+F Repair protein KO #

  DNA Repair and Recombination Proteins - Streptomyces avermitilis

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D SAVERM_6270 ogt3; putative methylated-DNA--protein-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D SAVERM_2053 ogt2; putative methylated-DNA--protein-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D SAVERM_1933 ogt1; putative methylated-DNA--protein-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D SAVERM_2085 alkA2; putative ADA-like regulatory protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D SAVERM_1212 phrB; putative deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E SAVERM_1527 ung1; putative uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E SAVERM_7011 ung2; putative uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E SAVERM_6486 putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E SAVERM_4707 mutY; putative A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E SAVERM_4593 nth; putative endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E SAVERM_3912 putative ATP-dependent DNA helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D SAVERM_3187 putative MutT-like protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SAVERM_6513 putative DNA hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SAVERM_2447 putative DNA hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SAVERM_4071 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SAVERM_2399 dut; putative deoxyuridine 5'-triphosphate pyrophosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D SAVERM_6270 ogt3; putative methylated-DNA--protein-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D SAVERM_2053 ogt2; putative methylated-DNA--protein-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D SAVERM_1933 ogt1; putative methylated-DNA--protein-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D SAVERM_2085 alkA2; putative ADA-like regulatory protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D SAVERM_1212 phrB; putative deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D SAVERM_1443 putative DNA repair protein K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E SAVERM_1527 ung1; putative uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E SAVERM_7011 ung2; putative uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E SAVERM_7076 mug; putative G/U mismatch-specific DNA glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] E SAVERM_6242 hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E SAVERM_1934 alkA1; putative ADA-like regulatory protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E SAVERM_6486 putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E SAVERM_4707 mutY; putative A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E SAVERM_3121 tagA; putative DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E SAVERM_2664 mutM1; putative formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E SAVERM_7289 mutM2; putative formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E SAVERM_2501 nei1; putative endonuclease VIII and DNA N-glycosylase with an AP lyase activity K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] E SAVERM_5427 nei2; putative endonuclease VIII and DNA N-glycosylase with an AP lyase activity K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] E SAVERM_4593 nth; putative endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E SAVERM_3628 exoA; putative exodeoxyribonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E SAVERM_1966 xthA; putative exonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E SAVERM_6091 nfo; putative endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E SAVERM_1684 nfi; putative endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ D DNA ligase E SAVERM_2748 ligA; putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E SAVERM_6227 polA1; putative DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E SAVERM_6286 uvrA1; putative excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E SAVERM_6273 uvrB; putative excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E SAVERM_6291 uvrC; putative excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E SAVERM_3463 uvrD1; putative ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SAVERM_3072 uvrD4; putative ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SAVERM_3076 adnB; putative ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SAVERM_6227 polA1; putative DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E SAVERM_2748 ligA; putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F SAVERM_4914 rpoB; RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F SAVERM_4915 rpoC; RNA polymerase beta prime subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F SAVERM_440 rpoA2; putative RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F SAVERM_4953 rpoA; RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F SAVERM_6872 rpoZ; RNA polymerase omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F SAVERM_3549 mfd; putative transcriptional-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors D Molecular matchmaker D Strand discrimination factor D DNA exonucleases E SAVERM_3211 xseA; putative exoribonuclease large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E SAVERM_3212 xseB; putative exoribonuclease small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E SAVERM_6143 dnaE1; putative DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E SAVERM_4317 dnaN1; putative DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E SAVERM_3362 dnaN2; putative DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E SAVERM_5558 holA; putative DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E SAVERM_4623 holB; putative DNA polymerase III delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E SAVERM_6439 dnaQ1; putative DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E SAVERM_2147 dnaQ3; putative DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E SAVERM_4150 dnaZX; putative DNA polymerase III gamma and tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E SAVERM_2748 