+E Transcription factors KO #

  Transcription Factors - Ruegeria pomeroyi

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins D SPO1049 DNA methylase, C-5 cytosine-specific family K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D SPO1660 transcriptional regulator, AraC family K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA D SPO0258 transcriptional regulator, AraC family K18991 mtrA; AraC family transcriptional regulator, activator of mtrCDE D SPO3615 transcriptional regulator, AraC family K13652 K13652; AraC family transcriptional regulator D SPO3578 ADA regulatory protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D SPO3311 ADA regulatory protein, putative K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D SPO1399 transcriptional regulator, AraC family K17736 cdhR; AraC family transcriptional regulator, carnitine catabolism transcriptional activator D SPOA0060 transcriptional regulator, AraC family K17736 cdhR; AraC family transcriptional regulator, carnitine catabolism transcriptional activator D SPO1002 transcriptional regulator, AraC family K17736 cdhR; AraC family transcriptional regulator, carnitine catabolism transcriptional activator D SPO1941 transcriptional regulator, AraC family K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator D SPO2704 transcriptional regulator, AraC family K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator D SPO3397 transcriptional regulator, AraC family K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator C LysR family D SPO0324 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D SPO1640 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D SPO2860 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D SPO3020 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D SPOA0107 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D SPO0033 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D SPO1954 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D SPO3748 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D SPO3379 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D SPOA0284 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D SPOA0314 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D SPO0206 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D SPO0583 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D SPOA0047 pcaQ; pca operon transcriptional activator PcaQ K02623 pcaQ; LysR family transcriptional regulator, pca operon transcriptional activator D SPO3015 metR; transcriptional regulator MetR K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D SPO2105 transcriptional regulator, LysR family K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D SPO2238 transcriptional regulator, LysR family K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D SPO3315 transcriptional regulator, LysR family K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D SPOA0177 hydrogen peroxide-inducible genes activator, putative K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D SPO1078 transcriptional regulator, LysR family K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D SPO3192 transcriptional regulator, LysR family K17737 dhcR; LysR family transcriptional regulator, carnitine catabolism transcriptional activator D SPO2381 transcriptional regulator, LysR family K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein D SPOA0281 transcriptional regulator, LysR family K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT D SPOA0159 cuyR; CuyR K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT D SPO2668 transcriptional regulator, LysR family K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT D SPO3779 transcriptional regulator, LysR family K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT D SPO2656 transcriptional regulator, LysR family K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT D SPOA0230 transcriptional regulator, LysR family K21699 bauR; LysR family transcriptional regulator, transcriptional activator for bauABCD operon D SPO0639 transcriptional regulator, LysR family K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator C DeoR family D SPO0731 glpR; glycerol-3-phosphate regulon repressor K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D SPO0707 transcriptional regulator, DeoR family K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor C LacI family D SPO0590 hpsR; transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D SPOA0242 transcriptional regulator, LacI family K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor D SPOA0252 transcriptional regulator, LacI family K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor D SPOA0259 transcriptional regulator, LacI family K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor D SPOA0336 transcriptional regulator, LacI family K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor D SPO3684 transcriptional regulator, LacI family K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor C GntR family D SPO0467 transcriptional regulator, GntR family K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein D SPO2190 hutC; histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D SPO1369 transcriptional regulator, GntR family K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D SPO1842 transcriptional regulator, GntR family K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D SPO1475 transcriptional regulator, GntR family K03710 K03710; GntR family transcriptional regulator D SPO2439 transcriptional regulator, GntR family K03710 K03710; GntR family transcriptional regulator D SPO3231 pdhR; pyruvate dehydrogenase complex repressor K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D SPO2550 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D SPO1912 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D SPO1553 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D SPOA0199 transcriptional regulator, GntR family K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D SPO3562 tauR; Taurine transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D SPOA0379 transcriptional regulator, GntR family K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D SPO3185 transcriptional regulator, GntR family K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D SPOA0375 transcriptional regulator, gntR family K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase C TetR/AcrR family D SPO1082 betI; HTH-type transcriptional regulator BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes D SPO1086 transcriptional regulator, TetR family K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes D SPO1780 transcriptional regulator, TetR family K09017 rutR; TetR/AcrR family transcriptional regulator D SPO3299 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon C Lrp/AsnC family D SPO3009 putR; proline dehydrogenase transcriptional activator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D