+D GENES KO
#
KEGG Orthology (KO) - Shewanella oneidensis
%
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A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:son00010]
D SO_3547 pgi; glucose-6-phosphate isomerase Pgi K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D SO_3991 fbp; fructose-16-bisphosphatase Fbp K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D SO_0933 fba; fructose-bisphosphate aldolase class II Calvin cycle subtype Fba K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D SO_1200 tpiA; triosephosphate isomeraseTpiA K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D SO_2345 gapA; glyceraldehyde-3-phosphate dehydrogenase (NAD+) GapA K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D SO_2347 gapB; glyceraldehyde-3-phosphate dehydrogenase GapB K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D SO_0932 pgk; phosphoglycerate kinase Pgk K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D SO_0049 gpmA; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase GpmA K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D SO_3440 eno; enolase Eno K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D SO_2491 pykA; pyruvate kinase II PykA K00873 PK; pyruvate kinase [EC:2.7.1.40]
D SO_2644 ppsA; phosphoenolpyruvate synthase PpsA K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D SO_0424 aceE; pyruvate dehydrogenase E1 component AceE K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D SO_0425 aceF; dihydrolipoamide acetyltransferase AceF K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D SO_0426 lpdA; dihydrolipoamide dehydrogenase LpdA K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D SO_2054 frmA; S-(hydroxymethyl)glutathione dehydrogenase FrmA K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D SO_A0161 frmA; S-(hydroxymethyl)glutathione dehydrogenase FrmA K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D SO_2136 adhE; aldehyde-alcohol dehydrogenase AdhE K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D SO_1490 adhB; alcohol dehydrogenase II AdhB K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D SO_A0164 adhB; alcohol dehydrogenase II AdhB K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D SO_4480 exaC; NAD+-dependent acetaldehyde dehydrogenase ExaC K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-]
D SO_2743 acs; acetyl-coenzyme A synthetase AcsA K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D SO_0693 galM; aldose 1-epimerase GalM K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D SO_2336 pgm; phosphoglucomutase alpha-D-glucose phosphate-specific Pgm K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D SO_2769 aldose 1-epimerase K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15]
D SO_0162 pckA; phosphoenolpyruvate carboxykinase PckA K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D SO_2236 crr; phosphotransferase system (PTS) glucose-specific IIA component Crr K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D SO_1623 ptsG; phosphotransferase system (PTS) glucose-specific IIBC component PtsG K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199]
C 00020 Citrate cycle (TCA cycle) [PATH:son00020]
D SO_1926 gltA; citrate synthase GltA K01647 CS; citrate synthase [EC:2.3.3.1]
D SO_0432 acnB; aconitate hydratase AcnB K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D SO_2629 icd; isocitrate dehydrogenase NADP-dependent Icd K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D SO_1538 isocitrate dehydrogenase NAD-dependent K00030 IDH3; isocitrate dehydrogenase (NAD+) [EC:1.1.1.41]
D SO_1930 sucA; 2-oxoglutarate dehydrogenase complex dehydrogenase E1 component SucA K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D SO_1931 sucB; 2-oxoglutarate dehydrogenase complex succinyl-CoA:dihydrolipoate S-succinyltransferase E2 component SucB K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D SO_0426 lpdA; dihydrolipoamide dehydrogenase LpdA K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D SO_1933 sucD; succinyl-CoA synthase alpha subunit SucD K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D SO_1932 sucC; succinyl-CoA synthase beta subunit SucC K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D SO_1928 sdhA; succinate dehydrogenase flavoprotein subunit SdhA K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D SO_1929 sdhB; succinate dehydrogenase iron-sulfur protein SdhB K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D SO_1927 sdhC; succinate dehydrogenase cytochrome b556 subunit SdhC K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D SO_4778 sdhD; succinate dehydrogenase membrane anchor subunit SdhD K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D SO_0398 frdA; quinol:fumarate reductase FAD-binding subunit FrdA K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12]
D SO_0399 frdB; quinol:fumarate reductase FeS subunit FrdB K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12]
D SO_0396 frdC; quinol:fumarate reductase menaquinol-oxidizing subunit FrdC K25996 frdC; succinate dehydrogenase subunit C
D SO_0397 frdC; quinol:fumarate reductase menaquinol-oxidizing subunit FrdC K25996 frdC; succinate dehydrogenase subunit C
D SO_0970 fccA; periplasmic fumarate reductase FccA K26318 fccA; fumarate reductase (cytochrome) [EC:1.3.2.4]
D SO_2222 fumB; anaerobic fumarate hydratase FumB K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D SO_0770 mdh; NAD dependent malate dehydrogenase Mdh K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D SO_0162 pckA; phosphoenolpyruvate carboxykinase PckA K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D SO_0424 aceE; pyruvate dehydrogenase E1 component AceE K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D SO_0425 aceF; dihydrolipoamide acetyltransferase AceF K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
C 00030 Pentose phosphate pathway [PATH:son00030]
D SO_3547 pgi; glucose-6-phosphate isomerase Pgi K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D SO_2489 zwf; glucose-6-phosphate 1-dehydrogenase Zwf K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D SO_2488 pgl; 6-phosphogluconolactonase Pgl K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31]
D SO_1902 gnd; 6-phosphogluconate dehydrogenase decarboxylating Gnd K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D SO_0292 rpe; ribulose-phosphate 3-epimerase Rpe K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D SO_0930 tkt; transketolase Tkt K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D SO_3546 talB; transaldolase B TalB K00616 TALDO1; transaldolase [EC:2.2.1.2]
D SO_1150 rpiA; ribose 5-phosphate isomerase RpiA K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D SO_3542 xfp; D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase Xfp K01621 xfp; xylulose-5-phosphate/fructose-6-phosphate phosphoketolase [EC:4.1.2.9 4.1.2.22]
D SO_1217 deoC; deoxyribose-phosphate aldolase DeoC K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D SO_0810 rbsK; ribokinase RbsK K00852 rbsK; ribokinase [EC:2.7.1.15]
D SO_1219 deoB; phosphopentomutase DeoB K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D SO_2336 pgm; phosphoglucomutase alpha-D-glucose phosphate-specific Pgm K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D SO_3837 prsA; ribose-phosphate pyrophosphokinase PrsA K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D SO_1980 nadR; ribose phosphate pyrophosphokinase NadR K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D SO_2487 edd; 6-phosphogluconate dehydratase Edd K01690 edd; phosphogluconate dehydratase [EC:4.2.1.12]
D SO_2486 eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase Eda K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D SO_0933 fba; fructose-bisphosphate aldolase class II Calvin cycle subtype Fba K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D SO_3991 fbp; fructose-16-bisphosphatase Fbp K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
C 00040 Pentose and glucuronate interconversions [PATH:son00040]
D SO_4687 wcvB; UDP-glucose dehydrogenase WcvB K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D SO_1665 galU; UTP-glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D SO_0292 rpe; ribulose-phosphate 3-epimerase Rpe K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
C 00051 Fructose and mannose metabolism [PATH:son00051]
D SO_1656 hexA; D-hexose 6-phosphotransferase HexA K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D SO_1755 phosphoglucomutase/phosphomannomutase family protein K01840 manB; phosphomannomutase [EC:5.4.2.8]
D SO_3991 fbp; fructose-16-bisphosphatase Fbp K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D SO_0933 fba; fructose-bisphosphate aldolase class II Calvin cycle subtype Fba K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D SO_1200 tpiA; triosephosphate isomeraseTpiA K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D SO_0431 yniC; 2-deoxyglucose-6-phosphate hydrolase YniC K24204 hxpB; mannitol-1-/sugar-/sorbitol-6-/2-deoxyglucose-6-phosphatase [EC:3.1.3.22 3.1.3.23 3.1.3.50 3.1.3.68]
C 00052 Galactose metabolism [PATH:son00052]
D SO_0693 galM; aldose 1-epimerase GalM K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D SO_0694 galK; galactokinase GalK K00849 galK; galactokinase [EC:2.7.1.6]
D SO_1664 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D SO_1665 galU; UTP-glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D SO_2336 pgm; phosphoglucomutase alpha-D-glucose phosphate-specific Pgm K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D SO_2213 algA; alpha-glucosidase AlgA K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D SO_2450 susB; alpha-glucosidase SusB K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
C 00053 Ascorbate and aldarate metabolism [PATH:son00053]
D SO_4687 wcvB; UDP-glucose dehydrogenase WcvB K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D SO_4686 wcvA; UDP-glucuronate 4-epimerase WcvA K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
C 00500 Starch and sucrose metabolism [PATH:son00500]
D SO_2213 algA; alpha-glucosidase AlgA K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D SO_2450 susB; alpha-glucosidase SusB K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D SO_1665 galU; UTP-glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D SO_1498 glgC; glucose-1-phosphate adenylyltransferase GlgC K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D SO_1499 glgA; glycogen synthase ADP-glucose transglucosylase GlgA K00703 glgA; starch synthase [EC:2.4.1.21]
D SO_1494 glgB; 1,4-alpha-glucan branching enzyme GlgB K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D SO_1496 glgP; glycogen phosphorylase GlgP K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D SO_2459 cga; glucan 14-alpha-glucosidase Cga K01178 SGA1; glucoamylase [EC:3.2.1.3]
D SO_1493 malQ; 4-alpha-glucanotransferase MalQ K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25]
D SO_2236 crr; phosphotransferase system (PTS) glucose-specific IIA component Crr K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D SO_1495 glgX; glycogen isoamylase GlgX K01214 ISA; isoamylase [EC:3.2.1.68]
D SO_2336 pgm; phosphoglucomutase alpha-D-glucose phosphate-specific Pgm K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D SO_3547 pgi; glucose-6-phosphate isomerase Pgi K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D SO_1656 hexA; D-hexose 6-phosphotransferase HexA K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:son00520]
D SO_2250 nagZ; beta-N-acetylglucosaminidase NagZ K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D SO_3509 hexB; beta-N-acetylhexosaminidase HexB K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D SO_2236 crr; phosphotransferase system (PTS) glucose-specific IIA component Crr K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D SO_3505 nagA; N-acetylglucosamine-6-phosphate deacetylase NagA K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
D SO_3507 nagK; N-acetylglucosamine kinase NagK K18676 gspK; glucosamine kinase [EC:2.7.1.8]
D SO_1656 hexA; D-hexose 6-phosphotransferase HexA K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D SO_4741 glmS; glutamine:fructose-6-phosphate transaminase (isomerizing) GlmS K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D SO_3506 nagB; glucosamine-6-phosphate deaminase NagB K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D SO_1199 glmM; phosphoglucosamine mutase GlmM K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D SO_4745 glmU; bifunctional N-acetyl glucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyl transferase GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D SO_1313 anmK; anhydro-N-acetylmuramic acid kinase AnmK K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170]
D SO_2414 2-phosphoglycolate phosphatase family K22292 mupP; N-acetyl-D-muramate 6-phosphate phosphatase [EC:3.1.3.105]
D SO_3635 cell wall phosphotransferase K07102 amgK; N-acetylmuramate 1-kinase [EC:2.7.1.221]
D SO_3634 nucleotidyltransferase family protein K00992 murU; N-acetyl-alpha-D-muramate 1-phosphate uridylyltransferase [EC:2.7.7.99]
D SO_3948 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase MurA K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D SO_0213 murB; UDP-N-acetylenolpyruvoylglucosamine reductase MurB K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D SO_3189 wbpP; UDP-GlkcNAc C4 epimerase WbpP K02473 wbpP; UDP-N-acetylglucosamine/UDP-N-acetylgalactosamine 4-epimerase [EC:5.1.3.7 5.1.3.-]
D SO_3190 wbpA; UDP-N-acetyl-d-glucosamine 6-dehydrogenase WbpA K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-]
D SO_3271 pseB; bifunctional UDP GlcNAc C6 dehydratase/C5 epimerase PseB K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-]
D SO_1623 ptsG; phosphotransferase system (PTS) glucose-specific IIBC component PtsG K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199]
D SO_2336 pgm; phosphoglucomutase alpha-D-glucose phosphate-specific Pgm K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D SO_1665 galU; UTP-glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D SO_4687 wcvB; UDP-glucose dehydrogenase WcvB K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D SO_0694 galK; galactokinase GalK K00849 galK; galactokinase [EC:2.7.1.6]
D SO_1664 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D SO_4686 wcvA; UDP-glucuronate 4-epimerase WcvA K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D SO_3547 pgi; glucose-6-phosphate isomerase Pgi K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D SO_1755 phosphoglucomutase/phosphomannomutase family protein K01840 manB; phosphomannomutase [EC:5.4.2.8]
D SO_1498 glgC; glucose-1-phosphate adenylyltransferase GlgC K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
C 00620 Pyruvate metabolism [PATH:son00620]
D SO_2743 acs; acetyl-coenzyme A synthetase AcsA K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D SO_0424 aceE; pyruvate dehydrogenase E1 component AceE K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D SO_0425 aceF; dihydrolipoamide acetyltransferase AceF K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D SO_0426 lpdA; dihydrolipoamide dehydrogenase LpdA K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D SO_2912 pflB; pyruvate formate-lyase PflB K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D SO_2136 adhE; aldehyde-alcohol dehydrogenase AdhE K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D SO_1490 adhB; alcohol dehydrogenase II AdhB K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D SO_A0164 adhB; alcohol dehydrogenase II AdhB K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D SO_2054 frmA; S-(hydroxymethyl)glutathione dehydrogenase FrmA K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D SO_A0161 frmA; S-(hydroxymethyl)glutathione dehydrogenase FrmA K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D SO_2915 ackA; acetate kinase AckA K00925 ackA; acetate kinase [EC:2.7.2.1]
D SO_2916 pta; phosphate acetyltransferase Pta K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D SO_2491 pykA; pyruvate kinase II PykA K00873 PK; pyruvate kinase [EC:2.7.1.40]
D SO_0511 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein AccB K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D SO_2253 acyP; acylphosphatase AcyP K01512 acyP; acylphosphatase [EC:3.6.1.7]
D SO_4480 exaC; NAD+-dependent acetaldehyde dehydrogenase ExaC K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-]
D SO_0968 ldhA; fermentative lactate dehydrogenase NADH dependent LdhA K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28]
D SO_1521 dld; respiratory FAD-dependent D-lactate dehydrogenase Dld K18930 dld; D-lactate dehydrogenase
D SO_2044 gloA; lactoylglutathione lyase GloA K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D SO_2563 gloB; hydroxyacylglutathione hydrolase GloB K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D SO_3054 metallo-beta-lactamase family protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D SO_3855 sfcA; NAD-dependent malate dehydrogenase (oxaloacetate-decarboxylating) SfcA K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D SO_4118 maeB; NADP-dependent malate dehydrogenase (oxaloacetate-decarboxylating) MaeB K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D SO_0770 mdh; NAD dependent malate dehydrogenase Mdh K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D SO_2222 fumB; anaerobic fumarate hydratase FumB K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D SO_0398 frdA; quinol:fumarate reductase FAD-binding subunit FrdA K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12]
D SO_0399 frdB; quinol:fumarate reductase FeS subunit FrdB K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12]
D SO_0396 frdC; quinol:fumarate reductase menaquinol-oxidizing subunit FrdC K25996 frdC; succinate dehydrogenase subunit C
D SO_0397 frdC; quinol:fumarate reductase menaquinol-oxidizing subunit FrdC K25996 frdC; succinate dehydrogenase subunit C
D SO_0970 fccA; periplasmic fumarate reductase FccA K26318 fccA; fumarate reductase (cytochrome) [EC:1.3.2.4]
D SO_0274 ppc; phosphoenolpyruvate carboxylase Ppc K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D SO_0162 pckA; phosphoenolpyruvate carboxykinase PckA K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D SO_2644 ppsA; phosphoenolpyruvate synthase PpsA K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D SO_1483 aceB; malate synthase A AceB K01638 aceB; malate synthase [EC:2.3.3.9]
D SO_4706 malate synthase domain protein K01638 aceB; malate synthase [EC:2.3.3.9]
D SO_1677 ivdA; 3-ketoacyl-CoA thiolase IvdA K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D SO_4236 leuA; 2-isopropylmalate synthase LeuA K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:son00630]
D SO_1484 aceA; isocitrate lyase AceA K01637 E4.1.3.1; isocitrate lyase [EC:4.1.3.1]
D SO_2743 acs; acetyl-coenzyme A synthetase AcsA K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D SO_1483 aceB; malate synthase A AceB K01638 aceB; malate synthase [EC:2.3.3.9]
D SO_4706 malate synthase domain protein K01638 aceB; malate synthase [EC:2.3.3.9]
D SO_0770 mdh; NAD dependent malate dehydrogenase Mdh K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D SO_1926 gltA; citrate synthase GltA K01647 CS; citrate synthase [EC:2.3.3.1]
D SO_0432 acnB; aconitate hydratase AcnB K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D SO_1677 ivdA; 3-ketoacyl-CoA thiolase IvdA K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D SO_3263 3-oxoacyl-(acyl-carrier-protein) reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36]
D SO_1070 katB; catalase HPII KatB K03781 katE; catalase [EC:1.11.1.6]
D SO_3631 hprA; NADH-dependent hydroxypyruvate reductase HprA K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29]
D SO_0293 gph; 2-phosphoglycolate phosphatase Gph K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D SO_4343 agxT; serine-pyruvate aminotransferase AgxT K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D SO_1268 puuA; gamma-glutamyl-putrescine synthase PuuA K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D SO_4410 glnA; glutamine synthetase GlnA K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D SO_3471 glyA; serine hydroxymethyltransferase GlyA K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D SO_0781 gcvP; glycine dehydrogenase (decarboxylating) GcvP K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D SO_0779 gcvT; aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D SO_0426 lpdA; dihydrolipoamide dehydrogenase LpdA K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D SO_0780 gcvH; glycine cleavage system carrier of aminomethyl moiety GcvH K02437 gcvH; glycine cleavage system H protein
D SO_2771 garR; 2-hydroxy-3-oxopropionate reductase GarR K00042 garR; 2-hydroxy-3-oxopropionate reductase [EC:1.1.1.60]
D SO_1770 garK; glycerate kinase GarK K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D SO_2486 eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase Eda K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D SO_4509 fdhA; formate dehydrogenase molybdopterin-binding subunit FdhA K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D SO_4513 fdhA; Fnr-inducilble formate dehydrogenase molybdopterin-binding subunit FdhA K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D SO_0988 molybdopterin-binding oxidoreductase K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D SO_4510 fdhB; formate dehydrogenase FeS subunit FdhB K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D SO_4514 fdhB; Fnr-inducible formate dehydrogenase FeS subunit FdhB K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D SO_0102 fdnH; nitrate-inducible formate dehydrogenase iron-sulfur subunit FdnH K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D SO_4511 fdhC; formate dehydrogenase cytochrome b subunit FdhC K00127 fdoI; formate dehydrogenase subunit gamma
D SO_4515 fdhC; Fnr-inducible formate dehydrogenase cytochrome b subunit FdhC K00127 fdoI; formate dehydrogenase subunit gamma
D SO_0103 fdnI; nitrate-inducible formate dehydrogenase cytochrome b subunit FdnI K00127 fdoI; formate dehydrogenase subunit gamma
D SO_3922 fdh; formate dehydrogenase cytochrome b Fdh K00127 fdoI; formate dehydrogenase subunit gamma
D SO_1624 purU; formyltetrahydrofolate deformylase PurU K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
C 00640 Propanoate metabolism [PATH:son00640]
D SO_2743 acs; acetyl-coenzyme A synthetase AcsA K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D SO_1900 prpE; propionyl-CoA synthetase PrpE K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17]
D SO_2915 ackA; acetate kinase AckA K00925 ackA; acetate kinase [EC:2.7.2.1]
D SO_2916 pta; phosphate acetyltransferase Pta K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D SO_2339 bkdA1; 3-methyl-2-oxobutanoate dehydrogenase complex E1 component alpha subunit BkdA1 K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D SO_2340 bkdA2; 3-methyl-2-oxobutanoate dehydrogenase complex E1 component beta subunit BkdA2 K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D SO_2341 bkdB; 3-methyl-2-oxobutanoate dehydrogenase complex E2 component BkdB K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D SO_0426 lpdA; dihydrolipoamide dehydrogenase LpdA K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D SO_2912 pflB; pyruvate formate-lyase PflB K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D SO_0021 fadB; aerobic fatty oxidation complex 3-hydroxyacyl-CoA epimerase alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D SO_3088 fadJ; anaerobic fatty oxidation complex alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D SO_0511 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein AccB K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D SO_1276 puuE; GABA aminotransferase PLP-dependent PuuE K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D SO_3497 aptA; beta-alanine-pyruvate transaminase AptA K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18]
D SO_1932 sucC; succinyl-CoA synthase beta subunit SucC K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D SO_1933 sucD; succinyl-CoA synthase alpha subunit SucD K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D SO_1678 ivdB; methylmalonate-semialdehyde dehydrogenase IvdB K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D SO_0344 prpC; 2-methylcitrate synthase PrpC K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5]
D SO_0343 acnD; 2-methyl citrate dehydratase Fe-S dependent AcnD K20455 acnD; 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) [EC:4.2.1.117]
D SO_0342 prpF; 2-methyl aconitate cis-trans isomerase PrpF K09788 prpF; 2-methylaconitate isomerase [EC:5.3.3.-]
D SO_0432 acnB; aconitate hydratase AcnB K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D SO_0345 prpB; 2-methylisocitrate lyase PrpB K03417 prpB; methylisocitrate lyase [EC:4.1.3.30]
D SO_4469 yqhD; NADP-dependent alcohol dehydrogenase iron-containing YqhD K08325 yqhD; NADP-dependent alcohol dehydrogenase [EC:1.1.-.-]
C 00650 Butanoate metabolism [PATH:son00650]
D SO_1677 ivdA; 3-ketoacyl-CoA thiolase IvdA K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D SO_0021 fadB; aerobic fatty oxidation complex 3-hydroxyacyl-CoA epimerase alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D SO_3088 fadJ; anaerobic fatty oxidation complex alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D SO_1800 fabV; enoyl acyl-carrier-protein reductase FabV K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D SO_2136 adhE; aldehyde-alcohol dehydrogenase AdhE K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D SO_3263 3-oxoacyl-(acyl-carrier-protein) reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36]
D SO_1928 sdhA; succinate dehydrogenase flavoprotein subunit SdhA K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D SO_1929 sdhB; succinate dehydrogenase iron-sulfur protein SdhB K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D SO_1927 sdhC; succinate dehydrogenase cytochrome b556 subunit SdhC K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D SO_4778 sdhD; succinate dehydrogenase membrane anchor subunit SdhD K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D SO_0398 frdA; quinol:fumarate reductase FAD-binding subunit FrdA K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12]
D SO_0399 frdB; quinol:fumarate reductase FeS subunit FrdB K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12]
D SO_0396 frdC; quinol:fumarate reductase menaquinol-oxidizing subunit FrdC K25996 frdC; succinate dehydrogenase subunit C
D SO_0397 frdC; quinol:fumarate reductase menaquinol-oxidizing subunit FrdC K25996 frdC; succinate dehydrogenase subunit C
D SO_0970 fccA; periplasmic fumarate reductase FccA K26318 fccA; fumarate reductase (cytochrome) [EC:1.3.2.4]
D SO_1276 puuE; GABA aminotransferase PLP-dependent PuuE K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D SO_1275 puuC; gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase PuuC K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D SO_2912 pflB; pyruvate formate-lyase PflB K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D SO_1893 liuE; 3-hydroxymethylglutaryl-CoA lyase LiuE K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D SO_1892 liuF; acetyl-CoA:acetoacetate-CoA transferase alpha subunit LiuF K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
D SO_1891 liuG; acetyl-CoA:acetoacetate-CoA transferase beta subunit LiuG K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
D SO_2279 ilvI; acetolactate synthase III large subunit IlvI K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D SO_3262 TPP-dependent enzyme involved in flagella modificaiton K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D SO_4347 ilvG; acetolactate synthase II large subunit IlvG K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D SO_2278 ilvH; acetolactate synthase III small subunit IlvH K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D SO_4346 ilvM; acetolactate synthase II small subunit IlvM K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:son00660]
D SO_2279 ilvI; acetolactate synthase III large subunit IlvI K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D SO_3262 TPP-dependent enzyme involved in flagella modificaiton K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D SO_4347 ilvG; acetolactate synthase II large subunit IlvG K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D SO_2278 ilvH; acetolactate synthase III small subunit IlvH K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D SO_4346 ilvM; acetolactate synthase II small subunit IlvM K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D SO_1932 sucC; succinyl-CoA synthase beta subunit SucC K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D SO_1933 sucD; succinyl-CoA synthase alpha subunit SucD K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D SO_4234 leuC; 3-isopropylmalate dehydratase large subunit LeuC K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D SO_4233 leuD; 3-isopropylmalate dehydratase small subunit LeuD K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D SO_4235 leuB; 3-isopropylmalate dehydrogenase LeuB K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:son00562]
D SO_2260 suhB; inositol-phosphate phosphatase SuhB K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D SO_2524 phyS; beta-propeller phytase PhyS K01083 E3.1.3.8; 3-phytase [EC:3.1.3.8]
D SO_1678 ivdB; methylmalonate-semialdehyde dehydrogenase IvdB K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D SO_1200 tpiA; triosephosphate isomeraseTpiA K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:son00190]
D SO_1021 nuoA; NADH-ubiquinone oxidoreductase subunit A NuoA K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D SO_1020 nuoB; NADH-ubiquinone oxidoreductase subunit B NuoB K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D SO_1019 nuoCD; NADH-ubiquinone oxidoreductase subunit CD NuoCD K13378 nuoCD; NADH-quinone oxidoreductase subunit C/D [EC:7.1.1.2]
D SO_1018 nuoE; NADH-ubiquinone oxidoreductase subunit E NuoE K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D SO_1017 nuoF; NADH-ubiquinone oxidoreductase subunit F NuoF K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D SO_1016 nuoG; NADH-ubiquinone oxidoreductase subunit G NuoG K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D SO_1015 nuoH; NADH-ubiquinone oxidoreductase subunit H NuoH K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D SO_1014 nuoI; NADH-ubiquinone oxidoreductase subunit I NuoI K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D SO_1013 nuoJ; NADH-ubiquinone oxidoreductase subunit J NuoJ K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D SO_1012 nuoK; NADH-ubiquinone oxidoreductase subunit K NuoK K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D SO_1011 nuoL; NADH-ubiquinone oxidoreductase subunit L NuoL K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D SO_1010 nuoM; NADH-ubiquinone oxidoreductase subunit M NuoM K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D SO_1009 nuoN; NADH-ubiquinone oxidoreductase subunit N NuoN K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D SO_3517 ndh; respiratory NADH dehydrogenase II Ndh K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D SO_1928 sdhA; succinate dehydrogenase flavoprotein subunit SdhA K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D SO_1929 sdhB; succinate dehydrogenase iron-sulfur protein SdhB K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D SO_1927 sdhC; succinate dehydrogenase cytochrome b556 subunit SdhC K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D SO_4778 sdhD; succinate dehydrogenase membrane anchor subunit SdhD K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D SO_0398 frdA; quinol:fumarate reductase FAD-binding subunit FrdA K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12]
D SO_0399 frdB; quinol:fumarate reductase FeS subunit FrdB K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12]
D SO_0396 frdC; quinol:fumarate reductase menaquinol-oxidizing subunit FrdC K25996 frdC; succinate dehydrogenase subunit C
D SO_0397 frdC; quinol:fumarate reductase menaquinol-oxidizing subunit FrdC K25996 frdC; succinate dehydrogenase subunit C
D SO_0608 petA; ubiquinol-cytochrome c reductase FeS subunit PetA K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D SO_0609 petB; ubiquinol-cytochrome c reductase cytochrome b subunit PetB K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D SO_0610 petC; ubiquinol-cytochrome c reductase cytochrome c1 subunit PetC K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D SO_4614 ctaB; protoheme IX farnesyltransferase (heme O synthase) CtaB K02257 COX10; heme o synthase [EC:2.5.1.141]
D SO_4609 coxC; aa3 type cytochrome c oxidase subunit III CoxC K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9]
D SO_4607 coxA; aa3 type cytochrome c oxidase subunit I CoxA K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9]
D SO_4606 coxB; aa3-type cytochrome c oxidase subunit II CoxB K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9]
D SO_4608 ctaG; aa3 type cytochrome c oxidase assembly protein CtaG K02258 COX11; cytochrome c oxidase assembly protein subunit 11
D SO_4613 ctaA; heme A synthase CtaA K02259 COX15; heme a synthase [EC:1.17.99.9]
D SO_2364 ccoN; Cbb3-type cytochrome c oxidase subunit I CcoN K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9]
D SO_2363 ccoO; Cbb3-type cytochrome c oxidase subunit II CcoO K00405 ccoO; cytochrome c oxidase cbb3-type subunit II
D SO_2362 ccoQ; Cbb3-type cytochrome c oxidase subunit IV CcoQ K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV
D SO_2361 ccoP; Cbb3-type cytochrome c oxidase subunit III CcoP K00406 ccoP; cytochrome c oxidase cbb3-type subunit III
D SO_3286 cydA; cytochrome d ubiquinol oxidase subunit I CydA K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D SO_3285 cydB; cytochrome d ubiquinol oxidase subunit II CydB K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D SO_3284 ybgT; protein YbgT K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7]
D SO_4749 atpA; ATP synthase F1 alpha subunit AtpA K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D SO_4747 atpD; ATP synthase F1 beta subunit AtpD K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D SO_4748 atpG; ATP synthase F1 gamma subunit AtpG K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D SO_4750 atpH; ATP synthase F1 delta subunit AtpH K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D SO_4746 atpC; ATP synthase F1 epsilon subunit AtpC K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D SO_4753 atpB; ATP synthase F0 A subunit AtpB K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D SO_4751 atpF; ATP synthase F0 B subunit AtpF K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D SO_4752 atpE; ATP synthase F0 C subunit AtpE K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D SO_4190 ppaC; inorganic pyrophosphatase manganese-dependent PpaC K15986 ppaC; manganese-dependent inorganic pyrophosphatase [EC:3.6.1.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation in photosynthetic organisms
C 00720 Carbon fixation pathways in prokaryotes
C 00680 Methane metabolism [PATH:son00680]
D SO_2054 frmA; S-(hydroxymethyl)glutathione dehydrogenase FrmA K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D SO_A0161 frmA; S-(hydroxymethyl)glutathione dehydrogenase FrmA K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D SO_2055 frmB; S-formylglutathione hydrolase FrmB K01070 frmB; S-formylglutathione hydrolase [EC:3.1.2.12]
D SO_A0160 frmB; S-formylglutathione hydrolase FrmB K01070 frmB; S-formylglutathione hydrolase [EC:3.1.2.12]
D SO_4509 fdhA; formate dehydrogenase molybdopterin-binding subunit FdhA K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D SO_4513 fdhA; Fnr-inducilble formate dehydrogenase molybdopterin-binding subunit FdhA K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D SO_0988 molybdopterin-binding oxidoreductase K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D SO_4510 fdhB; formate dehydrogenase FeS subunit FdhB K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D SO_4514 fdhB; Fnr-inducible formate dehydrogenase FeS subunit FdhB K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D SO_0102 fdnH; nitrate-inducible formate dehydrogenase iron-sulfur subunit FdnH K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D SO_4511 fdhC; formate dehydrogenase cytochrome b subunit FdhC K00127 fdoI; formate dehydrogenase subunit gamma
D SO_4515 fdhC; Fnr-inducible formate dehydrogenase cytochrome b subunit FdhC K00127 fdoI; formate dehydrogenase subunit gamma
D SO_0103 fdnI; nitrate-inducible formate dehydrogenase cytochrome b subunit FdnI K00127 fdoI; formate dehydrogenase subunit gamma
D SO_3922 fdh; formate dehydrogenase cytochrome b Fdh K00127 fdoI; formate dehydrogenase subunit gamma
D SO_3471 glyA; serine hydroxymethyltransferase GlyA K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D SO_4343 agxT; serine-pyruvate aminotransferase AgxT K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D SO_3631 hprA; NADH-dependent hydroxypyruvate reductase HprA K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29]
D SO_3440 eno; enolase Eno K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D SO_0274 ppc; phosphoenolpyruvate carboxylase Ppc K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D SO_0770 mdh; NAD dependent malate dehydrogenase Mdh K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D SO_0933 fba; fructose-bisphosphate aldolase class II Calvin cycle subtype Fba K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D SO_3991 fbp; fructose-16-bisphosphatase Fbp K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D SO_1232 torA; trimethylamine-N-oxide reductase TorA K07811 torA; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D SO_1233 torC; trimethylamine N-oxide reductase membrane anchored cytochrome c component TorC K03532 torC; trimethylamine-N-oxide reductase (cytochrome c), cytochrome c-type subunit TorC
D SO_1231 torD; TorA-specific chaperone TorD K03533 torD; TorA specific chaperone
D SO_2915 ackA; acetate kinase AckA K00925 ackA; acetate kinase [EC:2.7.2.1]
D SO_2916 pta; phosphate acetyltransferase Pta K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D SO_2743 acs; acetyl-coenzyme A synthetase AcsA K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D SO_2644 ppsA; phosphoenolpyruvate synthase PpsA K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D SO_0049 gpmA; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase GpmA K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D SO_0862 serA; D-3-phosphoglycerate dehydrogenase SerA K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D SO_2410 serC; bifunctional 3-phosphoserine aminotransferase/phosphohydroxythreonine SerC K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D SO_1223 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D SO_2200 rimK; ribosomal protein S6 glutaminyl transferase RimK K14940 cofF; gamma-F420-2:alpha-L-glutamate ligase [EC:6.3.2.32]
C 00910 Nitrogen metabolism [PATH:son00910]
D SO_0848 napA; periplasmic nitrate reductase molybdopterin-binding subunit NapA K02567 napA; nitrate reductase (cytochrome) [EC:1.9.6.1]
D SO_0845 napB; periplasmic nitrate reductase cytochrome c subunit NapB K02568 napB; nitrate reductase (cytochrome), electron transfer subunit
D SO_3980 nrfA; ammonia-forming nitrite reductase NrfA K03385 nrfA; nitrite reductase (cytochrome c-552) [EC:1.7.2.2]
D SO_1363 hcp; hydroxylamine reductase Hcp K05601 hcp; hydroxylamine reductase [EC:1.7.99.1]
D SO_0471 FMN-dependent nitronate monooxygenase K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16]
D SO_2593 gdh; glutamate dehydrogenase (NAD+) Gdh K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D SO_1268 puuA; gamma-glutamyl-putrescine synthase PuuA K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D SO_4410 glnA; glutamine synthetase GlnA K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D SO_1325 gltB; NADPH-dependent glutamate synthase large subunit GltB K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D SO_1324 gltD; NADPH-dependent glutamate synthase small subunit GltD K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D SO_2474 can; beta-class carbonic anhydrase Can K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:son00920]
D SO_3599 cysP; ABC-type sulfate/thiosulfate uptake system substrate-binding component CysP K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein
D SO_4652 sbp; ABC-type sulfate/thiosulfate uptakesystem substrate-binding subunit Sbp K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D SO_4653 cysT; ABC-type sulfate/thiosulfate uptakesystem permease component 1 CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D SO_3600 cysT; ABC-type sulfate/thiosulfate uptake system permease component 1 CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D SO_4654 cysW; ABC-type sulfate/thiosulfate uptakesystem permease component 2 CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D SO_3601 cysW; ABC-type sulfate/thiosulfate uptake system permease component 2 CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D SO_4655 cysA; ABC-type sulfate/thiosulfate uptakesystem ATPase component CysA K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D SO_3602 cysA; ABC-type sulfate/thiosulfate uptake system ATPase component CysA K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D SO_3726 cysN; sulfate adenylyltransferase large subunit CysN K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D SO_3727 cysD; sulfate adenylyltransferase small subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D SO_3723 cysC; adenylylsulfate kinase CysC K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]
D SO_1655 cysQ; 3'(2')5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D SO_0191 cysQ; 3'(2')5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D SO_3736 cysH; phosphoadenylyl-sulfate reductase thioredoxin-dependent CysH K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]
D SO_3738 cysJ; sulfite reductase (NADPH) flavoprotein subunit CysJ K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]
D SO_3737 cysI; sulfite reductase (NADPH) siroheme FeS subunit CysI K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2]
D SO_4062 phsA; sulfur reductase molybdoperterin-binding subunit PhsA K08352 phsA; thiosulfate reductase / polysulfide reductase chain A [EC:1.8.5.5]
D SO_1261 sseA; mercaptopyruvate sulfurtransferase SseA K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D SO_4672 glpE; thiosulfate sulfurtransferase GlpE K02439 glpE; thiosulfate sulfurtransferase [EC:2.8.1.1]
D SO_2262 cysE; serine acetyltransferase CysE K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D SO_2903 cysK; cysteine synthase CysK K01738 cysK; cysteine synthase [EC:2.5.1.47]
D SO_1676 metA; homoserine O-succinyltransferase MetA K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D SO_4056 metB; cystathionine gamma-synthase MetB K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D SO_1429 dmsA; extracellular dimethyl sulfoxide/manganese oxide reductase molybdopterin-binding subunit DmsA K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3]
D SO_4358 extracellular oxidoreductase molybdopterin-binding lipoprotein subunit K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3]
D SO_1430 dmsB; extracellular dimethyl sulfoxide/manganese oxide reductase ferredoxin subunit DmsB K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B
D SO_4357 extracellular oxidoreductase FeS binding subunit K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B
D SO_2768 acyl-CoA dehydrogenase K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41]
D SO_2395 acdS; butyryl-CoA dehydrogenase AcdS K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:son00061]
D SO_0511 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein AccB K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D SO_2775 acpP; acyl carrier protein AcpP K02078 acpP; acyl carrier protein
D SO_4369 acyl carrier protein K02078 acpP; acyl carrier protein
D SO_4368 acyl carrier protein K02078 acpP; acyl carrier protein
D SO_2777 fabD; malonyl CoA-acyl carrier protein transacylase FabD K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D SO_2778 fabH; 3-oxoacyl-(acyl-carrier-protein) synthase III FabH K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D SO_2853 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D SO_3072 fabB; 3-oxoacyl-(acyl-carrier-protein) synthase I FabB K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D SO_4380 beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D SO_2774 fabF; 3-oxoacyl-(acyl-carrier-protein) synthase II FabF K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D SO_4383 fabF; 3-oxoacyl-(acyl-carrier-protein) synthase II FabF K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D SO_1683 ivdG; 3-hydroxyacyl-CoA dehydrogenase IvdG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D SO_2776 fabG; 3-oxoacyl-(acyl-carrier-protein) reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D SO_4382 fabG; 3-oxoacyl-(acyl-carrier-protein) reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D SO_2813 oxidoreductase short chain dehydrogenase/reductase family K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D SO_1856 fabA; 3-hydroxydecanoyl-(acyl-carrier-protein) dehydratase FabA K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D SO_1640 fabZ; (3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D SO_1800 fabV; enoyl acyl-carrier-protein reductase FabV K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D SO_2581 fadD; long chain fatty acid CoA ligase FadD K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D SO_0075 icfE; long-chain-fatty-acid--CoA ligase IcfE K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D SO_3664 fadD; long chain fatty acid CoA ligase FadD K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:son00071]
D SO_1677 ivdA; 3-ketoacyl-CoA thiolase IvdA K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D SO_3089 fadI; anaerobic fatty oxidation complex beta subunit FadI K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D SO_0020 fadA; aerobic fatty oxidation complex 3-ketoacyl-CoA thiolase beta subunit FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D SO_0021 fadB; aerobic fatty oxidation complex 3-hydroxyacyl-CoA epimerase alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D SO_3088 fadJ; anaerobic fatty oxidation complex alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D SO_2536 fadE2; acyl-CoA dehydrogenase FadE2 K06445 fadE; acyl-CoA dehydrogenase [EC:1.3.99.-]
D SO_2492 fadE1; acyl-CoA dehydrogenase FadE1 K06445 fadE; acyl-CoA dehydrogenase [EC:1.3.99.-]
D SO_2581 fadD; long chain fatty acid CoA ligase FadD K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D SO_0075 icfE; long-chain-fatty-acid--CoA ligase IcfE K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D SO_3664 fadD; long chain fatty acid CoA ligase FadD K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D SO_2054 frmA; S-(hydroxymethyl)glutathione dehydrogenase FrmA K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D SO_A0161 frmA; S-(hydroxymethyl)glutathione dehydrogenase FrmA K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D SO_2136 adhE; aldehyde-alcohol dehydrogenase AdhE K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D SO_1490 adhB; alcohol dehydrogenase II AdhB K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D SO_A0164 adhB; alcohol dehydrogenase II AdhB K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:son00561]
D SO_1770 garK; glycerate kinase GarK K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D SO_4230 glpK; glycerol kinase GlpK K00864 glpK; glycerol kinase [EC:2.7.1.30]
D SO_4602 plsB; glycerol-3-phosphate O-acyltransferase PlsB K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D SO_2779 plsX; phosphate:acyl-ACP acyltransferase PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D SO_1290 plyY; acyl-PO4 glycerol-3-phosphate acyltransferase PlsY K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D SO_0567 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase PlsC K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D SO_2203 dgkA; diacylglycerol kinase DgkA K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
C 00564 Glycerophospholipid metabolism [PATH:son00564]
D SO_0053 gpsA; glycerol-3-phosphate dehydrogenase (NADP+) GpsA K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D SO_0978 glpD; aerobic glycerol-3-phosphate dehydrogenase GlpD K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D SO_4602 plsB; glycerol-3-phosphate O-acyltransferase PlsB K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D SO_1290 plyY; acyl-PO4 glycerol-3-phosphate acyltransferase PlsY K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D SO_0567 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase PlsC K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D SO_2203 dgkA; diacylglycerol kinase DgkA K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D SO_4733 lypA; lysophospholipase L2 LypA K01048 pldB; lysophospholipase [EC:3.1.1.5]
