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Transcription Machinery - Streptomyces avermitilis
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AEukaryotic type
B RNA polymerase II system
C RNA polymerase II
D Core subunits
D Pol II specific subunits
D Pol I, II, III common subunits
D Pol IV and V specific subunits
C Basal transcription factors
D TFIIA
D TFIIB
D TFIID
D TFIIE
D TFIIF
D TFIIH
E SAVERM_3912 putative ATP-dependent DNA helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
C Mediator complex
D Head
D Middle
D Tail
D CDK-module
D Other mediators
C Coactivators
D SAGA/TFTC/STAGA complex
D BAF/PBAF complex
D SWI/SNF complex
D RSC complex
D Others
C Other transcription-related factors
D Transcription elongation factors
D Transcription termination factor
D PAF1 complex
D NELF complex
D Super elongation complex (SEC)
D Little elongation complex (LEC)
D Brd4/P-TEFb complex
D BUR kinase complex
D CTDK-I complex
D 7SK RNP complex
D DBIRD complex
D Others
B RNA polymerase III system
C RNA polymerase III
D Core subunits
D Pol III specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D TFIIIA
D TFIIIB
D TFIIIC
D TFIIIC, fungi type
C Other transcription-related factors
D snRNA-activating protein complex (SNAPc)
D Octamer transcription factors
D Others
B RNA polymerase I system
C RNA polymerase I
D Core subunits
D Pol I specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D SL1/TIF-1B
C Other transcription-related factors
D UBF
D Transcription initiation factors
D Transcription elongation factors
D NoRC (nucleolar remodeling complex)
D CTDK-I complex
D Transcription termination factors
D Others
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AProkaryotic type
B Bacterial type
C RNA polymerase
D Core subunits
E SAVERM_440 rpoA2; putative RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E SAVERM_4953 rpoA; RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E SAVERM_4914 rpoB; RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
E SAVERM_4915 rpoC; RNA polymerase beta prime subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
E SAVERM_6872 rpoZ; RNA polymerase omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D Sigma factors
E SAVERM_2444 rpoD; RNA polymerase major sigma factor, sigma-70 family K03086 rpoD; RNA polymerase primary sigma factor
E SAVERM_5679 sig47; putative RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor
E SAVERM_3038 sig22; putative RNA polymerase ECF-subfamily sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E SAVERM_6582 sig53; putative RNA polymerase ECF-subfamily sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E SAVERM_1195 sig16; putative RNA polymerase ECF-subfamily sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E SAVERM_5123 sig45; putative RNA polymerase ECF-subfamily sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E SAVERM_4303 sig37; putative RNA polymerase ECF-subfamily sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E SAVERM_4427 sig39; putative RNA polymerase ECF-subfamily sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E SAVERM_3318 sig24; putative RNA polymerase ECF-subfamily sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E SAVERM_4999 sig44; putative RNA polymerase ECF-subfamily sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E SAVERM_3363 sig26; putative RNA polymerase ECF-subfamily sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E SAVERM_5398 sig46; putative RNA polymerase ECF-subfamily sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E SAVERM_909 sig11; putative RNA polymerase ECF-subfamily sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E SAVERM_3385 sig27; putative RNA polymerase ECF-subfamily sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E SAVERM_4735 bds; putative RNA polymerase ECF-subfamily sigma factor (BldN) K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E SAVERM_93 sig2; putative RNA polymerase ECF-subfamily sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E SAVERM_7424 sig58; putative RNA polymerase ECF-subfamily sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E SAVERM_6337 sig50; putative RNA polymerase ECF-subfamily sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E SAVERM_7068 