SPO2624 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D SPO0119 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D SPO0389 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D SPO2372 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D SPO1368 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D SPO2189 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D SPOA0317 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D SPO0223 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D SPO0569 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D SPO1138 doeX; AsnC/Lrp-like DNA-binding protein, transcriptional regulator K15782 doeX; Lrp/AsnC family transcriptional regulator, regulator of ectoine-degradation genes D SPO2631 transcriptional regulator, AsnC family K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator D SPO1367 transcriptional regulator, AsnC family K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator D SPO3179 transcriptional regulator, AsnC family K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator C LuxR family D SPO1974 autoinducer-binding transcriptional regulator, LuxR family K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA D SPO0371 luxR-1; autoinducer-binding transcriptional regulator LuxR K25873 raiR; LuxR family transcriptional regulator, quorum-sensing system regulator RaiR C MarR family D SPO0821 transcriptional regulator, MarR family K22296 nicR; MarR family transcriptional regulator, lower aerobic nicotinate degradation pathway regulator D SPO0255 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D SPO1453 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D SPO0919 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family D SPO0793 cueR; Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D SPO0960 transcriptional regulator, MerR family K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA D SPO0314 soxR; redox-sensitive transcriptional activator SoxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR C Fur family D SPO2477 mur; Manganese uptake regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D SPO0986 zur; zinc uptake regulation protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D SPOA0445 transcriptional regulator, Fur family K09826 irr; Fur family transcriptional regulator, iron response regulator C IclR family D SPOA0143 transcriptional regulator, IclR family K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D SPOA0268 transcriptional regulator, IclR family K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D SPO0768 transcriptional regulator, IclR family K13641 iclR; IclR family transcriptional regulator, acetate operon repressor C CRP/FNR family D SPO1335 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D SPOA0206 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D SPOA0391 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D SPO3531 fnrL; transcriptional activator protein FnrL K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D SPO1615 cyclic nucleotide-binding protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D SPO0395 cyclic nucleotide-binding protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein C Rrf2 family D SPO2025 iron-sulfur cluster assembly transcription factor IscR, putative K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D SPO0432 rrf2 family protein K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor D SPOA0186 Rrf2 family protein K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor C ArsR family D SPO3563 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D SPO3877 transcriptional regulator/arsenate reductase K23988 arsR-arsC; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor / arsenate reductase (thioredoxin) [EC:1.20.4.4] C XRE family D SPO3704 DNA-binding/shikimate kinase domain protein K15546 boxR; XRE family transcriptional regulator, aerobic/anaerobic benzoate catabolism transcriptional regulator D SPO1090 DNA-binding protein, putative K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator D SPO1022 transcriptional regulator, putative K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator D SPO3313 DNA-binding protein, putative K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization D SPO0141 DNA binding protein, putative K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization C PadR family D SPO1252a Transcriptional regulator K10947 K10947; PadR family transcriptional regulator C Other families D SPO0614 transcriptional regulator, putative K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D SPO2762 biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D SPO1265 DNA-binding protein, putative K22300 dicA; HTH-type transcriptional regulator, cell division transcriptional repressor D SPO3788 acoR; acetoin catabolism regulatory protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D SPO0700 molybdenum-binding transcriptional regulator, ModE family K02019 modE; molybdate transport system regulatory protein B Ribbon-helix-helix C CopG family C Other families D SPO3010 putA; bifunctional PutA protein K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] B Other transcription factors C BglG family C Others D SPOA0049 nosR; nitrous-oxide reductase transcriptional activator NosR K19339 nosR; NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator D SPO1521 regulatory protein, putative K19339 nosR; NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator D SPO2849 BolA protein, truncation K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D SPO0004 parB; chromosome partitioning protein parB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D SPOA0303 replication protein, putative K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D SPO1420 transcriptional regulator, CarD family K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D SPO0009 hrcA; heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D SPO0051 TENA/THI-4 family protein K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] D SPO0734 PaaX domain protein K02616 paaX; phenylacetic acid degradation operon negative regulatory protein D SPO3898 DNA-binding protein, putative K07733 alpA; prophage regulatory protein D SPO0269 negative transcriptional regulator K07734 paiB; transcriptional regulator D SPO0296 hypothetical protein K07735 algH; putative transcriptional regulator D SPO2511 dnaK suppressor protein, putative K06204 dksA; RNA polymerase-binding transcription factor D SPO2248 dnaK suppressor protein, putative K06204 dksA; RNA polymerase-binding transcription factor D SPO1753 riboflavin biosynthesis protein RibX K07738 nrdR; transcriptional repressor NrdR D SPO0156 rtcR; transcriptional regulator RtcR K14414 rtcR; transcriptional regulatory protein RtcR D SPO1178 MraZ, putative K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 8, 2024 #
Classification taken and modified from TRANSFAC 7.0