D SO_0587 glycerophosphodiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D SO_1634 cdsA; phosphatidate cytidylyltransferase CdsA K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D SO_2390 pssA; phosphatidylserine synthase PssA K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D SO_3575 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase PssA K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D SO_0590 psd; phosphatidylserine decarboxylase Psd K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D SO_1862 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase PgsA K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D SO_3463 pgpA; phosphatidylglycerophosphatase A PgpA K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27]
D SO_4335 pgpB; phosphatidylglycerophosphatase B PgpB K01096 pgpB; phosphatidylglycerophosphatase B [EC:3.1.3.27 3.6.1.75 3.1.3.4 3.6.1.27]
C 00565 Ether lipid metabolism
C 00600 Sphingolipid metabolism [PATH:son00600]
D SO_3509 hexB; beta-N-acetylhexosaminidase HexB K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
C 00590 Arachidonic acid metabolism
D SO_1561 cytoplasmic zinc metallopeptidase M1 family K01254 LTA4H; leukotriene-A4 hydrolase [EC:3.3.2.6]
D SO_1997 cold-active zinc metallopeptidase M1 family K01254 LTA4H; leukotriene-A4 hydrolase [EC:3.3.2.6]
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism [PATH:son00592]
D SO_3089 fadI; anaerobic fatty oxidation complex beta subunit FadI K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D SO_0020 fadA; aerobic fatty oxidation complex 3-ketoacyl-CoA thiolase beta subunit FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01040 Biosynthesis of unsaturated fatty acids [PATH:son01040]
D SO_0197 oel1; fatty acid desaturase Ole1 K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D SO_2928 tesA; multifunctional thioesterase/protease/lysophospholipase L1 TesA K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D SO_1912 tesB; acyl-CoA thioesterase II TesB K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:son00230]
D SO_3903 nudF; ADP-ribose pyrophosphatase NudF K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D SO_0190 nudE; ADP compounds hydrolase NudE K08312 nudE; ADP compounds hydrolase [EC:3.6.1.-]
D SO_1219 deoB; phosphopentomutase DeoB K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D SO_2336 pgm; phosphoglucomutase alpha-D-glucose phosphate-specific Pgm K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D SO_3837 prsA; ribose-phosphate pyrophosphokinase PrsA K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D SO_1980 nadR; ribose phosphate pyrophosphokinase NadR K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D SO_3064 purF; amidophosphoribosyltransferase PurF K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D SO_0441 purD; phosphoribosylamine-glycine ligase PurD K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D SO_2761 purN; phosphoribosylglycinamide formyltransferase PurN K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D SO_3613 purT; phosphoribosylglycinamide formyltransferase 2 PurT K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21]
D SO_3287 purL; phosphoribosylformylglycinamidine synthase PurL K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
D SO_2760 purM; phosphoribosylformylglycinamidine cyclo-ligase PurM K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D SO_3555 purK; phosphoribosylaminoimidazole carboxylase ATPase subunit PurK K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D SO_3554 purE; phosphoribosylaminoimidazole carboxylase catalytic subunit PurE K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D SO_4066 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase PurC K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D SO_2635 purB; adenylosuccinate lyase PurB K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D SO_0442 purH; bifunctional IMP cyclohydrolase/phosphoribosylaminoimidazolecarboxamide formyltransferase PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D SO_2012 apt; adenine phosphoribosyltransferase Apt K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D SO_3317 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D SO_2001 ushA; bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D SO_3435 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D SO_2762 nagD; haloacid dehalogenase subfamily IIA associated with N-acetylglucosamine degradation NagD K02566 nagD; 5'-nucleotidase [EC:3.1.3.5]
D SO_0177 yrfG; HAD-superfamily hydrolase subfamily IA variant 3 protein family YrfG K20881 yrfG; GMP/IMP 5'-nucleotidase [EC:3.1.3.-]
D SO_2020 gsk; inosine-guanosine kinase Gsk K00892 gsk; inosine kinase [EC:2.7.1.73]
D SO_1221 deoD; purine nucleoside phosphorylase DeoD K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D SO_0092 deoD; purine nucleoside phosphorylase DeoD K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D SO_2719 deoD; purine nucleoside phosphorylase DeoD K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D SO_4467 protein of unknown function DUF1255 K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2]
D SO_3578 yfiH; uncharacterized protein YfiH K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D SO_3803 hprT; hypoxanthine phosphoribosyltransferase HprT K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D SO_3293 guaB; inosine-5-monophosphate dehydrogenase GuaB K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D SO_2274 ndk; nucleoside diphosphate kinase Ndk K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D SO_0917 yjjX; inosine/xanthosine triphosphatase YjjX K01529 yjjX; inosine/xanthosine triphosphatase [EC:3.6.1.73]
D SO_3358 yggV; non-canonical purine NTP pyrophosphatase YggV K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D SO_3292 guaA; GMP synthase (glutamine-hydrolysing) GuaA K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D SO_0361 gmk; guanylate kinase Gmk K00942 gmk; guanylate kinase [EC:2.7.4.8]
D SO_2415 nrdA; aerobic ribonucleoside-diphosphate reductase alpha subunit NrdA K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D SO_2416 nrdB; aerobic ribonucleoside-diphosphate reductase beta subunit NrdB K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D SO_2834 nrdD; anaerobic ribonucleoside-triphosphate reductase NrdD K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D SO_2485 dgt; deoxyguanosinetriphosphate triphosphohydrolase Dgt K01129 dgt; dGTPase [EC:3.1.5.1]
D SO_2484 yfbR; 5' nucleotidase YfbR K08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89]
D SO_0359 spoT; bifunctional ppGpp phosphohydrolase/GTP diphosphokinase SpoT K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D SO_0408 gppA; guanosine pentaphosphate phosphatase GppA K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D SO_2185 ppx; exopolyphosphatase Ppx K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D SO_3455 relA; GTP pyrophosphokinase RelA K00951 relA; GTP pyrophosphokinase [EC:2.7.6.5]
D SO_1329 cyaC; adenylate cyclase CyaC K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D SO_4312 cyaA; adenylate cyclase CyaA K05851 cyaA; adenylate cyclase, class 1 [EC:4.6.1.1]
D SO_3778 cyaB; cytoplasmic adenylate cyclase CyaB K05873 cyaB; adenylate cyclase, class 2 [EC:4.6.1.1]
D SO_1258 adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D SO_3937 purA; adenylosuccinate synthetase PurA K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D SO_4731 add; adenosine deaminase Add K01488 add; adenosine deaminase [EC:3.5.4.4]
D SO_1550 putative lysine decarboxylase with DUF3412 domain K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-]
D SO_3565 cpdB; bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3`-nucleotidase CpdB K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D SO_2018 adk; adenylate kinase Adk K00939 adk; adenylate kinase [EC:2.7.4.3]
D SO_3442 nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D SO_3901 cpdA; cyclic 3', 5'-adenosine monophosphate phosphodiesterase CpdA K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]
D SO_3641 apaH; bis(5-nucleosyl)-tetraphosphatase ApaH K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41]
D SO_3723 cysC; adenylylsulfate kinase CysC K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]
D SO_3726 cysN; sulfate adenylyltransferase large subunit CysN K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D SO_3727 cysD; sulfate adenylyltransferase small subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
C 00240 Pyrimidine metabolism [PATH:son00240]
D SO_1142 carB; carbamoyl-phosphate synthase large subunit CarB K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D SO_1141 carA; carbamoyl-phosphate synthase small subunit CarA K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D SO_1301 pyrB; aspartate carbamoyltransferase PyrB K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D SO_3695 pyrC; dihydroorotase homodimeric type PyrC K01465 URA4; dihydroorotase [EC:3.5.2.3]
D SO_2592 pyrD; dihydroorotate dehydrogenase PyrD K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D SO_4255 pyrE; orotate phosphoribosyltransferase PyrE K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D SO_2398 pyrF; orotidine 5`-phosphate decarboxylase PyrF K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D SO_1631 pyrH; uridylate kinase PyrH K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D SO_2274 ndk; nucleoside diphosphate kinase Ndk K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D SO_3442 nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D SO_4095 yhdE; Maf septum formation family protein YhdE K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D SO_2840 protein of unknown function DUF45 K07043 upp; UTP pyrophosphatase [EC:3.6.1.-]
D SO_3441 pyrG; CTP synthase PyrG K01937 pyrG; CTP synthase [EC:6.3.4.2]
D SO_2403 cmk; cytidylate kinase Cmk K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D SO_2617 udk; uridine kinase Udk K00876 udk; uridine kinase [EC:2.7.1.48]
D SO_3317 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D SO_2001 ushA; bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D SO_3435 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D SO_2762 nagD; haloacid dehalogenase subfamily IIA associated with N-acetylglucosamine degradation NagD K02566 nagD; 5'-nucleotidase [EC:3.1.3.5]
D SO_0372 yjjG; 5' nucleotide phosphatase YjjG K08723 yjjG; pyrimidine 5'-nucleotidase [EC:3.1.3.-]
D SO_4133 udp; uridine phosphorylase Udp K00757 udp; uridine phosphorylase [EC:2.4.2.3]
D SO_4297 nadP; N-ribosylnicotinamide phosphorylase NadP K00757 udp; uridine phosphorylase [EC:2.4.2.3]
D SO_4467 protein of unknown function DUF1255 K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2]
D SO_2759 upp; uracil phosphoribosyltransferase Upp K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D SO_3565 cpdB; bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3`-nucleotidase CpdB K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D SO_0811 rihA; pyrimidine-specific ribonucleoside hydrolase RihA K01250 rihA; pyrimidine-specific ribonucleoside hydrolase [EC:3.2.2.-]
D SO_1550 putative lysine decarboxylase with DUF3412 domain K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-]
D SO_2791 cdd; cytidine deaminase Cdd K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D SO_1397 cytosine deaminase K03365 FCY1; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21]
D SO_2834 nrdD; anaerobic ribonucleoside-triphosphate reductase NrdD K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D SO_2616 dcd; deoxycytidine triphosphate deaminase Dcd K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D SO_2415 nrdA; aerobic ribonucleoside-diphosphate reductase alpha subunit NrdA K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D SO_2416 nrdB; aerobic ribonucleoside-diphosphate reductase beta subunit NrdB K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D SO_2484 yfbR; 5' nucleotidase YfbR K08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89]
D SO_2613 tmk; thymidylate kinase Tmk K00943 tmk; dTMP kinase [EC:2.7.4.9]
D SO_4250 dut; deoxyuridine 5-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D SO_1218 deoA; thymidine phosphorylase DeoA K00758 deoA; thymidine phosphorylase [EC:2.4.2.4]
D SO_3140 tdk; thymidine kinase Tdk K00857 tdk; thymidine kinase [EC:2.7.1.21]
D SO_1335 thyA; thymidylate synthase ThyA K00560 thyA; thymidylate synthase [EC:2.1.1.45]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:son00250]
D SO_2406 aspC; aspartate aminotransferase AspC K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D SO_1341 nadB; L-aspartate oxidase component of quinolinate synthetase NadB K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D SO_2421 ansA; L-asparaginase I AnsA K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D SO_2115 iaaA; bifunctional isoaspartyl dipeptidase / l-asparaginase IaaA K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
D SO_3175 wbpQ; asparagine synthase glutamine-hydrolyzing WbpQ K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D SO_2767 asnB; asparagine synthase glutamine-hydrolyzing AsnB K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D SO_2483 yfbQ; PLP-dependent aminotransferase YfbQ K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D SO_4343 agxT; serine-pyruvate aminotransferase AgxT K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D SO_2304 ald; alanine dehydrogenase Ald K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D SO_0278 argG; argininosuccinate synthase ArgG K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D SO_0279 argH; argininosuccinate lyase ArgH K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D SO_1258 adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D SO_3937 purA; adenylosuccinate synthetase PurA K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D SO_2635 purB; adenylosuccinate lyase PurB K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D SO_1301 pyrB; aspartate carbamoyltransferase PyrB K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D SO_1276 puuE; GABA aminotransferase PLP-dependent PuuE K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D SO_1275 puuC; gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase PuuC K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D SO_1325 gltB; NADPH-dependent glutamate synthase large subunit GltB K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D SO_1324 gltD; NADPH-dependent glutamate synthase small subunit GltD K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D SO_2593 gdh; glutamate dehydrogenase (NAD+) Gdh K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D SO_3774 putA; bifunctional proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D SO_1268 puuA; gamma-glutamyl-putrescine synthase PuuA K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D SO_4410 glnA; glutamine synthetase GlnA K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D SO_1142 carB; carbamoyl-phosphate synthase large subunit CarB K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D SO_1141 carA; carbamoyl-phosphate synthase small subunit CarA K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D SO_3365 glsA; glutaminase A GlsA K01425 glsA; glutaminase [EC:3.5.1.2]
D SO_4741 glmS; glutamine:fructose-6-phosphate transaminase (isomerizing) GlmS K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D SO_3506 nagB; glucosamine-6-phosphate deaminase NagB K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D SO_3064 purF; amidophosphoribosyltransferase PurF K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:son00260]
D SO_3427 lysine-sensitive monofunctional aspartokinase LysC family K00928 lysC; aspartate kinase [EC:2.7.2.4]
D SO_3986 lysC; lysine-sensitive aspartokinase III LysC K00928 lysC; aspartate kinase [EC:2.7.2.4]
D SO_3415 thrA; bifunctional aspartokinase I / homoserine dehydrogenase I ThrA K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D SO_4055 metL; bifunctional aspartokinase II/homoserine dehydrogenase methionine-sensitive MetL K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D SO_3070 asd; aspartate semialdehyde dehydrogenese Asd K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D SO_3414 thrB; homoserine kinase ThrB K00872 thrB; homoserine kinase [EC:2.7.1.39]
D SO_3413 thrC; threonine synthase ThrC K01733 thrC; threonine synthase [EC:4.2.3.1]
D SO_3338 ybjU; threonine aldolase YbjU K01620 ltaE; threonine aldolase [EC:4.1.2.48]
D SO_3471 glyA; serine hydroxymethyltransferase GlyA K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D SO_4343 agxT; serine-pyruvate aminotransferase AgxT K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D SO_3631 hprA; NADH-dependent hydroxypyruvate reductase HprA K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29]
D SO_1770 garK; glycerate kinase GarK K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D SO_0049 gpmA; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase GpmA K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D SO_0862 serA; D-3-phosphoglycerate dehydrogenase SerA K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D SO_2410 serC; bifunctional 3-phosphoserine aminotransferase/phosphohydroxythreonine SerC K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D SO_1223 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D SO_4674 kbl; 2-amino-3-ketobutyrate coenzyme A ligase Kbl K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D SO_4673 tdh; L-threonine 3-dehydrogenase Tdh K00060 tdh; threonine 3-dehydrogenase [EC:1.1.1.103]
D SO_0781 gcvP; glycine dehydrogenase (decarboxylating) GcvP K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D SO_0779 gcvT; aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D SO_0426 lpdA; dihydrolipoamide dehydrogenase LpdA K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D SO_0780 gcvH; glycine cleavage system carrier of aminomethyl moiety GcvH K02437 gcvH; glycine cleavage system H protein
D SO_2390 pssA; phosphatidylserine synthase PssA K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D SO_3575 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase PssA K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D SO_2248 sdaA; L-serine ammonia-lyase SdaA K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D SO_4344 ilvA; threonine dehydratase IlvA K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D SO_3024 trpA; tryptophan synthase alpha subunit TrpA K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D SO_3023 trpB; tryptophan synthase beta subunit TrpB K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:son00270]
D SO_2262 cysE; serine acetyltransferase CysE K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D SO_2903 cysK; cysteine synthase CysK K01738 cysK; cysteine synthase [EC:2.5.1.47]
D SO_2191 metC; cystathionine beta-lyase MetC K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D SO_1030 metH; B12-dependent 5-methyltetrahydrofolate--homocysteine methyltransferase MetH K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D SO_0818 metE; B12-independent 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D SO_0929 metK; S-adenosylmethionine synthetase MetK K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D SO_1871 speD; S-adenosylmethionine decarboxylase SpeD K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D SO_3763 speE; spermidine synthase SpeE K00797 speE; spermidine synthase [EC:2.5.1.16]
D SO_3705 5-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D SO_1322 mtnN; 5-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosidase MtnN K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D SO_3578 yfiH; uncharacterized protein YfiH K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D SO_0084 mtnC; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase MtnC K09880 mtnC; enolase-phosphatase E1 [EC:3.1.3.77]
D SO_2350 aspC; aspartate aminotransferase AspC K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D SO_1812 mdeA; methionine gamma-lyase MdeA K01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11]
D SO_2603 yebR; free methionine-R-sulfoxide reductase YebR K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14]
D SO_3006 dcm; Lambda phage type II restriction modification system cytosine-5 DNA methyltransferase Dcm K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D SO_1101 luxS; S-ribosylhomocysteinase LuxS K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D SO_3427 lysine-sensitive monofunctional aspartokinase LysC family K00928 lysC; aspartate kinase [EC:2.7.2.4]
D SO_3986 lysC; lysine-sensitive aspartokinase III LysC K00928 lysC; aspartate kinase [EC:2.7.2.4]
D SO_3415 thrA; bifunctional aspartokinase I / homoserine dehydrogenase I ThrA K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D SO_4055 metL; bifunctional aspartokinase II/homoserine dehydrogenase methionine-sensitive MetL K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D SO_3070 asd; aspartate semialdehyde dehydrogenese Asd K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D SO_1676 metA; homoserine O-succinyltransferase MetA K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D SO_4056 metB; cystathionine gamma-synthase MetB K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D SO_1095 metY; O-acetylhomoserine (thiol)-lyase MetY K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D SO_0340 ilvE; branched-chain-amino-acid transaminase IlvE K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D SO_3559 gshA; glutamate--cysteine ligase GshA K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D SO_0831 gshB; ATP-dependent glutathione synthetase GshB K01920 gshB; glutathione synthase [EC:6.3.2.3]
D SO_2406 aspC; aspartate aminotransferase AspC K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D SO_1261 sseA; mercaptopyruvate sulfurtransferase SseA K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D SO_0770 mdh; NAD dependent malate dehydrogenase Mdh K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D SO_2248 sdaA; L-serine ammonia-lyase SdaA K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D SO_3598 cysM; cysteine synthase B CysM K12339 cysM; S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent) [EC:2.5.1.144]
D SO_0862 serA; D-3-phosphoglycerate dehydrogenase SerA K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D SO_2410 serC; bifunctional 3-phosphoserine aminotransferase/phosphohydroxythreonine SerC K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:son00280]
D SO_0340 ilvE; branched-chain-amino-acid transaminase IlvE K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D SO_2638 ldh; leucine dehydrogenase Ldh K00263 E1.4.1.9; leucine dehydrogenase [EC:1.4.1.9]
D SO_2339 bkdA1; 3-methyl-2-oxobutanoate dehydrogenase complex E1 component alpha subunit BkdA1 K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D SO_2340 bkdA2; 3-methyl-2-oxobutanoate dehydrogenase complex E1 component beta subunit BkdA2 K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D SO_2341 bkdB; 3-methyl-2-oxobutanoate dehydrogenase complex E2 component BkdB K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D SO_0426 lpdA; dihydrolipoamide dehydrogenase LpdA K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D SO_1897 liuA; isovaleryl-CoA dehydrogenase LiuA K00253 IVD; isovaleryl-CoA dehydrogenase [EC:1.3.8.4]
D SO_0021 fadB; aerobic fatty oxidation complex 3-hydroxyacyl-CoA epimerase alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D SO_3088 fadJ; anaerobic fatty oxidation complex alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D SO_3089 fadI; anaerobic fatty oxidation complex beta subunit FadI K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D SO_0020 fadA; aerobic fatty oxidation complex 3-ketoacyl-CoA thiolase beta subunit FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D SO_1682 ivdF; 3-hydroxyisobutyrate dehydrogenase IvdF K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
D SO_1678 ivdB; methylmalonate-semialdehyde dehydrogenase IvdB K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D SO_3497 aptA; beta-alanine-pyruvate transaminase AptA K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18]
D SO_1276 puuE; GABA aminotransferase PLP-dependent PuuE K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D SO_1894 liuD; methylcrotonyl-CoA carboxylase biotin-binding subunit LiuD K01968 MCCC1; 3-methylcrotonyl-CoA carboxylase alpha subunit [EC:6.4.1.4]
D SO_1896 liuB; methylcrotonyl-CoA carboxylase carboxyl transferase subunit LiuB K01969 MCCC2; 3-methylcrotonyl-CoA carboxylase beta subunit [EC:6.4.1.4]
D SO_1895 liuC; methylglutaconyl-CoA hydratase LiuC K13766 liuC; methylglutaconyl-CoA hydratase [EC:4.2.1.18]
D SO_1893 liuE; 3-hydroxymethylglutaryl-CoA lyase LiuE K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D SO_1892 liuF; acetyl-CoA:acetoacetate-CoA transferase alpha subunit LiuF K01028 scoA; 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
D SO_1891 liuG; acetyl-CoA:acetoacetate-CoA transferase beta subunit LiuG K01029 scoB; 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
D SO_1677 ivdA; 3-ketoacyl-CoA thiolase IvdA K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:son00290]
D SO_4344 ilvA; threonine dehydratase IlvA K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D SO_4234 leuC; 3-isopropylmalate dehydratase large subunit LeuC K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D SO_4233 leuD; 3-isopropylmalate dehydratase small subunit LeuD K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D SO_4235 leuB; 3-isopropylmalate dehydrogenase LeuB K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D SO_2279 ilvI; acetolactate synthase III large subunit IlvI K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D SO_3262 TPP-dependent enzyme involved in flagella modificaiton K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D SO_4347 ilvG; acetolactate synthase II large subunit IlvG K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D SO_2278 ilvH; acetolactate synthase III small subunit IlvH K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D SO_4346 ilvM; acetolactate synthase II small subunit IlvM K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D SO_4349 ilvC; ketol-acid reductoisomerase IlvC K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D SO_4345 ilvD; dihydroxy-acid dehydratase IlvD K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D SO_0340 ilvE; branched-chain-amino-acid transaminase IlvE K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D SO_2638 ldh; leucine dehydrogenase Ldh K00263 E1.4.1.9; leucine dehydrogenase [EC:1.4.1.9]
D SO_2483 yfbQ; PLP-dependent aminotransferase YfbQ K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D SO_4236 leuA; 2-isopropylmalate synthase LeuA K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:son00300]
D SO_3427 lysine-sensitive monofunctional aspartokinase LysC family K00928 lysC; aspartate kinase [EC:2.7.2.4]
D SO_3986 lysC; lysine-sensitive aspartokinase III LysC K00928 lysC; aspartate kinase [EC:2.7.2.4]
D SO_3415 thrA; bifunctional aspartokinase I / homoserine dehydrogenase I ThrA K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D SO_4055 metL; bifunctional aspartokinase II/homoserine dehydrogenase methionine-sensitive MetL K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D SO_3070 asd; aspartate semialdehyde dehydrogenese Asd K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D SO_1879 dapA; dihydrodipicolinate synthase DapA K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D SO_1140 dapB; dihydrodipicolinate reductase DapB K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D SO_1625 dapD; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase DapD K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D SO_0617 argD; bifunctional acetylornithine aminotransferase/succinyl-diaminopimelate aminotransferase/succinylornithine transaminase ArgD K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D SO_2471 dapE; succinyl-diaminopimelate desuccinylase DapE K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D SO_4308 dapF; diaminopimelate epimerase DapF K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D SO_4309 lysA; diaminopimelate decarboxylase LysA K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D SO_4224 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase MurE K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D SO_4223 murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanyl ligase MurF K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:son00310]
D SO_1931 sucB; 2-oxoglutarate dehydrogenase complex succinyl-CoA:dihydrolipoate S-succinyltransferase E2 component SucB K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D SO_0426 lpdA; dihydrolipoamide dehydrogenase LpdA K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D SO_0021 fadB; aerobic fatty oxidation complex 3-hydroxyacyl-CoA epimerase alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D SO_3088 fadJ; anaerobic fatty oxidation complex alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D SO_1677 ivdA; 3-ketoacyl-CoA thiolase IvdA K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D SO_1276 puuE; GABA aminotransferase PLP-dependent PuuE K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D SO_1275 puuC; gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase PuuC K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00220 Arginine biosynthesis [PATH:son00220]
D SO_0277 argF; ornithine carbamoyltransferase ArgF K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D SO_0278 argG; argininosuccinate synthase ArgG K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D SO_0279 argH; argininosuccinate lyase ArgH K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D SO_3365 glsA; glutaminase A GlsA K01425 glsA; glutaminase [EC:3.5.1.2]
D SO_1268 puuA; gamma-glutamyl-putrescine synthase PuuA K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D SO_4410 glnA; glutamine synthetase GlnA K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D SO_2593 gdh; glutamate dehydrogenase (NAD+) Gdh K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D SO_2406 aspC; aspartate aminotransferase AspC K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D SO_2483 yfbQ; PLP-dependent aminotransferase YfbQ K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D SO_4245 argA; amino-acid acetyltransferase ArgA K14682 argAB; amino-acid N-acetyltransferase [EC:2.3.1.1]
D SO_0276 argB; acetylglutamate kinase ArgB K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D SO_0275 argC; N-acetyl-gamma-glutamyl-phosphate reductase ArgC K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D SO_0617 argD; bifunctional acetylornithine aminotransferase/succinyl-diaminopimelate aminotransferase/succinylornithine transaminase ArgD K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
C 00330 Arginine and proline metabolism [PATH:son00330]
D SO_1397 cytosine deaminase K03365 FCY1; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21]
D SO_1870 speA; biosynthetic arginine decarboxylase SpeA K01585 speA; arginine decarboxylase [EC:4.1.1.19]
D SO_0887 aguA; agmatine deiminase AguA K10536 aguA; agmatine deiminase [EC:3.5.3.12]
D SO_0314 speF; ornithine decarboxylase SpeF K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
D SO_4136 speC; ornithine decarboxylase SpeC K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
D SO_3763 speE; spermidine synthase SpeE K00797 speE; spermidine synthase [EC:2.5.1.16]
D SO_1871 speD; S-adenosylmethionine decarboxylase SpeD K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D SO_0888 aguB; N-carbamoyl-putrescine amidase AguB K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D SO_0618 astA; arginine N-succinyltransferase AstA K00673 astA; arginine N-succinyltransferase [EC:2.3.1.109]
D SO_2706 astB; N-succinylarginine dihydrolase AstB K01484 astB; succinylarginine dihydrolase [EC:3.5.3.23]
D SO_0619 astD; succinylglutamic semialdehyde dehydrogenase AstD K06447 astD; succinylglutamic semialdehyde dehydrogenase [EC:1.2.1.71]
D SO_2338 astE; succinylglutamate desuccinylase AstE K05526 astE; succinylglutamate desuccinylase [EC:3.5.1.96]
D SO_1274 puuB; gamma-glutamylputrescine oxidoreductase PuuB K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-]
D SO_1264 FAD-dependent oxidoreductase K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-]
D SO_2052 FAD-dependent oxidoreductase K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-]
D SO_3496 gabD; succinate-semialdehyde dehydrogenase [NAD(P)+] GabD K09472 puuC; 4-(gamma-glutamylamino)butanal dehydrogenase [EC:1.2.1.99]
D SO_3354 proC; pyrroline-5-carboxylate reductase ProC K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D SO_3774 putA; bifunctional proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D SO_1121 proB; glutamate 5-kinase ProB K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D SO_1122 proA; gamma-glutamyl phosphate reductase ProA K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D SO_4400 prolyl aminopeptidase S33 family K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D SO_2406 aspC; aspartate aminotransferase AspC K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
C 00340 Histidine metabolism [PATH:son00340]
D SO_2074 hisG; ATP phosphoribosyltransferase HisG K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D SO_2067 hisIE; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase HisIE K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31]
D SO_2069 hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase HisA K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D SO_2070 hisH; imidazole glycerol phosphate synthase glutamine amidotransferase subunit HisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D SO_2068 hisF; imidazole glycerol phosphate synthase cyclase subunit HisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D SO_2071 hisB; bifunctional imidazoleglycerol-phosphate dehydratase/histidinol-phosphatase HisB K01089 hisB; imidazoleglycerol-phosphate dehydratase / histidinol-phosphatase [EC:4.2.1.19 3.1.3.15]
D SO_2072 hisC; histidinol-phosphate aminotransferase HisC K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D SO_2073 hisD; histidinol dehydrogenase HisD K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D SO_0098 hutH; histidine ammonia-lyase HutH K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3]
D SO_4374 phenylalanine/tyrosine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3]
D SO_3057 phenylalanine/histidine ammonia-lyase family protein K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3]
D SO_0097 hutU; urocanate hydratase HutU K01712 hutU; urocanate hydratase [EC:4.2.1.49]
D SO_0095 hutI; imidazolonepropionase HutI K01468 hutI; imidazolonepropionase [EC:3.5.2.7]
D SO_4198 hutG; formimidoylglutamase HutG K01479 hutG; formiminoglutamase [EC:3.5.3.8]
D SO_4620 FAD-dependent oxidoreductase K17363 urdA; urocanate reductase [EC:1.3.99.33]
C 00350 Tyrosine metabolism [PATH:son00350]
D SO_2406 aspC; aspartate aminotransferase AspC K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D SO_2072 hisC; histidinol-phosphate aminotransferase HisC K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D SO_2350 aspC; aspartate aminotransferase AspC K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D SO_1962 hppD; 4-hydroxyphenylpyruvate dioxygenase HppD K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
D SO_1963 hmgA; homogentisate 1,2-dioxygenase HmgA K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5]
D SO_1671 maiA; maleylacetoacetate isomerase MaiA K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2]
D SO_1670 fahA; fumarylacetoacetate hydrolase FahA K16171 faaH; fumarylacetoacetate (FAA) hydrolase [EC:3.7.1.2]
D SO_2054 frmA; S-(hydroxymethyl)glutathione dehydrogenase FrmA K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D SO_A0161 frmA; S-(hydroxymethyl)glutathione dehydrogenase FrmA K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D SO_2136 adhE; aldehyde-alcohol dehydrogenase AdhE K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D SO_1490 adhB; alcohol dehydrogenase II AdhB K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D SO_A0164 adhB; alcohol dehydrogenase II AdhB K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D SO_1275 puuC; gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase PuuC K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00360 Phenylalanine metabolism [PATH:son00360]
D SO_1666 phhA; phenylalanine-4-hydroxylase PhhA K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1]
D SO_2406 aspC; aspartate aminotransferase AspC K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D SO_2072 hisC; histidinol-phosphate aminotransferase HisC K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D SO_2350 aspC; aspartate aminotransferase AspC K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D SO_1962 hppD; 4-hydroxyphenylpyruvate dioxygenase HppD K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
D SO_0725 katG; bifunctional catalase/peroxidase HPI KatG K03782 katG; catalase-peroxidase [EC:1.11.1.21]
D SO_4405 katG; bifunctional catalase/peroxidase HPI KatG K03782 katG; catalase-peroxidase [EC:1.11.1.21]
D SO_0888 aguB; N-carbamoyl-putrescine amidase AguB K01426 E3.5.1.4; amidase [EC:3.5.1.4]
C 00380 Tryptophan metabolism [PATH:son00380]
D SO_4413 kynU; kynureninase KynU K01556 KYNU; kynureninase [EC:3.7.1.3]
D SO_1931 sucB; 2-oxoglutarate dehydrogenase complex succinyl-CoA:dihydrolipoate S-succinyltransferase E2 component SucB K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D SO_0426 lpdA; dihydrolipoamide dehydrogenase LpdA K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D SO_0021 fadB; aerobic fatty oxidation complex 3-hydroxyacyl-CoA epimerase alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D SO_3088 fadJ; anaerobic fatty oxidation complex alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D SO_1677 ivdA; 3-ketoacyl-CoA thiolase IvdA K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D SO_0888 aguB; N-carbamoyl-putrescine amidase AguB K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D SO_1070 katB; catalase HPII KatB K03781 katE; catalase [EC:1.11.1.6]
D SO_0725 katG; bifunctional catalase/peroxidase HPI KatG K03782 katG; catalase-peroxidase [EC:1.11.1.21]
D SO_4405 katG; bifunctional catalase/peroxidase HPI KatG K03782 katG; catalase-peroxidase [EC:1.11.1.21]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:son00400]
D SO_0756 aroG; phospho-2-dehydro-3-deoxyheptonate aldolase phe-sensitive AroG K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D SO_1361 aroF; phospho-2-dehydro-3-deoxyheptonate aldolase tyr-sensitive AroF K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D SO_2646 aroH; phospho-2-dehydro-3-deoxyheptonate aldolase trp-sensitive AroH K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D SO_0287 aroB; 3-dehydroquinate synthase AroB K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D SO_0512 aroQ; 3-dehydroquinate dehydratase type II AroQ K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D SO_0040 aroE; shikimate 5-dehydrogenase AroE K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D SO_0286 aroK; shikimate kinase AroK K00891 aroK; shikimate kinase [EC:2.7.1.71]
D SO_2404 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase AroA K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D SO_3079 aroC; chorismate synthase AroC K01736 aroC; chorismate synthase [EC:4.2.3.5]
D SO_3019 trpE; anthranilate synthase component I TrpE K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D SO_3020 trpG; anthranilate synthase component II glutamine amido-transferase TrpG K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D SO_3021 trpD; anthranilate phosphoribosyltransferase TrpD K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D SO_3022 trpCF; bifunctional indole-3-glycerolphosphate synthetase/phosphoribosylanthranilate isomerase TrpCF K13498 trpCF; indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase [EC:4.1.1.48 5.3.1.24]
D SO_3024 trpA; tryptophan synthase alpha subunit TrpA K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D SO_3023 trpB; tryptophan synthase beta subunit TrpB K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D SO_1362 tyrA; bifunctional chorismate mutase T/prephenate dehydrogenase TyrA K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12]
D SO_1367 pheA; multifunctional chorismate mutase P/prephenate dehydratase/DAHP synthetase PheA K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D SO_2406 aspC; aspartate aminotransferase AspC K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D SO_2072 hisC; histidinol-phosphate aminotransferase HisC K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D SO_2350 aspC; aspartate aminotransferase AspC K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D SO_1666 phhA; phenylalanine-4-hydroxylase PhhA K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:son00410]
D SO_1276 puuE; GABA aminotransferase PLP-dependent PuuE K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D SO_0869 panC; pantoate--beta-alanine ligase PanC K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D SO_3497 aptA; beta-alanine-pyruvate transaminase AptA K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18]
D SO_0021 fadB; aerobic fatty oxidation complex 3-hydroxyacyl-CoA epimerase alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D SO_3088 fadJ; anaerobic fatty oxidation complex alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D SO_1678 ivdB; methylmalonate-semialdehyde dehydrogenase IvdB K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
C 00430 Taurine and hypotaurine metabolism [PATH:son00430]
D SO_1952 ggtA; gamma-glutamyltransferase GgtA K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D SO_0741 ggtB; gamma-glutamyltransferase GgtB K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D SO_2304 ald; alanine dehydrogenase Ald K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D SO_2593 gdh; glutamate dehydrogenase (NAD+) Gdh K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D SO_2916 pta; phosphate acetyltransferase Pta K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D SO_2915 ackA; acetate kinase AckA K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:son00450]
D SO_4056 metB; cystathionine gamma-synthase MetB K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D SO_2191 metC; cystathionine beta-lyase MetC K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D SO_1030 metH; B12-dependent 5-methyltetrahydrofolate--homocysteine methyltransferase MetH K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D SO_0818 metE; B12-independent 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D SO_1812 mdeA; methionine gamma-lyase MdeA K01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11]
D SO_3789 sufS; cysteine desulfurase SufS K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D SO_2303 trxB; thioredoxin reductase TrxB K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D SO_3726 cysN; sulfate adenylyltransferase large subunit CysN K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D SO_3727 cysD; sulfate adenylyltransferase small subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D SO_0196 selD; selenophosphate synthase SelD K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D SO_0105 selA; L-seryl-tRNA selenium transferase SelA K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D SO_2619 metG; methionyl-tRNA synthetase MetG K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:son00460]
D SO_1952 ggtA; gamma-glutamyltransferase GgtA K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D SO_0741 ggtB; gamma-glutamyltransferase GgtB K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D SO_2421 ansA; L-asparaginase I AnsA K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D SO_2115 iaaA; bifunctional isoaspartyl dipeptidase / l-asparaginase IaaA K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
D SO_3471 glyA; serine hydroxymethyltransferase GlyA K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:son00470]
D SO_3916 alr; alanine racemase biosynthetic Alr K01775 alr; alanine racemase [EC:5.1.1.1]
D SO_2217 ddlA; D-alanine--D-alanine ligase DdlA K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D SO_3365 glsA; glutaminase A GlsA K01425 glsA; glutaminase [EC:3.5.1.2]
D SO_0207 murI; glutamate racemase MurI K01776 murI; glutamate racemase [EC:5.1.1.3]
D SO_4221 murD; UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase MurD K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D SO_4308 dapF; diaminopimelate epimerase DapF K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D SO_4309 lysA; diaminopimelate decarboxylase LysA K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
C 00480 Glutathione metabolism [PATH:son00480]
D SO_1952 ggtA; gamma-glutamyltransferase GgtA K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D SO_0741 ggtB; gamma-glutamyltransferase GgtB K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D SO_3559 gshA; glutamate--cysteine ligase GshA K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D SO_0831 gshB; ATP-dependent glutathione synthetase GshB K01920 gshB; glutathione synthase [EC:6.3.2.3]
D SO_0959 periplasmic leucyl metal-dependent aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D SO_1117 cytoplasmic leucyl metal-dependent aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D SO_1368 pepA; cytoplasmic leucine metal-dependent aminopeptidase PepA K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D SO_0876 pepB; aminopeptidase PepB K07751 pepB; PepB aminopeptidase [EC:3.4.11.23]
D SO_2600 pepN; alanyl aminopeptidase PepN K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D SO_1059 periplasmic alanyl aminopeptidase K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D SO_1115 pepD; aminoacyl-histidine/glycine-aspartate dipeptidase PepD K01270 pepD; dipeptidase D [EC:3.4.13.-]
D SO_4697 gst; glutathione S-transferase Gst K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D SO_0746 glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D SO_0012 glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D SO_4702 gor; glutathione-disulfide reductase Gor K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7]
D SO_2629 icd; isocitrate dehydrogenase NADP-dependent Icd K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D SO_1902 gnd; 6-phosphogluconate dehydrogenase decarboxylating Gnd K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D SO_2489 zwf; glucose-6-phosphate 1-dehydrogenase Zwf K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D SO_1563 cytoplasmic glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
D SO_3349 periplasmic glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
D SO_4640 antioxidant AhpC/Tsa family K24138 prx3; glutaredoxin/glutathione-dependent peroxiredoxin [EC:1.11.1.25 1.11.1.27]
D SO_0314 speF; ornithine decarboxylase SpeF K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
D SO_4136 speC; ornithine decarboxylase SpeC K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
D SO_3763 speE; spermidine synthase SpeE K00797 speE; spermidine synthase [EC:2.5.1.16]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation [PATH:son00511]
D SO_3509 hexB; beta-N-acetylhexosaminidase HexB K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
C 00540 Lipopolysaccharide biosynthesis [PATH:son00540]
D SO_1641 lpxA; acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase LpxA K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D SO_4214 lpxC; UDP-3-0-acyl N-acetylglucosamine deacetylase LpxC K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D SO_1639 lpxD; UDP-3-O-(3-hydroxymyristoyl) glucosamine n-acyltransferase LpxD K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D SO_1789 lpxH; UDP-23-diacylglucosamine hydrolase LpxH K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D SO_1642 lpxB; lipid A disaccharide synthase LpxB K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D SO_2801 lpxK; tetraacyldisaccharide 4'-kinase LpxK K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D SO_3956 kdsD; arabinose-5-phosphate isomerase KdsD K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D SO_3827 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase KdsA K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D SO_3957 kdsC; 3-deoxy-manno-octulosonate-8-phosphatase KdsC K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D SO_2478 kdsB; 3-deoxy-D-manno-octulosonate cytidylyltransferase KdsB K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D SO_4676 kdtA; 3-deoxy-D-manno-octulosonic-acid (KDO) transferase KdtA K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D SO_3746 lpxL; lipid A biosynthesis lauroyl acyltransferase LpxL K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D SO_2088 lpxM; KDO 2-(lauroyl)-lipid IVA acyltransferase LpxM K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243]
D SO_2048 sulfatase with domain of unknown function DUF1705 K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D SO_4677 kdkA; 3-deoxy-D-manno-oct-2-ulosonic acid (KDO) kinase KdkA K11211 kdkA; 3-deoxy-D-manno-octulosonic acid kinase [EC:2.7.1.166]
D SO_3745 rfaE; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase RfaE K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D SO_2851 gmhB; DD-heptose 17-bisphosphate phosphatase GmhB K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
C 00542 O-Antigen repeat unit biosynthesis
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:son00541]
