+F Repair protein KO
#
DNA Repair and Recombination Proteins - Streptomyces avermitilis
%
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D SAVERM_6270 ogt3; putative methylated-DNA--protein-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D SAVERM_2053 ogt2; putative methylated-DNA--protein-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D SAVERM_1933 ogt1; putative methylated-DNA--protein-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D SAVERM_2085 alkA2; putative ADA-like regulatory protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D SAVERM_1212 phrB; putative deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E SAVERM_1527 ung1; putative uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E SAVERM_7011 ung2; putative uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E SAVERM_6486 putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E SAVERM_4707 mutY; putative A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E SAVERM_4593 nth; putative endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
E SAVERM_3912 putative ATP-dependent DNA helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D SAVERM_3187 putative MutT-like protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D SAVERM_6513 putative DNA hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D SAVERM_2447 putative DNA hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D SAVERM_4071 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D SAVERM_2399 dut; putative deoxyuridine 5'-triphosphate pyrophosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D SAVERM_6270 ogt3; putative methylated-DNA--protein-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D SAVERM_2053 ogt2; putative methylated-DNA--protein-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D SAVERM_1933 ogt1; putative methylated-DNA--protein-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D SAVERM_2085 alkA2; putative ADA-like regulatory protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D SAVERM_1212 phrB; putative deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D SAVERM_1443 putative DNA repair protein K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
C BER (base exicision repair)
D DNA glycosylases
E SAVERM_1527 ung1; putative uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E SAVERM_7011 ung2; putative uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E SAVERM_7076 mug; putative G/U mismatch-specific DNA glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
E SAVERM_6242 hypothetical protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E SAVERM_1934 alkA1; putative ADA-like regulatory protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E SAVERM_6486 putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E SAVERM_4707 mutY; putative A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E SAVERM_3121 tagA; putative DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E SAVERM_2664 mutM1; putative formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E SAVERM_7289 mutM2; putative formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E SAVERM_2501 nei1; putative endonuclease VIII and DNA N-glycosylase with an AP lyase activity K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
E SAVERM_5427 nei2; putative endonuclease VIII and DNA N-glycosylase with an AP lyase activity K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
E SAVERM_4593 nth; putative endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E SAVERM_3628 exoA; putative exodeoxyribonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E SAVERM_1966 xthA; putative exonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E SAVERM_6091 nfo; putative endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
E SAVERM_1684 nfi; putative endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
D RecJ
D DNA ligase
E SAVERM_2748 ligA; putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E SAVERM_6227 polA1; putative DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E SAVERM_6286 uvrA1; putative excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
E SAVERM_6273 uvrB; putative excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
E SAVERM_6291 uvrC; putative excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
E SAVERM_3463 uvrD1; putative ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E SAVERM_3072 uvrD4; putative ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E SAVERM_3076 adnB; putative ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E SAVERM_6227 polA1; putative DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E SAVERM_2748 ligA; putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F SAVERM_4914 rpoB; RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F SAVERM_4915 rpoC; RNA polymerase beta prime subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F SAVERM_440 rpoA2; putative RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F SAVERM_4953 rpoA; RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F SAVERM_6872 rpoZ; RNA polymerase omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F SAVERM_3549 mfd; putative transcriptional-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
E SAVERM_3211 xseA; putative exoribonuclease large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E SAVERM_3212 xseB; putative exoribonuclease small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E SAVERM_6143 dnaE1; putative DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E SAVERM_4317 dnaN1; putative DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E SAVERM_3362 dnaN2; putative DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E SAVERM_5558 holA; putative DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E SAVERM_4623 holB; putative DNA polymerase III delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E SAVERM_6439 dnaQ1; putative DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E SAVERM_2147 dnaQ3; putative DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E SAVERM_4150 dnaZX; putative DNA polymerase III gamma and tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E SAVERM_2748 ligA; putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E SAVERM_3463 uvrD1; putative ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E SAVERM_3072 uvrD4; putative ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E SAVERM_3076 adnB; putative ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E SAVERM_4288 ssb1; putative single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E SAVERM_5365 ssb2; putative single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E SAVERM_5329 recD; putative exodeoxyribonuclease V K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E SAVERM_2492 recA; putative recombination protein RecA K03553 recA; recombination protein RecA
