 SC1C2.37; histone-like DNA binding protein K03530 hupB; DNA-binding protein HU-beta F SCO2950 hup; DNA-binding protein HU (hs1) K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F SCO2510 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F SCO3618 recR; recombination protein RecR K06187 recR; recombination protein RecR F SCO5494 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] F SCO7522 SCBAC25F8.14c; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F SCO4577 SCD16A.06c; helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F SCO5815 ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F SCO1958 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F SCO0918 SCM10.06; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F SCO1966 SC3C9.01c; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D SCO1380 SC10A9.22c; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D SCO5769 recA; recombinase A K03553 recA; recombination protein RecA D SCO5803 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D SCO1780 SCI51.20c; DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) D SCO1739 SCI11.28c; DNA polymerase III subunit alpha K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D SCO3907 SCH24.29; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D SCO2683 SCC61A.04c; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D SCO5770 recX; recombination regulator RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D SCO5802 SC4H2.23; ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D SCO5761 SC7C7.16c; ATP-dependent DNA helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D SCO6640 SC4G2.14; ATP-dependent helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D SCO5102 SCBAC28G1.28; mutT-like protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SCO1767 SCI51.07c; DNA hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SCO5817 DNA hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SCO4143 SCD84.10c; mutT-like protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SCO3260 SCE39.10; MutT-like protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SCO5637 SC6A9.30c; mutT-like protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SCO1775 SCI51.15c; hypothetical protein K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58] D SCO5868 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D SCO5805 nrdJ; vitamin B12-dependent ribonucleotide reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D SCO5226 nrdL; ribonucleotide-diphosphate reductase large chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D SCO5225 nrdM; ribonucleotide-diphosphate reductase small chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024