D SO_1665 galU; UTP-glucose-1-phosphate uridylyltransferase GalU K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D SO_1664 galE; UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D SO_4687 wcvB; UDP-glucose dehydrogenase WcvB K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D SO_4686 wcvA; UDP-glucuronate 4-epimerase WcvA K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D SO_3186 rmlA; glucose-1-phosphate-thymidylyltransferase RmlA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D SO_3167 rffG; dTDP-glucose-4,6-dehydratase RffG K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D SO_3188 rfbB; dTDP-glucose-4,6-dehydratase RfbB K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D SO_3160 rfbc; dTDP-4-keto-L-rhamnose-35-epimerase RfbC K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D SO_1653 dTDP-4-dehydrorhamnose reductase family K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D SO_4174 dTDP-4-dehydrorhamnose reductase family K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D SO_1755 phosphoglucomutase/phosphomannomutase family protein K01840 manB; phosphomannomutase [EC:5.4.2.8]
D SO_4745 glmU; bifunctional N-acetyl glucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyl transferase GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D SO_3271 pseB; bifunctional UDP GlcNAc C6 dehydratase/C5 epimerase PseB K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-]
D SO_3171 wbfY; polysaccharide biosynthesis protein epimerase/dehydratase-like WbfY K24300 wbpM; UDP-N-acetylglucosamine 4,6-dehydratase [EC:4.2.1.135]
D SO_3173 NAD-dependent epimerase/dehydratase family protein K24310 wbpV; UDP-N-acetyl-alpha-D-quinovosamine dehydrogenase [EC:1.1.1.426]
D SO_3190 wbpA; UDP-N-acetyl-d-glucosamine 6-dehydrogenase WbpA K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-]
D SO_3189 wbpP; UDP-GlkcNAc C4 epimerase WbpP K02473 wbpP; UDP-N-acetylglucosamine/UDP-N-acetylgalactosamine 4-epimerase [EC:5.1.3.7 5.1.3.-]
C 00550 Peptidoglycan biosynthesis [PATH:son00550]
D SO_3948 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase MurA K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D SO_0213 murB; UDP-N-acetylenolpyruvoylglucosamine reductase MurB K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D SO_4218 murC; UDP-N-acetylmuramate--alanine ligase MurC K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D SO_4221 murD; UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase MurD K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D SO_4224 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase MurE K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D SO_2217 ddlA; D-alanine--D-alanine ligase DdlA K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D SO_4223 murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanyl ligase MurF K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D SO_1633 uppS; undecaprenyl diphosphate synthase UppS K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D SO_4274 uppP; undecaprenol diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D SO_1293 uppP; undecaprenol diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D SO_4195 PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D SO_4222 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase MraY K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D SO_4219 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase MurG K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D SO_3735 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase MtgA K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D SO_0280 mcrA; penicillin-binding protein 1A McrA K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D SO_0633 mrcB; penicillin-binding protein 1B MrcB K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D SO_0067 pbpC; penicillin binding protein 1C PbpC K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D SO_1168 mrdA; penicillin-binding protein 2 MrdA K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D SO_4225 ftsI; peptidoglycan synthetase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D SO_1164 dacA; D-alanyl-D-alanine carboxypeptidase DacA K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D SO_2394 dacB; D-alanyl-D-alanine carboxypeptidase DacB K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
C 00552 Teichoic acid biosynthesis [PATH:son00552]
D SO_4274 uppP; undecaprenol diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D SO_1293 uppP; undecaprenol diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D SO_4195 PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D SO_3171 wbfY; polysaccharide biosynthesis protein epimerase/dehydratase-like WbfY K24300 wbpM; UDP-N-acetylglucosamine 4,6-dehydratase [EC:4.2.1.135]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:son00543]
D SO_4179 mxdB; glycosyl transferase family 2 MxdB K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-]
D SO_2262 cysE; serine acetyltransferase CysE K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:son00730]
D SO_2445 thiC; thiamin biosynthesis protein ThiC K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D SO_2444 thiDE; bifunctional hydroxy-(phospho)methylpyrimidine kinase/thiamine-phosphate pyrophosphorylase ThiDE K14153 thiDE; hydroxymethylpyrimidine kinase / phosphomethylpyrimidine kinase / thiamine-phosphate diphosphorylase [EC:2.7.1.49 2.7.4.7 2.5.1.3]
D SO_2443 thiF; adenylyltransferase ThiF K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73]
D SO_2264 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D SO_1531 thiI; thiazole biosynthesis/tRNA modification proteinThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D SO_2440 thiH; thiazole biosynthesis protein ThiH K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19]
D SO_3923 hydG; Fe hydrogenase maturation rSAM protein HydG K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19]
D SO_1525 dxs; 1-deoxy-D-xylulose-5-phosphate synthase Dxs K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D SO_2441 thiG; thiazole-phosphate synthase ThiG K03149 thiG; thiazole synthase [EC:2.8.1.10]
D SO_3464 thiL; thiamine-phosphate kinase ThiL K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D SO_0591 rsgA; 30S ribosome assembly GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D SO_0830 phoA; periplasmic alkaline phosphatase PhoA K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D SO_2018 adk; adenylate kinase Adk K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:son00740]
D SO_2831 ribA; GTP cyclohydrolase II RibA K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D SO_3467 ribBA; bifunctional 34-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II RibBA K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D SO_3469 ribD; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D SO_4305 HAD-superfamily hydrolase subfamily IA variant 1 family protein K20862 yigB; FMN hydrolase / 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.102 3.1.3.104]
D SO_0142 ribB; 3,4-dihydroxy-2-butanone 4-phosphate synthase RibB K02858 ribB; 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12]
D SO_3466 ribE; riboflavin synthase beta subunit RibE K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D SO_2296 ribC; 6,7-dimethyl-8-ribityllumazine synthase alpha subunit RibC K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D SO_3468 riboflavin synthase alpha subunit RibC-like protein K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D SO_3533 ribF; bifunctional flavokinase/FAD synthetase RibF K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D SO_0504 fre; NAD(P)H-flavin reductase Fre K05368 fre; NAD(P)H-flavin reductase [EC:1.5.1.41]
D SO_3903 nudF; ADP-ribose pyrophosphatase NudF K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D SO_2631 MutT/nudix family protein K12152 nudJ; phosphatase NudJ [EC:3.6.1.-]
D SO_3804 ubiX; 3-octaprenyl-4-hydroxybenzoate decarboxylase UbiX K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00750 Vitamin B6 metabolism [PATH:son00750]
D SO_2895 pdxH; pyridoxamine-phosphate oxidase PdxH K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
D SO_0931 e4pd; D-erythrose-4-phosphate dehydrogenase E4pd K03472 epd; D-erythrose 4-phosphate dehydrogenase [EC:1.2.1.72]
D SO_3071 pdxB; erythronate-4-phosphate dehydrogenase PdxB K03473 pdxB; erythronate-4-phosphate dehydrogenase [EC:1.1.1.290]
D SO_2410 serC; bifunctional 3-phosphoserine aminotransferase/phosphohydroxythreonine SerC K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D SO_3638 pdxA; 4-hydroxy-L-threonine phosphate dehydrogenase PdxA K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262]
D SO_1351 pdxJ; pyridoxal phosphate synthase PdxJ K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2]
D SO_3413 thrC; threonine synthase ThrC K01733 thrC; threonine synthase [EC:4.2.3.1]
C 00760 Nicotinate and nicotinamide metabolism [PATH:son00760]
D SO_1341 nadB; L-aspartate oxidase component of quinolinate synthetase NadB K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D SO_2342 nadA; quinolinate synthetase NadA K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D SO_0419 nadC; nicotinate-nucleotide pyrophosphorylase NadC K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D SO_1221 deoD; purine nucleoside phosphorylase DeoD K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D SO_0092 deoD; purine nucleoside phosphorylase DeoD K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D SO_2719 deoD; purine nucleoside phosphorylase DeoD K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D SO_3317 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D SO_2001 ushA; bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D SO_3435 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D SO_2762 nagD; haloacid dehalogenase subfamily IIA associated with N-acetylglucosamine degradation NagD K02566 nagD; 5'-nucleotidase [EC:3.1.3.5]
D SO_1171 nadD; nicotinate-nucleotide adenylyltransferase NadD K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D SO_3442 nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D SO_2021 nadE; NH(3)-dependent NAD(+) synthetase NadE K01916 nadE; NAD+ synthase [EC:6.3.1.5]
D SO_0272 pncC; nicotinamide deamidase PncC K03742 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D SO_1981 nadV; nicotinamide phosphoribosyltransferase NadV K03462 NAMPT; nicotinamide phosphoribosyltransferase [EC:2.4.2.12]
D SO_1938 cobB; deacetylase of acetyl-CoA synthetase NAD-dependent CobB K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D SO_1523 nadF; NAD kinase NadF K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D SO_3740 pntA; NAD(P) transhydrogenase alpha subunit PntA K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D SO_3741 pntB; NAD(P) transhydrogenase beta subunit PntB K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1]
D SO_1275 puuC; gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase PuuC K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00770 Pantothenate and CoA biosynthesis [PATH:son00770]
D SO_2279 ilvI; acetolactate synthase III large subunit IlvI K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D SO_3262 TPP-dependent enzyme involved in flagella modificaiton K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D SO_4347 ilvG; acetolactate synthase II large subunit IlvG K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D SO_2278 ilvH; acetolactate synthase III small subunit IlvH K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D SO_4346 ilvM; acetolactate synthase II small subunit IlvM K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D SO_4349 ilvC; ketol-acid reductoisomerase IlvC K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D SO_4345 ilvD; dihydroxy-acid dehydratase IlvD K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D SO_0870 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase PanB K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D SO_3817 panE; 2-dehydropantoate 2-reductase PanE K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D SO_0869 panC; pantoate--beta-alanine ligase PanC K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D SO_0215 coaA; pantothenate kinase CoaA K00867 coaA; type I pantothenate kinase [EC:2.7.1.33]
D SO_4249 dfp; bifunctional 4'-phosphopantothenoylcysteine decarboxylase/phosphopantothenoylcysteine synthetase Dfp K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D SO_3442 nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D SO_4684 coaD; phosphopantetheine adenylyltransferase CoaD K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D SO_0413 coaE; dephospho-CoA kinase CoaE K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D SO_1352 acpS; holo-(acyl-carrier protein) synthase AcpS K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D SO_1604 pfaE; 4'-phosphopantetheinyl transferase PfaE K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-]
D SO_3116 acyl carrier protein phosphodiesterase AcpH-like protein K08682 acpH; acyl carrier protein phosphodiesterase [EC:3.1.4.14]
D SO_0340 ilvE; branched-chain-amino-acid transaminase IlvE K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D SO_1769 glutamate decarboxylase K24264 panP; aspartate 1-decarboxylase [EC:4.1.1.11]
C 00780 Biotin metabolism [PATH:son00780]
D SO_2738 bioC; SAM-dependent methylase involved in biotin synthesis protein BioC K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197]
D SO_3072 fabB; 3-oxoacyl-(acyl-carrier-protein) synthase I FabB K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D SO_4380 beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D SO_2774 fabF; 3-oxoacyl-(acyl-carrier-protein) synthase II FabF K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D SO_4383 fabF; 3-oxoacyl-(acyl-carrier-protein) synthase II FabF K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D SO_1683 ivdG; 3-hydroxyacyl-CoA dehydrogenase IvdG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D SO_2776 fabG; 3-oxoacyl-(acyl-carrier-protein) reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D SO_4382 fabG; 3-oxoacyl-(acyl-carrier-protein) reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D SO_2813 oxidoreductase short chain dehydrogenase/reductase family K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D SO_1640 fabZ; (3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D SO_4626 bioH; biotin biosynthesis carboxylesterase BioH K02170 bioH; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85]
D SO_2739 bioF; 8-amino-7-oxononanoate synthase BioF K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D SO_2741 bioA; adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D SO_2737 bioD; dethiobiotin synthase BioD K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D SO_2740 bioB; biotin synthase BioB K01012 bioB; biotin synthase [EC:2.8.1.6]
D SO_3925 hydE; Fe hydrogenase maturation rSAM protein HydE K01012 bioB; biotin synthase [EC:2.8.1.6]
D SO_0214 birA; bifunctional biotin operon repressor/biotin-[acetyl-CoA-carboxylase] ligase BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:son00785]
D SO_1162 lipB; lipoyl(octanoyl) transferase LipB K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D SO_1161 lipA; lipoic acid synthetase LipA K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D SO_0426 lpdA; dihydrolipoamide dehydrogenase LpdA K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D SO_0424 aceE; pyruvate dehydrogenase E1 component AceE K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D SO_0425 aceF; dihydrolipoamide acetyltransferase AceF K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D SO_1930 sucA; 2-oxoglutarate dehydrogenase complex dehydrogenase E1 component SucA K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D SO_1931 sucB; 2-oxoglutarate dehydrogenase complex succinyl-CoA:dihydrolipoate S-succinyltransferase E2 component SucB K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D SO_2339 bkdA1; 3-methyl-2-oxobutanoate dehydrogenase complex E1 component alpha subunit BkdA1 K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4]
D SO_2340 bkdA2; 3-methyl-2-oxobutanoate dehydrogenase complex E1 component beta subunit BkdA2 K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4]
D SO_2341 bkdB; 3-methyl-2-oxobutanoate dehydrogenase complex E2 component BkdB K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
D SO_0781 gcvP; glycine dehydrogenase (decarboxylating) GcvP K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D SO_0779 gcvT; aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D SO_0780 gcvH; glycine cleavage system carrier of aminomethyl moiety GcvH K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:son00790]
D SO_4254 folE; GTP cyclohydrolase I FolE K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D SO_0830 phoA; periplasmic alkaline phosphatase PhoA K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D SO_0806 phoD; Ca(2+)-dependent phospholipase D PhoD K01113 phoD; alkaline phosphatase D [EC:3.1.3.1]
D SO_1291 folB; dihydroneopterin aldolase FolB K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D SO_0871 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase FolK K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D SO_1292 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase FolK-like protein K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D SO_1198 folP; dihydropteroate synthase FolP K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D SO_3646 folA; dihydrofolate reductase FolA K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D SO_3067 folC; bifunctional folylpolyglutamate synthase/dihydrofolate synthase FolC K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D SO_2831 ribA; GTP cyclohydrolase II RibA K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D SO_3467 ribBA; bifunctional 34-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II RibBA K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D SO_0613 pabA; para-aminobenzoate synthase glutamine amidotransferase subunit PabA K01664 pabA; para-aminobenzoate synthetase component II [EC:2.6.1.85]
D SO_2221 pabB; para-aminobenzoate synthase aminase component PabB K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85]
D SO_2615 pabC; aminodeoxychorismate lyase PabC K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
D SO_2921 folX; D-erythro-78-dihydroneopterin triphosphate epimerase FolX K07589 folX; D-erythro-7,8-dihydroneopterin triphosphate epimerase [EC:5.1.99.7]
D SO_0772 folM; dihydrofolate reductase FolM K13938 folM; dihydromonapterin reductase / dihydrofolate reductase [EC:1.5.1.50 1.5.1.3]
D SO_1667 phhB; pterin-4-alpha-carbinolamine dehydratase PhhB K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D SO_1666 phhA; phenylalanine-4-hydroxylase PhhA K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1]
D SO_2501 queE; queuosine biosynthesis radical activating enzyme QueE K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D SO_2503 queC; queuosine biosynthesis ATPase QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D SO_1608 queF; NADPH-dependent preQ0 reductase QueF K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D SO_A0149 metallo-beta-lactamase superfamily protein K06897 K06897; 7,8-dihydropterin-6-yl-methyl-4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate synthase [EC:2.5.1.105]
D SO_4724 moaA; tungsten cofactor biosynthesis protein MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D SO_4452 moaA; molybdenum cofactor biosynthesis protein A MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D SO_4451 moaC; molybdenum cofactor biosynthesis protein C MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D SO_4449 moaE; molybdenum cofactor biosynthesis protein E MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D SO_0065 mogA; molybdenum cofactor biosynthesis protein MogA K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D SO_4723 mobB_moeA; bifunctional tungstopterin-guanine dinucleotide biosynthesis protein MobB/MoeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D SO_0138 moeA; molybdenum cofactor biosynthesis protein MoeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D SO_3050 mocA; CTP:molybdopterin cytidylyltransferase MocA K07141 mocA; molybdenum cofactor cytidylyltransferase [EC:2.7.7.76]
D SO_4722 mobA; tungstopterin-guanine dinucleotide biosynthesis protein A MobA K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77]
C 00670 One carbon pool by folate [PATH:son00670]
D SO_3646 folA; dihydrofolate reductase FolA K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D SO_0772 folM; dihydrofolate reductase FolM K13938 folM; dihydromonapterin reductase / dihydrofolate reductase [EC:1.5.1.50 1.5.1.3]
D SO_0560 fhs; formate--tetrahydrofolate ligase Fhs K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]
D SO_1792 folD; bifunctional methylenetetrahydrofolate dehydrogenase (NADP+)/methenyltetrahydrofolate cyclohydrolase FolD K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D SO_3471 glyA; serine hydroxymethyltransferase GlyA K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D SO_2761 purN; phosphoribosylglycinamide formyltransferase PurN K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D SO_0442 purH; bifunctional IMP cyclohydrolase/phosphoribosylaminoimidazolecarboxamide formyltransferase PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D SO_0031 fmt; methionyl-tRNA formyltransferase Fmt K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D SO_0779 gcvT; aminomethyltransferase GcvT K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D SO_1030 metH; B12-dependent 5-methyltetrahydrofolate--homocysteine methyltransferase MetH K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D SO_1335 thyA; thymidylate synthase ThyA K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D SO_1624 purU; formyltetrahydrofolate deformylase PurU K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D SO_4054 metF; 5,10-methylenetetrahydrofolate reductase MetF K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D SO_0774 ygfA; 5-formyltetrahydrofolate cyclo-ligase YgfA K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:son00860]
D SO_3130 gltX; glutamyl-tRNA synthetase GltX K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D SO_3834 hemA; glutamyl-tRNA reductase HemA K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D SO_1300 hemL; glutamate-1-semialdehyde-21-aminomutase HemL K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D SO_2587 hemB; delta-aminolevulinic acid dehydratase HemB K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D SO_4208 hemB; delta-aminolevulinic acid dehydratase HemB K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D SO_4313 hemC; hydroxymethylbilane synthase HemC K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D SO_4314 hemD; uroporphyrinogen-III synthase HemD K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D SO_0435 hemE; uroporphyrinogen decarboxylase HemE K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D SO_0038 hemF; aerobic coproporphyrinogen III oxidase HemF K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3]
D SO_4730 hemN; coproporphyrinogen III oxidase oxygen-independent HemN K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3]
D SO_0025 hemG; oxygen-independent protoporphyrinogen oxidase HemG K00230 hemG; menaquinone-dependent protoporphyrinogen oxidase [EC:1.3.5.3]
D SO_0027 hemG; oxygen-independent protoporphyrinogen oxidase HemG K00230 hemG; menaquinone-dependent protoporphyrinogen oxidase [EC:1.3.5.3]
D SO_3720 hemG; oxygen-independent protoporphyrinogen oxidase HemG K00230 hemG; menaquinone-dependent protoporphyrinogen oxidase [EC:1.3.5.3]
D SO_3348 hemH; ferrochelatase HemH K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D SO_2019 hemH; ferrochelatase HemH K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D SO_4315 hemX; uroporphyrin-III C-methyltransferase HemX K02496 hemX; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D SO_3728 cysG; uroporphyrin-III C-methyltransferase CysG K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D SO_3108 bifunctional 13-dimethyluroporphyrinogen III dehydrogenase/siroheme ferrochelatase K24866 sirC; precorrin-2 dehydrogenase [EC:1.3.1.76]
D SO_4614 ctaB; protoheme IX farnesyltransferase (heme O synthase) CtaB K02257 COX10; heme o synthase [EC:2.5.1.141]
D SO_4613 ctaA; heme A synthase CtaA K02259 COX15; heme a synthase [EC:1.17.99.9]
D SO_1039 cobO; cob(I)alamin adenosyltransferase CobO K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D SO_1038 cobQ; cobyric acid synthase CobQ K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10]
D SO_1321 cobD; adenosylcobinamide-phosphate synthase CobD K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10]
D SO_1037 cobU; bifunctional cobinamide kinase/cobinamide phosphate guanylyltransferase CobU K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62]
D SO_1036 cobS; cobalamin 5-phosphate synthase CobS K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26]
D SO_1035 cobT; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase CobT K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21]
D SO_1031 cobC; alpha-ribazole-5-phosphate phosphatase CobC K02226 cobC; alpha-ribazole phosphatase [EC:3.1.3.73]
D SO_3667 hmuZ; FMN binding heme iron utilization protein HmuZ K07226 hutZ; heme oxygenase (biliverdin-IX-beta and delta-forming) [EC:1.14.99.58]
D SO_1112 brf1; bacterioferritin subunit 1 Bfr1 K03594 bfr; bacterioferritin [EC:1.16.3.1]
D SO_1111 brf2; bacterioferritin subunit 2 Bfr2 K03594 bfr; bacterioferritin [EC:1.16.3.1]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:son00130]
D SO_0131 ubiC; chorismate-pyruvate lyase UbiC K03181 ubiC; chorismate lyase [EC:4.1.3.40]
D SO_0468 ubiA; 4-hydroxybenzoate octaprenyltransferase UbiA K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D SO_0506 ubiD; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98]
D SO_3804 ubiX; 3-octaprenyl-4-hydroxybenzoate decarboxylase UbiX K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D SO_0778 visC; FAD-dependent hydroxylase VisC K18800 ubiI; 2-polyprenylphenol 6-hydroxylase [EC:1.14.13.240]
D SO_2413 ubiG; bifunctional 3-demethylubiquinone-9 3-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase UbiG K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
D SO_0777 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase UbiH K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
D SO_4199 ubiE; bifunctional 2-octaprenyl-6-methoxy-14-benzoquinone methylase/S-adenosylmethionine:2-DMK methyltransferase UbiE K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D SO_1183 ubiF; 2-octaprenyl-3-methyl-6-methoxy-14-benzoquinone hydroxylase UbiF K03184 ubiF; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60]
D SO_4713 menF; menaquinone-specific isochorismate synthase MenF K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
D SO_4573 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase MenD K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9]
D SO_4574 menH; 2-succinyl-6-hydroxy-24-cyclohexadiene-1-carboxylate synthase MenH K08680 menH; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [EC:4.2.99.20]
D SO_4575 menC; O-succinylbenzoate-CoA synthase MenC K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113]
D SO_4576 menE; O-succinylbenzoic acid CoA ligase MenE K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26]
D SO_4739 menB; naphthoate synthase MenB K01661 menB; naphthoate synthase [EC:4.1.3.36]
D SO_1068 4-hydroxybenzoyl-CoA thioesterase family protein K19222 menI; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28]
D SO_1910 menA; 1,4-dihydroxy-2-naphthoate octaprenyltransferase MenA K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D SO_1962 hppD; 4-hydroxyphenylpyruvate dioxygenase HppD K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:son00900]
D SO_1525 dxs; 1-deoxy-D-xylulose-5-phosphate synthase Dxs K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D SO_1635 dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase Dxr K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D SO_3438 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase IspD K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D SO_3836 ispE; 4-diphosphocytidyl-2C-methyl-D-erythritol kinase IspE K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D SO_3437 ispF; 2-C-methyl-D-erythritol 24-cyclodiphosphate synthase IspF K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D SO_3312 ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase IspG K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D SO_3529 ispH; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase IspH K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D SO_1677 ivdA; 3-ketoacyl-CoA thiolase IvdA K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D SO_3804 ubiX; 3-octaprenyl-4-hydroxybenzoate decarboxylase UbiX K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D SO_1526 ispA; geranyl-diphosphate synthase/farnesyl-diphosphate synthase IspA K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D SO_3653 ispB; octaprenyl-diphosphate synthase IspB K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D SO_1633 uppS; undecaprenyl diphosphate synthase UppS K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation [PATH:son00903]
D SO_0616 lipase/esterase K14731 mlhB; epsilon-lactone hydrolase [EC:3.1.1.83]
C 00907 Pinene, camphor and geraniol degradation [PATH:son00907]
D SO_0021 fadB; aerobic fatty oxidation complex 3-hydroxyacyl-CoA epimerase alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D SO_3088 fadJ; anaerobic fatty oxidation complex alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D SO_1893 liuE; 3-hydroxymethylglutaryl-CoA lyase LiuE K01640 HMGCL; hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
D SO_3089 fadI; anaerobic fatty oxidation complex beta subunit FadI K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D SO_0020 fadA; aerobic fatty oxidation complex 3-ketoacyl-CoA thiolase beta subunit FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D SO_0930 tkt; transketolase Tkt K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:son00523]
D SO_3186 rmlA; glucose-1-phosphate-thymidylyltransferase RmlA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D SO_3167 rffG; dTDP-glucose-4,6-dehydratase RffG K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D SO_3188 rfbB; dTDP-glucose-4,6-dehydratase RfbB K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D SO_3160 rfbc; dTDP-4-keto-L-rhamnose-35-epimerase RfbC K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D SO_1653 dTDP-4-dehydrorhamnose reductase family K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D SO_4174 dTDP-4-dehydrorhamnose reductase family K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
D SO_4713 menF; menaquinone-specific isochorismate synthase MenF K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
C 01055 Biosynthesis of vancomycin group antibiotics
D SO_3167 rffG; dTDP-glucose-4,6-dehydratase RffG K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D SO_3188 rfbB; dTDP-glucose-4,6-dehydratase RfbB K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis [PATH:son00332]
D SO_1121 proB; glutamate 5-kinase ProB K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D SO_1122 proA; gamma-glutamyl phosphate reductase ProA K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:son00261]
D SO_3726 cysN; sulfate adenylyltransferase large subunit CysN K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D SO_3727 cysD; sulfate adenylyltransferase small subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D SO_3427 lysine-sensitive monofunctional aspartokinase LysC family K00928 lysC; aspartate kinase [EC:2.7.2.4]
D SO_3986 lysC; lysine-sensitive aspartokinase III LysC K00928 lysC; aspartate kinase [EC:2.7.2.4]
D SO_3415 thrA; bifunctional aspartokinase I / homoserine dehydrogenase I ThrA K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D SO_4055 metL; bifunctional aspartokinase II/homoserine dehydrogenase methionine-sensitive MetL K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D SO_3070 asd; aspartate semialdehyde dehydrogenese Asd K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D SO_1879 dapA; dihydrodipicolinate synthase DapA K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D SO_1140 dapB; dihydrodipicolinate reductase DapB K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:son00521]
D SO_2336 pgm; phosphoglucomutase alpha-D-glucose phosphate-specific Pgm K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D SO_2260 suhB; inositol-phosphate phosphatase SuhB K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D SO_3186 rmlA; glucose-1-phosphate-thymidylyltransferase RmlA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D SO_3167 rffG; dTDP-glucose-4,6-dehydratase RffG K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D SO_3188 rfbB; dTDP-glucose-4,6-dehydratase RfbB K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D SO_3160 rfbc; dTDP-4-keto-L-rhamnose-35-epimerase RfbC K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D SO_1653 dTDP-4-dehydrorhamnose reductase family K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D SO_4174 dTDP-4-dehydrorhamnose reductase family K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
C 00525 Acarbose and validamycin biosynthesis [PATH:son00525]
D SO_3186 rmlA; glucose-1-phosphate-thymidylyltransferase RmlA K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D SO_3167 rffG; dTDP-glucose-4,6-dehydratase RffG K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D SO_3188 rfbB; dTDP-glucose-4,6-dehydratase RfbB K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:son00401]
D SO_1362 tyrA; bifunctional chorismate mutase T/prephenate dehydrogenase TyrA K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12]
D SO_2406 aspC; aspartate aminotransferase AspC K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D SO_2072 hisC; histidinol-phosphate aminotransferase HisC K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D SO_2350 aspC; aspartate aminotransferase AspC K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
C 00404 Staurosporine biosynthesis
D SO_3513 flavin-dependent tryptophan halogenase K14266 prnA; tryptophan 7-halogenase [EC:1.14.19.9]
C 00405 Phenazine biosynthesis
D SO_3019 trpE; anthranilate synthase component I TrpE K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D SO_3020 trpG; anthranilate synthase component II glutamine amido-transferase TrpG K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D SO_2777 fabD; malonyl CoA-acyl carrier protein transacylase FabD K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D SO_1683 ivdG; 3-hydroxyacyl-CoA dehydrogenase IvdG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D SO_2776 fabG; 3-oxoacyl-(acyl-carrier-protein) reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D SO_4382 fabG; 3-oxoacyl-(acyl-carrier-protein) reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D SO_2813 oxidoreductase short chain dehydrogenase/reductase family K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D SO_2775 acpP; acyl carrier protein AcpP K02078 acpP; acyl carrier protein
D SO_4369 acyl carrier protein K02078 acpP; acyl carrier protein
D SO_4368 acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:son00999]
D SO_0929 metK; S-adenosylmethionine synthetase MetK K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D SO_0040 aroE; shikimate 5-dehydrogenase AroE K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:son00362]
D SO_3089 fadI; anaerobic fatty oxidation complex beta subunit FadI K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D SO_0020 fadA; aerobic fatty oxidation complex 3-ketoacyl-CoA thiolase beta subunit FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D SO_0083 carboxymuconolactone decarboxylase family protein K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
D SO_3088 fadJ; anaerobic fatty oxidation complex alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D SO_0021 fadB; aerobic fatty oxidation complex 3-hydroxyacyl-CoA epimerase alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D SO_1677 ivdA; 3-ketoacyl-CoA thiolase IvdA K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00627 Aminobenzoate degradation [PATH:son00627]
D SO_0888 aguB; N-carbamoyl-putrescine amidase AguB K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D SO_2253 acyP; acylphosphatase AcyP K01512 acyP; acylphosphatase [EC:3.6.1.7]
D SO_3804 ubiX; 3-octaprenyl-4-hydroxybenzoate decarboxylase UbiX K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00364 Fluorobenzoate degradation [PATH:son00364]
D SO_1006 yghX; dienelactone hydrolase family protein YghX K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00625 Chloroalkane and chloroalkene degradation [PATH:son00625]
D SO_1490 adhB; alcohol dehydrogenase II AdhB K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D SO_A0164 adhB; alcohol dehydrogenase II AdhB K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D SO_2054 frmA; S-(hydroxymethyl)glutathione dehydrogenase FrmA K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D SO_A0161 frmA; S-(hydroxymethyl)glutathione dehydrogenase FrmA K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D SO_2136 adhE; aldehyde-alcohol dehydrogenase AdhE K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:son00361]
D SO_1006 yghX; dienelactone hydrolase family protein YghX K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00623 Toluene degradation [PATH:son00623]
D SO_1006 yghX; dienelactone hydrolase family protein YghX K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00622 Xylene degradation
C 00633 Nitrotoluene degradation [PATH:son00633]
D SO_3715 nfnB; bifunctional oxygen-insensitive NAD(P)H nitroreductase/dihydropteridine reductase NfnB K10679 nfnB; nitroreductase / dihydropteridine reductase [EC:1.-.-.- 1.5.1.34]
D SO_2453 sye2; NAD(P)H:flavin oxidoreductase Sye2 K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]
D SO_4153 sye3; NAD(P)H:flavin oxidoreductase Sye3 K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]
D SO_2454 sye1; NADH:flavin oxidoreductase Sye1 K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]
D SO_3392 sye4; NAD(P)H:flavin oxidoreductase Sye4 K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]
C 00642 Ethylbenzene degradation
D SO_3089 fadI; anaerobic fatty oxidation complex beta subunit FadI K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D SO_0020 fadA; aerobic fatty oxidation complex 3-ketoacyl-CoA thiolase beta subunit FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 00643 Styrene degradation [PATH:son00643]
D SO_1963 hmgA; homogentisate 1,2-dioxygenase HmgA K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5]
D SO_1671 maiA; maleylacetoacetate isomerase MaiA K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2]
D SO_1670 fahA; fumarylacetoacetate hydrolase FahA K16171 faaH; fumarylacetoacetate (FAA) hydrolase [EC:3.7.1.2]
D SO_0888 aguB; N-carbamoyl-putrescine amidase AguB K01426 E3.5.1.4; amidase [EC:3.5.1.4]
C 00791 Atrazine degradation
C 00930 Caprolactam degradation [PATH:son00930]
D SO_0616 lipase/esterase K14731 mlhB; epsilon-lactone hydrolase [EC:3.1.1.83]
D SO_0021 fadB; aerobic fatty oxidation complex 3-hydroxyacyl-CoA epimerase alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D SO_3088 fadJ; anaerobic fatty oxidation complex alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
C 00626 Naphthalene degradation [PATH:son00626]
D SO_1490 adhB; alcohol dehydrogenase II AdhB K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D SO_A0164 adhB; alcohol dehydrogenase II AdhB K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D SO_2054 frmA; S-(hydroxymethyl)glutathione dehydrogenase FrmA K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D SO_A0161 frmA; S-(hydroxymethyl)glutathione dehydrogenase FrmA K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D SO_2136 adhE; aldehyde-alcohol dehydrogenase AdhE K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:son03020]
D SO_0224 rpoB; DNA-directed RNA polymerase beta subunit RpoB K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D SO_0225 rpoC; DNA-directed RNA polymerase beta' subunit RpoC K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D SO_0256 rpoA; DNA-directed RNA polymerase alpha subunit RpoA K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D SO_0360 rpoZ; DNA-directed RNA polymerase omega subunit RpoZ K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:son03010]
D SO_2402 rpsA; ribosomal protein S1 RpsA K02945 RP-S1; small subunit ribosomal protein S1
D SO_1629 rpsB; 30S ribosomal protein S2 RpsB K02967 RP-S2; small subunit ribosomal protein S2
D SO_0237 rpsC; 30S ribosomal protein S3 RpsC K02982 RP-S3; small subunit ribosomal protein S3
D SO_0255 rpsD; 30S ribosomal protein S4 RpsD K02986 RP-S4; small subunit ribosomal protein S4
D SO_0248 rpsE; 30S ribosomal protein S5 RpsE K02988 RP-S5; small subunit ribosomal protein S5
D SO_3930 rpsF; 30S ribosomal protein S6 RpsF K02990 RP-S6; small subunit ribosomal protein S6
D SO_0227 rpsG; 30S ribosomal protein S7 RpsG K02992 RP-S7; small subunit ribosomal protein S7
D SO_0245 rpsH; 30S ribosomal protein S8 RpsH K02994 RP-S8; small subunit ribosomal protein S8
D SO_3939 rpsI; 30S ribosomal protein S9 RpsI K02996 RP-S9; small subunit ribosomal protein S9
D SO_0230 rpsJ; 30S ribosomal protein S10 RpsJ K02946 RP-S10; small subunit ribosomal protein S10
D SO_0254 rpsK; 30S ribosomal protein S11 RpsK K02948 RP-S11; small subunit ribosomal protein S11
D SO_0226 rpsL; 30S ribosomal protein S12p RpsL K02950 RP-S12; small subunit ribosomal protein S12
D SO_0253 rpsM; 30S ribosomal protein S13 RpsM K02952 RP-S13; small subunit ribosomal protein S13
D SO_0244 rpsN; 30S ribosomal protein S14 RpsN K02954 RP-S14; small subunit ribosomal protein S14
D SO_1207 rpsO; 30S ribosomal protein S15 RpsO K02956 RP-S15; small subunit ribosomal protein S15
D SO_1357 rpsP; 30S ribosomal protein S16 RpsP K02959 RP-S16; small subunit ribosomal protein S16
D SO_0240 rpsQ; 30S ribosomal protein S17 RpsQ K02961 RP-S17; small subunit ribosomal protein S17
D SO_3928 rpsR; 30S ribosomal protein S18 RpsR K02963 RP-S18; small subunit ribosomal protein S18
D SO_0235 rpsS; 30S ribosomal protein S19 RpsS K02965 RP-S19; small subunit ribosomal protein S19
D SO_3537 rpsT; 30S ribosomal protein S20 RpsT K02968 RP-S20; small subunit ribosomal protein S20
D SO_1288 rpsU; 30S ribosomal protein S21 RpsU K02970 RP-S21; small subunit ribosomal protein S21
D SO_0221 rplA; 50S ribosomal protein L1 RplA K02863 RP-L1; large subunit ribosomal protein L1
D SO_0234 rplB; 50S ribosomal protein L2 RplB K02886 RP-L2; large subunit ribosomal protein L2
D SO_0231 rplC; 50S ribosomal protein L3 RplC K02906 RP-L3; large subunit ribosomal protein L3
D SO_0232 rplD; 50S ribosomal protein L4 RplD K02926 RP-L4; large subunit ribosomal protein L4
D SO_0243 rplE; 50S ribosomal protein L5 RplE K02931 RP-L5; large subunit ribosomal protein L5
D SO_0246 rplF; 50S ribosomal protein L6 RplF K02933 RP-L6; large subunit ribosomal protein L6
D SO_0223 rplL; 50S ribosomal protein L7/L12 RplL K02935 RP-L7; large subunit ribosomal protein L7/L12
D SO_3927 rplI; 50S ribosomal protein L9 RplI K02939 RP-L9; large subunit ribosomal protein L9
D SO_0222 rplJ; 50S ribosomal protein L10 RplJ K02864 RP-L10; large subunit ribosomal protein L10
D SO_0220 rplK; 50S ribosomal protein L11 RplK K02867 RP-L11; large subunit ribosomal protein L11
D SO_3940 rplM; 50S ribosomal protein L13 RplM K02871 RP-L13; large subunit ribosomal protein L13
D SO_0241 rplN; 50S ribosomal protein L14 RplN K02874 RP-L14; large subunit ribosomal protein L14
D SO_0250 rplO; 50S ribosomal protein L15 RplO K02876 RP-L15; large subunit ribosomal protein L15
D SO_0238 rplP; 50S ribosomal protein L16 RplP K02878 RP-L16; large subunit ribosomal protein L16
D SO_0257 rplQ; 50S ribosomal protein L17 RplQ K02879 RP-L17; large subunit ribosomal protein L17
D SO_0247 rplR; 50S ribosomal protein L18 RplR K02881 RP-L18; large subunit ribosomal protein L18
D SO_1360 rplS; 50S ribosomal protein L19 RplS K02884 RP-L19; large subunit ribosomal protein L19
D SO_2302 rplT; 50S ribosomal protein L20 RplT K02887 RP-L20; large subunit ribosomal protein L20
D SO_3652 rplU; 50S ribosomal protein L21 RplU K02888 RP-L21; large subunit ribosomal protein L21
D SO_0236 rplV; 50S ribosomal protein L22 RplV K02890 RP-L22; large subunit ribosomal protein L22
D SO_0233 rplW; 50S ribosomal protein L23 RplW K02892 RP-L23; large subunit ribosomal protein L23
D SO_0242 rplX; 50S ribosomal protein L24 RplX K02895 RP-L24; large subunit ribosomal protein L24
D SO_2112 rplY; 50S ribosomal protein L25 RplY K02897 RP-L25; large subunit ribosomal protein L25
D SO_3651 rpmA; 50S ribosomal protein L27 RpmA K02899 RP-L27; large subunit ribosomal protein L27
D SO_4247 rpmB; 50S ribosomal protein L28 RpmB K02902 RP-L28; large subunit ribosomal protein L28
D SO_0239 rpmC; 50S ribosomal protein L29 RpmC K02904 RP-L29; large subunit ribosomal protein L29
D SO_0249 rpmD; 50S ribosomal protein L30 RpmD K02907 RP-L30; large subunit ribosomal protein L30
D SO_4120 rpmE; 50S ribosomal protein L31 RpmE K02909 RP-L31; large subunit ribosomal protein L31
D SO_2780 rpmF; 50S ribosomal protein L32 RpmF K02911 RP-L32; large subunit ribosomal protein L32
D SO_4246 rpmG; 50S ribosomal protein L33 RpmG K02913 RP-L33; large subunit ribosomal protein L33
D SO_0007 rpmH; 50S ribosomal protein L34 RpmH K02914 RP-L34; large subunit ribosomal protein L34
D SO_2301 rpmI; 50S ribosomal protein L35 RpmI K02916 RP-L35; large subunit ribosomal protein L35
D SO_0252 rpmJ; 50S ribosomal protein L36 RpmJ K02919 RP-L36; large subunit ribosomal protein L36
D SO_r001 rrsA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SO_r004 rrsB; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SO_r007 rrsC; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SO_r012 rrsD; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SO_r015 rrsE; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SO_r018 rrsF; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SO_r021 rrsG; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SO_r024 rrsH; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SO_r027 rrsI; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SO_r002 rrlA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SO_r005 rrlB; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SO_r008 rrlC; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SO_r011 rrlD; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SO_r014 rrlE; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SO_r017 rrlF; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SO_r020 rrlG; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SO_r023 rrlH; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SO_r026 rrlI; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SO_r003 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SO_r006 rrfB; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SO_r009 rrfC; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SO_r010 rrfD; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SO_r013 rrfE; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SO_r016 rrfF; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SO_r019 rrfJ; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SO_r022 rrfH; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SO_r025 rrfI; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SO_r028 rrfG; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:son00970]
D SO_t004 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D SO_t095 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D SO_t063 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D SO_t070 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D SO_t072 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D SO_t100 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SO_t078 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SO_t025 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SO_t083 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SO_t089 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SO_t087 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SO_t085 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SO_t088 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SO_t086 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SO_t048 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D SO_t049 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D SO_t050 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D SO_t051 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D SO_t052 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D SO_t001 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D SO_t102 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D SO_t053 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D SO_t054 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D SO_t034 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D SO_t042 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D SO_t016 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D SO_t017 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D SO_t020 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D SO_t065 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D SO_t067 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D SO_t071 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D SO_t068 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D SO_t069 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D SO_t066 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D SO_t009 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D SO_t011 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D SO_t012 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D SO_t033 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D SO_t010 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D SO_t041 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D SO_t007 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D SO_t026 tRNA-His K14226 tRNA-His; tRNA His