E SAVERM_6834 ruvA; putative Holliday junction DNA helicase subunit B K03550 ruvA; holliday junction DNA helicase RuvA
E SAVERM_6835 ruvB; putative Holliday junction DNA helicase subunit A K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E SAVERM_6833 ruvC; putative Holliday junction nuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E SAVERM_6875 priA; putative primosomal protein K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E SAVERM_7056 sbcC; putative ATP-dependent dsDNA exonuclease K03546 sbcC; DNA repair protein SbcC/Rad50
E SAVERM_7055 sbcD; putative ATP-dependent dsDNA exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E SAVERM_2492 recA; putative recombination protein RecA K03553 recA; recombination protein RecA
E SAVERM_4710 radA; putative DNA repair protein K04485 radA; DNA repair protein RadA/Sms
E SAVERM_4319 recF; putative DNA recombination and repair protein K03629 recF; DNA replication and repair protein RecF
E SAVERM_2671 recG; putative ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E SAVERM_5628 recO; putative DNA recombination and repair protein K03584 recO; DNA repair protein RecO (recombination protein O)
E SAVERM_4557 recR; putative recombination and repair protein K06187 recR; recombination protein RecR
E SAVERM_6499 recN; putative DNA recombination and repair protein K03631 recN; DNA repair protein RecN (Recombination protein N)
E SAVERM_6834 ruvA; putative Holliday junction DNA helicase subunit B K03550 ruvA; holliday junction DNA helicase RuvA
E SAVERM_6835 ruvB; putative Holliday junction DNA helicase subunit A K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E SAVERM_6833 ruvC; putative Holliday junction nuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
E SAVERM_7537 cas1; cas1 K15342 cas1; CRISP-associated protein Cas1
D Archaeal homologous recombinant proteins
E SAVERM_7056 sbcC; putative ATP-dependent dsDNA exonuclease K03546 sbcC; DNA repair protein SbcC/Rad50
E SAVERM_7055 sbcD; putative ATP-dependent dsDNA exonuclease K03547 sbcD; DNA repair protein SbcD/Mre11
E SAVERM_4175 hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
E SAVERM_2945 ku1; putative Ku70/Ku80 protein K10979 ku; DNA end-binding protein Ku
E SAVERM_2946 ligD; putative DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F SAVERM_2423 parC; putative subunit of topoisomerase IV K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F SAVERM_4322 gyrA; putative DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F SAVERM_2442 parE; putative subunit of topoisomerase IV K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F SAVERM_4321 gyrB; putative DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F SAVERM_4621 topA; putative DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F SAVERM_2684 hupB; putative histone-like DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
F SAVERM_5127 hup; putative DNA-binding protein Hu 1 K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F SAVERM_5628 recO; putative DNA recombination and repair protein K03584 recO; DNA repair protein RecO (recombination protein O)
F SAVERM_4557 recR; putative recombination and repair protein K06187 recR; recombination protein RecR
F SAVERM_2748 ligA; putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
E Supressor
F SAVERM_4851 recQ; putative ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F SAVERM_2450 putative ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F SAVERM_6286 uvrA1; putative excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
F SAVERM_6273 uvrB; putative excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D SAVERM_6985 dinB; putative DNA polymerase IV, DNA damage inducible protein K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
C Other SOS response factors
D SAVERM_2492 recA; putative recombination protein RecA K03553 recA; recombination protein RecA
D SAVERM_2463 lexA; putative SOS regulatory protein LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D SAVERM_6499 recN; putative DNA recombination and repair protein K03631 recN; DNA repair protein RecN (Recombination protein N)
D SAVERM_6555 dnaE2; putative DNA polymerase III alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D SAVERM_4288 ssb1; putative single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D SAVERM_5365 ssb2; putative single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D SAVERM_2491 recX; putative regulatory protein RecX K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D SAVERM_2464 dinG; putative ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D SAVERM_2500 lhr; putative ATP-dependent DNA helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
C Modulation of nucleotide pools
D SAVERM_3187 putative MutT-like protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D SAVERM_6513 putative DNA hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D SAVERM_2447 putative DNA hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D SAVERM_4071 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D SAVERM_6505 nudF; putative ADP-ribose pyrophosphatase K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58]
D SAVERM_2399 dut; putative deoxyuridine 5'-triphosphate pyrophosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D SAVERM_3026 nrdL; putative ribonucleoside-diphosphate reductase alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D SAVERM_2461 nrdA; putative vitamin B12-dependent ribonucleotide reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D SAVERM_3027 nrdM; putative ribonucleoside-diphosphate reductase beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024