sig55; putative RNA polymerase ECF-subfamily sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E SAVERM_7292 sig56; putative RNA polymerase ECF-subfamily sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E SAVERM_614 sig5; putative RNA polymerase ECF-subfamily sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E SAVERM_898 sig10; putative RNA polymerase ECF-subfamily sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E SAVERM_3117 sig23; putative RNA polymerase ECF-subfamily sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E SAVERM_1215 litS; putative RNA polymerase ECF-subfamily sigma factor (sig17) K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E SAVERM_4064 sig33; putative RNA polymerase ECF-subfamily sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E SAVERM_6077 sig49; putative RNA polymerase ECF-subfamily sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E SAVERM_663 sig6; putative RNA polymerase ECF-subfamily sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E SAVERM_3888 sig32; putative RNA polymerase ECF-subfamily sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E SAVERM_3387 sig28; putative RNA polymerase ECF-subfamily sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E SAVERM_700 sig7; putative RNA polymerase ECF-subfamily sigma factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E SAVERM_3013 sig21; putative RNA polymerase sigma factor, sigH K03090 sigB; RNA polymerase sigma-B factor
E SAVERM_1087 sig14; putative RNA polymerase sigma factor K03090 sigB; RNA polymerase sigma-B factor
E SAVERM_7400 sig57; putative RNA polymerase sigma factor K03090 sigB; RNA polymerase sigma-B factor
E SAVERM_741 sig8; putative RNA polymerase sigma factor K03090 sigB; RNA polymerase sigma-B factor
E SAVERM_1873 sig19; putative RNA polymerase sigma factor K03090 sigB; RNA polymerase sigma-B factor
E SAVERM_1151 sig15; putative RNA polymerase sigma factor K03090 sigB; RNA polymerase sigma-B factor
E SAVERM_4186 sig35; putative RNA polymerase sigma factor K03090 sigB; RNA polymerase sigma-B factor
E SAVERM_4185 sig34; putative RNA polymerase sigma factor K03090 sigB; RNA polymerase sigma-B factor
E SAVERM_2630 whiG; putative RNA polymerase sigma factor K02405 fliA; RNA polymerase sigma factor FliA
C Other transcription-related factors
D RNA polymerase-associated proteins
E SAVERM_2553 nusA; putative transcriptional termination/antitermination factor K02600 nusA; transcription termination/antitermination protein NusA
E SAVERM_6860 nusB; putative transcription termination protein K03625 nusB; transcription antitermination protein NusB
E SAVERM_4909 nusG; putative transcription antitermination protein K02601 nusG; transcription termination/antitermination protein NusG
E SAVERM_1096 rsbT; putative anti-sigma factor K17752 rsbT; serine/threonine-protein kinase RsbT [EC:2.7.11.1]
E SAVERM_1095 rsbS; putative anti-sigma factor antagonist K17762 rsbS; rsbT antagonist protein RsbS
E SAVERM_1094 rsbR; putative positive regulatory protein K17763 rsbR; rsbT co-antagonist protein RsbR
E SAVERM_922 prpC3; putative magnesium or manganese-dependent protein phosphatase K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
E SAVERM_923 putative hydrolase K19707 rsbQ; sigma-B regulation protein RsbQ
E SAVERM_4614 rsbV; anti-sigma factor antagonist K04749 rsbV; anti-sigma B factor antagonist
E SAVERM_3012 rsbW1; putative anti-sigma factor K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1]
E SAVERM_4236 hypothetical protein K04757 rsbW; serine/threonine-protein kinase RsbW [EC:2.7.11.1]
D Transcription elongation factors
E SAVERM_6131 putative DNA-binding protein K06204 dksA; RNA polymerase-binding transcription factor
E SAVERM_3301 greA; putative transcription elongation factor K03624 greA; transcription elongation factor GreA
D Transcription termination factor
E SAVERM_1310 rho2; putative transcription termination factor K03628 rho; transcription termination factor Rho
E SAVERM_2915 rho1; putative transcription termination factor Rho K03628 rho; transcription termination factor Rho
B Archaeal type
C RNA polymerase
D Core subunits
C Basal transcription factors
D TFB
D TFE
D TFS
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 9, 2024