D SO_t099 tRNA-His K14226 tRNA-His; tRNA His
D SO_t003 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D SO_t096 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D SO_t064 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D SO_t021 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SO_t015 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SO_t019 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SO_t094 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SO_t092 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SO_t093 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SO_t035 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SO_t036 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SO_t043 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SO_t055 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D SO_t056 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D SO_t058 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D SO_t059 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D SO_t061 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D SO_t062 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D SO_t057 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D SO_t014 tRNA-Met K14230 tRNA-Met; tRNA Met
D SO_t018 tRNA-Met K14230 tRNA-Met; tRNA Met
D SO_t023 tRNA-Met K14230 tRNA-Met; tRNA Met
D SO_t022 tRNA-Met K14230 tRNA-Met; tRNA Met
D SO_t027 tRNA-Met K14230 tRNA-Met; tRNA Met
D SO_t028 tRNA-Met K14230 tRNA-Met; tRNA Met
D SO_t029 tRNA-Met K14230 tRNA-Met; tRNA Met
D SO_t030 tRNA-Met K14230 tRNA-Met; tRNA Met
D SO_t079 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D SO_t081 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D SO_t091 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D SO_t024 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D SO_t098 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D SO_t097 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D SO_t037 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D SO_t031 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D SO_t032 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D SO_t044 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D SO_t084 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D SO_t090 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D SO_t038 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D SO_t101 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D SO_t008 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D SO_t005 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D SO_t080 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D SO_t082 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D SO_t013 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D SO_t006 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D SO_t046 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D SO_t045 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D SO_t047 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D SO_t074 tRNA-Val K14237 tRNA-Val; tRNA Val
D SO_t076 tRNA-Val K14237 tRNA-Val; tRNA Val
D SO_t075 tRNA-Val K14237 tRNA-Val; tRNA Val
D SO_t077 tRNA-Val K14237 tRNA-Val; tRNA Val
D SO_t073 tRNA-Val K14237 tRNA-Val; tRNA Val
D SO_t039 tRNA-Val K14237 tRNA-Val; tRNA Val
D SO_t040 tRNA-Val K14237 tRNA-Val; tRNA Val
D SO_t002 tRNA-Sec K14238 tRNA-Sec; tRNA Sec
D SO_3130 gltX; glutamyl-tRNA synthetase GltX K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D SO_1786 glnS; glutaminyl-tRNA synthetase GlnS K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D SO_3428 alaS; alanyl-tRNA synthetase AlaS K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D SO_2433 aspS; aspartyl-tRNA synthetase AspS K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D SO_2218 asnS; asparaginyl-tRNA synthetase AsnS K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D SO_0015 glyQ; glycyl-tRNA synthetase alpha subunit GlyQ K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D SO_0014 glyS; glycyl-tRNA synthetase beta subunit GlyS K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D SO_2299 thrS; threonyl-tRNA synthetase ThrS K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D SO_2310 serS; seryl-tRNA synthetase SerS K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D SO_0105 selA; L-seryl-tRNA selenium transferase SelA K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D SO_1791 cysS; cysteinyl-tRNA synthetase CysS K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D SO_2619 metG; methionyl-tRNA synthetase MetG K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D SO_0031 fmt; methionyl-tRNA formyltransferase Fmt K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D SO_3424 valS; valyl-tRNA synthetase ValS K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D SO_1174 leuS; leucyl-tRNA synthetase LeuS K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D SO_3532 ileS; isoleucyl-tRNA synthetase IleS K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D SO_0992 lysS; lysyl-tRNA synthetase LysS K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D SO_4123 argS; arginyl-tRNA synthetase ArgS K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D SO_3154 proS; prolyl-tRNA synthetase ProS K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D SO_3311 hisS; histidyl-tRNA synthetase HisS K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D SO_2085 pheS; phenylalanyl-tRNA synthetase alpha subunit PheS K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D SO_2086 pheT; phenylalanyl-tRNA synthetase beta subunit PheT K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D SO_1315 tyrS; tyrosyl-tRNA synthetase TyrS K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D SO_0294 trpS; tryptophanyl-tRNA synthetase TrpS K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:son03060]
D SO_0251 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D SO_0218 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D SO_1201 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D SO_1193 secD; preprotein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D SO_3111 secD; preprotein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D SO_1194 secF; preprotein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D SO_3110 secF; preprotein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D SO_3112 yajC; SecDF preprotein translocase-associated protein YajC K03210 yajC; preprotein translocase subunit YajC
D SO_0004 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D SO_4211 secA; preprotein translocase ATPase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D SO_0052 secB; protein export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D SO_1356 ffh; signal recognition particle protein Ffh K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D SO_m005 ffs; RNA component of signal recognition particle K01983 ffs; SRP RNA
D SO_4586 ftsY; signal recognition particle docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D SO_4202 tatA; twin arginine protein translocase system protein TatA K03116 tatA; sec-independent protein translocase protein TatA
D SO_4203 tatB; twin arginine protein translocase system protein TatB K03117 tatB; sec-independent protein translocase protein TatB
D SO_4204 tatC; twin arginine protein translocase system protein TatC K03118 tatC; sec-independent protein translocase protein TatC
D SO_1347 lepB; signal peptidase I LepB K03100 lepB; signal peptidase I [EC:3.4.21.89]
D SO_2924 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D SO_3531 lspA; signal peptidase II LspA K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:son04122]
D SO_2264 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D SO_1261 sseA; mercaptopyruvate sulfurtransferase SseA K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D SO_0019 tusA; tRNA 2-thiouridine synthesizing protein TusA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D SO_2868 SirA-like protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D SO_2378 tusB; tRNA 2-thiouridine synthesizing protein B subunit TusB K07237 tusB; tRNA 2-thiouridine synthesizing protein B
D SO_2377 tusC; tRNA 2-thiouridine synthesizing protein C subunit TusC K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D SO_2376 tusD; tRNA 2-thiouridine synthesizing protein D subunit TusD K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D SO_2379 tusE; tRNA 2-thiouridine synthesizing protein sulfur mediator TusE K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D SO_2633 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D SO_4449 moaE; molybdenum cofactor biosynthesis protein E MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D SO_4724 moaA; tungsten cofactor biosynthesis protein MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D SO_4452 moaA; molybdenum cofactor biosynthesis protein A MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D SO_4450 moaD; molybdenum cofactor biosynthesis protein D MoaD K03636 moaD; sulfur-carrier protein
D SO_0137 moeB; molybdopterin/tungstopterin synthase sulfurylase MoeB K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]
D SO_4451 moaC; molybdenum cofactor biosynthesis protein C MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D SO_0065 mogA; molybdenum cofactor biosynthesis protein MogA K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D SO_1531 thiI; thiazole biosynthesis/tRNA modification proteinThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D SO_2442 thiS; sulphur carrier protein ThiS K03154 thiS; sulfur carrier protein
D SO_2443 thiF; adenylyltransferase ThiF K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73]
C 03050 Proteasome
C 03018 RNA degradation [PATH:son03018]
D SO_1331 rppH; RNA pyrophosphohydrolase RppH K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D SO_2785 rne; ribonuclease E Rne K08300 rne; ribonuclease E [EC:3.1.26.12]
D SO_0407 rhlB; ATP-dependent RNA helicase RhlB K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
D SO_3440 eno; enolase Eno K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D SO_1209 pnpA; polyribonucleotide nucleotidyltransferase PnpA K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D SO_3783 rhlE; ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D SO_1501 ATP-dependent RNA helicase DEAD box family K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D SO_2571 ATP-dependent RNA helicase DEAD box family K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D SO_3125 ATP-dependent RNA helicase DEAD box family K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D SO_1383 ATP-dependent RNA helicase DEAD box family K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D SO_3388 ATP-dependent RNA helicase DEAD box family K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D SO_3935 rnr; 3'-5' exoribonuclease R Rnr K12573 rnr; ribonuclease R [EC:3.1.13.1]
D SO_4034 deaD; ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D SO_4241 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D SO_2380 ATP-dependent DNA helicase RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D SO_0405 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D SO_1126 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D SO_0704 groEL; 60 kDa chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D SO_0603 hfq; RNA-binding pleiotrophic regulator Hfq K03666 hfq; host factor-I protein
D SO_0872 pcnB; polyA polymerase PcnB K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:son03030]
D SO_2245 exonuclease family protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D SO_2559 dnaQ; DNA polymerase III epsilon subunit DnaQ K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D SO_2855 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D SO_1644 dnaE; DNA polymerase III alpha subunit DnaE K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D SO_2013 dnaX; DNA polymerase III gamma and tau subunits DnaX K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D SO_2612 holB; DNA polymerase III delta' subunit HolB K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D SO_1172 holA; DNA polymerase III delta subunit HolA K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D SO_3423 holC; DNA polymerase III chi subunit HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D SO_0009 dnaN; DNA polymerase III beta subunit DnaN K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D SO_3917 dnaB; replicative DNA helicase DnaB K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D SO_1286 dnaG; DNA primase DnaG K02316 dnaG; DNA primase [EC:2.7.7.101]
D SO_4028 ssb; single-strand binding protein Ssb K03111 ssb; single-strand DNA-binding protein
D SO_2560 rnhA; ribonuclease HI RnhA K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D SO_1643 rnhB; ribonuclease HII RnhB K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D SO_4669 polA; DNA polymerase I PolA K02335 polA; DNA polymerase I [EC:2.7.7.7]
D SO_2896 ligA; DNA ligase NAD-dependent LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:son03410]
D SO_2514 nth; endonuclease III Nth K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D SO_3654 ung; uracil-DNA glycosylase Ung K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D SO_3368 mutY; adenine glycosylase MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D SO_4726 mutM; formamidopyrimidine-DNA glycosylase MutM K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D SO_3127 multifunctional transcriptional regulator of DNA repair AraC family/DNA glycosylase / 8-oxoguanine DNA glycosylase K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D SO_0016 tag; DNA-3-methyladenine glycosylase I Tag K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D SO_3037 xth; exodeoxyribonuclease III Xth K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D SO_4669 polA; DNA polymerase I PolA K02335 polA; DNA polymerase I [EC:2.7.7.7]
D SO_0952 recJ; 5'-3' ssDNA exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D SO_2896 ligA; DNA ligase NAD-dependent LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:son03420]
D SO_2255 mfd; transcription-repair coupling factor Mfd K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D SO_4030 uvrA; excinuclease ABC A subunit UvrA K03701 uvrA; excinuclease ABC subunit A
D SO_2506 uvrB; excinuclease ABC B subunit UvrB K03702 uvrB; excinuclease ABC subunit B
D SO_1861 uvrC; excinuclease ABC C subunit UvrC K03703 uvrC; excinuclease ABC subunit C
D SO_0467 uvrD; DNA helicase II UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D SO_4669 polA; DNA polymerase I PolA K02335 polA; DNA polymerase I [EC:2.7.7.7]
D SO_2896 ligA; DNA ligase NAD-dependent LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:son03430]
D SO_3431 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D SO_0601 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D SO_1330 mutH; DNA mismatch repair endonuclease MutH K03573 mutH; DNA mismatch repair protein MutH
D SO_0467 uvrD; DNA helicase II UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D SO_2790 sbcB; exodeoxyribonuclease I SbcB K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D SO_3294 xseA; exodeoxyribonuclease VII large subunit XseA K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D SO_1527 xseB; exodeoxyribonuclease VII small subunit XseB K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D SO_0952 recJ; 5'-3' ssDNA exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D SO_4028 ssb; single-strand binding protein Ssb K03111 ssb; single-strand DNA-binding protein
D SO_1644 dnaE; DNA polymerase III alpha subunit DnaE K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D SO_0009 dnaN; DNA polymerase III beta subunit DnaN K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D SO_2013 dnaX; DNA polymerase III gamma and tau subunits DnaX K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D SO_1172 holA; DNA polymerase III delta subunit HolA K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D SO_2612 holB; DNA polymerase III delta' subunit HolB K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D SO_2245 exonuclease family protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D SO_2559 dnaQ; DNA polymerase III epsilon subunit DnaQ K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D SO_2855 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D SO_3423 holC; DNA polymerase III chi subunit HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D SO_2896 ligA; DNA ligase NAD-dependent LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D SO_0289 dam; N6-adenine DNA methyltransferase Dam K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D SO_0690 Mu phage DNA adenine methylase Dam family K06223 dam; DNA adenine methylase [EC:2.1.1.72]
C 03440 Homologous recombination [PATH:son03440]
D SO_0952 recJ; 5'-3' ssDNA exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D SO_4028 ssb; single-strand binding protein Ssb K03111 ssb; single-strand DNA-binding protein
D SO_0010 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
D SO_1350 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D SO_2015 recR; recombination protein RecR K06187 recR; recombination protein RecR
D SO_3430 recA; recombinase A RecA K03553 recA; recombination protein RecA
D SO_4669 polA; DNA polymerase I PolA K02335 polA; DNA polymerase I [EC:2.7.7.7]
D SO_2430 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D SO_2429 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D SO_2431 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D SO_4364 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D SO_2148 recB; exodeoxyribonuclease V beta subunit RecB K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D SO_2149 recC; exodeoxyribonuclease V gamma subunit RecC K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D SO_2147 recD; exodeoxyribonuclease V alpha subunit RecD K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D SO_1644 dnaE; DNA polymerase III alpha subunit DnaE K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D SO_0009 dnaN; DNA polymerase III beta subunit DnaN K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D SO_2013 dnaX; DNA polymerase III gamma and tau subunits DnaX K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D SO_1172 holA; DNA polymerase III delta subunit HolA K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D SO_2612 holB; DNA polymerase III delta' subunit HolB K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D SO_2245 exonuclease family protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D SO_2559 dnaQ; DNA polymerase III epsilon subunit DnaQ K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D SO_2855 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D SO_3423 holC; DNA polymerase III chi subunit HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D SO_4122 priA; primosomal replication protein N' PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D SO_3929 priB; primosomal replication protein N PriB K02686 priB; primosomal replication protein N
D SO_1817 primosomal replication protein N'-like protein K04067 priC; primosomal replication protein N''
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1 [PATH:son03250]
D SO_3812 ppiA; periplasmic peptidyl-prolyl cis-trans isomerase PpiA K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus and Lyssavirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:son02010]
D SO_3599 cysP; ABC-type sulfate/thiosulfate uptake system substrate-binding component CysP K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein
D SO_4652 sbp; ABC-type sulfate/thiosulfate uptakesystem substrate-binding subunit Sbp K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D SO_4653 cysT; ABC-type sulfate/thiosulfate uptakesystem permease component 1 CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D SO_3600 cysT; ABC-type sulfate/thiosulfate uptake system permease component 1 CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D SO_4654 cysW; ABC-type sulfate/thiosulfate uptakesystem permease component 2 CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D SO_3601 cysW; ABC-type sulfate/thiosulfate uptake system permease component 2 CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D SO_4655 cysA; ABC-type sulfate/thiosulfate uptakesystem ATPase component CysA K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D SO_3602 cysA; ABC-type sulfate/thiosulfate uptake system ATPase component CysA K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D SO_4719 tupA; ABC-type tungstate uptake system substrate-binding component TupA K05772 tupA; tungstate transport system substrate-binding protein
D SO_4720 tupB; ABC-type tungstate uptake system permease component TupB K05773 tupB; tungstate transport system permease protein
D SO_4721 tupC; ABC-type tungstate uptake system ATPase componet TupC K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6]
D SO_4448 modA; ABC-type molybdate uptake system substrate-binding component ModA K02020 modA; molybdate transport system substrate-binding protein
D SO_3863 modA; ABC-type molybdate uptake system substrate-binding component ModA K02020 modA; molybdate transport system substrate-binding protein
D SO_3967 orphan ABC-type transport system substrate-binding component K02020 modA; molybdate transport system substrate-binding protein
D SO_4447 modB; ABC-type molybdate uptake system permease component ModB K02018 modB; molybdate transport system permease protein
D SO_3864 modB; ABC-type molybdate uptake system permease component ModB K02018 modB; molybdate transport system permease protein
D SO_3865 modC; ABC-type molybdate uptake system ATPase component ModC K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D SO_4446 modC; ABC-type molybdate uptake system ATPase component ModC K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D SO_0726 phrA; photoreactivation-associated protein PhrA K05776 modF; molybdate transport system ATP-binding protein
D SO_0744 fbpA; ABC-type Fe3+ uptake system substrate-binding component FbpA K02012 afuA; iron(III) transport system substrate-binding protein
D SO_0743 fbpB; ABC-type Fe3+ uptake system permease component FbpB K02011 afuB; iron(III) transport system permease protein
D SO_0742 fbpC; ABC-type Fe3+ uptake system ATPase component FbpC K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D SO_1270 potF; ABC-type putrescine uptake system substrate-binding component PotF K11073 potF; putrescine transport system substrate-binding protein
D SO_1273 potI; ABC-type putrescine uptake system permease component 2 PotI K11074 potI; putrescine transport system permease protein
D SO_1272 potH; ABC-type putrescine uptake system permease component 1 PotH K11075 potH; putrescine transport system permease protein
D SO_1271 potG; ABC-type putrescine uptake system ATPase component PotG K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16]
D SO_1959 solute-binding protein K02002 proX; glycine betaine/proline transport system substrate-binding protein
D SO_3951 mlaC; ABC-type phospholipid uptake (salvage) system periplasmic chaperone MlaC K07323 mlaC; phospholipid transport system substrate-binding protein
D SO_3952 mlaD; ABC-type phospholipid uptake (salvage) system substrate-binding component MlaD K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D SO_3953 mlaE; ABC-type phospholipid uptake (salvage) system permease component MlaE K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D SO_3950 mlaB; ABC-type phospholipid uptake (salvage) system anti-anti-sigma factor MlaB K07122 mlaB; phospholipid transport system transporter-binding protein
D SO_3954 mlaF; ABC-type phospholipid uptake (salvage) system ATPase component MlaF K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D SO_3714 ABC-type monosaccharide transport system substrate binding component K10439 rbsB; ribose transport system substrate-binding protein
D SO_1560 pstS; ABC-type phosphate uptake system substrate-binding component PstS K02040 pstS; phosphate transport system substrate-binding protein
D SO_4292 pstS; ABC-type phosphate uptake system substrate-binding component PstS K02040 pstS; phosphate transport system substrate-binding protein
D SO_1723 pstC; ABC-type high affinity phosphate uptake system permease component PstC K02037 pstC; phosphate transport system permease protein
D SO_4291 pstC; ABC-type phosphate uptake system permease component PstC K02037 pstC; phosphate transport system permease protein
D SO_1724 pstA; ABC-type high affinity phosphate uptake system permease component PstA K02038 pstA; phosphate transport system permease protein
D SO_4290 pstA; ABC-type phosphate uptake system permease component PstA K02038 pstA; phosphate transport system permease protein
D SO_1725 pstB; ABC-type high affinity phosphate uptake system ATPase component PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D SO_4289 pstB; ABC-type phosphate uptake system permease ATPase component PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D SO_1044 artI; ABC-type arginine uptakesystem substrate-binding component ArtI K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein
D SO_1043 artQ; ABC-type arginine uptakesystem permease component ArtQ K17077 artQ; arginine/lysine/histidine transport system permease protein
D SO_1042 artM; ABC-type arginine uptakesystem ATPase component ArtM K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1]
D SO_1805 sapA; ABC-type peptide uptake system substrate-binding component SapA K19226 sapA; cationic peptide transport system substrate-binding protein
D SO_1804 sapB; ABC-type peptide uptake system permease component 1 SapB K19227 sapB; cationic peptide transport system permease protein
D SO_1803 sapC; ABC-type peptide uptake system permease component 2 SapC K19228 sapC; cationic peptide transport system permease protein
D SO_1802 sapD; ABC-type peptide uptake system ATPase component 1 SapD K19229 sapD; cationic peptide transport system ATP-binding protein
D SO_1801 sapF; ABC-type peptide uptake system ATPase component 2 SapF K19230 sapF; cationic peptide transport system ATP-binding protein
D SO_3709 btuF; ABC-type cobalamin uptake system substrate-binding component BtuF K06858 btuF; vitamin B12 transport system substrate-binding protein
D SO_0069 natB; ABC-type sodium efflux system permease component NatB K09696 natB; sodium transport system permease protein
D SO_0070 natA; ABC-type sodium efflux system ATPase component NatA K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4]
D SO_2257 lolE; ABC-type lipoprotein release system permease component LolE K09808 lolC_E; lipoprotein-releasing system permease protein
D SO_2259 lolC; ABC-type lipoprotein release system permease component LolC K09808 lolC_E; lipoprotein-releasing system permease protein
D SO_2258 lolD; ABC-type lipoprotein release system ATPase component LolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D SO_0260 ccmD; ABC-type heme export system CcmE-interacting component CcmD K02196 ccmD; heme exporter protein D
D SO_0261 ccmC; ABC-type heme export system permease component 2 CcmC K02195 ccmC; heme exporter protein C
D SO_0262 ccmB; ABC-type heme export system permease component 1 CcmB K02194 ccmB; heme exporter protein B
D SO_0263 ccmA; ABC-type heme export system ATPase component CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D SO_1369 lptF; ABC-type lipopolysaccharide export system permease component 1 LptF K07091 lptF; lipopolysaccharide export system permease protein
D SO_1370 lptG; ABC-type lipopolysaccharide export system permease component 2 LptG K11720 lptG; lipopolysaccharide export system permease protein
D SO_3960 lptB; ABC-type lipopolysaccharide export system ATPase component LptB K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D SO_0488 nosY; ABC-type copper transport system permease component NosY K19341 nosY; Cu-processing system permease protein
D SO_0487 nosF; ABC-type copper transport system ATPase component NosF K19340 nosF; Cu-processing system ATP-binding protein
D SO_4584 ftsX; ABC-type cell division-associated export system permease component FtsX K09811 ftsX; cell division transport system permease protein
D SO_4585 ftsE; ABC-type cell division-associated export system ATPase component FtsE K09812 ftsE; cell division transport system ATP-binding protein
D SO_2802 msbA; ABC-type lipid A export system bifunctional ATPase and permease components MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D SO_A0049 ABC-type bacteriocin export system multifunctional permease/ATPase/protease component K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB
D SO_0754 atmA; ABC-type Ni2+/Co2+ export system bifunctional ATPase and permease components AtmA K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter
D SO_3128 ABC-type metal export system bifunctional ATPase and permease component K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump
D SO_4318 aggC; type I protein secretion system bifunctional ATPase and permease component AggC K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D SO_4147 type I secretion system ATPase and inner membrane subunit HlyB family K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D SO_4146 type I secretion system ATPase subunit HlyB family K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D SO_3779 cydC; ABC-type cysteine/glutathione export system bifunctional ATPase and permease component CydC K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D SO_3780 cydD; ABC-type cysteine/glutathione export system bifunctional ATPase and permease components CydD K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D SO_0821 macB; ABC-type macrolide export system bifunctional ATPase and permease component MacB K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
C 02060 Phosphotransferase system (PTS) [PATH:son02060]
D SO_2237 ptsI; phosphotransferase system (PTS) phosphoenolpyruvate-protein phosphotransferase PtsI K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D SO_2238 ptsH; phosphotransferase system (PTS) phosphocarrier protein HPr PtsH K02784 ptsH; phosphocarrier protein HPr
D SO_2236 crr; phosphotransferase system (PTS) glucose-specific IIA component Crr K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D SO_1623 ptsG; phosphotransferase system (PTS) glucose-specific IIBC component PtsG K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199]
D SO_1332 ptsP; phosphotransferase system (PTS) enzyme I PtsP K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
D SO_3965 ptsO; phosphotransferase system (PTS) phosphohisitinoprotein-hexose phosphotransferase comonent PtsO K08485 ptsO; phosphocarrier protein NPr
D SO_3963 ptsN; phosphotransferase system (PTS) sugar-specific IIA component PtsN K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
C 03070 Bacterial secretion system [PATH:son03070]
D SO_3904 tolC; global secretion system secretin TolC K12340 tolC; outer membrane protein
D SO_0166 gspD; T2aSS secretion system secretin GspD K02453 gspD; general secretion pathway protein D
D SO_0165 gspC; T2aSS secretion system protein GspC K02452 gspC; general secretion pathway protein C
D SO_0168 gspF; T2aSS secretion system inner membrane platform protein GspF K02455 gspF; general secretion pathway protein F
D SO_0169 gspG; T2aSS secretion system pseudopilus protein GspG K02456 gspG; general secretion pathway protein G
D SO_0170 gspH; T2aSS secretion system pseudopilus protein GspH K02457 gspH; general secretion pathway protein H
D SO_0171 gspI; T2aSS secretion system pseudopilus protein GspI K02458 gspI; general secretion pathway protein I
D SO_0172 gspJ; T2aSS secretion system protein GspJ K02459 gspJ; general secretion pathway protein J
D SO_0173 gspK; T2aSS secretion system pseudopilus protein GspK K02460 gspK; general secretion pathway protein K
D SO_0174 gspL; T2aSSsecretion system inner membrane platform protein GspL K02461 gspL; general secretion pathway protein L
D SO_0175 gspM; T2aSS secretion system inner membrane platform protein GspM K02462 gspM; general secretion pathway protein M
D SO_0167 gspE; T2aSS secretion system assembly ATPase GspE K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D SO_1193 secD; preprotein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D SO_3111 secD; preprotein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D SO_1194 secF; preprotein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D SO_3110 secF; preprotein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D SO_0218 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D SO_1201 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D SO_0251 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D SO_3112 yajC; SecDF preprotein translocase-associated protein YajC K03210 yajC; preprotein translocase subunit YajC
D SO_0004 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D SO_4211 secA; preprotein translocase ATPase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D SO_4586 ftsY; signal recognition particle docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D SO_0052 secB; protein export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D SO_1356 ffh; signal recognition particle protein Ffh K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D SO_4202 tatA; twin arginine protein translocase system protein TatA K03116 tatA; sec-independent protein translocase protein TatA
D SO_4203 tatB; twin arginine protein translocase system protein TatB K03117 tatB; sec-independent protein translocase protein TatB
D SO_4204 tatC; twin arginine protein translocase system protein TatC K03118 tatC; sec-independent protein translocase protein TatC
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:son02020]
D SO_1559 phoR; phosphate-responsive two component signal transduction system histidine kinase with PAS and DUF3329 domains PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D SO_1558 phoB; phosphate-responsive two component signal transduction system response regulator PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D SO_0830 phoA; periplasmic alkaline phosphatase PhoA K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D SO_0806 phoD; Ca(2+)-dependent phospholipase D PhoD K01113 phoD; alkaline phosphatase D [EC:3.1.3.1]
D SO_1560 pstS; ABC-type phosphate uptake system substrate-binding component PstS K02040 pstS; phosphate transport system substrate-binding protein
D SO_4292 pstS; ABC-type phosphate uptake system substrate-binding component PstS K02040 pstS; phosphate transport system substrate-binding protein
D SO_1945 phoQ; two component signal transduction system histidine kinase PhoQ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D SO_4648 two component signal transduction system histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D SO_1946 phoP; two component signal transduction system response regulator PhoP K07660 phoP; two-component system, OmpR family, response regulator PhoP
D SO_4647 two component signal transduction system response regulator OmpR family K07660 phoP; two-component system, OmpR family, response regulator PhoP
D SO_4634 envZ; osmolarity-responsive two component signal transduction system histidine kinase EnvZ K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D SO_4633 ompR; osmolarity-responsive two component signal transduction system response regulator OmpR K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D SO_1821 outer membrane porin K09476 ompF; outer membrane pore protein F
D SO_4478 cpxA; periplasmic stress-responsive two component signal transduction system histidine kinase CpxA K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D SO_4477 cpxR; periplasmic stress-responsive two component signal transduction system response regulator CpxR K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D SO_4597 cusB; copper/silver efflux pump MFP component CusB K07798 cusB; membrane fusion protein, copper/silver efflux system
D SO_A0154 cusB; copper/silver efflux pump MFP component CusB K07798 cusB; membrane fusion protein, copper/silver efflux system
D SO_A0153 cusA; copper/silver efflux pump permease component CusA K07787 cusA; copper/silver efflux system protein
D SO_4598 cusA; copper/silver efflux pump permease component CusA K07787 cusA; copper/silver efflux system protein
D SO_2105 qseC; AI-3-responsive two component signal transduction system histidine kinase QseC K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
D SO_2104 qseB; AI-3-responsive two component signal transduction system response regulator QseB K07666 qseB; two-component system, OmpR family, response regulator QseB
D SO_3237 fliC; flagellin FliC K02406 fliC; flagellin
D SO_3238 fliC; flagellin FliC K02406 fliC; flagellin
D SO_3210 fliA; RNA polymerase sigma-28 factor for flagellar operon FliA K02405 fliA; RNA polymerase sigma factor FliA
D SO_1529 pomA; stator-force generator of Na+ coupled flagellar motor PomA K02556 motA; chemotaxis protein MotA
D SO_4287 motA; stator-force generator of H+ coupled flagellar motor MotA K02556 motA; chemotaxis protein MotA
D SO_0059 kdpE; two component signal transduction system controlling the osmosenstive K+ channel response regulator KdpE K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D SO_1230 torS; TMAO-responsive two component signal transduction system hybrid histidine kinase/response regulator TorS K07647 torS; two-component system, OmpR family, sensor histidine kinase TorS [EC:2.7.13.3]
D SO_1228 torR; TMAO-responsive two component signal transduction system response regulator TorR K07772 torR; two-component system, OmpR family, torCAD operon response regulator TorR
D SO_1233 torC; trimethylamine N-oxide reductase membrane anchored cytochrome c component TorC K03532 torC; trimethylamine-N-oxide reductase (cytochrome c), cytochrome c-type subunit TorC
D SO_1232 torA; trimethylamine-N-oxide reductase TorA K07811 torA; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D SO_1231 torD; TorA-specific chaperone TorD K03533 torD; TorA specific chaperone
D SO_3988 arcA; two component signal transduction system controlling aerobic respiration response regulator ArcA K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA
D SO_4613 ctaA; heme A synthase CtaA K02259 COX15; heme a synthase [EC:1.17.99.9]
D SO_0008 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D SO_4417 dcuB; anaerobic C4-dicarboxylate transporter DcuB K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D SO_3855 sfcA; NAD-dependent malate dehydrogenase (oxaloacetate-decarboxylating) SfcA K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D SO_0070 natA; ABC-type sodium efflux system ATPase component NatA K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4]
D SO_0069 natB; ABC-type sodium efflux system permease component NatB K09696 natB; sodium transport system permease protein
D SO_3981 narQ; nitrate/nitrite-responsive two component signal transduction system histidine kinase NarQ K07674 narQ; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarQ [EC:2.7.13.3]
D SO_3982 narP; nitrate/nitrite-responsive two component signal transduction system response regulator NarP K07685 narP; two-component system, NarL family, nitrate/nitrite response regulator NarP
D SO_0101 fdnG; nitrate-inducible formate dehydrogenase molybdopterin-binding subunit FdnG K08348 fdnG; formate dehydrogenase-N, alpha subunit [EC:1.17.5.3]
D SO_3150 rcsF; outer membrane RCS phosphorelay signaling cascade trigger RcsF K06080 rcsF; RcsF protein
D SO_4444 rcsB; two component signal transduction system response regulator of capsule flagella and curli biosynthesis RcsB K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB
D SO_3457 barA; two component signal transduction system hybrid histidine kinase/response regulator with DUF2222 and Hpt domains BarA K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D SO_1860 uvrY; two component signal transduction system response regulator UvrY K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D SO_3426 csrA; carbon storage regulator CsrA K03563 csrA; carbon storage regulator
D SO_2388 ampC; class C beta-lactamase AmpC K01467 ampC; beta-lactamase class C [EC:3.5.2.6]
D SO_0352 two component signal transduction system histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3]
D SO_0351 two component signal transduction system response regulator LuxR family K07693 desR; two-component system, NarL family, response regulator DesR
D SO_1626 glnD; protein-P-II uridylyltransferase GlnD K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]
D SO_3519 glnB; regulatory protein for nitrogen assimilation by glutamine synthetase GlnB K04751 glnB; nitrogen regulatory protein P-II 1
D SO_4471 glnL; nitrogen-responsive two component signal transduction system histidine kinase with PAS sensory domain GlnL K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D SO_4472 glnG; nitrogen-responsive two component signal transduction system Sigma54-dependent response regulator GlnG K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D SO_1268 puuA; gamma-glutamyl-putrescine synthase PuuA K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D SO_4410 glnA; glutamine synthetase GlnA K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D SO_1391 atoE; short chain fatty acids transporter AtoE K02106 atoE; short-chain fatty acids transporter
D SO_1677 ivdA; 3-ketoacyl-CoA thiolase IvdA K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D SO_3138 dctD; C4-dicarboxylate-responsive two component Sigma54-dependent signal transduction system response regulator DctD K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD
D SO_3961 rpoN; RNA polymerase sigma-54 factor RpoN K03092 rpoN; RNA polymerase sigma-54 factor
D SO_0417 pilA; type IV pilin protein PilA K02650 pilA; type IV pilus assembly protein PilA
D SO_2097 hyaC; periplasmic [Ni-Fe] hydrogenase cytochrome b subunit HyaC K03620 hyaC; Ni/Fe-hydrogenase 1 B-type cytochrome subunit
D SO_2124 cheR; chemotaxis signal transduction system MCP methyltransferase CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D SO_2325 cheR; chemotaxis signal transduction system MCP methyltransferase CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D SO_3251 cheR; chemotaxis signal transduction system MCP methyltransferase CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D SO_2323 chemotaxis signal transduction system methyl accepting sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D SO_2123 chemotaxis signal transduction system methyl accepting sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D SO_2117 chemotaxis signal transduction system methyl accepting sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D SO_A0106 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D SO_4053 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D SO_4557 methyl-accepting chemotaxis protein with Cache sensory domain K03406 mcp; methyl-accepting chemotaxis protein
D SO_3642 energy taxis modulating methyl accepting sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D SO_1434 chemotaxis signal transduction system methyl accepting sensory transducer with 4HB_MCP sensory domain K03406 mcp; methyl-accepting chemotaxis protein
D SO_4454 energy taxis-modulating methyl-accepting chemotaxis protein with Cache_1 sensory domain K03406 mcp; methyl-accepting chemotaxis protein
D SO_3838 chemotaxis signal transduction system methyl accepting sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D SO_2083 chemotaxis signal transduction system methyl accepting sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D SO_0500 chemotaxis signal transduction system methyl accepting sensory transducer with 4HB_MCP sensory domain K03406 mcp; methyl-accepting chemotaxis protein
D SO_1056 methyl accepting sensory transducer with Cache_1 small molecule binding domain K03406 mcp; methyl-accepting chemotaxis protein
D SO_0987 methyl accepting sensory transducer with Cache_2 small molecule binding domain K03406 mcp; methyl-accepting chemotaxis protein
D SO_2240 energy taxis modulating methyl accepting sensory transducer with Cache_2 sensory domain K03406 mcp; methyl-accepting chemotaxis protein
D SO_3582 methyl-accepting chemotaxis sensory transducer with 4HB sensory domain K03406 mcp; methyl-accepting chemotaxis protein
D SO_3282 energy taxis modulating methyl accepting sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D SO_1278 chemotaxis signal transduction system methyl accepting sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D SO_3052 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D SO_4466 chemotaxis signal transduction system methyl accepting sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D SO_0584 chemotaxis signal transduction system methyl accepting sensory transducer with PAS sensory domain K03776 aer; aerotaxis receptor
D SO_1385 chemotaxis signal transduction system methyl accepting sensory transducer with PAS sensory domain K03776 aer; aerotaxis receptor
D SO_3404 methyl accepting sensory transducer with PAS sensory domain K03776 aer; aerotaxis receptor
D SO_2122 cheW; chemotaxis signal transduction system adaptor protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D SO_2324 cheW; chemotaxis signal transduction system adaptor protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D SO_3202 cheW; chemotaxis signal transduction system adaptor protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D SO_3203 cheW; chemotaxis signal transduction system adaptor protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D SO_2121 cheA; chemotaxis signal transduction system histidine kinase CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D SO_3207 cheA; chemotaxis signal transduction system histidine kinase CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D SO_2120 cheY; chemotaxis signal transduction system response regulator CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D SO_2318 cheY; chemotaxis signal transduction system response regulator CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D SO_3209 cheY; chemotaxis signal transduction system response regulator CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D SO_0549 two component signal transduction system response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D SO_2327 cheB; chemotaxis signal transduction system response regulator with glutamate methylesterase domain CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D SO_2126 cheB; chemotaxis signal transduction system response regulator with glutamate methylesterase domain CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D SO_3206 cheB; chemotaxis signal transduction system response regulator with glutamate methylesterase domain CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D SO_1989 cheV; chemotaxis signal transduction system response regulator CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D SO_3123 cheV; chemotaxis signal transduction system response regulator CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D SO_3252 cheV; chemotaxis signal transduction system response regulator CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D SO_3134 dctP; TRAP-type C4-dicarboxylate:H+ symport system substrate-binding component DctP K11688 dctP; C4-dicarboxylate-binding protein DctP
D SO_3135 dctQ; TRAP-type C4-dicarboxylate:H+ symport system small permease component DctQ K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit
D SO_3136 dctM; TRAP-type C4-dicarboxylate:H+ symport system large permease component DctM K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D SO_4155 ttrS; thiosulfate/tetrathionate-responsive two component signal transduction system histidine kinase TtrS K13040 ttrS; two-component system, LuxR family, sensor histidine kinase TtrS [EC:2.7.13.3]
D SO_1417 two component signal transduction system histidine kinase K13040 ttrS; two-component system, LuxR family, sensor histidine kinase TtrS [EC:2.7.13.3]
D SO_4157 ttrR; thiosulfate/tetrathionate-responsive two component signal transduction system response regulator TtrR K13041 ttrR; two-component system, LuxR family, response regulator TtrR
D SO_1416 two component signal transduction system response regulator LuxR family K13041 ttrR; two-component system, LuxR family, response regulator TtrR
D SO_3232 flrA; Sigma54-dependent transcriptional regulator for flagellar biosynthesis FlrA K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D SO_3231 flrB; two component signal transduction system controlling flagellar biosynthesis histidine kinase with PAS sensory domain FlrB K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3]
D SO_3230 flrC; two component signal transduction system controlling flagella biosynthesis Sigma54-dependent response regulator FlrC K10943 flrC; two-component system, response regulator FlrC