ligA; putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E SAVERM_3463 uvrD1; putative ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SAVERM_3072 uvrD4; putative ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SAVERM_3076 adnB; putative ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SAVERM_4288 ssb1; putative single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E SAVERM_5365 ssb2; putative single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E SAVERM_5329 recD; putative exodeoxyribonuclease V K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E SAVERM_2492 recA; putative recombination protein RecA K03553 recA; recombination protein RecA E SAVERM_6834 ruvA; putative Holliday junction DNA helicase subunit B K03550 ruvA; holliday junction DNA helicase RuvA E SAVERM_6835 ruvB; putative Holliday junction DNA helicase subunit A K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E SAVERM_6833 ruvC; putative Holliday junction nuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E SAVERM_6875 priA; putative primosomal protein K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E SAVERM_7056 sbcC; putative ATP-dependent dsDNA exonuclease K03546 sbcC; DNA repair protein SbcC/Rad50 E SAVERM_7055 sbcD; putative ATP-dependent dsDNA exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E SAVERM_2492 recA; putative recombination protein RecA K03553 recA; recombination protein RecA E SAVERM_4710 radA; putative DNA repair protein K04485 radA; DNA repair protein RadA/Sms E SAVERM_4319 recF; putative DNA recombination and repair protein K03629 recF; DNA replication and repair protein RecF E SAVERM_2671 recG; putative ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E SAVERM_5628 recO; putative DNA recombination and repair protein K03584 recO; DNA repair protein RecO (recombination protein O) E SAVERM_4557 recR; putative recombination and repair protein K06187 recR; recombination protein RecR E SAVERM_6499 recN; putative DNA recombination and repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) E SAVERM_6834 ruvA; putative Holliday junction DNA helicase subunit B K03550 ruvA; holliday junction DNA helicase RuvA E SAVERM_6835 ruvB; putative Holliday junction DNA helicase subunit A K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E SAVERM_6833 ruvC; putative Holliday junction nuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E SAVERM_7537 cas1; cas1 K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E SAVERM_7056 sbcC; putative ATP-dependent dsDNA exonuclease K03546 sbcC; DNA repair protein SbcC/Rad50 E SAVERM_7055 sbcD; putative ATP-dependent dsDNA exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11 E SAVERM_4175 hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E SAVERM_2945 ku1; putative Ku70/Ku80 protein K10979 ku; DNA end-binding protein Ku E SAVERM_2946 ligD; putative DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F SAVERM_2423 parC; putative subunit of topoisomerase IV K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F SAVERM_4322 gyrA; putative DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F SAVERM_2442 parE; putative subunit of topoisomerase IV K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F SAVERM_4321 gyrB; putative DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F SAVERM_4621 topA; putative DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F SAVERM_2684 hupB; putative histone-like DNA-binding protein K03530 hupB; DNA-binding protein HU-beta F SAVERM_5127 hup; putative DNA-binding protein Hu 1 K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F SAVERM_5628 recO; putative DNA recombination and repair protein K03584 recO; DNA repair protein RecO (recombination protein O) F SAVERM_4557 recR; putative recombination and repair protein K06187 recR; recombination protein RecR F SAVERM_2748 ligA; putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F SAVERM_4851 recQ; putative ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F SAVERM_2450 putative ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F SAVERM_6286 uvrA1; putative excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F SAVERM_6273 uvrB; putative excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D SAVERM_6985 dinB; putative DNA polymerase IV, DNA damage inducible protein K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D SAVERM_2492 recA; putative recombination protein RecA K03553 recA; recombination protein RecA D SAVERM_2463 lexA; putative SOS regulatory protein LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D SAVERM_6499 recN; putative DNA recombination and repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) D SAVERM_6555 dnaE2; putative DNA polymerase III alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D SAVERM_4288 ssb1; putative single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D SAVERM_5365 ssb2; putative single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D SAVERM_2491 recX; putative regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D SAVERM_2464 dinG; putative ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D SAVERM_2500 lhr; putative ATP-dependent DNA helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D SAVERM_3187 putative MutT-like protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SAVERM_6513 putative DNA hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SAVERM_2447 putative DNA hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SAVERM_4071 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SAVERM_6505 nudF; putative ADP-ribose pyrophosphatase K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58] D SAVERM_2399 dut; putative deoxyuridine 5'-triphosphate pyrophosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D SAVERM_3026 nrdL; putative ribonucleoside-diphosphate reductase alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D SAVERM_2461 nrdA; putative vitamin B12-dependent ribonucleotide reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D SAVERM_3027 nrdM; putative ribonucleoside-diphosphate reductase beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024