D SO_0624 crp; cAMP-responsive regulator of catabolite repression Crp K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D SO_3365 glsA; glutaminase A GlsA K01425 glsA; glutaminase [EC:3.5.1.2]
D SO_4173 prrB; oxygen-responsive two component signal transduction system controlling redox affected systems histidine kinase PrrB K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3]
D SO_4172 prrA; oxygen-responsive two component signal transduction system controlling redox affected systems response regulator PrrA K15012 regA; two-component system, response regulator RegA
D SO_0608 petA; ubiquinol-cytochrome c reductase FeS subunit PetA K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D SO_0609 petB; ubiquinol-cytochrome c reductase cytochrome b subunit PetB K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D SO_0610 petC; ubiquinol-cytochrome c reductase cytochrome c1 subunit PetC K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D SO_2364 ccoN; Cbb3-type cytochrome c oxidase subunit I CcoN K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9]
D SO_2363 ccoO; Cbb3-type cytochrome c oxidase subunit II CcoO K00405 ccoO; cytochrome c oxidase cbb3-type subunit II
D SO_2362 ccoQ; Cbb3-type cytochrome c oxidase subunit IV CcoQ K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV
D SO_2361 ccoP; Cbb3-type cytochrome c oxidase subunit III CcoP K00406 ccoP; cytochrome c oxidase cbb3-type subunit III
D SO_3286 cydA; cytochrome d ubiquinol oxidase subunit I CydA K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D SO_3285 cydB; cytochrome d ubiquinol oxidase subunit II CydB K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D SO_3284 ybgT; protein YbgT K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7]
D SO_3904 tolC; global secretion system secretin TolC K12340 tolC; outer membrane protein
D SO_3193 wza; outer membrane polysaccharide export channel protein Wza K01991 wza; polysaccharide biosynthesis/export protein
D SO_2208 ptpA; low molecular weight phosphotyrosine protein phosphatase PtpA K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]
D SO_2118 chemotaxis locus anti-sigma factor antagonist K20978 hsbA; HptB-dependent secretion and biofilm anti anti-sigma factor
D SO_3254 flgM; flagellar biosynthesis anti-sigma factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis [PATH:son04148]
D SO_0314 speF; ornithine decarboxylase SpeF K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
D SO_4136 speC; ornithine decarboxylase SpeC K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
D SO_0608 petA; ubiquinol-cytochrome c reductase FeS subunit PetA K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:son02024]
D SO_1101 luxS; S-ribosylhomocysteinase LuxS K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D SO_0603 hfq; RNA-binding pleiotrophic regulator Hfq K03666 hfq; host factor-I protein
D SO_3019 trpE; anthranilate synthase component I TrpE K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D SO_3020 trpG; anthranilate synthase component II glutamine amido-transferase TrpG K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D SO_0756 aroG; phospho-2-dehydro-3-deoxyheptonate aldolase phe-sensitive AroG K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D SO_1361 aroF; phospho-2-dehydro-3-deoxyheptonate aldolase tyr-sensitive AroF K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D SO_2646 aroH; phospho-2-dehydro-3-deoxyheptonate aldolase trp-sensitive AroH K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D SO_2105 qseC; AI-3-responsive two component signal transduction system histidine kinase QseC K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
D SO_2104 qseB; AI-3-responsive two component signal transduction system response regulator QseB K07666 qseB; two-component system, OmpR family, response regulator QseB
D SO_0059 kdpE; two component signal transduction system controlling the osmosenstive K+ channel response regulator KdpE K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D SO_2581 fadD; long chain fatty acid CoA ligase FadD K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D SO_0075 icfE; long-chain-fatty-acid--CoA ligase IcfE K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D SO_3664 fadD; long chain fatty acid CoA ligase FadD K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D SO_0624 crp; cAMP-responsive regulator of catabolite repression Crp K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D SO_2831 ribA; GTP cyclohydrolase II RibA K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D SO_3469 ribD; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D SO_0370 inner membrane protein of unknown function DUF606 K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D SO_0371 membrane protein of unknown function DUF606 K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D SO_0004 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D SO_3106 sapSH; extracellular serine alkaline protease SapSH K14645 K14645; serine protease [EC:3.4.21.-]
D SO_0218 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D SO_1201 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D SO_0251 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D SO_3112 yajC; SecDF preprotein translocase-associated protein YajC K03210 yajC; preprotein translocase subunit YajC
D SO_4211 secA; preprotein translocase ATPase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D SO_4586 ftsY; signal recognition particle docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D SO_0052 secB; protein export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D SO_1356 ffh; signal recognition particle protein Ffh K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:son02030]
D SO_2323 chemotaxis signal transduction system methyl accepting sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D SO_2123 chemotaxis signal transduction system methyl accepting sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D SO_2117 chemotaxis signal transduction system methyl accepting sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D SO_A0106 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D SO_4053 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D SO_4557 methyl-accepting chemotaxis protein with Cache sensory domain K03406 mcp; methyl-accepting chemotaxis protein
D SO_3642 energy taxis modulating methyl accepting sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D SO_1434 chemotaxis signal transduction system methyl accepting sensory transducer with 4HB_MCP sensory domain K03406 mcp; methyl-accepting chemotaxis protein
D SO_4454 energy taxis-modulating methyl-accepting chemotaxis protein with Cache_1 sensory domain K03406 mcp; methyl-accepting chemotaxis protein
D SO_3838 chemotaxis signal transduction system methyl accepting sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D SO_2083 chemotaxis signal transduction system methyl accepting sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D SO_0500 chemotaxis signal transduction system methyl accepting sensory transducer with 4HB_MCP sensory domain K03406 mcp; methyl-accepting chemotaxis protein
D SO_1056 methyl accepting sensory transducer with Cache_1 small molecule binding domain K03406 mcp; methyl-accepting chemotaxis protein
D SO_0987 methyl accepting sensory transducer with Cache_2 small molecule binding domain K03406 mcp; methyl-accepting chemotaxis protein
D SO_2240 energy taxis modulating methyl accepting sensory transducer with Cache_2 sensory domain K03406 mcp; methyl-accepting chemotaxis protein
D SO_3582 methyl-accepting chemotaxis sensory transducer with 4HB sensory domain K03406 mcp; methyl-accepting chemotaxis protein
D SO_3282 energy taxis modulating methyl accepting sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D SO_1278 chemotaxis signal transduction system methyl accepting sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D SO_3052 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D SO_4466 chemotaxis signal transduction system methyl accepting sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D SO_0584 chemotaxis signal transduction system methyl accepting sensory transducer with PAS sensory domain K03776 aer; aerotaxis receptor
D SO_1385 chemotaxis signal transduction system methyl accepting sensory transducer with PAS sensory domain K03776 aer; aerotaxis receptor
D SO_3404 methyl accepting sensory transducer with PAS sensory domain K03776 aer; aerotaxis receptor
D SO_3714 ABC-type monosaccharide transport system substrate binding component K10439 rbsB; ribose transport system substrate-binding protein
D SO_2121 cheA; chemotaxis signal transduction system histidine kinase CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D SO_3207 cheA; chemotaxis signal transduction system histidine kinase CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D SO_2122 cheW; chemotaxis signal transduction system adaptor protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D SO_2324 cheW; chemotaxis signal transduction system adaptor protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D SO_3202 cheW; chemotaxis signal transduction system adaptor protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D SO_3203 cheW; chemotaxis signal transduction system adaptor protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D SO_2120 cheY; chemotaxis signal transduction system response regulator CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D SO_2318 cheY; chemotaxis signal transduction system response regulator CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D SO_3209 cheY; chemotaxis signal transduction system response regulator CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D SO_0549 two component signal transduction system response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D SO_2546 cheC; chemotaxis signal transduction system inhibitor of MCP methylation CheC K03410 cheC; chemotaxis protein CheC
D SO_3208 cheZ; chemotaxis signal transduction system CheY phosphatase CheZ K03414 cheZ; chemotaxis protein CheZ
D SO_3915 cheX; chemotaxis signal transduction system CheY dephosphorylase CheX K03409 cheX; chemotaxis protein CheX
D SO_2327 cheB; chemotaxis signal transduction system response regulator with glutamate methylesterase domain CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D SO_2126 cheB; chemotaxis signal transduction system response regulator with glutamate methylesterase domain CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D SO_3206 cheB; chemotaxis signal transduction system response regulator with glutamate methylesterase domain CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D SO_1989 cheV; chemotaxis signal transduction system response regulator CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D SO_3123 cheV; chemotaxis signal transduction system response regulator CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D SO_3252 cheV; chemotaxis signal transduction system response regulator CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D SO_2125 cheD; chemotaxis signal transduction system chemoreceptor glutamine deamidase CheD K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44]
D SO_2326 cheD; chemotaxis signal transduction system chemoreceptor glutamine deamidase CheD K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44]
D SO_2124 cheR; chemotaxis signal transduction system MCP methyltransferase CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D SO_2325 cheR; chemotaxis signal transduction system MCP methyltransferase CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D SO_3251 cheR; chemotaxis signal transduction system MCP methyltransferase CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D SO_3227 fliG; flagellar motor switching and energizing component FliG K02410 fliG; flagellar motor switch protein FliG
D SO_3221 fliM; flagellar motor switching and energizing component FliM K02416 fliM; flagellar motor switch protein FliM
D SO_3220 fliN; flagellar motor switching and energizing component FliN K02417 fliN; flagellar motor switch protein FliN
D SO_1529 pomA; stator-force generator of Na+ coupled flagellar motor PomA K02556 motA; chemotaxis protein MotA
D SO_4287 motA; stator-force generator of H+ coupled flagellar motor MotA K02556 motA; chemotaxis protein MotA
D SO_1530 pomB; stator-force generator of Na+ coupled flagellar motor PomB K02557 motB; chemotaxis protein MotB
D SO_4286 motB; stator-force generator of H+ coupled flagellar motor MotB K02557 motB; chemotaxis protein MotB
C 02040 Flagellar assembly [PATH:son02040]
D SO_3229 fliE; flagellar basal-body component FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D SO_3228 fliF; flagellar basal-body MS-ring and collar protein FliF K02409 fliF; flagellar M-ring protein FliF
D SO_3227 fliG; flagellar motor switching and energizing component FliG K02410 fliG; flagellar motor switch protein FliG
D SO_3226 fliH; flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D SO_3225 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D SO_3224 fliJ; flagellar chaperone escort protein FliJ K02413 fliJ; flagellar protein FliJ
D SO_3223 fliK; flagellar hook-length control protein FliK K02414 fliK; flagellar hook-length control protein FliK
D SO_3222 fliL; flagellar basal body protein FliL K02415 fliL; flagellar protein FliL
D SO_0132 periplasmic FliL-like protein K02415 fliL; flagellar protein FliL
D SO_3221 fliM; flagellar motor switching and energizing component FliM K02416 fliM; flagellar motor switch protein FliM
D SO_3220 fliN; flagellar motor switching and energizing component FliN K02417 fliN; flagellar motor switch protein FliN
D SO_3219 fliO; flagellar export protein FliO K02418 fliO; flagellar protein FliO/FliZ
D SO_3218 fliP; flagellar export protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D SO_3217 fliQ; flagellar export protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D SO_3216 fliR; flagellar export protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D SO_3213 flhA; flagellar export protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D SO_3215 flhB; flagellar export protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D SO_3253 flgA; assembly protein for flagellar basal-body P ring FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D SO_3250 flgB; flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D SO_3249 flgC; flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D SO_3248 flgD; flagellar hook assembly protein FlgD K02389 flgD; flagellar basal-body rod modification protein FlgD
D SO_3247 flgE; flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE
D SO_3245 flgF; flagellar component of cell-proximal portion of basal-body rod FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D SO_3244 flgG; flagellar component of cell-distal portion of basal-body rod FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D SO_3243 flgH; flagellar L-ring protein FlgH K02393 flgH; flagellar L-ring protein FlgH
D SO_3242 flgI; flagellar P-ring protein FlgI K02394 flgI; flagellar P-ring protein FlgI
D SO_3241 flgJ; flagellar rod cap protein and peptidoglycan hydrolase FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ
D SO_3240 flgK; flagellar hook-filament junction protein FlgK K02396 flgK; flagellar hook-associated protein 1
D SO_3239 flgL; flagellar hook-associated protein FlgL K02397 flgL; flagellar hook-associated protein 3 FlgL
D SO_3256 flgP; outer membrane lipoprotein required for flagellar motility FlgP K09860 flgP; outer membrane protein FlgP
D SO_3936 motX; flagellar rotation associated protein MotX K21217 motX; sodium-type polar flagellar protein MotX
D SO_2754 motY; smf-dependent flagellar motor protein MotY K21218 motY; sodium-type flagellar protein MotY
D SO_3237 fliC; flagellin FliC K02406 fliC; flagellin
D SO_3238 fliC; flagellin FliC K02406 fliC; flagellin
D SO_3235 fliD; flagellar filament capping protein FliD K02407 fliD; flagellar hook-associated protein 2
D SO_3233 fliS; chaperone for FliC flagellin FliS K02422 fliS; flagellar secretion chaperone FliS
D SO_1529 pomA; stator-force generator of Na+ coupled flagellar motor PomA K02556 motA; chemotaxis protein MotA
D SO_4287 motA; stator-force generator of H+ coupled flagellar motor MotA K02556 motA; chemotaxis protein MotA
D SO_1530 pomB; stator-force generator of Na+ coupled flagellar motor PomB K02557 motB; chemotaxis protein MotB
D SO_4286 motB; stator-force generator of H+ coupled flagellar motor MotB K02557 motB; chemotaxis protein MotB
D SO_3254 flgM; flagellar biosynthesis anti-sigma factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
D SO_3255 flgN; secretion chaperone for FlgK and FlgL FlgN K02399 flgN; flagellar biosynthesis protein FlgN
D SO_1284 rpoD; RNA polymerase sigma-70 factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D SO_3232 flrA; Sigma54-dependent transcriptional regulator for flagellar biosynthesis FlrA K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D SO_3961 rpoN; RNA polymerase sigma-54 factor RpoN K03092 rpoN; RNA polymerase sigma-54 factor
D SO_3230 flrC; two component signal transduction system controlling flagella biosynthesis Sigma54-dependent response regulator FlrC K10943 flrC; two-component system, response regulator FlrC
D SO_3210 fliA; RNA polymerase sigma-28 factor for flagellar operon FliA K02405 fliA; RNA polymerase sigma factor FliA
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D SO_3440 eno; enolase Eno K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
D SO_1030 metH; B12-dependent 5-methyltetrahydrofolate--homocysteine methyltransferase MetH K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:son01501]
D SO_1821 outer membrane porin K09476 ompF; outer membrane pore protein F
D SO_3814 ampG; GlcNAc-anhMurNAc permease AmpG K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D SO_2250 nagZ; beta-N-acetylglucosaminidase NagZ K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D SO_2388 ampC; class C beta-lactamase AmpC K01467 ampC; beta-lactamase class C [EC:3.5.2.6]
D SO_4326 vexR; transcriptional repressor of multidrug/detergent efflux pump VexR K18136 acrR; TetR/AcrR family transcriptional regulator, multidrug resistance operon repressor
D SO_4693 vmeA; proton-coupled multidrug efflux pump MFP component VmeA K03585 acrA; membrane fusion protein, multidrug efflux system
D SO_1881 HAE1 family efflux pump MFP component K03585 acrA; membrane fusion protein, multidrug efflux system
D SO_4327 vexB; RND-type multidrug/detergent efflux system MFP component VexB K03585 acrA; membrane fusion protein, multidrug efflux system
D SO_3483 HAE1 family efflux pump MFP component K03585 acrA; membrane fusion protein, multidrug efflux system
D SO_4692 vmeB; proton-coupled multidrug efflux pump permease component VmeB K18138 acrB; multidrug efflux pump
D SO_1882 HAE1 family efflux pump permease component K18138 acrB; multidrug efflux pump
D SO_4328 vexA; RND-type multidrug/detergent efflux system permease component VexA K18138 acrB; multidrug efflux pump
D SO_3904 tolC; global secretion system secretin TolC K12340 tolC; outer membrane protein
D SO_0280 mcrA; penicillin-binding protein 1A McrA K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D SO_1168 mrdA; penicillin-binding protein 2 MrdA K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D SO_4225 ftsI; peptidoglycan synthetase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D SO_0837 blaA; class D carbapenem-hydrolyzing beta-lactamase BlaA K18976 blaOXA-48; beta-lactamase class D OXA-48 [EC:3.5.2.6]
C 01502 Vancomycin resistance [PATH:son01502]
D SO_2217 ddlA; D-alanine--D-alanine ligase DdlA K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D SO_3916 alr; alanine racemase biosynthetic Alr K01775 alr; alanine racemase [EC:5.1.1.1]
D SO_4223 murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanyl ligase MurF K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D SO_4222 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase MraY K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D SO_4219 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase MurG K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:son01503]
D SO_1945 phoQ; two component signal transduction system histidine kinase PhoQ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D SO_4648 two component signal transduction system histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D SO_1946 phoP; two component signal transduction system response regulator PhoP K07660 phoP; two-component system, OmpR family, response regulator PhoP
D SO_4647 two component signal transduction system response regulator OmpR family K07660 phoP; two-component system, OmpR family, response regulator PhoP
D SO_2048 sulfatase with domain of unknown function DUF1705 K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D SO_1805 sapA; ABC-type peptide uptake system substrate-binding component SapA K19226 sapA; cationic peptide transport system substrate-binding protein
D SO_1804 sapB; ABC-type peptide uptake system permease component 1 SapB K19227 sapB; cationic peptide transport system permease protein
D SO_1803 sapC; ABC-type peptide uptake system permease component 2 SapC K19228 sapC; cationic peptide transport system permease protein
D SO_1802 sapD; ABC-type peptide uptake system ATPase component 1 SapD K19229 sapD; cationic peptide transport system ATP-binding protein
D SO_1801 sapF; ABC-type peptide uptake system ATPase component 2 SapF K19230 sapF; cationic peptide transport system ATP-binding protein
D SO_4478 cpxA; periplasmic stress-responsive two component signal transduction system histidine kinase CpxA K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D SO_4477 cpxR; periplasmic stress-responsive two component signal transduction system response regulator CpxR K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D SO_0600 amiB; N-acetylmuramoyl-L-alanine amidase AmiB K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D SO_0333 dsbA; periplasmic thiol:disulfide interchange protein DsbA K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D SO_2860 thiol:disulfide interchange protein DsbA family K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D SO_3812 ppiA; periplasmic peptidyl-prolyl cis-trans isomerase PpiA K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D SO_4693 vmeA; proton-coupled multidrug efflux pump MFP component VmeA K03585 acrA; membrane fusion protein, multidrug efflux system
D SO_1881 HAE1 family efflux pump MFP component K03585 acrA; membrane fusion protein, multidrug efflux system
D SO_4327 vexB; RND-type multidrug/detergent efflux system MFP component VexB K03585 acrA; membrane fusion protein, multidrug efflux system
D SO_3483 HAE1 family efflux pump MFP component K03585 acrA; membrane fusion protein, multidrug efflux system
D SO_4692 vmeB; proton-coupled multidrug efflux pump permease component VmeB K18138 acrB; multidrug efflux pump
D SO_1882 HAE1 family efflux pump permease component K18138 acrB; multidrug efflux pump
D SO_4328 vexA; RND-type multidrug/detergent efflux system permease component VexA K18138 acrB; multidrug efflux pump
D SO_3904 tolC; global secretion system secretin TolC K12340 tolC; outer membrane protein
D SO_1641 lpxA; acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase LpxA K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:son01000]
C 01001 Protein kinases [BR:son01001]
D SO_3973 Ser/Thr protein kinase K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D SO_0063 toxin-antitoxin system toxin HipA family K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D SO_3170 toxin-antitoxin system toxin HipA family K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D SO_0706 toxin-antitoxin system toxin HipA family K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D SO_1559 phoR; phosphate-responsive two component signal transduction system histidine kinase with PAS and DUF3329 domains PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D SO_1945 phoQ; two component signal transduction system histidine kinase PhoQ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D SO_4648 two component signal transduction system histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D SO_4634 envZ; osmolarity-responsive two component signal transduction system histidine kinase EnvZ K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D SO_4478 cpxA; periplasmic stress-responsive two component signal transduction system histidine kinase CpxA K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D SO_2105 qseC; AI-3-responsive two component signal transduction system histidine kinase QseC K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
D SO_1230 torS; TMAO-responsive two component signal transduction system hybrid histidine kinase/response regulator TorS K07647 torS; two-component system, OmpR family, sensor histidine kinase TorS [EC:2.7.13.3]
D SO_3595 rstB; two component signal transduction system histidine kinase RstB K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D SO_3981 narQ; nitrate/nitrite-responsive two component signal transduction system histidine kinase NarQ K07674 narQ; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarQ [EC:2.7.13.3]
D SO_3457 barA; two component signal transduction system hybrid histidine kinase/response regulator with DUF2222 and Hpt domains BarA K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D SO_0352 two component signal transduction system histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3]
D SO_2822 yehU; two component signal transduction system histidine kinase with GAF sensory domain YehU K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D SO_4471 glnL; nitrogen-responsive two component signal transduction system histidine kinase with PAS sensory domain GlnL K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D SO_4717 tungstate-responsive two component signal transduction system histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D SO_2121 cheA; chemotaxis signal transduction system histidine kinase CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D SO_3207 cheA; chemotaxis signal transduction system histidine kinase CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D SO_4155 ttrS; thiosulfate/tetrathionate-responsive two component signal transduction system histidine kinase TtrS K13040 ttrS; two-component system, LuxR family, sensor histidine kinase TtrS [EC:2.7.13.3]
D SO_1417 two component signal transduction system histidine kinase K13040 ttrS; two-component system, LuxR family, sensor histidine kinase TtrS [EC:2.7.13.3]
D SO_3231 flrB; two component signal transduction system controlling flagellar biosynthesis histidine kinase with PAS sensory domain FlrB K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3]
D SO_4173 prrB; oxygen-responsive two component signal transduction system controlling redox affected systems histidine kinase PrrB K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:son01009]
D SO_2016 htpG; heat shock chaperone HtpG K04079 HSP90A; molecular chaperone HtpG
D SO_1223 serB; phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:son01002]
D SO_3531 lspA; signal peptidase II LspA K03101 lspA; signal peptidase II [EC:3.4.23.36]
D SO_0414 pilD; type IV prepilin peptidase PilD K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D SO_2096 hyaD; NiFe hydrogenase maturation protease HyaD K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-]
D SO_3292 guaA; GMP synthase (glutamine-hydrolysing) GuaA K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D SO_1267 puuD; gamma-glutamyl-aminobutyrate hydrolase PuuD K07010 K07010; putative glutamine amidotransferase
D SO_A0049 ABC-type bacteriocin export system multifunctional permease/ATPase/protease component K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB
D SO_0061 nlpC; family C40 peptidase lipoprotein NlpC K13695 nlpC; probable lipoprotein NlpC
D SO_3064 purF; amidophosphoribosyltransferase PurF K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D SO_1325 gltB; NADPH-dependent glutamate synthase large subunit GltB K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D SO_4741 glmS; glutamine:fructose-6-phosphate transaminase (isomerizing) GlmS K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D SO_3506 nagB; glucosamine-6-phosphate deaminase NagB K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D SO_3175 wbpQ; asparagine synthase glutamine-hydrolyzing WbpQ K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D SO_2767 asnB; asparagine synthase glutamine-hydrolyzing AsnB K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D SO_1378 peptidase family 56 K05520 yhbO; deglycase [EC:3.5.1.124]
D SO_2196 srtA; sortase SrtA K07284 srtA; sortase A [EC:3.4.22.70]
D SO_3748 ybiS; LD-transpeptidase YbiS K19235 ybiS; L,D-transpeptidase YbiS
D SO_1899 periplasmic protein with peptidoglycan binding domain K21470 ycbB; L,D-transpeptidase YcbB
D SO_2109 peptidoglycan-binding protein K21470 ycbB; L,D-transpeptidase YcbB
D SO_1561 cytoplasmic zinc metallopeptidase M1 family K01254 LTA4H; leukotriene-A4 hydrolase [EC:3.3.2.6]
D SO_1997 cold-active zinc metallopeptidase M1 family K01254 LTA4H; leukotriene-A4 hydrolase [EC:3.3.2.6]
D SO_2600 pepN; alanyl aminopeptidase PepN K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D SO_1059 periplasmic alanyl aminopeptidase K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D SO_2494 peptidase family M2 K01283 ACE; peptidyl-dipeptidase A [EC:3.4.15.1]
D SO_4699 prlC; oligopeptidase A PrlC K01414 prlC; oligopeptidase A [EC:3.4.24.70]
D SO_3142 dcp; dipepidyl carboxypeptidase II Dcp K01284 dcp; peptidyl-dipeptidase Dcp [EC:3.4.15.5]
D SO_3564 dcp; dipeptidyl carboxypeptidase Dcp K01284 dcp; peptidyl-dipeptidase Dcp [EC:3.4.15.5]
D SO_0130 prtV; extracellular metalloprotease PrtV K09607 ina; immune inhibitor A [EC:3.4.24.-]
D SO_0639 collagenase K01387 colA; microbial collagenase [EC:3.4.24.3]
D SO_3844 pepO; thermoregulated outer membrane M13 family zinc endopeptidase PepO K07386 pepO; putative endopeptidase [EC:3.4.24.-]
D SO_0491 oligopeptidase lipoprotein M13 family K07386 pepO; putative endopeptidase [EC:3.4.24.-]
D SO_0429 pepO; cell surface zinc endopeptidase PepO K07386 pepO; putative endopeptidase [EC:3.4.24.-]
D SO_4022 periplasmic peptidase family M16B K07263 pqqL; zinc protease [EC:3.4.24.-]
D SO_3560 predicted non-catalytic member of peptidase subfamily M16B K07263 pqqL; zinc protease [EC:3.4.24.-]
D SO_4811 periplasmic peptidase family M16B K07263 pqqL; zinc protease [EC:3.4.24.-]
D SO_0959 periplasmic leucyl metal-dependent aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D SO_1117 cytoplasmic leucyl metal-dependent aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D SO_1368 pepA; cytoplasmic leucine metal-dependent aminopeptidase PepA K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D SO_0876 pepB; aminopeptidase PepB K07751 pepB; PepB aminopeptidase [EC:3.4.11.23]
D SO_2471 dapE; succinyl-diaminopimelate desuccinylase DapE K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D SO_1115 pepD; aminoacyl-histidine/glycine-aspartate dipeptidase PepD K01270 pepD; dipeptidase D [EC:3.4.13.-]
D SO_4420 subfamily M23B unassigned peptidase K21472 lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]
D SO_2842 subfamily M23B unassigned peptidase K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-]
D SO_1627 map; methionine aminopeptidase Map K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D SO_0022 pepQ; Xaa-Pro dipeptidase PepQ K01271 pepQ; Xaa-Pro dipeptidase [EC:3.4.13.9]
D SO_1388 ampP; aminopeptidase P AmpP K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D SO_1375 thermostable carboxypeptidase 1 K01299 E3.4.17.19; carboxypeptidase Taq [EC:3.4.17.19]
D SO_1197 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D SO_2728 htpX; Zn-dependent metalloprotease HtpX K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D SO_2869 yfgC; periplasmic Zn-dependent protease YfgC K01423 bepA; beta-barrel assembly-enhancing protease [EC:3.4.-.-]
D SO_1636 rseP; RseA degrading zinc metalloprotease RseP K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D SO_0440 ImpA-like cell surface immunomodulating metalloprotease K21429 impA; immunomodulating metalloprotease
D SO_3335 periplasmic protein of unknown function DUF980 K09933 mtfA; MtfA peptidase
D SO_3943 degS; serine protease DegS K04691 hhoB; serine protease DegS [EC:3.4.21.-]
D SO_3106 sapSH; extracellular serine alkaline protease SapSH K14645 K14645; serine protease [EC:3.4.21.-]
D SO_2753 prolyl endopeptidase K01322 PREP; prolyl oligopeptidase [EC:3.4.21.26]
D SO_2047 prolyl oligopeptidase family S9 protein K01322 PREP; prolyl oligopeptidase [EC:3.4.21.26]
D SO_3990 dpp4; periplasmic dipeptidylpeptidase IV Dpp4 K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
D SO_0144 ptrB; oligopeptidase B PtrB K01354 ptrB; oligopeptidase B [EC:3.4.21.83]
D SO_1164 dacA; D-alanyl-D-alanine carboxypeptidase DacA K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D SO_0999 pbpG; D-alanyl-D-alanine endopeptidase PbpG K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-]
D SO_2394 dacB; D-alanyl-D-alanine carboxypeptidase DacB K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D SO_1794 clpP; ATP-dependent Clp protease proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D SO_1796 lon; ATP-dependent protease La Lon K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D SO_4603 lexA; bifunctional transcriptional repressor of SOS-response/self-cleaving protease LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D SO_A0013 umuD; DNA polymerase V subunit UmuD K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D SO_1347 lepB; signal peptidase I LepB K03100 lepB; signal peptidase I [EC:3.4.21.89]
D SO_2924 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D SO_4400 prolyl aminopeptidase S33 family K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D SO_0047 periplasmic C-terminal peptidase S41 family K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D SO_2601 prc; periplasmic C-terminal processing protease Prc K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D SO_3411 predicted non-catalytic member of peptidase subfamily S41B K08676 tri; tricorn protease [EC:3.4.21.-]
D SO_2420 sppA; signal peptide peptidase SppA K04773 sppA; protease IV [EC:3.4.21.-]
D SO_2933 sohB; inner membrane anchored endopeptidase SohB K04774 sohB; serine protease SohB [EC:3.4.21.-]
D SO_2730 pepE; dipeptidase E PepE K05995 pepE; dipeptidase E [EC:3.4.13.21]
D SO_4671 glpG; intramembrane protease rhomboid family GlpG K02441 glpG; rhomboid protease GlpG [EC:3.4.21.105]
D SO_4162 hslV; HlsVU protease peptidase component HslV K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D SO_2115 iaaA; bifunctional isoaspartyl dipeptidase / l-asparaginase IaaA K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5]
D SO_1952 ggtA; gamma-glutamyltransferase GgtA K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D SO_0741 ggtB; gamma-glutamyltransferase GgtB K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D SO_1252 yegQ; peptidase U32 family YegQ K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D SO_3797 ydcP; peptidase U32 family YdcP K24847 rlhA; 23S rRNA 5-hydroxycytidine C2501 synthase
D SO_1248 peptidase U32 family YhbV K24845 ubiV; O2-independent ubiquinone biosynthesis protein UbiV
D SO_1249 peptidase U32 family YhbU K24844 ubiU; O2-independent ubiquinone biosynthesis protein UbiU
D SO_4078 tldE; microcin-processing peptidase TldE K03592 pmbA; PmbA protein
D SO_4091 tldD; microcin-processing peptidase 2 TldD K03568 tldD; TldD protein
D SO_2312 ecoT; serine protease inhibitor ecotin EcoT K08276 eco; ecotin
D SO_0066 YfhM family alpha2-macroglobulin K06894 yfhM; alpha-2-macroglobulin
D SO_0606 hflC; membrane anchored FtsH modulator component 2 HflC K04087 hflC; modulator of FtsH protease HflC
D SO_0605 hflK; membrane anchored FtsH modulator component 1 HflK K04088 hflK; modulator of FtsH protease HflK
C 01003 Glycosyltransferases [BR:son01003]
D SO_1499 glgA; glycogen synthase ADP-glucose transglucosylase GlgA K00703 glgA; starch synthase [EC:2.4.1.21]
D SO_3735 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase MtgA K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D SO_0067 pbpC; penicillin binding protein 1C PbpC K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D SO_0633 mrcB; penicillin-binding protein 1B MrcB K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D SO_0280 mcrA; penicillin-binding protein 1A McrA K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D SO_2108 opgH; glucan biosynthesis glucosyltransferase family 2 OpgH K03669 mdoH; membrane glycosyltransferase [EC:2.4.1.-]
D SO_4179 mxdB; glycosyl transferase family 2 MxdB K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:son01005]
D SO_1641 lpxA; acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase LpxA K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D SO_1642 lpxB; lipid A disaccharide synthase LpxB K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D SO_4214 lpxC; UDP-3-0-acyl N-acetylglucosamine deacetylase LpxC K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D SO_1639 lpxD; UDP-3-O-(3-hydroxymyristoyl) glucosamine n-acyltransferase LpxD K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D SO_1789 lpxH; UDP-23-diacylglucosamine hydrolase LpxH K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D SO_2801 lpxK; tetraacyldisaccharide 4'-kinase LpxK K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D SO_3746 lpxL; lipid A biosynthesis lauroyl acyltransferase LpxL K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D SO_2088 lpxM; KDO 2-(lauroyl)-lipid IVA acyltransferase LpxM K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243]
D SO_4676 kdtA; 3-deoxy-D-manno-octulosonic-acid (KDO) transferase KdtA K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D SO_2048 sulfatase with domain of unknown function DUF1705 K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D SO_4677 kdkA; 3-deoxy-D-manno-oct-2-ulosonic acid (KDO) kinase KdkA K11211 kdkA; 3-deoxy-D-manno-octulosonic acid kinase [EC:2.7.1.166]
D SO_2476 polysaccharide biosynthesis protein K19715 kdnA; 8-amino-3,8-dideoxy-alpha-D-manno-octulosonate transaminase [EC:2.6.1.109]
D SO_2477 alcohol dehydrogenase iron-containing K19714 kdnB; 3-deoxy-alpha-D-manno-octulosonate 8-oxidase [EC:1.1.3.48]
D SO_3827 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase KdsA K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D SO_2478 kdsB; 3-deoxy-D-manno-octulosonate cytidylyltransferase KdsB K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D SO_3957 kdsC; 3-deoxy-manno-octulosonate-8-phosphatase KdsC K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D SO_3956 kdsD; arabinose-5-phosphate isomerase KdsD K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D SO_4678 waaC; ADP-heptose-LPS heptosyltransferase WaaC K12982 opsX; heptosyltransferase I [EC:2.4.-.-]
D SO_2851 gmhB; DD-heptose 17-bisphosphate phosphatase GmhB K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D SO_3745 rfaE; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase RfaE K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:son01011]
D SO_3948 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase MurA K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D SO_0213 murB; UDP-N-acetylenolpyruvoylglucosamine reductase MurB K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D SO_4218 murC; UDP-N-acetylmuramate--alanine ligase MurC K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D SO_4221 murD; UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase MurD K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D SO_4224 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase MurE K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D SO_2217 ddlA; D-alanine--D-alanine ligase DdlA K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D SO_3916 alr; alanine racemase biosynthetic Alr K01775 alr; alanine racemase [EC:5.1.1.1]
D SO_0207 murI; glutamate racemase MurI K01776 murI; glutamate racemase [EC:5.1.1.3]
D SO_4222 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase MraY K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D SO_4219 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase MurG K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D SO_4274 uppP; undecaprenol diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D SO_1293 uppP; undecaprenol diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D SO_4195 PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D SO_3534 murJ; peptidoglycan lipid II flippase MurJ K03980 murJ; putative peptidoglycan lipid II flippase
D SO_0280 mcrA; penicillin-binding protein 1A McrA K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D SO_0633 mrcB; penicillin-binding protein 1B MrcB K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D SO_0067 pbpC; penicillin binding protein 1C PbpC K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D SO_1168 mrdA; penicillin-binding protein 2 MrdA K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D SO_4225 ftsI; peptidoglycan synthetase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D SO_1164 dacA; D-alanyl-D-alanine carboxypeptidase DacA K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D SO_2394 dacB; D-alanyl-D-alanine carboxypeptidase DacB K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D SO_0999 pbpG; D-alanyl-D-alanine endopeptidase PbpG K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-]
D SO_3735 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase MtgA K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D SO_3748 ybiS; LD-transpeptidase YbiS K19235 ybiS; L,D-transpeptidase YbiS
D SO_1899 periplasmic protein with peptidoglycan binding domain K21470 ycbB; L,D-transpeptidase YcbB
D SO_2109 peptidoglycan-binding protein K21470 ycbB; L,D-transpeptidase YcbB
D SO_2842 subfamily M23B unassigned peptidase K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-]
D SO_4420 subfamily M23B unassigned peptidase K21472 lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]
D SO_2196 srtA; sortase SrtA K07284 srtA; sortase A [EC:3.4.22.70]
D SO_2040 sltY; soluble lytic murein transglycosylase SltY K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D SO_1166 mltB; lytic murein transglycosylase B MltB K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D SO_1994 membrane-bound lytic transglycosylase MltB_2 family K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D SO_2564 membrane-bound lytic peptidoglycan transglycosylase D K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
D SO_3288 mltF; membrane bound lytic transglycosylase MltF K18691 mltF; peptidoglycan lytic transglycosylase F [EC:4.2.2.29]
D SO_2614 yceG; protein YceG K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D SO_1165 rlpA; septal ring lipoprotein RlpA K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D SO_0600 amiB; N-acetylmuramoyl-L-alanine amidase AmiB K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D SO_0421 ampD; N-acetyl-anhydromuramyl-L-alanine amidase AmpD K03806 ampD; N-acetyl-anhydromuramoyl-L-alanine amidase [EC:3.5.1.28]
D SO_1295 lpp; murein lipoprotein Lpp K06078 lpp; murein lipoprotein
C 01004 Lipid biosynthesis proteins [BR:son01004]
D SO_2777 fabD; malonyl CoA-acyl carrier protein transacylase FabD K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D SO_2778 fabH; 3-oxoacyl-(acyl-carrier-protein) synthase III FabH K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D SO_2853 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D SO_3072 fabB; 3-oxoacyl-(acyl-carrier-protein) synthase I FabB K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D SO_4380 beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D SO_2774 fabF; 3-oxoacyl-(acyl-carrier-protein) synthase II FabF K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D SO_4383 fabF; 3-oxoacyl-(acyl-carrier-protein) synthase II FabF K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D SO_1683 ivdG; 3-hydroxyacyl-CoA dehydrogenase IvdG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D SO_2776 fabG; 3-oxoacyl-(acyl-carrier-protein) reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D SO_4382 fabG; 3-oxoacyl-(acyl-carrier-protein) reductase FabG K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D SO_2813 oxidoreductase short chain dehydrogenase/reductase family K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D SO_1856 fabA; 3-hydroxydecanoyl-(acyl-carrier-protein) dehydratase FabA K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D SO_1640 fabZ; (3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D SO_1800 fabV; enoyl acyl-carrier-protein reductase FabV K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D SO_2928 tesA; multifunctional thioesterase/protease/lysophospholipase L1 TesA K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D SO_1912 tesB; acyl-CoA thioesterase II TesB K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
D SO_0197 oel1; fatty acid desaturase Ole1 K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D SO_2743 acs; acetyl-coenzyme A synthetase AcsA K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D SO_1900 prpE; propionyl-CoA synthetase PrpE K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17]
D SO_2581 fadD; long chain fatty acid CoA ligase FadD K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D SO_0075 icfE; long-chain-fatty-acid--CoA ligase IcfE K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D SO_3664 fadD; long chain fatty acid CoA ligase FadD K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D SO_1971 AMP-dependent synthetase and ligase family protein K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-]
D SO_4602 plsB; glycerol-3-phosphate O-acyltransferase PlsB K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D SO_2779 plsX; phosphate:acyl-ACP acyltransferase PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D SO_1290 plyY; acyl-PO4 glycerol-3-phosphate acyltransferase PlsY K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D SO_0567 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase PlsC K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins
C 01006 Prenyltransferases [BR:son01006]
D SO_1526 ispA; geranyl-diphosphate synthase/farnesyl-diphosphate synthase IspA K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D SO_3653 ispB; octaprenyl-diphosphate synthase IspB K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D SO_1633 uppS; undecaprenyl diphosphate synthase UppS K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D SO_0602 miaA; tRNA dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D SO_1910 menA; 1,4-dihydroxy-2-naphthoate octaprenyltransferase MenA K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D SO_0468 ubiA; 4-hydroxybenzoate octaprenyltransferase UbiA K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D SO_4614 ctaB; protoheme IX farnesyltransferase (heme O synthase) CtaB K02257 COX10; heme o synthase [EC:2.5.1.141]
C 01007 Amino acid related enzymes [BR:son01007]
D SO_3130 gltX; glutamyl-tRNA synthetase GltX K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D SO_1786 glnS; glutaminyl-tRNA synthetase GlnS K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D SO_0873 yadB; glutamyl-Q-tRNA-Asp synthetase YadB K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D SO_1315 tyrS; tyrosyl-tRNA synthetase TyrS K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D SO_0294 trpS; tryptophanyl-tRNA synthetase TrpS K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D SO_1791 cysS; cysteinyl-tRNA synthetase CysS K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D SO_4123 argS; arginyl-tRNA synthetase ArgS K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D SO_2619 metG; methionyl-tRNA synthetase MetG K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D SO_3532 ileS; isoleucyl-tRNA synthetase IleS K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D SO_3424 valS; valyl-tRNA synthetase ValS K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D SO_1174 leuS; leucyl-tRNA synthetase LeuS K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D SO_0992 lysS; lysyl-tRNA synthetase LysS K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D SO_2433 aspS; aspartyl-tRNA synthetase AspS K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D SO_2218 asnS; asparaginyl-tRNA synthetase AsnS K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D SO_3311 hisS; histidyl-tRNA synthetase HisS K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D SO_0015 glyQ; glycyl-tRNA synthetase alpha subunit GlyQ K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D SO_0014 glyS; glycyl-tRNA synthetase beta subunit GlyS K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D SO_2310 serS; seryl-tRNA synthetase SerS K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D SO_3154 proS; prolyl-tRNA synthetase ProS K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D SO_2299 thrS; threonyl-tRNA synthetase ThrS K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D SO_3428 alaS; alanyl-tRNA synthetase AlaS K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D SO_2085 pheS; phenylalanyl-tRNA synthetase alpha subunit PheS K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D SO_2086 pheT; phenylalanyl-tRNA synthetase beta subunit PheT K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D SO_2406 aspC; aspartate aminotransferase AspC K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D SO_2483 yfbQ; PLP-dependent aminotransferase YfbQ K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D SO_2350 aspC; aspartate aminotransferase AspC K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D SO_2072 hisC; histidinol-phosphate aminotransferase HisC K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D SO_4674 kbl; 2-amino-3-ketobutyrate coenzyme A ligase Kbl K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D SO_2739 bioF; 8-amino-7-oxononanoate synthase BioF K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D SO_3497 aptA; beta-alanine-pyruvate transaminase AptA K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18]
D SO_0617 argD; bifunctional acetylornithine aminotransferase/succinyl-diaminopimelate aminotransferase/succinylornithine transaminase ArgD K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D SO_1276 puuE; GABA aminotransferase PLP-dependent PuuE K07250 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase / 5-aminovalerate transaminase [EC:2.6.1.19 2.6.1.22 2.6.1.48]
D SO_2741 bioA; adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D SO_1300 hemL; glutamate-1-semialdehyde-21-aminomutase HemL K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D SO_0340 ilvE; branched-chain-amino-acid transaminase IlvE K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D SO_4343 agxT; serine-pyruvate aminotransferase AgxT K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D SO_2410 serC; bifunctional 3-phosphoserine aminotransferase/phosphohydroxythreonine SerC K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:son00194]
D SO_4746 atpC; ATP synthase F1 epsilon subunit AtpC K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D SO_4747 atpD; ATP synthase F1 beta subunit AtpD K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D SO_4748 atpG; ATP synthase F1 gamma subunit AtpG K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D SO_4749 atpA; ATP synthase F1 alpha subunit AtpA K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D SO_4750 atpH; ATP synthase F1 delta subunit AtpH K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D SO_4751 atpF; ATP synthase F0 B subunit AtpF K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D SO_4752 atpE; ATP synthase F0 C subunit AtpE K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D SO_4753 atpB; ATP synthase F0 A subunit AtpB K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D SO_4754 atpI; ATP synthase assembly protein AtpI K02116 atpI; ATP synthase protein I
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:son03000]
D SO_3006 dcm; Lambda phage type II restriction modification system cytosine-5 DNA methyltransferase Dcm K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D SO_3127 multifunctional transcriptional regulator of DNA repair AraC family/DNA glycosylase / 8-oxoguanine DNA glycosylase K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D SO_1533 gcvA; transcriptional activator of glycine metabolism GcvA K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D SO_2847 transcriptional regulator LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D SO_0529 trpI; transcriptional activator of tryptophan biosynthesis TrpI K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D SO_4350 ilvY; acetohydroxybutyrate/acetolactate-responsive transcriptional regulator of isoleucine-valine biosynthesis IlvY K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D SO_0817 metR; transcription regulator of methionine biosynthesis MetR K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D SO_1338 nhaR; transcriptional activator of osmotic stress protection NhaR K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D SO_1328 oxyR; transcriptional regulator of oxidative stress OxyR K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D SO_2866 argP; arginine/lysine-responsive transcriptional regulator ArgP K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D SO_2649 cysB; transcriptional activator of cys regulon CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D SO_3460 lldR; transcriptional regulator of L-lactate utilization LldR K18927 lldR; LysR family transcriptional regulator, L-lactate utilization regulator
D SO_3757 transcriptional regulator of bicarbonate utilization LysR family K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator
D SO_2202 hdtR; transcriptional regulator HdfR K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
D SO_3516 nagR; transcriptional repressor of N-acetylglucosamine utilization NagR K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D SO_0096 hutC; transcriptional repressor of histidine utilization genes HutC K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D SO_2885 fadR; transcriptional regulator of fatty acid metabolism FadR K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D SO_0423 pdhR; transcriptional repressor of pyruvate metabolism PdhR K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D SO_4326 vexR; transcriptional repressor of multidrug/detergent efflux pump VexR K18136 acrR; TetR/AcrR family transcriptional regulator, multidrug resistance operon repressor
D SO_4251 slmA; transcriptional repressor of cell division SlmA K05501 slmA; TetR/AcrR family transcriptional regulator
D SO_4468 nemR; transcriptional repressor of N-ethylmaleimide reductase NemR K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D SO_1578 transcriptional repressor of glutathione detoxification K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D SO_3277 transcriptional repressor of RND efflux transporter TetR family K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor
D SO_0198 fabR; transcriptional repressor of fatty acid biosynthesis FabR K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
D SO_3799 asnC; asparagine-responsive transcriptional regulator AsnC K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D SO_2305 lrp; leucine-responsive regulatory protein Lrp K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D SO_4337 transcriptional regulator AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D SO_4567 transcriptional regulator AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D SO_4052 slyA; transcriptional regulator SlyA K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D SO_0977 ohrR; hydroperoxide resistance transcriptional regulator OhrR K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D SO_1687 cueR; copper-responsive transcriptional regulator of copper exporter CueR K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D SO_0443 zntR; zinc and cadmium (II) responsive transcriptional activator ZntR K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA
D SO_1937 fur; transcriptional repressor of iron homeostasis Fur K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D SO_0624 crp; cAMP-responsive regulator of catabolite repression Crp K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D SO_2356 fnr; oxygen-responsive transcriptional regulator of anaerobiosis response Fnr K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D SO_2263 iscR; transcriptional repressor of iron-sulfur cluster assembly genes IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D SO_0045 nsrR; nitrite-sensitive transcriptional repressor NsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D SO_0532 arsR; arsenite-sensing transcriptional repressor ArsR K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D SO_3538 hlyU; transcriptional activator HlyU K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator
D SO_0026 transcriptional regulator ArsR family K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator
D SO_2490 hexR; 2-keto-3-deoxy-6-phosphogluconate-responsive transcriptional regulator of central carbohydrate metabolism HexR K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D SO_0214 birA; bifunctional biotin operon repressor/biotin-[acetyl-CoA-carboxylase] ligase BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D SO_0393 fis; global transcriptional activator Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D SO_3419 trpR; transcriptional repressor of aromatic amino acid biosynthesis TrpR K03720 trpR; TrpR family transcriptional regulator, trp operon repressor
D SO_2653 ner; Mu phage transcriptional regulator Ner K07724 ner; Ner family transcriptional regulator
D SO_A0071 toxin-antitoxin system antidote transcriptional repressor Xre family K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D SO_3232 flrA; Sigma54-dependent transcriptional regulator for flagellar biosynthesis FlrA K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D SO_4479 Sigma54 dependent transcriptional regulator with GAF sensory domain Fis family K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D SO_3660 Sigma54-dependent transcriptional regulator with PAS sensory domain Fis family K12146 hyfR; hydrogenase-4 transcriptional activator
D SO_1774 sdaR; transcriptional repressor of glycerate utilization SdaR K02647 cdaR; carbohydrate diacid regulator
D SO_3862 modE; transcriptional repressor of molybdate and molybdenium cofactor metabolism ModE K02019 modE; molybdate transport system regulatory protein
D SO_A0068 toxin-antitoxin system antidote transcriptional repressor Xre family K07726 K07726; putative transcriptional regulator
D SO_A0185 toxin-antitoxin system antidote transcriptional repressor Xre family K07726 K07726; putative transcriptional regulator
D SO_2989 cro; Lambda phage transcriptional repressor of early genes Cro K07729 K07729; putative transcriptional regulator
D SO_4057 metJ; transcriptional repressor of methionine metabolism MetJ K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
D SO_3774 putA; bifunctional proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D SO_1099 bolA; global transcriptional regulator BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D SO_4755 parB; chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D SO_A0031 ParB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D SO_A0096 parB; plasmid partition protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D SO_3194 rfaH; transcriptional antiterminator RfaH K05785 rfaH; transcriptional antiterminator RfaH
D SO_0769 argR; arginine-responsive transcriptional repressor of arginine metabolism ArgR K03402 argR; transcriptional regulator of arginine metabolism
D SO_1669 tyrR; Sigma54-dependent transcriptional activator of amino acid degradation TyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D SO_1878 gcvR; glycine cleavage system transcriptional repressor GcvR K03567 gcvR; glycine cleavage system transcriptional repressor
D SO_1806 pspF; Sigma 54-dependent transcriptional activator of phage shock response PspF K03974 pspF; psp operon transcriptional activator
D SO_1809 pspC; phage shock protein C PspC K03973 pspC; phage shock protein C
D SO_1935 rnk; regulator of nucleoside diphosphate kinase Rnk K06140 rnk; regulator of nucleoside diphosphate kinase
D SO_4821 alpA; Mu phage lytic protein AlpA K07733 alpA; prophage regulatory protein
D SO_3346 protein of unknown function DUF179 K07735 algH; putative transcriptional regulator
D SO_0874 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D SO_3470 nrdR; transcriptional repressor of deoxyribonucleotide biosynthesis NrdR K07738 nrdR; transcriptional repressor NrdR
D SO_4228 mraZ; protein MraZ K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:son03021]
D SO_0256 rpoA; DNA-directed RNA polymerase alpha subunit RpoA K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D SO_0224 rpoB; DNA-directed RNA polymerase beta subunit RpoB K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D SO_0225 rpoC; DNA-directed RNA polymerase beta' subunit RpoC K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D SO_0360 rpoZ; DNA-directed RNA polymerase omega subunit RpoZ K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D SO_1284 rpoD; RNA polymerase sigma-70 factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D SO_3432 rpoS; RNA polymerase sigma-38 factor RpoS K03087 rpoS; RNA polymerase nonessential primary-like sigma factor
D SO_1342 rpoE; RNA polymerase sigma factor 24 RpoE K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D SO_1986 RNA polymerase sigma factor ECF family 11 K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D SO_3096 RNA polymerase sigma factor ECF family 28 K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D SO_3551 RNA polymerase sigma-70 factor ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D SO_3840 RNA polymerase sigma-70 factor ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D SO_4583 rpoH; RNA polymerase sigma-32 factor RpoH K03089 rpoH; RNA polymerase sigma-32 factor
D SO_3961 rpoN; RNA polymerase sigma-54 factor RpoN K03092 rpoN; RNA polymerase sigma-54 factor
D SO_3210 fliA; RNA polymerase sigma-28 factor for flagellar operon FliA K02405 fliA; RNA polymerase sigma factor FliA
D SO_0575 rapA; RNA polymerase-associated helicase RapA K03580 hepA; ATP-dependent helicase HepA [EC:5.6.2.-]
D SO_1203 nusA; N utilization substance protein A NusA K02600 nusA; transcription termination/antitermination protein NusA
D SO_3465 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D SO_0219 nusG; transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D SO_0611 sspA; transcpriptional activator SspA K03599 sspA; stringent starvation protein A
D SO_0612 sspB; stringent starvation protein b SspB K03600 sspB; stringent starvation protein B
D SO_1343 rseA; sigma-E factor negative regulatory protein RseA K03597 rseA; sigma-E factor negative regulatory protein RseA
D SO_1344 rseB; sigma E factor regulatory protein RseB K03598 rseB; sigma-E factor negative regulatory protein RseB
D SO_1345 rseC; sigma E factor positive regulatory protein RseC K03803 rseC; sigma-E factor negative regulatory protein RseC
D SO_0874 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D SO_1191 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D SO_4631 greB; transcription elongation factor GreB K04760 greB; transcription elongation factor GreB
D SO_0405 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D SO_0339 rofA; modulator of rho-dependent transcriptional termination RofA K19000 rof; Rho-binding antiterminator
C 03019 Messenger RNA biogenesis [BR:son03019]
D SO_2785 rne; ribonuclease E Rne K08300 rne; ribonuclease E [EC:3.1.26.12]
D SO_4094 rng; ribonuclease G Rng K08301 rng; ribonuclease G [EC:3.1.26.-]
D SO_1348 rnc; ribonuclease III Rnc K03685 rnc; ribonuclease III [EC:3.1.26.3]
D SO_3935 rnr; 3'-5' exoribonuclease R Rnr K12573 rnr; ribonuclease R [EC:3.1.13.1]
D SO_0592 orn; 3'-5' oligoribonuclease Orn K13288 orn; oligoribonuclease [EC:3.1.-.-]
D SO_0407 rhlB; ATP-dependent RNA helicase RhlB K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
D SO_3783 rhlE; ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D SO_1501 ATP-dependent RNA helicase DEAD box family K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D SO_2571 ATP-dependent RNA helicase DEAD box family K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D SO_3125 ATP-dependent RNA helicase DEAD box family K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D SO_1383 ATP-dependent RNA helicase DEAD box family K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D SO_3388 ATP-dependent RNA helicase DEAD box family K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D SO_4034 deaD; ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D SO_4241 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D SO_2380 ATP-dependent DNA helicase RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D SO_3440 eno; enolase Eno K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D SO_1209 pnpA; polyribonucleotide nucleotidyltransferase PnpA K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D SO_0405 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D SO_1126 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D SO_0704 groEL; 60 kDa chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D SO_0603 hfq; RNA-binding pleiotrophic regulator Hfq K03666 hfq; host factor-I protein
D SO_0872 pcnB; polyA polymerase PcnB K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D SO_1331 rppH; RNA pyrophosphohydrolase RppH K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D SO_3426 csrA; carbon storage regulator CsrA K03563 csrA; carbon storage regulator
D SO_4116 mshH; signalling protein with GGDEF and EAL domains MshH K18765 csrD; RNase E specificity factor CsrD
D SO_2567 Rra-like regulator of RNAse E K02553 rraA; regulator of ribonuclease activity A
D SO_4197 rraA; ribonuclease E inhibitor RraA K02553 rraA; regulator of ribonuclease activity A
D SO_0568 rraB; ribonuclease E inhibitor RraB K09893 rraB; regulator of ribonuclease activity B
D SO_3964 yhbJ; GlmZ repressor YhbJ K06958 rapZ; RNase adapter protein RapZ
D SO_2229 hrpA; ATP-dependent helicase HrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
D SO_0632 hrpB; ATP-dependent helicase HrpB K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6]
D SO_m009 csrB2; CsrB/RsmB K18515 csrB; small regulatory RNA CsrB
D SO_m006 spf; spot 42 RNA K18527 spf; small regulatory RNA Spot 42
C 03041 Spliceosome
C 03011 Ribosome [BR:son03011]
D SO_2402 rpsA; ribosomal protein S1 RpsA K02945 RP-S1; small subunit ribosomal protein S1
D SO_1629 rpsB; 30S ribosomal protein S2 RpsB K02967 RP-S2; small subunit ribosomal protein S2
D SO_0237 rpsC; 30S ribosomal protein S3 RpsC K02982 RP-S3; small subunit ribosomal protein S3
D SO_0255 rpsD; 30S ribosomal protein S4 RpsD K02986 RP-S4; small subunit ribosomal protein S4
D SO_0248 rpsE; 30S ribosomal protein S5 RpsE K02988 RP-S5; small subunit ribosomal protein S5
D SO_3930 rpsF; 30S ribosomal protein S6 RpsF K02990 RP-S6; small subunit ribosomal protein S6
D SO_0227 rpsG; 30S ribosomal protein S7 RpsG K02992 RP-S7; small subunit ribosomal protein S7
D SO_0245 rpsH; 30S ribosomal protein S8 RpsH K02994 RP-S8; small subunit ribosomal protein S8
D SO_3939 rpsI; 30S ribosomal protein S9 RpsI K02996 RP-S9; small subunit ribosomal protein S9
D SO_0230 rpsJ; 30S ribosomal protein S10 RpsJ K02946 RP-S10; small subunit ribosomal protein S10
D SO_0254 rpsK; 30S ribosomal protein S11 RpsK K02948 RP-S11; small subunit ribosomal protein S11
D SO_0226 rpsL; 30S ribosomal protein S12p RpsL K02950 RP-S12; small subunit ribosomal protein S12
D SO_0253 rpsM; 30S ribosomal protein S13 RpsM K02952 RP-S13; small subunit ribosomal protein S13
D SO_0244 rpsN; 30S ribosomal protein S14 RpsN K02954 RP-S14; small subunit ribosomal protein S14
D SO_1207 rpsO; 30S ribosomal protein S15 RpsO K02956 RP-S15; small subunit ribosomal protein S15
D SO_1357 rpsP; 30S ribosomal protein S16 RpsP K02959 RP-S16; small subunit ribosomal protein S16
D SO_0240 rpsQ; 30S ribosomal protein S17 RpsQ K02961 RP-S17; small subunit ribosomal protein S17
D SO_3928 rpsR; 30S ribosomal protein S18 RpsR K02963 RP-S18; small subunit ribosomal protein S18
D SO_0235 rpsS; 30S ribosomal protein S19 RpsS K02965 RP-S19; small subunit ribosomal protein S19
D SO_3537 rpsT; 30S ribosomal protein S20 RpsT K02968 RP-S20; small subunit ribosomal protein S20
D SO_1288 rpsU; 30S ribosomal protein S21 RpsU K02970 RP-S21; small subunit ribosomal protein S21
D SO_0221 rplA; 50S ribosomal protein L1 RplA K02863 RP-L1; large subunit ribosomal protein L1
D SO_0234 rplB; 50S ribosomal protein L2 RplB K02886 RP-L2; large subunit ribosomal protein L2
D SO_0231 rplC; 50S ribosomal protein L3 RplC K02906 RP-L3; large subunit ribosomal protein L3
D SO_0232 rplD; 50S ribosomal protein L4 RplD K02926 RP-L4; large subunit ribosomal protein L4
D SO_0243 rplE; 50S ribosomal protein L5 RplE K02931 RP-L5; large subunit ribosomal protein L5
D SO_0246 rplF; 50S ribosomal protein L6 RplF K02933 RP-L6; large subunit ribosomal protein L6
D SO_3927 rplI; 50S ribosomal protein L9 RplI K02939 RP-L9; large subunit ribosomal protein L9
D SO_0222 rplJ; 50S ribosomal protein L10 RplJ K02864 RP-L10; large subunit ribosomal protein L10
D SO_0220 rplK; 50S ribosomal protein L11 RplK K02867 RP-L11; large subunit ribosomal protein L11
D SO_0223 rplL; 50S ribosomal protein L7/L12 RplL K02935 RP-L7; large subunit ribosomal protein L7/L12
D SO_3940 rplM; 50S ribosomal protein L13 RplM K02871 RP-L13; large subunit ribosomal protein L13
D SO_0241 rplN; 50S ribosomal protein L14 RplN K02874 RP-L14; large subunit ribosomal protein L14
D SO_0250 rplO; 50S ribosomal protein L15 RplO K02876 RP-L15; large subunit ribosomal protein L15
D SO_0238 rplP; 50S ribosomal protein L16 RplP K02878 RP-L16; large subunit ribosomal protein L16
D SO_0257 rplQ; 50S ribosomal protein L17 RplQ K02879 RP-L17; large subunit ribosomal protein L17
D SO_0247 rplR; 50S ribosomal protein L18 RplR K02881 RP-L18; large subunit ribosomal protein L18
D SO_1360 rplS; 50S ribosomal protein L19 RplS K02884 RP-L19; large subunit ribosomal protein L19
D SO_2302 rplT; 50S ribosomal protein L20 RplT K02887 RP-L20; large subunit ribosomal protein L20
D SO_3652 rplU; 50S ribosomal protein L21 RplU K02888 RP-L21; large subunit ribosomal protein L21
D SO_0236 rplV; 50S ribosomal protein L22 RplV K02890 RP-L22; large subunit ribosomal protein L22
D SO_0233 rplW; 50S ribosomal protein L23 RplW K02892 RP-L23; large subunit ribosomal protein L23
D SO_0242 rplX; 50S ribosomal protein L24 RplX K02895 RP-L24; large subunit ribosomal protein L24
D SO_3651 rpmA; 50S ribosomal protein L27 RpmA K02899 RP-L27; large subunit ribosomal protein L27
D SO_4247 rpmB; 50S ribosomal protein L28 RpmB K02902 RP-L28; large subunit ribosomal protein L28
D SO_0239 rpmC; 50S ribosomal protein L29 RpmC K02904 RP-L29; large subunit ribosomal protein L29
D SO_0249 rpmD; 50S ribosomal protein L30 RpmD K02907 RP-L30; large subunit ribosomal protein L30
D SO_4120 rpmE; 50S ribosomal protein L31 RpmE K02909 RP-L31; large subunit ribosomal protein L31
D SO_2780 rpmF; 50S ribosomal protein L32 RpmF K02911 RP-L32; large subunit ribosomal protein L32
D SO_4246 rpmG; 50S ribosomal protein L33 RpmG K02913 RP-L33; large subunit ribosomal protein L33
D SO_0007 rpmH; 50S ribosomal protein L34 RpmH K02914 RP-L34; large subunit ribosomal protein L34
D SO_2301 rpmI; 50S ribosomal protein L35 RpmI K02916 RP-L35; large subunit ribosomal protein L35
D SO_0252 rpmJ; 50S ribosomal protein L36 RpmJ K02919 RP-L36; large subunit ribosomal protein L36
D SO_2112 rplY; 50S ribosomal protein L25 RplY K02897 RP-L25; large subunit ribosomal protein L25
D SO_r003 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SO_r006 rrfB; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SO_r009 rrfC; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SO_r010 rrfD; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SO_r013 rrfE; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SO_r016 rrfF; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SO_r019 rrfJ; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SO_r022 rrfH; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SO_r025 rrfI; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SO_r028 rrfG; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SO_r001 rrsA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SO_r004 rrsB; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SO_r007 rrsC; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SO_r012 rrsD; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SO_r015 rrsE; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SO_r018 rrsF; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SO_r021 rrsG; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SO_r024 rrsH; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SO_r027 rrsI; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SO_r002 rrlA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SO_r005 rrlB; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SO_r008 rrlC; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SO_r011 rrlD; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SO_r014 rrlE; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SO_r017 rrlF; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SO_r020 rrlG; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SO_r023 rrlH; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SO_r026 rrlI; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:son03009]
D SO_1348 rnc; ribonuclease III Rnc K03685 rnc; ribonuclease III [EC:3.1.26.3]
D SO_3973 Ser/Thr protein kinase K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D SO_0592 orn; 3'-5' oligoribonuclease Orn K13288 orn; oligoribonuclease [EC:3.1.-.-]
D SO_1349 era; 30S ribosome assembly GTPase Era K03595 era; GTPase
D SO_3649 obgE; 50S ribosome assembly GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
D SO_0874 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D SO_1203 nusA; N utilization substance protein A NusA K02600 nusA; transcription termination/antitermination protein NusA
D SO_3465 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D SO_0219 nusG; transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D SO_1085 RNA pseudouridylate synthase family protein K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D SO_3583 16S rRNA pseudouridine synthase RsuA family K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D SO_3843 rsuA; 16S rRNA pseudouridine516 synthase RsuA K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D SO_3639 rsmA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase RsmA K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D SO_0030 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase RsmB K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D SO_1575 rsmB; tRNA/rRNA cytosine-C5-methylase RsmB K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D SO_2215 ribosomal RNA small subunit methyltransferase RsmB family K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D SO_0828 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase RsmC K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D SO_4587 rsmD; 16S rRNA (guanine966-N2)-methyltransferase RsmD K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D SO_0832 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase RsmE K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D SO_2609 rsmF; 16S rRNA (cytosine1407-C5)-methyltransferase RsmF K11392 rsmF; 16S rRNA (cytosine1407-C5)-methyltransferase [EC:2.1.1.178]
D SO_4757 rsmG; 16S rRNA (guanine527-N7)-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D SO_4227 rsmH; 16S rRNA (cytosine1402-N4)-methyltransferase RsmH K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D SO_0301 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase RsmI K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D SO_4658 rsmJ; 16S rRNA (guanine1516-G2)-methyltransferase RsmJ K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
D SO_2788 rlmA; 23S rRNA (guanine745-N1)-methyltransferase RlmA K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D SO_1294 ribosomal RNA large subunit methyltransferase A K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D SO_3934 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D SO_1196 rrmJ; 23S rRNA (uridine2552-2'-O)-methyltransferase RrmJ K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D SO_0134 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase RlmF K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181]
D SO_1097 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase RlmG K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174]
D SO_1169 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase RlmH K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D SO_2919 S-adenosylmethionine-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D SO_1149 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase RlmI K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D SO_2451 SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D SO_4659 yhiR; exogenous DNA processing protein YhiR K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D SO_1851 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase RlmL K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D SO_1536 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase RlmM K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D SO_3315 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D SO_3456 rumA; 23S rRNA (uracil1939-C5)-methyltransferase RumA K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D SO_0980 rumB; 23S rRNA (uracil747-C5)-methyltransferase RumB K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189]
D SO_3118 23S rRNA pseudouridine synthase RluA family K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D SO_3798 rluA; 23S rRNA pseudouridine746 synthase RluA K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D SO_4181 RNA pseudouridylate synthase family protein K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D SO_4426 tRNA pseudouridylate synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D SO_2937 rluB; 23S rRNA pseudouridine2605 synthase RluB K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D SO_2784 rluC; 23S rRNA pseudouridine955/2504/2580 synthase RluC K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D SO_3579 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase RluD K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D SO_2630 rluE; 23S rRNA pseudouridine2457 synthase RluE K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D SO_1160 rimI; ribosomal-protein-alanine acetyltransferase RimI K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D SO_2270 rimK; ribosomal protein S6 glutaminyl transferase RimK K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
D SO_0546 rimK; ribosomal protein S6 glutaminyl transferase RimK K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
D SO_1358 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
D SO_4072 rimO; ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D SO_0795 ycaO; protein involved in RimO-mediated beta-methylthiolation of ribosomal protein S12 YcaO K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
D SO_0395 prmA; ribosomal protein L11 methyltransferase PrmA K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D SO_3080 prmB; 50S subunit L3 protein glutamine methyltransferase PrmB K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
D SO_2636 cupin 4 family protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
D SO_2785 rne; ribonuclease E Rne K08300 rne; ribonuclease E [EC:3.1.26.12]
D SO_4094 rng; ribonuclease G Rng K08301 rng; ribonuclease G [EC:3.1.26.-]
D SO_3347 yqgF; Holliday junction resolvase YqgF K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D SO_0897 dbpA; ATP-dependent RNA helicase DbpA K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
D SO_4034 deaD; ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D SO_0947 srmB; ATP-dependent RNA helicase SrmB K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7]
D SO_0591 rsgA; 30S ribosome assembly GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D SO_3308 der; 50S ribosome assembly GTPase Der K03977 engA; GTPase
D SO_2590 rbgA; 50s ribosomal subunit maturation GTPase RbgA K14540 rbgA; ribosome biogenesis GTPase A
D SO_0604 hflX; 50S ribosome assembly GTPase HflX K03665 hflX; GTPase
D SO_0037 rimN; threonylcarbamoyladenosine t(6)A tRNA modification protein RimN K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D SO_0359 spoT; bifunctional ppGpp phosphohydrolase/GTP diphosphokinase SpoT K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D SO_1205 rbfA; ribosome-binding factor A RbfA K02834 rbfA; ribosome-binding factor A
D SO_1202 rimP; ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP
D SO_1835 S4 RNA-binding domain protein K14761 rlbA; ribosome-associated protein
D SO_1170 iojap-like ribosome-associated protein K09710 ybeB; ribosome-associated protein
D SO_1179 ybeY; rRNA maturation factor YbeY K07042 ybeY; probable rRNA maturation factor
D SO_1195 yhbY; putative RNA-binding protein YhbY K07574 yhbY; RNA-binding protein
D SO_2832 protein of unknown function DUF2810 K14762 yibL; ribosome-associated protein
D SO_4079 protein of unknown function DUF615 K09889 yjgA; ribosome-associated protein
D SO_1855 rmf; ribosome modulation factor Rmf K03812 rmf; ribosome modulation factor
D SO_3962 yhbH; sigma-54 modulation protein/ribosome-associated factor YhbH K05808 hpf; ribosome hibernation promoting factor
D SO_3422 yfiA; ribosomal associated cold shock response protein YfiA K05809 raiA; ribosome-associated inhibitor A
D SO_3403 raiA; ribosome-associated inhibitor A RaiA K05809 raiA; ribosome-associated inhibitor A
D SO_1185 ychF; GTP-binding and nucleic acid-binding protein YchF K06942 ychF; ribosome-binding ATPase
D SO_2781 protein of unknown function DUF17 K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:son03016]
D SO_4599 ribonuclease T2 K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19]
D SO_1296 cca; tRNA nucleotidyltransferase Cca K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D SO_3130 gltX; glutamyl-tRNA synthetase GltX K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D SO_3154 proS; prolyl-tRNA synthetase ProS K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D SO_3532 ileS; isoleucyl-tRNA synthetase IleS K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D SO_1174 leuS; leucyl-tRNA synthetase LeuS K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D SO_2619 metG; methionyl-tRNA synthetase MetG K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D SO_1786 glnS; glutaminyl-tRNA synthetase GlnS K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D SO_4123 argS; arginyl-tRNA synthetase ArgS K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D SO_0992 lysS; lysyl-tRNA synthetase LysS K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D SO_2433 aspS; aspartyl-tRNA synthetase AspS K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D SO_3428 alaS; alanyl-tRNA synthetase AlaS K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D SO_2218 asnS; asparaginyl-tRNA synthetase AsnS K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D SO_2299 thrS; threonyl-tRNA synthetase ThrS K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D SO_2310 serS; seryl-tRNA synthetase SerS K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D SO_1791 cysS; cysteinyl-tRNA synthetase CysS K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D SO_3424 valS; valyl-tRNA synthetase ValS K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D SO_3311 hisS; histidyl-tRNA synthetase HisS K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D SO_2085 pheS; phenylalanyl-tRNA synthetase alpha subunit PheS K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D SO_2086 pheT; phenylalanyl-tRNA synthetase beta subunit PheT K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D SO_1315 tyrS; tyrosyl-tRNA synthetase TyrS K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D SO_0294 trpS; tryptophanyl-tRNA synthetase TrpS K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D SO_4398 dtd; D-tyrosyl-tRNA(Tyr) deacylase Dtd K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D SO_2723 hinT; purine nucleoside phosphoramidase HinT K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D SO_3367 trmB; tRNA (guanine-N(7)-)-methyltransferase TrmB K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D SO_3151 yaeB; putative methyltransferase YaeB K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-]
D SO_3068 truA; tRNA pseudouridine38-40 synthase TruA K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D SO_1206 truB; tRNA pseudouridine55 synthase TruB K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D SO_3436 truD; tRNA pseudouridine13 synthase TruD K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D SO_2264 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D SO_0037 rimN; threonylcarbamoyladenosine t(6)A tRNA modification protein RimN K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D SO_0602 miaA; tRNA dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D SO_0003 mnmE; tRNA uridine 5-carboxymethylaminomethyl modification system GTPase subunit MnmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D SO_4758 mnmG; tRNA uridine 5-carboxymethylaminomethyl modification system MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D SO_0196 selD; selenophosphate synthase SelD K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D SO_1655 cysQ; 3'(2')5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D SO_0191 cysQ; 3'(2')5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D SO_0006 rnpA; ribonuclease P protein RnpA K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D SO_m001 rnpB; RNaseP RNA K01978 rnpB; M1 RNA
D SO_2755 rnt; ribonuclease T Rnt K03683 rnt; ribonuclease T [EC:3.1.13.-]
D SO_4256 rph; ribonuclease PH Rph K00989 rph; ribonuclease PH [EC:2.7.7.56]
D SO_2580 rnd; ribonuclease D Rnd K03684 rnd; ribonuclease D [EC:3.1.13.5]
D SO_0627 ligT; 2'-5' RNA ligase LigT K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
D SO_3472 yjjK; REG family ATPase YjjK K06020 ettA; energy-dependent translational throttle protein EttA
D SO_0015 glyQ; glycyl-tRNA synthetase alpha subunit GlyQ K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D SO_0014 glyS; glycyl-tRNA synthetase beta subunit GlyS K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D SO_0873 yadB; glutamyl-Q-tRNA-Asp synthetase YadB K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D SO_1124 ybaK; aminoacyl-tRNA deacylase YbaK K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D SO_3291 tadA; tRNA-specific adenosine deaminase TadA K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D SO_3912 dusA; tRNA2fMet-dihydrouridine21 synthase DusA K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
D SO_0394 dusB; tRNA-dihydrouridine synthase DusB K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D SO_2006 dusC; tRNA-dihydrouridine synthase C DusC K05541 dusC; tRNA-dihydrouridine synthase C [EC:1.-.-.-]
D SO_1181 miaB; tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D SO_2435 cmoA; tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase CmoA K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
D SO_2436 cmoB; tRNA (5-methoxyuridine) 34 synthase CmoD K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-]
D SO_0558 smtA; SAM-dependent methyltransferase SmtA K06219 smtA; tRNA 5-carboxymethoxyuridine methyltransferase [EC:2.1.1.-]
D SO_0206 trmA; tRNA (uracil-5-)-methyltransferase TrmA K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35]
D SO_1359 trmD; tRNA (guanine-N1)-methyltransferase TrmD K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D SO_2261 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase TrmJ K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200]
D SO_2449 trmK; tRNA (adenine22-N1)-methyltransferase TrmK K06967 trmK; tRNA (adenine22-N1)-methyltransferase [EC:2.1.1.217]
D SO_4529 trmL; tRNA (cytidine34-2'-O)-methyltransferase TrmL K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D SO_0948 yfiC; tRNA (adenine-N(6)-)-methyltransferase YfiC K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223]
D SO_1620 truC; tRNA pseudouridine65 synthase TruC K06175 truC; tRNA pseudouridine65 synthase [EC:5.4.99.26]
D SO_3118 23S rRNA pseudouridine synthase RluA family K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D SO_3798 rluA; 23S rRNA pseudouridine746 synthase RluA K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D SO_4181 RNA pseudouridylate synthase family protein K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D SO_4426 tRNA pseudouridylate synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D SO_2633 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D SO_2354 ydaO; tRNA(Cytosine32)-2-thiocytidine synthetaseYdaO K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D SO_0019 tusA; tRNA 2-thiouridine synthesizing protein TusA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D SO_2868 SirA-like protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D SO_2378 tusB; tRNA 2-thiouridine synthesizing protein B subunit TusB K07237 tusB; tRNA 2-thiouridine synthesizing protein B
D SO_2377 tusC; tRNA 2-thiouridine synthesizing protein C subunit TusC K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D SO_2376 tusD; tRNA 2-thiouridine synthesizing protein D subunit TusD K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D SO_2379 tusE; tRNA 2-thiouridine synthesizing protein sulfur mediator TusE K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D SO_2266 iscA; FeS cluster assembly acessory protein IscA K13628 iscA; iron-sulfur cluster assembly protein
D SO_0861 ygfZ; folate-dependent protein involved in synthesis and repair of FeS clusters YgfZ K06980 ygfZ; tRNA-modifying protein YgfZ
D SO_1788 miaE; tRNA-(MS(2)IO(6)A)-hydroxylase MiaE K06169 miaE; tRNA 2-(methylsulfanyl)-N6-isopentenyladenosine37 hydroxylase [EC:1.14.99.69]
D SO_3073 mnmC; bifunctional 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
D SO_3114 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase QueA K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D SO_2503 queC; queuosine biosynthesis ATPase QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D SO_2501 queE; queuosine biosynthesis radical activating enzyme QueE K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D SO_1608 queF; NADPH-dependent preQ0 reductase QueF K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D SO_3861 yjeS; 4Fe-4S binding protein YjeS K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D SO_0195 selU; selenophosphate-dependent tRNA 2-selenouridine synthase SelU K06917 selU; tRNA 2-selenouridine synthase [EC:2.9.1.3]
D SO_3113 tgt; queuine tRNA-ribosyltransferase Tgt K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D SO_1531 thiI; thiazole biosynthesis/tRNA modification proteinThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D SO_1645 tilS; tRNA(Ile)-lysidine synthase TilS K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D SO_2586 yeaZ; YgjD protease YeaZ K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D SO_1289 ygiD; essential endopeptidase YgiD K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D SO_0599 yjeE; ATPase YjeE K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D SO_3895 HesA/MoeB/ThiF family protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D SO_3935 rnr; 3'-5' exoribonuclease R Rnr K12573 rnr; ribonuclease R [EC:3.1.13.1]
D SO_1209 pnpA; polyribonucleotide nucleotidyltransferase PnpA K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:son03012]
D SO_3345 yciH; translation initiation factor protein YciH K03113 EIF1; translation initiation factor 1
D SO_1204 infB; translation initiation factor IF-2 InfB K02519 infB; translation initiation factor IF-2
D SO_2300 infC; translation initiation factor IF-3 InfC K02520 infC; translation initiation factor IF-3
D SO_0885 yheS; REG family ATPase YheS K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D SO_1630 tsf; translation elongation factor EF-Ts Tsf K02357 tsf; elongation factor Ts
D SO_0217 tufB; translation elongation factor Tu TufB K02358 tuf; elongation factor Tu
D SO_0229 tufA; translation elongation factor Tu TufA K02358 tuf; elongation factor Tu
D SO_0842 translation elongation factor G FusA-like protein K02355 fusA; elongation factor G
D SO_0228 fusA; translation elongation factor G FusA K02355 fusA; elongation factor G
D SO_0106 selB; selenocysteine-specific translation elongation factor SelB K03833 selB; selenocysteine-specific elongation factor
D SO_3833 prfA; peptide chain release factor 1 PrfA K02835 prfA; peptide chain release factor 1
D SO_1632 frr; ribosome recycling factor Frr K02838 frr; ribosome recycling factor
D SO_3832 prmC; peptide release factor glutamine N5-methylase PrmC K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D SO_1184 pth; peptidyl-tRNA hydrolase Pth K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D SO_2625 infA; translation initiation factor IF-1 InfA K02518 infA; translation initiation factor IF-1
D SO_2328 efp; translation elongation factor P Efp K02356 efp; elongation factor P
D SO_0991 prfB; peptide chain release factor 2 PrfB K02836 prfB; peptide chain release factor 2
D SO_1211 prfC; peptide chain release factor 3 PrfC K02837 prfC; peptide chain release factor 3
D SO_4073 arfA; alternative ribosome-rescue factor ArfA K09890 arfA; alternative ribosome-rescue factor
D SO_0513 yaeJ; stop codon-independent peptidyl-tRNA hydrolyzing factor YaeJ K15034 yaeJ; ribosome-associated protein
C 03110 Chaperones and folding catalysts [BR:son03110]
D SO_2626 clpA; ATP-dependent Clp protease ATPase and specificity subunit ClpA K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA
D SO_3577 clpB; stress-induced multi-chaperone system component ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D SO_1795 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D SO_4163 hslU; HlsVU protease ATPase component HslU K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D SO_2016 htpG; heat shock chaperone HtpG K04079 HSP90A; molecular chaperone HtpG
D SO_1126 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D SO_2268 hscA; chaperone protein HscA K04044 hscA; molecular chaperone HscA
D SO_2189 yegD; hsp70 family protein YegD K04046 yegD; hypothetical chaperone protein
D SO_0704 groEL; 60 kDa chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D SO_1127 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D SO_3633 djlA; DnaK co-chaperone DjlA K05801 djlA; DnaJ like chaperone protein
D SO_2267 hscB; co-chaperone Hsc20 HscB K04082 hscB; molecular chaperone HscB
D SO_0163 hslO; redox regulated chaperone HslO K04083 hslO; molecular chaperone Hsp33
D SO_1524 grpE; heat shock nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE
D SO_2277 ibpA; 16 kDa heat shock protein A IbpA K04080 ibpA; molecular chaperone IbpA
D SO_0164 hslR; heat shock protein HslR K04762 hslR; ribosome-associated heat shock protein Hsp15
D SO_0703 groES; 10 kDa chaperonin GroES K04078 groES; chaperonin GroES
D SO_1197 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D SO_4753 atpB; ATP synthase F0 A subunit AtpB K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D SO_0052 secB; protein export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D SO_4476 cpxP; periplasmic stress adaptor protein CpxP K06006 cpxP; periplasmic protein CpxP/Spy
D SO_3907 cytochrome oxidase copper metallochaperone K09796 pccA; periplasmic copper chaperone A
D SO_2089 hypA; NiFe hydrogenase nickel incorporation protein HypA K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF
D SO_2093 hypB; Ni2+-binding GTPase involved in regulation of NiFe hydrogenase expression and maturation HypB K04652 hypB; hydrogenase nickel incorporation protein HypB
D SO_1231 torD; TorA-specific chaperone TorD K03533 torD; TorA specific chaperone
D SO_1431 dmsG; extracellular dimethyl sulfoxide/manganese oxide reductase chaperone DmsG K23349 dmsD; putative dimethyl sulfoxide reductase chaperone
D SO_3106 sapSH; extracellular serine alkaline protease SapSH K14645 K14645; serine protease [EC:3.4.21.-]
D SO_3509 hexB; beta-N-acetylhexosaminidase HexB K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D SO_3812 ppiA; periplasmic peptidyl-prolyl cis-trans isomerase PpiA K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D SO_1790 ppiB; cytoplasmic peptidyl-prolyl cis-trans isomerase PpiB K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D SO_2572 ppiB; cytoplasmic peptidyl-prolyl cis-trans isomerase PpiB K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D SO_1798 ppiD; peptidyl-prolyl cis-trans isomerse PpiD K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D SO_1065 fklB; peptidyl-prolyl cis-trans isomerase FklB K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]
D SO_0481 sirI; cytochrome c maturation system peptidyl-prolyl cis-trans isomerase SirI K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]
D SO_1139 fklB; peptidyl-prolyl cis-trans isomerase FklB K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8]
D SO_3530 fkpB; peptidyl-prolyl cis-trans isomerase FkpB K03774 slpA; FKBP-type peptidyl-prolyl cis-trans isomerase SlpA [EC:5.2.1.8]
D SO_3417 slyD; peptidyl-prolyl cis-trans isomerase SlyD K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D SO_1995 peptidyl-prolyl cis-trans isomerase FKBP family K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D SO_0635 ppiC; peptidyl-prolyl cis-trans isomerase PpiC K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
D SO_1832 ppiC; peptidyl-prolyl cis-trans isomerase PpiC K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
D SO_3637 surA; outer membrane protein maturation factor peptidyl-prolyl cis-trans isomerase SurA K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D SO_0406 trxA; thioredoxin 1 TrxA K03671 TXN; thioredoxin
D SO_0452 trxC; thioredoxin 2 TrxC K03672 trxC; thioredoxin 2 [EC:1.8.1.8]
D SO_2017 heat shock response protein K05838 ybbN; putative thioredoxin
D SO_2745 grxA; glutaredoxin GrxA K03674 grxA; glutaredoxin 1
D SO_2880 grxD; monothiol glutaredoxin GrxD K07390 grxD; monothiol glutaredoxin
D SO_0333 dsbA; periplasmic thiol:disulfide interchange protein DsbA K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D SO_2860 thiol:disulfide interchange protein DsbA family K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D SO_2887 dsbB; disulfide bond formation protein DsbB K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9]
D SO_0951 dsbC; thiol:disulfide interchange protein DsbC K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D SO_0696 dsbD; protein-disulfide reductase DsbD K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16]
D SO_0267 ccmG; cytochrome c maturation system membrane anchored thioredoxin CcmG K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE
C 04131 Membrane trafficking [BR:son04131]
D SO_2274 ndk; nucleoside diphosphate kinase Ndk K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D SO_1377 putative negative regulator of univalent cation permeability K07192 FLOT; flotillin
D SO_2345 gapA; glyceraldehyde-3-phosphate dehydrogenase (NAD+) GapA K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D SO_2347 gapB; glyceraldehyde-3-phosphate dehydrogenase GapB K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D SO_2491 pykA; pyruvate kinase II PykA K00873 PK; pyruvate kinase [EC:2.7.1.40]
D SO_2016 htpG; heat shock chaperone HtpG K04079 HSP90A; molecular chaperone HtpG
C 04121 Ubiquitin system [BR:son04121]
C 03051 Proteasome [BR:son03051]
D SO_2016 htpG; heat shock chaperone HtpG K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:son03032]
D SO_2560 rnhA; ribonuclease HI RnhA K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D SO_3006 dcm; Lambda phage type II restriction modification system cytosine-5 DNA methyltransferase Dcm K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D SO_1863 histone-like DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha
D SO_1797 hupB; histone-like DNA-binding protein HupB K03530 hupB; DNA-binding protein HU-beta
D SO_0548 histone-like DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D SO_2087 ihfA; integration host factor alpha subunit IhfA K04764 ihfA; integration host factor subunit alpha
D SO_2401 ihfB; integration host factor beta subunit IhfB K05788 ihfB; integration host factor subunit beta
D SO_0008 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D SO_3917 dnaB; replicative DNA helicase DnaB K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D SO_1286 dnaG; DNA primase DnaG K02316 dnaG; DNA primase [EC:2.7.7.101]
D SO_4028 ssb; single-strand binding protein Ssb K03111 ssb; single-strand DNA-binding protein
D SO_1644 dnaE; DNA polymerase III alpha subunit DnaE K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D SO_0009 dnaN; DNA polymerase III beta subunit DnaN K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D SO_3423 holC; DNA polymerase III chi subunit HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D SO_1172 holA; DNA polymerase III delta subunit HolA K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D SO_2612 holB; DNA polymerase III delta' subunit HolB K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D SO_2245 exonuclease family protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D SO_2559 dnaQ; DNA polymerase III epsilon subunit DnaQ K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D SO_2855 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D SO_2013 dnaX; DNA polymerase III gamma and tau subunits DnaX K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D SO_1643 rnhB; ribonuclease HII RnhB K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D SO_4669 polA; DNA polymerase I PolA K02335 polA; DNA polymerase I [EC:2.7.7.7]
D SO_2896 ligA; DNA ligase NAD-dependent LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D SO_0289 dam; N6-adenine DNA methyltransferase Dam K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D SO_0690 Mu phage DNA adenine methylase Dam family K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D SO_2335 seqA; negative regulator of DNA replication SeqA K03645 seqA; negative modulator of initiation of replication
D SO_2877 hda; DnaA regulatory inactivator Hda K10763 hda; DnaA-homolog protein
D SO_2411 gyrA; DNA gyrase subunit GyrA K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D SO_0011 gyrB; DNA gyrase B subunit GyrB K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D SO_3897 parC; DNA topoisomerase IV A subunit ParC K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D SO_3899 parE; DNA topoisomerase IV B subunit ParE K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D SO_2705 topA; DNA topoisomerase I TopA K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D SO_3061 topB; DNA topoisomerase III TopB K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:son03036]
D SO_3006 dcm; Lambda phage type II restriction modification system cytosine-5 DNA methyltransferase Dcm K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D SO_1348 rnc; ribonuclease III Rnc K03685 rnc; ribonuclease III [EC:3.1.26.3]
D SO_1377 putative negative regulator of univalent cation permeability K07192 FLOT; flotillin
D SO_3146 DNA-binding protein H-NS family K03746 hns; DNA-binding protein H-NS
D SO_1863 histone-like DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha
D SO_1797 hupB; histone-like DNA-binding protein HupB K03530 hupB; DNA-binding protein HU-beta
D SO_0548 histone-like DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D SO_2087 ihfA; integration host factor alpha subunit IhfA K04764 ihfA; integration host factor subunit alpha
D SO_2401 ihfB; integration host factor beta subunit IhfB K05788 ihfB; integration host factor subunit beta
D SO_0008 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D SO_0298 gmhA; phosphoheptose isomerase GmhA K12961 diaA; DnaA initiator-associating protein
D SO_1158 dpsA; DNA-binding ferritin-like protein (oxidative damage protectant) DpsA K04047 dps; starvation-inducible DNA-binding protein
D SO_0393 fis; global transcriptional activator Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D SO_0603 hfq; RNA-binding pleiotrophic regulator Hfq K03666 hfq; host factor-I protein
D SO_2866 argP; arginine/lysine-responsive transcriptional regulator ArgP K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D SO_2305 lrp; leucine-responsive regulatory protein Lrp K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D SO_4337 transcriptional regulator AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D SO_4567 transcriptional regulator AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D SO_2177 ndpA; nucleoid-associated protein NdpA K06899 ndpA; nucleoid-associated protein
D SO_2898 smc; chromosome partition protein Smc K03529 smc; chromosome segregation protein
D SO_3015 scpA; segregation and condensation protein ScpA K05896 scpA; segregation and condensation protein A
D SO_3014 scpB; segregation and condensation protein ScpB K06024 scpB; segregation and condensation protein B
D SO_4216 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D SO_3439 ftsB; cell division protein FtsB K05589 ftsB; cell division protein FtsB
D SO_4585 ftsE; ABC-type cell division-associated export system ATPase component FtsE K09812 ftsE; cell division transport system ATP-binding protein
D SO_4225 ftsI; peptidoglycan synthetase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D SO_2306 ftsK; double-stranded DNA translocase FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D SO_4226 ftsL; cell division protein FtsL K03586 ftsL; cell division protein FtsL
D SO_4217 ftsQ; cell division protein FtsQ K03589 ftsQ; cell division protein FtsQ
D SO_4220 ftsW; cell division protein FtsW K03588 ftsW; cell division protein FtsW
D SO_4584 ftsX; ABC-type cell division-associated export system permease component FtsX K09811 ftsX; cell division transport system permease protein
D SO_4215 ftsZ; cell division filament FtsZ K03531 ftsZ; cell division protein FtsZ
D SO_2897 zipA; cell division protein ZipA K03528 zipA; cell division protein ZipA
D SO_0775 zapA; cell division protein interacting with FtsZ ZapA K09888 zapA; cell division protein ZapA
D SO_0335 zapB; septal ring assembly factor ZapB K09892 zapB; cell division protein ZapB
D SO_2591 protein of unknown function DUF1379 K18657 zapC; cell division protein ZapC
D SO_0412 yacF; protein of unknown function DUF1342 YacF K18778 zapD; cell division protein ZapD
D SO_3756 AFG1-family ATPase K06916 zapE; cell division protein ZapE
D SO_3941 AFG1-like ATPase K06916 zapE; cell division protein ZapE
D SO_0600 amiB; N-acetylmuramoyl-L-alanine amidase AmiB K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D SO_4693 vmeA; proton-coupled multidrug efflux pump MFP component VmeA K03585 acrA; membrane fusion protein, multidrug efflux system
D SO_1881 HAE1 family efflux pump MFP component K03585 acrA; membrane fusion protein, multidrug efflux system
D SO_4327 vexB; RND-type multidrug/detergent efflux system MFP component VexB K03585 acrA; membrane fusion protein, multidrug efflux system
D SO_3483 HAE1 family efflux pump MFP component K03585 acrA; membrane fusion protein, multidrug efflux system
D SO_2576 minC; septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D SO_2577 minD; membrane ATPase that activates MinC MinD K03609 minD; septum site-determining protein MinD
D SO_2578 minE; cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor
D SO_4604 sulA; UV induced cell division inhibitor SulA K13053 sulA; cell division inhibitor SulA
D SO_4251 slmA; transcriptional repressor of cell division SlmA K05501 slmA; TetR/AcrR family transcriptional regulator
D SO_2335 seqA; negative regulator of DNA replication SeqA K03645 seqA; negative modulator of initiation of replication
D SO_4098 mreB; cell wall structural complex component MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D SO_2082 rod shape-determining-related protein K03569 mreB; rod shape-determining protein MreB and related proteins
D SO_4097 mreC; cell wall structural complex component MreC K03570 mreC; rod shape-determining protein MreC
D SO_4096 mreD; cell wall structural complex component MreD K03571 mreD; rod shape-determining protein MreD
D SO_1167 mrdB; rod shape-determining protein MrdB K05837 rodA; rod shape determining protein RodA
D SO_4756 parA; chromosome partitioning protein ParA K03496 parA; chromosome partitioning protein
D SO_3331 protein with CobQ/CobB/MinD/ParA nucleotide binding domain K03496 parA; chromosome partitioning protein
D SO_3204 ParA family protein K03496 parA; chromosome partitioning protein
D SO_A0006 ParA family protein K03496 parA; chromosome partitioning protein
D SO_2808 protein with CobQ/CobB/MinD/ParA nucleotide binding domain K03496 parA; chromosome partitioning protein
D SO_A0061 repA; plasmid stability/partitioning determinant RepA K03496 parA; chromosome partitioning protein
D SO_A0095 parA; plasmid partition protein ParA K03496 parA; chromosome partitioning protein
D SO_4755 parB; chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D SO_A0031 ParB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D SO_A0096 parB; plasmid partition protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D SO_3897 parC; DNA topoisomerase IV A subunit ParC K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D SO_3899 parE; DNA topoisomerase IV B subunit ParE K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D SO_4758 mnmG; tRNA uridine 5-carboxymethylaminomethyl modification system MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D SO_4757 rsmG; 16S rRNA (guanine527-N7)-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D SO_4306 xerC; tyrosine recombinase XerC K03733 xerC; integrase/recombinase XerC
D SO_0950 xerD; integrase/recombinase XerD K04763 xerD; integrase/recombinase XerD
D SO_2618 apbC; scaffold protein for [4Fe-4S] cluster assembly ApbC K03593 mrp; ATP-binding protein involved in chromosome partitioning
D SO_0913 fic; cell filamentation protein Fic K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D SO_4266 mloA; Fic family protein MloA K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D SO_4667 yihA; 50S ribosome assembly GTPase YihA K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:son03400]
D SO_3126 ogt; constitutive O6-methylguanine-DNA methyltransferase II Ogt K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D SO_3384 phrB; deoxyribodipyrimidine photolyase PhrB K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D SO_3654 ung; uracil-DNA glycosylase Ung K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D SO_3368 mutY; adenine glycosylase MutY K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D SO_2514 nth; endonuclease III Nth K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D SO_0410 mutT; 7,8-dihydro-8-oxoguanine-triphosphatase MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D SO_4250 dut; deoxyuridine 5-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D SO_4169 deoxyribodipyrimidine photolyase-related protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
D SO_3127 multifunctional transcriptional regulator of DNA repair AraC family/DNA glycosylase / 8-oxoguanine DNA glycosylase K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D SO_0016 tag; DNA-3-methyladenine glycosylase I Tag K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D SO_4726 mutM; formamidopyrimidine-DNA glycosylase MutM K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D SO_3037 xth; exodeoxyribonuclease III Xth K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D SO_0952 recJ; 5'-3' ssDNA exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D SO_2896 ligA; DNA ligase NAD-dependent LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D SO_4669 polA; DNA polymerase I PolA K02335 polA; DNA polymerase I [EC:2.7.7.7]
D SO_4030 uvrA; excinuclease ABC A subunit UvrA K03701 uvrA; excinuclease ABC subunit A
D SO_2506 uvrB; excinuclease ABC B subunit UvrB K03702 uvrB; excinuclease ABC subunit B
D SO_1861 uvrC; excinuclease ABC C subunit UvrC K03703 uvrC; excinuclease ABC subunit C
D SO_0467 uvrD; DNA helicase II UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D SO_0224 rpoB; DNA-directed RNA polymerase beta subunit RpoB K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D SO_0225 rpoC; DNA-directed RNA polymerase beta' subunit RpoC K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D SO_0256 rpoA; DNA-directed RNA polymerase alpha subunit RpoA K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D SO_0360 rpoZ; DNA-directed RNA polymerase omega subunit RpoZ K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D SO_2255 mfd; transcription-repair coupling factor Mfd K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D SO_3431 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D SO_0601 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D SO_1330 mutH; DNA mismatch repair endonuclease MutH K03573 mutH; DNA mismatch repair protein MutH
D SO_2790 sbcB; exodeoxyribonuclease I SbcB K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D SO_3294 xseA; exodeoxyribonuclease VII large subunit XseA K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D SO_1527 xseB; exodeoxyribonuclease VII small subunit XseB K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D SO_1644 dnaE; DNA polymerase III alpha subunit DnaE K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D SO_0009 dnaN; DNA polymerase III beta subunit DnaN K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D SO_3423 holC; DNA polymerase III chi subunit HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D SO_1172 holA; DNA polymerase III delta subunit HolA K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D SO_2612 holB; DNA polymerase III delta' subunit HolB K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D SO_2245 exonuclease family protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D SO_2559 dnaQ; DNA polymerase III epsilon subunit DnaQ K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D SO_2855 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D SO_2013 dnaX; DNA polymerase III gamma and tau subunits DnaX K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D SO_4028 ssb; single-strand binding protein Ssb K03111 ssb; single-strand DNA-binding protein
D SO_0289 dam; N6-adenine DNA methyltransferase Dam K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D SO_0690 Mu phage DNA adenine methylase Dam family K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D SO_2148 recB; exodeoxyribonuclease V beta subunit RecB K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D SO_2149 recC; exodeoxyribonuclease V gamma subunit RecC K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D SO_2147 recD; exodeoxyribonuclease V alpha subunit RecD K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D SO_3430 recA; recombinase A RecA K03553 recA; recombination protein RecA
D SO_2430 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D SO_2429 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D SO_2431 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D SO_4122 priA; primosomal replication protein N' PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D SO_3929 priB; primosomal replication protein N PriB K02686 priB; primosomal replication protein N
D SO_1817 primosomal replication protein N'-like protein K04067 priC; primosomal replication protein N''
D SO_2843 sbcC; dsDNA exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50
D SO_2844 sbcD; dsDNA exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11
D SO_1226 radA; ATP-dependent protease RadA K04485 radA; DNA repair protein RadA/Sms
D SO_0010 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
D SO_4364 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D SO_1350 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D SO_2015 recR; recombination protein RecR K06187 recR; recombination protein RecR
D SO_3462 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D SO_1556 rdgC; putative exonuclease RdgC K03554 rdgC; recombination associated protein RdgC
D SO_2744 helicase K19789 radD; DNA repair protein RadD
D SO_0459 putative ATPase DUF853 family K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
D SO_2411 gyrA; DNA gyrase subunit GyrA K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D SO_0011 gyrB; DNA gyrase B subunit GyrB K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D SO_2705 topA; DNA topoisomerase I TopA K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D SO_1863 histone-like DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha
D SO_1797 hupB; histone-like DNA-binding protein HupB K03530 hupB; DNA-binding protein HU-beta
D SO_0548 histone-like DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D SO_0393 fis; global transcriptional activator Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D SO_2087 ihfA; integration host factor alpha subunit IhfA K04764 ihfA; integration host factor subunit alpha
D SO_2401 ihfB; integration host factor beta subunit IhfB K05788 ihfB; integration host factor subunit beta
D SO_4241 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D SO_2380 ATP-dependent DNA helicase RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D SO_3146 DNA-binding protein H-NS family K03746 hns; DNA-binding protein H-NS
D SO_1114 dinB; DNA polymerase IV DinB K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D SO_A0012 umuC; DNA polymerase V subunit UmuC K03502 umuC; DNA polymerase V
D SO_A0013 umuD; DNA polymerase V subunit UmuD K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D SO_4603 lexA; bifunctional transcriptional repressor of SOS-response/self-cleaving protease LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D SO_1820 polB; DNA polymerase II PolB K02336 polB; DNA polymerase II [EC:2.7.7.7]
D SO_3429 recX; regulatory protein RecX K03565 recX; regulatory protein
D SO_4325 rep; ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D SO_1819 dinG; ATP-dependent helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D SO_2081 ATP-dependent helicase DinG family K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D SO_2415 nrdA; aerobic ribonucleoside-diphosphate reductase alpha subunit NrdA K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D SO_2416 nrdB; aerobic ribonucleoside-diphosphate reductase beta subunit NrdB K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:son03029]
D SO_0609 petB; ubiquinol-cytochrome c reductase cytochrome b subunit PetB K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D SO_1204 infB; translation initiation factor IF-2 InfB K02519 infB; translation initiation factor IF-2
D SO_2300 infC; translation initiation factor IF-3 InfC K02520 infC; translation initiation factor IF-3
D SO_1630 tsf; translation elongation factor EF-Ts Tsf K02357 tsf; elongation factor Ts
D SO_0217 tufB; translation elongation factor Tu TufB K02358 tuf; elongation factor Tu
D SO_0229 tufA; translation elongation factor Tu TufA K02358 tuf; elongation factor Tu
D SO_0842 translation elongation factor G FusA-like protein K02355 fusA; elongation factor G
D SO_0228 fusA; translation elongation factor G FusA K02355 fusA; elongation factor G
D SO_1349 era; 30S ribosome assembly GTPase Era K03595 era; GTPase
D SO_1315 tyrS; tyrosyl-tRNA synthetase TyrS K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D SO_1174 leuS; leucyl-tRNA synthetase LeuS K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D SO_2433 aspS; aspartyl-tRNA synthetase AspS K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D SO_4123 argS; arginyl-tRNA synthetase ArgS K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D SO_4028 ssb; single-strand binding protein Ssb K03111 ssb; single-strand DNA-binding protein
D SO_1637 bamA; beta barrel protein translocation component BamA K07277 SAM50; outer membrane protein insertion porin family
D SO_1126 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D SO_1524 grpE; heat shock nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE
D SO_0704 groEL; 60 kDa chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D SO_0703 groES; 10 kDa chaperonin GroES K04078 groES; chaperonin GroES
D SO_1127 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D SO_2264 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D SO_2267 hscB; co-chaperone Hsc20 HscB K04082 hscB; molecular chaperone HscB
D SO_2880 grxD; monothiol glutaredoxin GrxD K07390 grxD; monothiol glutaredoxin
D SO_2618 apbC; scaffold protein for [4Fe-4S] cluster assembly ApbC K03593 mrp; ATP-binding protein involved in chromosome partitioning
D SO_4614 ctaB; protoheme IX farnesyltransferase (heme O synthase) CtaB K02257 COX10; heme o synthase [EC:2.5.1.141]
D SO_4608 ctaG; aa3 type cytochrome c oxidase assembly protein CtaG K02258 COX11; cytochrome c oxidase assembly protein subunit 11
D SO_4613 ctaA; heme A synthase CtaA K02259 COX15; heme a synthase [EC:1.17.99.9]
D SO_0004 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D SO_4615 senC; cytochrome c oxidase biogenesis protein SenC K07152 SCO1; protein SCO1
D SO_2016 htpG; heat shock chaperone HtpG K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:son02000]
D SO_2802 msbA; ABC-type lipid A export system bifunctional ATPase and permease components MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D SO_A0049 ABC-type bacteriocin export system multifunctional permease/ATPase/protease component K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB
D SO_0754 atmA; ABC-type Ni2+/Co2+ export system bifunctional ATPase and permease components AtmA K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter
D SO_3128 ABC-type metal export system bifunctional ATPase and permease component K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump
D SO_3665 ABC-type multidrug eflux system bifunctional ATPase and permease component K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D SO_4318 aggC; type I protein secretion system bifunctional ATPase and permease component AggC K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D SO_4147 type I secretion system ATPase and inner membrane subunit HlyB family K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D SO_4146 type I secretion system ATPase subunit HlyB family K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D SO_3779 cydC; ABC-type cysteine/glutathione export system bifunctional ATPase and permease component CydC K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D SO_3780 cydD; ABC-type cysteine/glutathione export system bifunctional ATPase and permease components CydD K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D SO_0821 macB; ABC-type macrolide export system bifunctional ATPase and permease component MacB K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D SO_1853 uup; Reg family ATPase involved in maintaining contact-dependent viability Uup K15738 uup; ABC transport system ATP-binding/permease protein
D SO_3599 cysP; ABC-type sulfate/thiosulfate uptake system substrate-binding component CysP K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein
D SO_4652 sbp; ABC-type sulfate/thiosulfate uptakesystem substrate-binding subunit Sbp K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D SO_4653 cysT; ABC-type sulfate/thiosulfate uptakesystem permease component 1 CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D SO_3600 cysT; ABC-type sulfate/thiosulfate uptake system permease component 1 CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D SO_4654 cysW; ABC-type sulfate/thiosulfate uptakesystem permease component 2 CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D SO_3601 cysW; ABC-type sulfate/thiosulfate uptake system permease component 2 CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D SO_4655 cysA; ABC-type sulfate/thiosulfate uptakesystem ATPase component CysA K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D SO_3602 cysA; ABC-type sulfate/thiosulfate uptake system ATPase component CysA K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D SO_4448 modA; ABC-type molybdate uptake system substrate-binding component ModA K02020 modA; molybdate transport system substrate-binding protein
D SO_3863 modA; ABC-type molybdate uptake system substrate-binding component ModA K02020 modA; molybdate transport system substrate-binding protein
D SO_3967 orphan ABC-type transport system substrate-binding component K02020 modA; molybdate transport system substrate-binding protein
D SO_4447 modB; ABC-type molybdate uptake system permease component ModB K02018 modB; molybdate transport system permease protein
D SO_3864 modB; ABC-type molybdate uptake system permease component ModB K02018 modB; molybdate transport system permease protein
D SO_3865 modC; ABC-type molybdate uptake system ATPase component ModC K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D SO_4446 modC; ABC-type molybdate uptake system ATPase component ModC K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D SO_0726 phrA; photoreactivation-associated protein PhrA K05776 modF; molybdate transport system ATP-binding protein
D SO_4719 tupA; ABC-type tungstate uptake system substrate-binding component TupA K05772 tupA; tungstate transport system substrate-binding protein
D SO_4720 tupB; ABC-type tungstate uptake system permease component TupB K05773 tupB; tungstate transport system permease protein
D SO_4721 tupC; ABC-type tungstate uptake system ATPase componet TupC K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6]
D SO_0744 fbpA; ABC-type Fe3+ uptake system substrate-binding component FbpA K02012 afuA; iron(III) transport system substrate-binding protein
D SO_0743 fbpB; ABC-type Fe3+ uptake system permease component FbpB K02011 afuB; iron(III) transport system permease protein
D SO_0742 fbpC; ABC-type Fe3+ uptake system ATPase component FbpC K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D SO_1270 potF; ABC-type putrescine uptake system substrate-binding component PotF K11073 potF; putrescine transport system substrate-binding protein
D SO_1273 potI; ABC-type putrescine uptake system permease component 2 PotI K11074 potI; putrescine transport system permease protein
D SO_1272 potH; ABC-type putrescine uptake system permease component 1 PotH K11075 potH; putrescine transport system permease protein
D SO_1271 potG; ABC-type putrescine uptake system ATPase component PotG K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16]
D SO_1959 solute-binding protein K02002 proX; glycine betaine/proline transport system substrate-binding protein
D SO_3714 ABC-type monosaccharide transport system substrate binding component K10439 rbsB; ribose transport system substrate-binding protein
D SO_3952 mlaD; ABC-type phospholipid uptake (salvage) system substrate-binding component MlaD K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D SO_3953 mlaE; ABC-type phospholipid uptake (salvage) system permease component MlaE K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D SO_3954 mlaF; ABC-type phospholipid uptake (salvage) system ATPase component MlaF K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D SO_3951 mlaC; ABC-type phospholipid uptake (salvage) system periplasmic chaperone MlaC K07323 mlaC; phospholipid transport system substrate-binding protein
D SO_3950 mlaB; ABC-type phospholipid uptake (salvage) system anti-anti-sigma factor MlaB K07122 mlaB; phospholipid transport system transporter-binding protein
D SO_3333 periplasmic substrate binding protein family 1 K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D SO_1560 pstS; ABC-type phosphate uptake system substrate-binding component PstS K02040 pstS; phosphate transport system substrate-binding protein
D SO_4292 pstS; ABC-type phosphate uptake system substrate-binding component PstS K02040 pstS; phosphate transport system substrate-binding protein
D SO_1723 pstC; ABC-type high affinity phosphate uptake system permease component PstC K02037 pstC; phosphate transport system permease protein
D SO_4291 pstC; ABC-type phosphate uptake system permease component PstC K02037 pstC; phosphate transport system permease protein
D SO_1724 pstA; ABC-type high affinity phosphate uptake system permease component PstA K02038 pstA; phosphate transport system permease protein
D SO_4290 pstA; ABC-type phosphate uptake system permease component PstA K02038 pstA; phosphate transport system permease protein
D SO_1725 pstB; ABC-type high affinity phosphate uptake system ATPase component PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D SO_4289 pstB; ABC-type phosphate uptake system permease ATPase component PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D SO_1044 artI; ABC-type arginine uptakesystem substrate-binding component ArtI K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein
D SO_1043 artQ; ABC-type arginine uptakesystem permease component ArtQ K17077 artQ; arginine/lysine/histidine transport system permease protein
D SO_1042 artM; ABC-type arginine uptakesystem ATPase component ArtM K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1]
D SO_1503 periplasmic substrate binding protein family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D SO_3481 periplasmic substrate binding protein family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D SO_1260 extracellular solute-binding protein family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D SO_4528 predicted periplasmic protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D SO_1143 periplasmic substrate binding protein family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D SO_0056 ABC-type transport system substrate binding component K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D SO_3412 periplasmic solute binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D SO_3860 periplasmic substrate binding protein family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D SO_1805 sapA; ABC-type peptide uptake system substrate-binding component SapA K19226 sapA; cationic peptide transport system substrate-binding protein
D SO_1804 sapB; ABC-type peptide uptake system permease component 1 SapB K19227 sapB; cationic peptide transport system permease protein
D SO_1803 sapC; ABC-type peptide uptake system permease component 2 SapC K19228 sapC; cationic peptide transport system permease protein
D SO_1802 sapD; ABC-type peptide uptake system ATPase component 1 SapD K19229 sapD; cationic peptide transport system ATP-binding protein
D SO_1801 sapF; ABC-type peptide uptake system ATPase component 2 SapF K19230 sapF; cationic peptide transport system ATP-binding protein
D SO_3673 hmuB; ABC-type hemin uptake system substrate-binding component HmuB K25132 hmuT; heme transport system substrate-binding protein
D SO_3674 hmuC; ABC-type hemin uptake system permease component HmuC K25133 hmuU; heme transport system permease protein
D SO_3675 hmuD; ABC-type hemin uptake system ATPase component HmuD K10834 hmuV; heme transport system ATP-binding protein [EC:7.6.2.5]
D SO_1034 btuC; ABC-type cobalamin uptake system permease component BtuC K02015 ABC.FEV.P; iron complex transport system permease protein
D SO_1033 btuD; ABC-type cobalamin uptake system ATPase component BtuD K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D SO_3709 btuF; ABC-type cobalamin uptake system substrate-binding component BtuF K06858 btuF; vitamin B12 transport system substrate-binding protein
D SO_4712 ABC-type transporter ATPase component K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D SO_0565 znuA; ABC-type zinc uptake system substrate-binding component ZnuA K02077 ABC.ZM.S; zinc/manganese transport system substrate-binding protein
D SO_0566 znuB; ABC-type zinc uptake system permease component ZnuB K02075 ABC.ZM.P; zinc/manganese transport system permease protein
D SO_1369 lptF; ABC-type lipopolysaccharide export system permease component 1 LptF K07091 lptF; lipopolysaccharide export system permease protein
D SO_1370 lptG; ABC-type lipopolysaccharide export system permease component 2 LptG K11720 lptG; lipopolysaccharide export system permease protein
D SO_3960 lptB; ABC-type lipopolysaccharide export system ATPase component LptB K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D SO_0069 natB; ABC-type sodium efflux system permease component NatB K09696 natB; sodium transport system permease protein
D SO_0070 natA; ABC-type sodium efflux system ATPase component NatA K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4]
D SO_0488 nosY; ABC-type copper transport system permease component NosY K19341 nosY; Cu-processing system permease protein
D SO_0487 nosF; ABC-type copper transport system ATPase component NosF K19340 nosF; Cu-processing system ATP-binding protein
D SO_2257 lolE; ABC-type lipoprotein release system permease component LolE K09808 lolC_E; lipoprotein-releasing system permease protein
D SO_2259 lolC; ABC-type lipoprotein release system permease component LolC K09808 lolC_E; lipoprotein-releasing system permease protein
D SO_2258 lolD; ABC-type lipoprotein release system ATPase component LolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D SO_0260 ccmD; ABC-type heme export system CcmE-interacting component CcmD K02196 ccmD; heme exporter protein D
D SO_0261 ccmC; ABC-type heme export system permease component 2 CcmC K02195 ccmC; heme exporter protein C
D SO_0262 ccmB; ABC-type heme export system permease component 1 CcmB K02194 ccmB; heme exporter protein B
D SO_0263 ccmA; ABC-type heme export system ATPase component CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D SO_4584 ftsX; ABC-type cell division-associated export system permease component FtsX K09811 ftsX; cell division transport system permease protein
D SO_4585 ftsE; ABC-type cell division-associated export system ATPase component FtsE K09812 ftsE; cell division transport system ATP-binding protein
D SO_3801 ABC-type DrugE1 family export systempermease component K01992 ABC-2.P; ABC-2 type transport system permease protein
D SO_4088 ABC-type efflux system permease component 1 K01992 ABC-2.P; ABC-2 type transport system permease protein
D SO_4087 ABC-type efflux system permease component 2 K01992 ABC-2.P; ABC-2 type transport system permease protein
D SO_1707 ABC-type drugE1 family efflux system permease component K01992 ABC-2.P; ABC-2 type transport system permease protein
D SO_1866 ABC-type export system permease component K01992 ABC-2.P; ABC-2 type transport system permease protein
D SO_0073 ABC-type efflux system ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D SO_1865 ABC-type export system ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D SO_3802 ABC-type DrugE1 family export system ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D SO_1706 ABC-type drugE1 family efflux system ATPase component K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D SO_2926 ybbP; putative ABC-type fatty acid export system permease component YbbP K02004 ABC.CD.P; putative ABC transport system permease protein
D SO_0856 attFG; ABC-type export system permease component AttFG K02004 ABC.CD.P; putative ABC transport system permease protein
D SO_3690 ABC-type macrolide family export system permease component 1 K02004 ABC.CD.P; putative ABC transport system permease protein
D SO_3691 ABC-type macrolide family export system permease component 2 K02004 ABC.CD.P; putative ABC transport system permease protein
D SO_2927 ybbA; putative ABC-type fatty acid export system ATPase component YbbA K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D SO_3692 ABC-type macrolide family export system ATPase component K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D SO_0857 attE; ABC-type export system ATPase component AttE K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D SO_2295 norM; drug:Na+ antiporter NorM K26939 norM; MATE family, multidrug efflux pump
D SO_4617 dinF; DNA damage-inducible multidrug and toxin efflux protein DinF K26937 dinF; MATE family, multidrug efflux pump
D SO_0802 multidrug and toxin efflux protein MATE family K26937 dinF; MATE family, multidrug efflux pump
D SO_0702 multidrug and toxin efflux protein MATE family K26937 dinF; MATE family, multidrug efflux pump
D SO_1918 multidrug and toxin efflux protein MATE family K26937 dinF; MATE family, multidrug efflux pump
D SO_1506 Na(+)-coupled multidrug efflux pump VmrA-like protein K26937 dinF; MATE family, multidrug efflux pump
D SO_3503 nagP; N-acetyl glucosamine transporter NagP K02429 fucP; MFS transporter, FHS family, L-fucose permease
D SO_3078 transporter major facilitator superfamily K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter
D SO_0539 transport protein MFS superfamily K25223 arsJ; MFS transporter, APGE family, 1-arseno-3-phosphoglycerate exporter
D SO_3814 ampG; GlcNAc-anhMurNAc permease AmpG K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D SO_4555 drug:H+ antiporter DHA1 family K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D SO_2280 drug:H+ antiporter DHA1 family K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D SO_2389 emrD; multidrug efflux protein EmrD K08154 emrD; MFS transporter, DHA1 family, 2-module integral membrane pump EmrD
D SO_4021 mdtL; chloramphenicol resistance protein MdtL K08163 mdtL; MFS transporter, DHA1 family, multidrug resistance protein
D SO_0525 rmrB; multidrug efflux pump permease component RmrB K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D SO_1917 major facilitator superfamily transporter required for growth on DMSO MFS superfamily K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein
D SO_0450 transporter MFS superfamily K08219 UMF2; MFS transporter, UMF2 family, putative MFS family transporter protein
D SO_2718 deoT; nucleoside sugar transporter DeoT K06141 tsgA; MFS transporter, TsgA protein
D SO_2237 ptsI; phosphotransferase system (PTS) phosphoenolpyruvate-protein phosphotransferase PtsI K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D SO_1332 ptsP; phosphotransferase system (PTS) enzyme I PtsP K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
D SO_2238 ptsH; phosphotransferase system (PTS) phosphocarrier protein HPr PtsH K02784 ptsH; phosphocarrier protein HPr
D SO_3965 ptsO; phosphotransferase system (PTS) phosphohisitinoprotein-hexose phosphotransferase comonent PtsO K08485 ptsO; phosphocarrier protein NPr
D SO_2236 crr; phosphotransferase system (PTS) glucose-specific IIA component Crr K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D SO_1623 ptsG; phosphotransferase system (PTS) glucose-specific IIBC component PtsG K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199]
D SO_3963 ptsN; phosphotransferase system (PTS) sugar-specific IIA component PtsN K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
D SO_1307 aqpZ; aquaporin Z AqpZ K06188 aqpZ; aquaporin Z
D SO_3768 kvaP; voltage-gated potassium uptake system KvaP K10716 kch; voltage-gated potassium channel
D SO_0760 ammonium transporter channel family protein K03320 amt; ammonium transporter, Amt family
D SO_4697 gst; glutathione S-transferase Gst K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D SO_0746 glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D SO_0012 glutathione S-transferase family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D SO_0611 sspA; transcpriptional activator SspA K03599 sspA; stringent starvation protein A
D SO_4385 von Willebrand factor type A domain protein K07114 yfbK; Ca-activated chloride channel homolog
D SO_3552 lipoprotein with VWA and DUF3520 domains K07114 yfbK; Ca-activated chloride channel homolog
D SO_3093 batA; VWR domain protein in aerotolerance operon BatA K07114 yfbK; Ca-activated chloride channel homolog
D SO_3094 batB; TPR domain protein in aerotolerance operon BatB K07114 yfbK; Ca-activated chloride channel homolog
D SO_2195 inter-alpha-trypsin inhibitor family protein K07114 yfbK; Ca-activated chloride channel homolog
D SO_2375 yccA; integral membrane FtsH interacting protein YccA K19416 yccA; modulator of FtsH protease
D SO_2911 focA; bidirectional formate transporter FocA K06212 focA; formate transporter
D SO_0522 mscL; large conductance mechanosensitive ion channel protein MscL K03282 mscL; large conductance mechanosensitive channel
D SO_0588 small conductance mechanosensitive ion channel protein MscS family K22051 mscM; miniconductance mechanosensitive channel
D SO_3340 mscS; small conductance mechanosensitive ion channel protein MscS K03442 mscS; small conductance mechanosensitive channel
D SO_0121 ybdG; small conductance mechanosensitive ion channel protein YbdG K16053 ybdG; miniconductance mechanosensitive channel
D SO_3966 magnesium transporter MgtE family K06213 mgtE; magnesium transporter
D SO_1145 magnesium transporter MgtE family K06213 mgtE; magnesium transporter
D SO_1565 magnesium transporter MgtE family K06213 mgtE; magnesium transporter
D SO_1529 pomA; stator-force generator of Na+ coupled flagellar motor PomA K02556 motA; chemotaxis protein MotA
D SO_4287 motA; stator-force generator of H+ coupled flagellar motor MotA K02556 motA; chemotaxis protein MotA
D SO_1530 pomB; stator-force generator of Na+ coupled flagellar motor PomB K02557 motB; chemotaxis protein MotB
D SO_4286 motB; stator-force generator of H+ coupled flagellar motor MotB K02557 motB; chemotaxis protein MotB
D SO_3936 motX; flagellar rotation associated protein MotX K21217 motX; sodium-type polar flagellar protein MotX
D SO_2754 motY; smf-dependent flagellar motor protein MotY K21218 motY; sodium-type flagellar protein MotY
D SO_3671 exbB; TonB1 energy transduction system for heme uptake inner membrane component ExbB K03561 exbB; biopolymer transport protein ExbB
D SO_1826 exbB; TonB2 energy transduction system inner membrane component ExbB K03561 exbB; biopolymer transport protein ExbB
D SO_1825 ttpC; TonB2 energy transduction system inner membrane component TtpC K03561 exbB; biopolymer transport protein ExbB
D SO_1827 exbD; TonB2 energy transduction system membrane anchored component ExbD K03559 exbD; biopolymer transport protein ExbD
D SO_2751 tolQ; TolA energy-transducing system inner membrane component TolQ K03562 tolQ; biopolymer transport protein TolQ
D SO_2750 tolR; TolA energy-transducing system inner membrane component TolR K03560 tolR; biopolymer transport protein TolR
D SO_1941 corA; divalent cation (Mg2+, Co2+, Ni2+) transporter CorA K03284 corA; magnesium transporter
D SO_3984 metal ion transporter MIT family K16074 zntB; zinc transporter
D SO_2309 crcB; camphor resistance protein CrcB K06199 crcB; fluoride exporter
D SO_1406 Hg(II) uptake system permease component MerT family K08363 merT; mercuric ion transport protein
D SO_1407 Hg(II) uptake system substrate-binding component MerP family K08364 merP; periplasmic mercuric ion binding protein
D SO_2815 transporter-like protein HCC family K03699 tlyC; magnesium and cobalt exporter, CNNM family
D SO_3316 protein of unknown function DUF21 with CBS domain K03699 tlyC; magnesium and cobalt exporter, CNNM family
D SO_1354 putative transporter HlyC/CorC (HCC) family K03699 tlyC; magnesium and cobalt exporter, CNNM family
D SO_4351 hlyA; hemolysin HlyA K03699 tlyC; magnesium and cobalt exporter, CNNM family
D SO_1821 outer membrane porin K09476 ompF; outer membrane pore protein F
D SO_4473 autotransporter K16079 omp31; outer membrane immunogenic protein
D SO_A0114 outer membrane protein OmpA family K03286 TC.OOP; OmpA-OmpF porin, OOP family
D SO_3545 outer membrane porin K03286 TC.OOP; OmpA-OmpF porin, OOP family
D SO_4232 outer membrane long-chain fatty acid receptor FadL family K06076 fadL; long-chain fatty acid transport protein
D SO_3099 outer membrane long-chain fatty acid receptor FadL family K06076 fadL; long-chain fatty acid transport protein
D SO_1215 ompK; nucleoside-specific outer membrane porin OmpK K05517 tsx; nucleoside-specific channel-forming protein
D SO_3914 TonB-dependent siderophore receptor K16090 fiu; catecholate siderophore receptor
D SO_1102 TonB-dependent receptor K16091 fecA; Fe(3+) dicitrate transport protein
D SO_3033 putA; TonB-dependent ferric putrebactin siderophore receptor PutA K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid
D SO_4523 irgA; iron-responsive TonB-dependent enterobactin receptor IrgA K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins
D SO_3669 hmuA; TonB-dependent heme/hemoglobin receptor HmuA K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D SO_1580 TonB-dependent haem/haemoglobin receptor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D SO_0719 TonB-dependent hemoprotein receptor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D SO_1156 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D SO_0630 nosA; TonB-dependent copper receptor NosA K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D SO_4743 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D SO_2469 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D SO_0815 btuB; TonB-dependent vitamin B12 receptor BtuB K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D SO_4077 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D SO_2427 ArgR-regulated TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D SO_3514 TonB-dependent chitooligosaccharide receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D SO_2907 ArgR-regulated TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D SO_4422 TonB-dependent ferric achromobactin receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D SO_3904 tolC; global secretion system secretin TolC K12340 tolC; outer membrane protein
D SO_4320 aggA; type I protein secretion system secretin component AggA K12543 lapE; outer membrane protein, adhesin transport system
D SO_3193 wza; outer membrane polysaccharide export channel protein Wza K01991 wza; polysaccharide biosynthesis/export protein
D SO_1637 bamA; beta barrel protein translocation component BamA K07277 SAM50; outer membrane protein insertion porin family
D SO_3309 bamB; beta barrel protein translocation lipoprotein component BamB K17713 bamB; outer membrane protein assembly factor BamB
D SO_1880 bamD; beta barrel protein translocation component BamD K07287 bamC; outer membrane protein assembly factor BamC
D SO_3580 bamC; beta barrel protein translocation lipoprotein component BamC K05807 bamD; outer membrane protein assembly factor BamD
D SO_1476 bamE; beta barrel protein translocation component BamE K06186 bamE; outer membrane protein assembly factor BamE
D SO_2114 outer membrane protein Omp85 family K07278 tamA; translocation and assembly module TamA
D SO_2113 outer membrane protein with carboxy terminal DUF490 domain K09800 tamB; translocation and assembly module TamB
D SO_3959 lptA; ABC-type lipopolysaccharide export system chaperone component LptA K09774 lptA; lipopolysaccharide export system protein LptA
D SO_3958 lptC; ABC-type lipopolysaccharide export system MFP component LptC K11719 lptC; lipopolysaccharide export system protein LptC
D SO_3636 lptD; lipopolysaccharide export porin LptD K04744 lptD; LPS-assembly protein
D SO_1173 lptE; OM lipoprotein component of lipopolysaccharide assembly complex chaperone LptE K03643 lptE; LPS-assembly lipoprotein
D SO_1178 corC; magnesium and cobalt efflux protein CorC K06189 corC; hemolysin (HlyC) family protein
D SO_1047 lrgA; inner membrane protein LrgA K06518 cidA; holin-like protein
D SO_2458 malT; putative maltose transporter MalT K16211 malY; maltose/moltooligosaccharide transporter
D SO_0313 potE; putrescine:ornithine antiporter PotE K03756 potE; putrescine:ornithine antiporter
D SO_4565 yjeH; L-leucine transporter YjeH K16263 yjeH; amino acid efflux transporter
D SO_4475 fieF; cadmium and zinc efflux pump FieF K13283 fieF; ferrous-iron efflux pump FieF
D SO_0520 heavy metal efflux pump permease component CzcA family K15726 czcA; heavy metal efflux system protein
D SO_A0153 cusA; copper/silver efflux pump permease component CusA K07787 cusA; copper/silver efflux system protein
D SO_4598 cusA; copper/silver efflux pump permease component CusA K07787 cusA; copper/silver efflux system protein
D SO_3492 mexF; HAE1 family efflux pump permease component MexF K18299 mexF; multidrug efflux pump
D SO_4692 vmeB; proton-coupled multidrug efflux pump permease component VmeB K18138 acrB; multidrug efflux pump
D SO_1882 HAE1 family efflux pump permease component K18138 acrB; multidrug efflux pump
D SO_4328 vexA; RND-type multidrug/detergent efflux system permease component VexA K18138 acrB; multidrug efflux pump
D SO_A0159 multidrug efflux transporter DMT superfamily K03297 emrE; small multidrug resistance pump
D SO_1901 sugE; quaternary ammonium compound efflux pump SugE K11741 sugE; quaternary ammonium compound-resistance protein SugE
D SO_4527 10 TMS drug/metabolite efflux pump (DME) family K15269 pecM; probable blue pigment (indigoidine) exporter
D SO_4243 rarD; 10 TMS drug/metabolite exporter (DME) family protein RarD K05786 rarD; chloramphenicol-sensitive protein RarD
D SO_0370 inner membrane protein of unknown function DUF606 K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D SO_0371 membrane protein of unknown function DUF606 K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D SO_2757 yuiF; putative histidine porter YuiF K07084 yuiF; putative amino acid transporter
D SO_1771 grtP; D-glycerate transporter GrtP K03299 TC.GNTP; gluconate:H+ symporter, GntP family
D SO_4417 dcuB; anaerobic C4-dicarboxylate transporter DcuB K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D SO_0827 lactate transport protein LctP family K03303 lutP; lactate permease
D SO_1522 lactate transport protein LctP family K03303 lutP; lactate permease
D SO_1001 chaA; calcium:proton antiporter ChaA K07300 chaA; Ca2+:H+ antiporter
D SO_0354 yrbG; sodium:calcium antiporter CaCA family YrbG K07301 yrbG; cation:H+ antiporter
D SO_1052 pitB; metal ion-phosphate:proton symporter PitB K16322 pit; low-affinity inorganic phosphate transporter
D SO_2857 putative solute:sodium symporter large subunit K14393 actP; cation/acetate symporter
D SO_3122 sstT; serine/threonine:Na+ symporter SstT K07862 sstT; serine/threonine transporter
D SO_2923 gltS; sodium:glutamate symporter GltS K03312 gltS; glutamate:Na+ symporter, ESS family
D SO_1336 nhaA; Na+/H+ antiporter NhaA K03313 nhaA; Na+:H+ antiporter, NhaA family
D SO_2886 nhaB; sodium:proton antiporter NhaB K03314 nhaB; Na+:H+ antiporter, NhaB family
D SO_0336 sodium:proton antiporter NhaC family K18218 tet35; tetracycline resistance efflux pump
D SO_2481 sodium:proton antiporter NhaC family K18218 tet35; tetracycline resistance efflux pump
D SO_1007 lysW; lysine transporter LysW K18218 tet35; tetracycline resistance efflux pump
D SO_3747 khaP; K+:H+ antiporter KhaP K11105 cvrA; potassium/hydrogen antiporter
D SO_1366 sodium:proton antiporter CPA1 family K03316 nhaP; Na+:H+ antiporter
D SO_1481 kefC; glutathione-gated K(+)-efflux system KefC K11747 kefB; glutathione-regulated potassium-efflux system protein KefB
D SO_1647 kefB; glutathione-gated K(+)-efflux system KefB K03455 KEA1_2_3; K+:H+ antiporter
D SO_0024 trkH; potassium uptake transporter TrkH K03498 trkH; trk/ktr system potassium uptake protein
D SO_0028 trkI; potassium uptake transporter TrkI K03498 trkH; trk/ktr system potassium uptake protein
D SO_0057 ktrB; sodium-dependent potassium uptake protein integral membrane component KtrB K03498 trkH; trk/ktr system potassium uptake protein
D SO_4282 ktrB; sodium-dependent potassium uptake system permease component KtrB K03498 trkH; trk/ktr system potassium uptake protein
D SO_0029 trkA; potassium uptake protein TrkA K03499 trkA; trk/ktr system potassium uptake protein
D SO_4281 ktrA; sodium-dependent potassium uptake system NAD binding component KtrA K03499 trkA; trk/ktr system potassium uptake protein
D SO_0058 ktrA; sodium-dependent potassium uptake system NAD binding component KtrA K03499 trkA; trk/ktr system potassium uptake protein
D SO_2879 uraA; N-acetylglucosamine/uracil transporter UraA K02824 uraA; uracil permease
D SO_1120 hypoxanthine/guanine permease AzgA family K06901 pbuG; adenine/guanine/hypoxanthine permease
D SO_1236 purine transporter AzgA family K06901 pbuG; adenine/guanine/hypoxanthine permease
D SO_2065 tyrP; tyrosine transporter TyrP K03834 tyrP; tyrosine-specific transport protein
D SO_1074 tyrosine transporter TyrP-like protein K03834 tyrP; tyrosine-specific transport protein
D SO_4601 mtr; high affinity tryptophan transporter Mtr K03835 mtr; tryptophan-specific transport protein
D SO_0919 sdaC; serine uptake transporter SdaC K03837 sdaC; serine transporter
D SO_1302 chloride channel protein ClC family K03281 clcA; chloride channel protein, CIC family
D SO_0986 chromate efflux pump K07240 chrA; chromate transporter
D SO_3553 sulfate transporter SulP family K03321 TC.SULP; sulfate permease, SulP family
D SO_3134 dctP; TRAP-type C4-dicarboxylate:H+ symport system substrate-binding component DctP K11688 dctP; C4-dicarboxylate-binding protein DctP
D SO_3135 dctQ; TRAP-type C4-dicarboxylate:H+ symport system small permease component DctQ K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit
D SO_3136 dctM; TRAP-type C4-dicarboxylate:H+ symport system large permease component DctM K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D SO_0534 arsenate permease ACR3 family K03325 ACR3; arsenite transporter
D SO_3534 murJ; peptidoglycan lipid II flippase MurJ K03980 murJ; putative peptidoglycan lipid II flippase
D SO_2620 transport protein AEC family K13936 mdcF; malonate transporter and related proteins
D SO_3461 transporter AEC family K13936 mdcF; malonate transporter and related proteins
D SO_2865 argO; L-arginine efflux tranporter ArgO K06895 lysE; L-lysine exporter family protein LysE/ArgO
D SO_1954 homogentisate export protein K05834 rhtB; homoserine/homoserine lactone efflux protein
D SO_0122 putative amino acid efflux permease RhtB family K05834 rhtB; homoserine/homoserine lactone efflux protein
D SO_0765 putative amino acid efflux permease RhtB family K05835 rhtC; threonine efflux protein
D SO_3657 putative amino acid efflux permease RhtB family K05835 rhtC; threonine efflux protein
D SO_0530 amino acid efflux protein RhtB family K05835 rhtC; threonine efflux protein
D SO_1760 branched-chain amino acid efflux pump permease component 1 AzlC family K26605 azlC; branched chain amino acid efflux pump
D SO_1759 branched-chain amino acid efflux pump permease component 2 AzlD family K26606 azlD; branched chain amino acid efflux pump
D SO_2867 yfgO; predicted inner membrane permease UPF0118 family YfgO K03548 perM; putative permease
D SO_4715 membrane protein of unknown function DUF165 K09125 yhhQ; queuosine precursor transporter
D SO_2137 ychE; 6TMS neutral amino acid transporter (NAAT) family protein YchE K05595 marC; multiple antibiotic resistance protein
D SO_4220 ftsW; cell division protein FtsW K03588 ftsW; cell division protein FtsW
D SO_3670 tonB; TonB1 energy transduction system for heme uptake energy transducer component TonB K03832 tonB; periplasmic protein TonB
D SO_1828 tonB2; TonB2 mediated energy transduction system energy transducer component TonB2 K03832 tonB; periplasmic protein TonB
D SO_4564 tonB; TonB mediated energy transduction system energy transducer component TonB K03832 tonB; periplasmic protein TonB
D SO_2747 pal; peptidoglycan-associated lipoprotein Pal K03640 pal; peptidoglycan-associated lipoprotein
D SO_2749 tolA; TolA energy-transducing system inner membrane component TolA K03646 tolA; colicin import membrane protein
D SO_2748 tolB; TonB biopolymer transport system periplasmic component TolB K03641 tolB; TolB protein
D SO_0101 fdnG; nitrate-inducible formate dehydrogenase molybdopterin-binding subunit FdnG K08348 fdnG; formate dehydrogenase-N, alpha subunit [EC:1.17.5.3]
D SO_1429 dmsA; extracellular dimethyl sulfoxide/manganese oxide reductase molybdopterin-binding subunit DmsA K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3]
D SO_4358 extracellular oxidoreductase molybdopterin-binding lipoprotein subunit K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3]
D SO_1430 dmsB; extracellular dimethyl sulfoxide/manganese oxide reductase ferredoxin subunit DmsB K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B
D SO_4357 extracellular oxidoreductase FeS binding subunit K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B
D SO_1232 torA; trimethylamine-N-oxide reductase TorA K07811 torA; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D SO_1233 torC; trimethylamine N-oxide reductase membrane anchored cytochrome c component TorC K03532 torC; trimethylamine-N-oxide reductase (cytochrome c), cytochrome c-type subunit TorC
D SO_1231 torD; TorA-specific chaperone TorD K03533 torD; TorA specific chaperone
D SO_4062 phsA; sulfur reductase molybdoperterin-binding subunit PhsA K08352 phsA; thiosulfate reductase / polysulfide reductase chain A [EC:1.8.5.5]
D SO_4061 phsB; sulfur reductase FeS subunit PhsB K16293 psrB; polysulfide reductase chain B
D SO_4060 phsC; sulfur reductase membrane anchoring component PhsC K16294 psrC; polysulfide reductase chain C
D SO_4597 cusB; copper/silver efflux pump MFP component CusB K07798 cusB; membrane fusion protein, copper/silver efflux system
D SO_A0154 cusB; copper/silver efflux pump MFP component CusB K07798 cusB; membrane fusion protein, copper/silver efflux system
D SO_4319 aggB; type I protein secretion system MFP component AggB K12542 lapC; membrane fusion protein, adhesin transport system
D SO_4148 type I protein secretion system MFP component HlyD family K12542 lapC; membrane fusion protein, adhesin transport system
D SO_A0050 ABC-type bacteriocin export system MFP component K13408 cvaA; membrane fusion protein
D SO_3493 mexE; HAE1 family efflux pump MFP component MexE K18298 mexE; membrane fusion protein, multidrug efflux system
D SO_4693 vmeA; proton-coupled multidrug efflux pump MFP component VmeA K03585 acrA; membrane fusion protein, multidrug efflux system
D SO_1881 HAE1 family efflux pump MFP component K03585 acrA; membrane fusion protein, multidrug efflux system
D SO_4327 vexB; RND-type multidrug/detergent efflux system MFP component VexB K03585 acrA; membrane fusion protein, multidrug efflux system
D SO_3483 HAE1 family efflux pump MFP component K03585 acrA; membrane fusion protein, multidrug efflux system
D SO_0820 macA; ABC-type macrolide export systemMFP component MacA K13888 macA; membrane fusion protein, macrolide-specific efflux system
D SO_2713 pnuT; thiamin uptake permease PnuT K03811 pnuC; nicotinamide mononucleotide transporter
D SO_1783 feoA; ferrous iron transport protein A FeoA K04758 feoA; ferrous iron transport protein A
D SO_1784 feoB; ferrous iron transport protein B FeoB K04759 feoB; ferrous iron transport protein B
D SO_0266 ccmF; cytochrome c synthetase cytochrome b containing quinol-haem oxidoreductase subunit CcmF K02198 ccmF; cytochrome c-type biogenesis protein CcmF
D SO_0478 sirE; cytochrome c maturation system haem lyase subunit SirE K02198 ccmF; cytochrome c-type biogenesis protein CcmF
D SO_3592 mipA; outer membrane MltA-interaction protein MipA K07274 mipA; MipA family protein
C 02044 Secretion system [BR:son02044]
D SO_3904 tolC; global secretion system secretin TolC K12340 tolC; outer membrane protein
D SO_4318 aggC; type I protein secretion system bifunctional ATPase and permease component AggC K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D SO_4147 type I secretion system ATPase and inner membrane subunit HlyB family K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D SO_4146 type I secretion system ATPase subunit HlyB family K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D SO_4319 aggB; type I protein secretion system MFP component AggB K12542 lapC; membrane fusion protein, adhesin transport system
D SO_4148 type I protein secretion system MFP component HlyD family K12542 lapC; membrane fusion protein, adhesin transport system
D SO_4320 aggA; type I protein secretion system secretin component AggA K12543 lapE; outer membrane protein, adhesin transport system
D SO_A0050 ABC-type bacteriocin export system MFP component K13408 cvaA; membrane fusion protein
D SO_A0049 ABC-type bacteriocin export system multifunctional permease/ATPase/protease component K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB
D SO_1297 gspA; T2aSS secretion system protein A GspA K02450 gspA; general secretion pathway protein A
D SO_1298 gspB; T2aSS secretion system protein B GspB K02451 gspB; general secretion pathway protein B
D SO_0165 gspC; T2aSS secretion system protein GspC K02452 gspC; general secretion pathway protein C
D SO_0166 gspD; T2aSS secretion system secretin GspD K02453 gspD; general secretion pathway protein D
D SO_0167 gspE; T2aSS secretion system assembly ATPase GspE K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D SO_0168 gspF; T2aSS secretion system inner membrane platform protein GspF K02455 gspF; general secretion pathway protein F
D SO_0169 gspG; T2aSS secretion system pseudopilus protein GspG K02456 gspG; general secretion pathway protein G
D SO_0170 gspH; T2aSS secretion system pseudopilus protein GspH K02457 gspH; general secretion pathway protein H
D SO_0171 gspI; T2aSS secretion system pseudopilus protein GspI K02458 gspI; general secretion pathway protein I
D SO_0172 gspJ; T2aSS secretion system protein GspJ K02459 gspJ; general secretion pathway protein J
D SO_0173 gspK; T2aSS secretion system pseudopilus protein GspK K02460 gspK; general secretion pathway protein K
D SO_0174 gspL; T2aSSsecretion system inner membrane platform protein GspL K02461 gspL; general secretion pathway protein L
D SO_0175 gspM; T2aSS secretion system inner membrane platform protein GspM K02462 gspM; general secretion pathway protein M
D SO_0176 gspN; T2aSS secretion system protein GspN K02463 gspN; general secretion pathway protein N
D SO_0414 pilD; type IV prepilin peptidase PilD K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D SO_0417 pilA; type IV pilin protein PilA K02650 pilA; type IV pilus assembly protein PilA
D SO_0416 pilB; type IV pilus assembly ATPase PilB K02652 pilB; type IV pilus assembly protein PilB
D SO_0415 pilC; type IV pilus inner membrane protein PilC K02653 pilC; type IV pilus assembly protein PilC
D SO_3524 pilE; type IV minor pilin protein PilE K02655 pilE; type IV pilus assembly protein PilE
D SO_0854 PilD processed protein K02655 pilE; type IV pilus assembly protein PilE
D SO_3314 pilF; outer membrane PilQ pilotin PilF K02656 pilF; type IV pilus assembly protein PilF
D SO_0281 pilM; type IV pilus biogenesis protein PilM K02662 pilM; type IV pilus assembly protein PilM
D SO_0282 pilN; type IV pilus biogenesis protein PilN K02663 pilN; type IV pilus assembly protein PilN
D SO_0283 pilO; type IV pilus biogenesis protein PilO K02664 pilO; type IV pilus assembly protein PilO
D SO_0284 pilP; PilQ chaperone PilP K02665 pilP; type IV pilus assembly protein PilP
D SO_0285 pilQ; type IV pilus secretin PilQ K02666 pilQ; type IV pilus assembly protein PilQ
D SO_3351 pilT; pilus retraction protein PilT K02669 pilT; twitching motility protein PilT
D SO_3350 pilU; pilus retraction ATPase PilU K02670 pilU; twitching motility protein PilU
D SO_3528 pilV; type IV pilin modification protein PilV K02671 pilV; type IV pilus assembly protein PilV
D SO_0852 PilD processed protein K02671 pilV; type IV pilus assembly protein PilV
D SO_3527 pilW; type IV minor pilin protein PilW K02672 pilW; type IV pilus assembly protein PilW
D SO_3526 pilX; type IV minor pilin protein PilX K02673 pilX; type IV pilus assembly protein PilX
D SO_3525 pilY; type IV pili system adhesin PilY K02674 pilY1; type IV pilus assembly protein PilY1
D SO_2611 c-di-GMP-binding protein K02676 pilZ; type IV pilus assembly protein PilZ
D SO_3520 fimT; type IV minor pilin protein FimT K08084 fimT; type IV fimbrial biogenesis protein FimT
D SO_0853 PilD processed protein K08084 fimT; type IV fimbrial biogenesis protein FimT
D SO_3521 fimU; type IV pilus biogenesis protein FimU K08085 fimU; type IV fimbrial biogenesis protein FimU
D SO_3069 fimV; type IV pilus assembly protein FimV K08086 fimV; pilus assembly protein FimV
D SO_4105 mshA; MSHA major pilin subunit MshA K10924 mshA; MSHA pilin protein MshA
D SO_3781 major pilin structural protein V10-like protein K10924 mshA; MSHA pilin protein MshA
D SO_1176 PilD processed protein K10924 mshA; MSHA pilin protein MshA
D SO_4106 mshB; MSHA minor pilin protein MshB K10925 mshB; MSHA pilin protein MshB
D SO_3655 PilD processed protein K10925 mshB; MSHA pilin protein MshB
D SO_4104 mshC; MSHA minor pilin protein MshC K10926 mshC; MSHA pilin protein MshC
D SO_4103 mshD; MshA minor pilin protein MshD K10927 mshD; MSHA pilin protein MshD
D SO_4109 mshE; MSHA pilus assembly ATPase MshE K12276 mshE; MSHA biogenesis protein MshE
D SO_4108 mshG; MSHA biogenesis protein MshG K12278 mshG; MSHA biogenesis protein MshG
D SO_4115 mshI1; MSHA biogenesis protein MshI1 K12279 mshI; MSHA biogenesis protein MshI
D SO_4114 mshJ; MSHA biogenesis protein MshJ K12280 mshJ; MSHA biogenesis protein MshJ
D SO_4113 mshK; MSHA biogenesis protein MshK K12281 mshK; MSHA biogenesis protein MshK
D SO_4112 mshL; MSHA system outer membrane secretin MshL K12282 mshL; MSHA biogenesis protein MshL
D SO_4111 mshM; MSHA biogenesis protein MshM K12283 mshM; MSHA biogenesis protein MshM
D SO_4110 mshN; MSHA biogenesis protein MshN K12284 mshN; MSHA biogenesis protein MshN
D SO_4102 mshO; MshA minor pilin protein MshO K12285 mshO; MSHA biogenesis protein MshO
D SO_4101 mshP; MSHA secretion apparatus component MshP K12286 mshP; MSHA biogenesis protein MshP
D SO_4100 mshQ; MshA pili-associated adhesin MshQ K12287 mshQ; MSHA biogenesis protein MshQ
D SO_3355 yggT; inner membrane osmoregulator protein YggT K02221 yggT; YggT family protein
D SO_1813 comEA; DNA competence protein ComEA K02237 comEA; competence protein ComEA
D SO_2803 DNA internalization-related competance protein ComEC/Rec2 family K02238 comEC; competence protein ComEC
D SO_3213 flhA; flagellar export protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D SO_3215 flhB; flagellar export protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D SO_3199 FlhB domain protein K04061 flhB2; flagellar biosynthesis protein
D SO_3228 fliF; flagellar basal-body MS-ring and collar protein FliF K02409 fliF; flagellar M-ring protein FliF
D SO_3226 fliH; flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D SO_3225 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D SO_3220 fliN; flagellar motor switching and energizing component FliN K02417 fliN; flagellar motor switch protein FliN
D SO_3219 fliO; flagellar export protein FliO K02418 fliO; flagellar protein FliO/FliZ
D SO_3218 fliP; flagellar export protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D SO_3217 fliQ; flagellar export protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D SO_3216 fliR; flagellar export protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D SO_0951 dsbC; thiol:disulfide interchange protein DsbC K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D SO_4579 fimA; P pilus subunit FimA K07345 fimA; major type 1 subunit fimbrin (pilin)
D SO_4434 cooB; type I pilus assembly chaperone CooB K21965 ecpB; Mat/Ecp fimbriae periplasmic chaperone
D SO_0866 csgB; minor curlin subunit CsgB K04335 csgB; minor curlin subunit
D SO_3687 csgE; curli secretion apparatus substrate specificity factor CsgE K04337 csgE; curli production assembly/transport component CsgE
D SO_3686 csgF; curli secretion apparatus component CsgF K04338 csgF; curli production assembly/transport component CsgF
D SO_3685 csgG; curli secretion apparatus outer membrane lipoprotein component CsgG K06214 csgG; curli production assembly/transport component CsgG
D SO_4211 secA; preprotein translocase ATPase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D SO_0052 secB; protein export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D SO_1193 secD; preprotein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D SO_3111 secD; preprotein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D SO_0218 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D SO_1194 secF; preprotein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D SO_3110 secF; preprotein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D SO_1201 secG; preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D SO_0251 secY; preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D SO_1356 ffh; signal recognition particle protein Ffh K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D SO_4586 ftsY; signal recognition particle docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D SO_3112 yajC; SecDF preprotein translocase-associated protein YajC K03210 yajC; preprotein translocase subunit YajC
D SO_0004 yidC; membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D SO_4202 tatA; twin arginine protein translocase system protein TatA K03116 tatA; sec-independent protein translocase protein TatA
D SO_4203 tatB; twin arginine protein translocase system protein TatB K03117 tatB; sec-independent protein translocase protein TatB
D SO_4204 tatC; twin arginine protein translocase system protein TatC K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:son02042]
D SO_2906 tellurite-resistance/dicarboxylate transporter (TDT) family protein K11041 eta; exfoliative toxin A/B
D SO_2815 transporter-like protein HCC family K03699 tlyC; magnesium and cobalt exporter, CNNM family
D SO_3316 protein of unknown function DUF21 with CBS domain K03699 tlyC; magnesium and cobalt exporter, CNNM family
D SO_1354 putative transporter HlyC/CorC (HCC) family K03699 tlyC; magnesium and cobalt exporter, CNNM family
D SO_4351 hlyA; hemolysin HlyA K03699 tlyC; magnesium and cobalt exporter, CNNM family
D SO_2447 yqfA; channel protein hemolysin III family subfamily YqfA K11068 hlyIII; hemolysin III
D SO_0639 collagenase K01387 colA; microbial collagenase [EC:3.4.24.3]
C 02022 Two-component system [BR:son02022]
D SO_1559 phoR; phosphate-responsive two component signal transduction system histidine kinase with PAS and DUF3329 domains PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D SO_1558 phoB; phosphate-responsive two component signal transduction system response regulator PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D SO_1945 phoQ; two component signal transduction system histidine kinase PhoQ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D SO_4648 two component signal transduction system histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D SO_1946 phoP; two component signal transduction system response regulator PhoP K07660 phoP; two-component system, OmpR family, response regulator PhoP
D SO_4647 two component signal transduction system response regulator OmpR family K07660 phoP; two-component system, OmpR family, response regulator PhoP
D SO_4634 envZ; osmolarity-responsive two component signal transduction system histidine kinase EnvZ K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D SO_4633 ompR; osmolarity-responsive two component signal transduction system response regulator OmpR K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D SO_4478 cpxA; periplasmic stress-responsive two component signal transduction system histidine kinase CpxA K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D SO_4477 cpxR; periplasmic stress-responsive two component signal transduction system response regulator CpxR K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D SO_2105 qseC; AI-3-responsive two component signal transduction system histidine kinase QseC K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
D SO_2104 qseB; AI-3-responsive two component signal transduction system response regulator QseB K07666 qseB; two-component system, OmpR family, response regulator QseB
D SO_0059 kdpE; two component signal transduction system controlling the osmosenstive K+ channel response regulator KdpE K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D SO_1230 torS; TMAO-responsive two component signal transduction system hybrid histidine kinase/response regulator TorS K07647 torS; two-component system, OmpR family, sensor histidine kinase TorS [EC:2.7.13.3]
D SO_1228 torR; TMAO-responsive two component signal transduction system response regulator TorR K07772 torR; two-component system, OmpR family, torCAD operon response regulator TorR
D SO_3988 arcA; two component signal transduction system controlling aerobic respiration response regulator ArcA K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA
D SO_3595 rstB; two component signal transduction system histidine kinase RstB K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D SO_2426 two component signal transduction system response regulator K02483 K02483; two-component system, OmpR family, response regulator
D SO_3594 rstA; two component signal transduction system controlling curli production response regulator RstA K02483 K02483; two-component system, OmpR family, response regulator
D SO_4428 two component signal transduction system response regulator OmpR family K02483 K02483; two-component system, OmpR family, response regulator
D SO_2193 two component signal transduction system controlling sortase system response regulator K02483 K02483; two-component system, OmpR family, response regulator
D SO_3981 narQ; nitrate/nitrite-responsive two component signal transduction system histidine kinase NarQ K07674 narQ; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarQ [EC:2.7.13.3]
D SO_3982 narP; nitrate/nitrite-responsive two component signal transduction system response regulator NarP K07685 narP; two-component system, NarL family, nitrate/nitrite response regulator NarP
D SO_4444 rcsB; two component signal transduction system response regulator of capsule flagella and curli biosynthesis RcsB K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB
D SO_3457 barA; two component signal transduction system hybrid histidine kinase/response regulator with DUF2222 and Hpt domains BarA K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D SO_1860 uvrY; two component signal transduction system response regulator UvrY K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D SO_0352 two component signal transduction system histidine kinase K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3]
D SO_0351 two component signal transduction system response regulator LuxR family K07693 desR; two-component system, NarL family, response regulator DesR
D SO_2822 yehU; two component signal transduction system histidine kinase with GAF sensory domain YehU K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D SO_2823 yehT; two component signal transduction system response regulator YehT K02477 K02477; two-component system, LytTR family, response regulator
D SO_4471 glnL; nitrogen-responsive two component signal transduction system histidine kinase with PAS sensory domain GlnL K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D SO_4472 glnG; nitrogen-responsive two component signal transduction system Sigma54-dependent response regulator GlnG K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D SO_3138 dctD; C4-dicarboxylate-responsive two component Sigma54-dependent signal transduction system response regulator DctD K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD
D SO_4717 tungstate-responsive two component signal transduction system histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D SO_2121 cheA; chemotaxis signal transduction system histidine kinase CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D SO_3207 cheA; chemotaxis signal transduction system histidine kinase CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D SO_2120 cheY; chemotaxis signal transduction system response regulator CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D SO_2318 cheY; chemotaxis signal transduction system response regulator CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D SO_3209 cheY; chemotaxis signal transduction system response regulator CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D SO_0549 two component signal transduction system response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D SO_2327 cheB; chemotaxis signal transduction system response regulator with glutamate methylesterase domain CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D SO_2126 cheB; chemotaxis signal transduction system response regulator with glutamate methylesterase domain CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D SO_3206 cheB; chemotaxis signal transduction system response regulator with glutamate methylesterase domain CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D SO_1989 cheV; chemotaxis signal transduction system response regulator CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D SO_3123 cheV; chemotaxis signal transduction system response regulator CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D SO_3252 cheV; chemotaxis signal transduction system response regulator CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D SO_4155 ttrS; thiosulfate/tetrathionate-responsive two component signal transduction system histidine kinase TtrS K13040 ttrS; two-component system, LuxR family, sensor histidine kinase TtrS [EC:2.7.13.3]
D SO_1417 two component signal transduction system histidine kinase K13040 ttrS; two-component system, LuxR family, sensor histidine kinase TtrS [EC:2.7.13.3]
D SO_4157 ttrR; thiosulfate/tetrathionate-responsive two component signal transduction system response regulator TtrR K13041 ttrR; two-component system, LuxR family, response regulator TtrR
D SO_1416 two component signal transduction system response regulator LuxR family K13041 ttrR; two-component system, LuxR family, response regulator TtrR
D SO_3231 flrB; two component signal transduction system controlling flagellar biosynthesis histidine kinase with PAS sensory domain FlrB K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3]
D SO_3230 flrC; two component signal transduction system controlling flagella biosynthesis Sigma54-dependent response regulator FlrC K10943 flrC; two-component system, response regulator FlrC
D SO_4173 prrB; oxygen-responsive two component signal transduction system controlling redox affected systems histidine kinase PrrB K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3]
D SO_4172 prrA; oxygen-responsive two component signal transduction system controlling redox affected systems response regulator PrrA K15012 regA; two-component system, response regulator RegA
C 02035 Bacterial motility proteins [BR:son02035]
D SO_2121 cheA; chemotaxis signal transduction system histidine kinase CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D SO_3207 cheA; chemotaxis signal transduction system histidine kinase CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D SO_2122 cheW; chemotaxis signal transduction system adaptor protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D SO_2324 cheW; chemotaxis signal transduction system adaptor protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D SO_3202 cheW; chemotaxis signal transduction system adaptor protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D SO_3203 cheW; chemotaxis signal transduction system adaptor protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D SO_3915 cheX; chemotaxis signal transduction system CheY dephosphorylase CheX K03409 cheX; chemotaxis protein CheX
D SO_2546 cheC; chemotaxis signal transduction system inhibitor of MCP methylation CheC K03410 cheC; chemotaxis protein CheC
D SO_2125 cheD; chemotaxis signal transduction system chemoreceptor glutamine deamidase CheD K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44]
D SO_2326 cheD; chemotaxis signal transduction system chemoreceptor glutamine deamidase CheD K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44]
D SO_2124 cheR; chemotaxis signal transduction system MCP methyltransferase CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D SO_2325 cheR; chemotaxis signal transduction system MCP methyltransferase CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D SO_3251 cheR; chemotaxis signal transduction system MCP methyltransferase CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D SO_2327 cheB; chemotaxis signal transduction system response regulator with glutamate methylesterase domain CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D SO_2126 cheB; chemotaxis signal transduction system response regulator with glutamate methylesterase domain CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D SO_3206 cheB; chemotaxis signal transduction system response regulator with glutamate methylesterase domain CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D SO_2120 cheY; chemotaxis signal transduction system response regulator CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D SO_2318 cheY; chemotaxis signal transduction system response regulator CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D SO_3209 cheY; chemotaxis signal transduction system response regulator CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D SO_0549 two component signal transduction system response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D SO_3208 cheZ; chemotaxis signal transduction system CheY phosphatase CheZ K03414 cheZ; chemotaxis protein CheZ
D SO_1989 cheV; chemotaxis signal transduction system response regulator CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D SO_3123 cheV; chemotaxis signal transduction system response regulator CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D SO_3252 cheV; chemotaxis signal transduction system response regulator CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D SO_2323 chemotaxis signal transduction system methyl accepting sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D SO_2123 chemotaxis signal transduction system methyl accepting sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D SO_2117 chemotaxis signal transduction system methyl accepting sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D SO_A0106 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D SO_4053 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D SO_4557 methyl-accepting chemotaxis protein with Cache sensory domain K03406 mcp; methyl-accepting chemotaxis protein
D SO_3642 energy taxis modulating methyl accepting sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D SO_1434 chemotaxis signal transduction system methyl accepting sensory transducer with 4HB_MCP sensory domain K03406 mcp; methyl-accepting chemotaxis protein
D SO_4454 energy taxis-modulating methyl-accepting chemotaxis protein with Cache_1 sensory domain K03406 mcp; methyl-accepting chemotaxis protein
D SO_3838 chemotaxis signal transduction system methyl accepting sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D SO_2083 chemotaxis signal transduction system methyl accepting sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D SO_0500 chemotaxis signal transduction system methyl accepting sensory transducer with 4HB_MCP sensory domain K03406 mcp; methyl-accepting chemotaxis protein
D SO_1056 methyl accepting sensory transducer with Cache_1 small molecule binding domain K03406 mcp; methyl-accepting chemotaxis protein
D SO_0987 methyl accepting sensory transducer with Cache_2 small molecule binding domain K03406 mcp; methyl-accepting chemotaxis protein
D SO_2240 energy taxis modulating methyl accepting sensory transducer with Cache_2 sensory domain K03406 mcp; methyl-accepting chemotaxis protein
D SO_3582 methyl-accepting chemotaxis sensory transducer with 4HB sensory domain K03406 mcp; methyl-accepting chemotaxis protein
D SO_3282 energy taxis modulating methyl accepting sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D SO_1278 chemotaxis signal transduction system methyl accepting sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D SO_3052 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D SO_4466 chemotaxis signal transduction system methyl accepting sensory transducer K03406 mcp; methyl-accepting chemotaxis protein
D SO_0584 chemotaxis signal transduction system methyl accepting sensory transducer with PAS sensory domain K03776 aer; aerotaxis receptor
D SO_1385 chemotaxis signal transduction system methyl accepting sensory transducer with PAS sensory domain K03776 aer; aerotaxis receptor
D SO_3404 methyl accepting sensory transducer with PAS sensory domain K03776 aer; aerotaxis receptor
D SO_3226 fliH; flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D SO_3225 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D SO_3224 fliJ; flagellar chaperone escort protein FliJ K02413 fliJ; flagellar protein FliJ
D SO_3219 fliO; flagellar export protein FliO K02418 fliO; flagellar protein FliO/FliZ
D SO_3218 fliP; flagellar export protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D SO_3217 fliQ; flagellar export protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D SO_3216 fliR; flagellar export protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D SO_3213 flhA; flagellar export protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D SO_3215 flhB; flagellar export protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D SO_3227 fliG; flagellar motor switching and energizing component FliG K02410 fliG; flagellar motor switch protein FliG
D SO_3221 fliM; flagellar motor switching and energizing component FliM K02416 fliM; flagellar motor switch protein FliM
D SO_3220 fliN; flagellar motor switching and energizing component FliN K02417 fliN; flagellar motor switch protein FliN
D SO_3228 fliF; flagellar basal-body MS-ring and collar protein FliF K02409 fliF; flagellar M-ring protein FliF
D SO_3242 flgI; flagellar P-ring protein FlgI K02394 flgI; flagellar P-ring protein FlgI
D SO_3253 flgA; assembly protein for flagellar basal-body P ring FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D SO_3243 flgH; flagellar L-ring protein FlgH K02393 flgH; flagellar L-ring protein FlgH
D SO_3222 fliL; flagellar basal body protein FliL K02415 fliL; flagellar protein FliL
D SO_0132 periplasmic FliL-like protein K02415 fliL; flagellar protein FliL
D SO_3229 fliE; flagellar basal-body component FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D SO_3223 fliK; flagellar hook-length control protein FliK K02414 fliK; flagellar hook-length control protein FliK
D SO_3250 flgB; flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D SO_3249 flgC; flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D SO_3248 flgD; flagellar hook assembly protein FlgD K02389 flgD; flagellar basal-body rod modification protein FlgD
D SO_3245 flgF; flagellar component of cell-proximal portion of basal-body rod FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D SO_3244 flgG; flagellar component of cell-distal portion of basal-body rod FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D SO_3241 flgJ; flagellar rod cap protein and peptidoglycan hydrolase FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ
D SO_3247 flgE; flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE
D SO_3240 flgK; flagellar hook-filament junction protein FlgK K02396 flgK; flagellar hook-associated protein 1
D SO_3239 flgL; flagellar hook-associated protein FlgL K02397 flgL; flagellar hook-associated protein 3 FlgL
D SO_3255 flgN; secretion chaperone for FlgK and FlgL FlgN K02399 flgN; flagellar biosynthesis protein FlgN
D SO_3256 flgP; outer membrane lipoprotein required for flagellar motility FlgP K09860 flgP; outer membrane protein FlgP
D SO_3936 motX; flagellar rotation associated protein MotX K21217 motX; sodium-type polar flagellar protein MotX
D SO_2754 motY; smf-dependent flagellar motor protein MotY K21218 motY; sodium-type flagellar protein MotY
D SO_4160 fliUV; lysine-N-methylase FliUV K18475 fliB; lysine-N-methylase [EC:2.1.1.-]
D SO_3237 fliC; flagellin FliC K02406 fliC; flagellin
D SO_3238 fliC; flagellin FliC K02406 fliC; flagellin
D SO_3235 fliD; flagellar filament capping protein FliD K02407 fliD; flagellar hook-associated protein 2
D SO_3233 fliS; chaperone for FliC flagellin FliS K02422 fliS; flagellar secretion chaperone FliS
D SO_3210 fliA; RNA polymerase sigma-28 factor for flagellar operon FliA K02405 fliA; RNA polymerase sigma factor FliA
D SO_1529 pomA; stator-force generator of Na+ coupled flagellar motor PomA K02556 motA; chemotaxis protein MotA
D SO_4287 motA; stator-force generator of H+ coupled flagellar motor MotA K02556 motA; chemotaxis protein MotA
D SO_1530 pomB; stator-force generator of Na+ coupled flagellar motor PomB K02557 motB; chemotaxis protein MotB
D SO_4286 motB; stator-force generator of H+ coupled flagellar motor MotB K02557 motB; chemotaxis protein MotB
D SO_3232 flrA; Sigma54-dependent transcriptional regulator for flagellar biosynthesis FlrA K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D SO_3231 flrB; two component signal transduction system controlling flagellar biosynthesis histidine kinase with PAS sensory domain FlrB K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3]
D SO_3230 flrC; two component signal transduction system controlling flagella biosynthesis Sigma54-dependent response regulator FlrC K10943 flrC; two-component system, response regulator FlrC
D SO_3254 flgM; flagellar biosynthesis anti-sigma factor FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
D SO_3236 flaG; uncharacterized flagella locus protein FlaG K06603 flaG; flagellar protein FlaG
D SO_3212 flhF; flagellar polar localization control system flagellar assembly determinant GTPase FlhF K02404 flhF; flagellar biosynthesis protein FlhF
D SO_3211 flhG; flagellar polar localization control system FlhF inhibitory ATPase FlhG K04562 flhG; flagellar biosynthesis protein FlhG
D SO_3351 pilT; pilus retraction protein PilT K02669 pilT; twitching motility protein PilT
D SO_3350 pilU; pilus retraction ATPase PilU K02670 pilU; twitching motility protein PilU
D SO_0417 pilA; type IV pilin protein PilA K02650 pilA; type IV pilus assembly protein PilA
D SO_0416 pilB; type IV pilus assembly ATPase PilB K02652 pilB; type IV pilus assembly protein PilB
D SO_0415 pilC; type IV pilus inner membrane protein PilC K02653 pilC; type IV pilus assembly protein PilC
D SO_0414 pilD; type IV prepilin peptidase PilD K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D SO_3314 pilF; outer membrane PilQ pilotin PilF K02656 pilF; type IV pilus assembly protein PilF
D SO_0285 pilQ; type IV pilus secretin PilQ K02666 pilQ; type IV pilus assembly protein PilQ
D SO_0284 pilP; PilQ chaperone PilP K02665 pilP; type IV pilus assembly protein PilP
D SO_0283 pilO; type IV pilus biogenesis protein PilO K02664 pilO; type IV pilus assembly protein PilO
D SO_0282 pilN; type IV pilus biogenesis protein PilN K02663 pilN; type IV pilus assembly protein PilN
D SO_0281 pilM; type IV pilus biogenesis protein PilM K02662 pilM; type IV pilus assembly protein PilM
D SO_2611 c-di-GMP-binding protein K02676 pilZ; type IV pilus assembly protein PilZ
D SO_3528 pilV; type IV pilin modification protein PilV K02671 pilV; type IV pilus assembly protein PilV
D SO_0852 PilD processed protein K02671 pilV; type IV pilus assembly protein PilV
D SO_3527 pilW; type IV minor pilin protein PilW K02672 pilW; type IV pilus assembly protein PilW
D SO_3526 pilX; type IV minor pilin protein PilX K02673 pilX; type IV pilus assembly protein PilX
D SO_3525 pilY; type IV pili system adhesin PilY K02674 pilY1; type IV pilus assembly protein PilY1
D SO_3524 pilE; type IV minor pilin protein PilE K02655 pilE; type IV pilus assembly protein PilE
D SO_0854 PilD processed protein K02655 pilE; type IV pilus assembly protein PilE
D SO_4579 fimA; P pilus subunit FimA K07345 fimA; major type 1 subunit fimbrin (pilin)
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:son04812]
D SO_4098 mreB; cell wall structural complex component MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D SO_2082 rod shape-determining-related protein K03569 mreB; rod shape-determining protein MreB and related proteins
D SO_4215 ftsZ; cell division filament FtsZ K03531 ftsZ; cell division protein FtsZ
D SO_4216 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D SO_2576 minC; septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D SO_2577 minD; membrane ATPase that activates MinC MinD K03609 minD; septum site-determining protein MinD
D SO_2578 minE; cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor
D SO_4756 parA; chromosome partitioning protein ParA K03496 parA; chromosome partitioning protein
D SO_3331 protein with CobQ/CobB/MinD/ParA nucleotide binding domain K03496 parA; chromosome partitioning protein
D SO_3204 ParA family protein K03496 parA; chromosome partitioning protein
D SO_A0006 ParA family protein K03496 parA; chromosome partitioning protein
D SO_2808 protein with CobQ/CobB/MinD/ParA nucleotide binding domain K03496 parA; chromosome partitioning protein
D SO_A0061 repA; plasmid stability/partitioning determinant RepA K03496 parA; chromosome partitioning protein
D SO_A0095 parA; plasmid partition protein ParA K03496 parA; chromosome partitioning protein
D SO_4755 parB; chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D SO_A0031 ParB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D SO_A0096 parB; plasmid partition protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:son04147]
D SO_2016 htpG; heat shock chaperone HtpG K04079 HSP90A; molecular chaperone HtpG
D SO_3440 eno; enolase Eno K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D SO_2345 gapA; glyceraldehyde-3-phosphate dehydrogenase (NAD+) GapA K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D SO_2347 gapB; glyceraldehyde-3-phosphate dehydrogenase GapB K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D SO_0932 pgk; phosphoglycerate kinase Pgk K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D SO_2491 pykA; pyruvate kinase II PykA K00873 PK; pyruvate kinase [EC:2.7.1.40]
D SO_3812 ppiA; periplasmic peptidyl-prolyl cis-trans isomerase PpiA K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D SO_2756 tsaA; peroxiredoxin TsaA K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24]
D SO_1377 putative negative regulator of univalent cation permeability K07192 FLOT; flotillin
D SO_0704 groEL; 60 kDa chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D SO_1126 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D SO_3547 pgi; glucose-6-phosphate isomerase Pgi K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D SO_3990 dpp4; periplasmic dipeptidylpeptidase IV Dpp4 K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
D SO_3293 guaB; inosine-5-monophosphate dehydrogenase GuaB K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D SO_0217 tufB; translation elongation factor Tu TufB K02358 tuf; elongation factor Tu
D SO_0229 tufA; translation elongation factor Tu TufA K02358 tuf; elongation factor Tu
D SO_2723 hinT; purine nucleoside phosphoramidase HinT K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D SO_2581 fadD; long chain fatty acid CoA ligase FadD K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D SO_0075 icfE; long-chain-fatty-acid--CoA ligase IcfE K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D SO_3664 fadD; long chain fatty acid CoA ligase FadD K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D SO_1677 ivdA; 3-ketoacyl-CoA thiolase IvdA K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D SO_2494 peptidase family M2 K01283 ACE; peptidyl-dipeptidase A [EC:3.4.15.1]
D SO_2018 adk; adenylate kinase Adk K00939 adk; adenylate kinase [EC:2.7.4.3]
D SO_2012 apt; adenine phosphoribosyltransferase Apt K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D SO_0279 argH; argininosuccinate lyase ArgH K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D SO_0278 argG; argininosuccinate synthase ArgG K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D SO_3991 fbp; fructose-16-bisphosphatase Fbp K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D SO_0694 galK; galactokinase GalK K00849 galK; galactokinase [EC:2.7.1.6]
D SO_1494 glgB; 1,4-alpha-glucan branching enzyme GlgB K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D SO_4230 glpK; glycerol kinase GlpK K00864 glpK; glycerol kinase [EC:2.7.1.30]
D SO_1268 puuA; gamma-glutamyl-putrescine synthase PuuA K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D SO_4410 glnA; glutamine synthetase GlnA K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D SO_2587 hemB; delta-aminolevulinic acid dehydratase HemB K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D SO_4208 hemB; delta-aminolevulinic acid dehydratase HemB K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D SO_1962 hppD; 4-hydroxyphenylpyruvate dioxygenase HppD K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
D SO_1667 phhB; pterin-4-alpha-carbinolamine dehydratase PhhB K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96]
D SO_0830 phoA; periplasmic alkaline phosphatase PhoA K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D SO_0862 serA; D-3-phosphoglycerate dehydrogenase SerA K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D SO_0442 purH; bifunctional IMP cyclohydrolase/phosphoribosylaminoimidazolecarboxamide formyltransferase PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D SO_0426 lpdA; dihydrolipoamide dehydrogenase LpdA K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D SO_3144 etfA; electron transfer flavoprotein alpha subunit EtfA K03522 fixB; electron transfer flavoprotein alpha subunit
D SO_2489 zwf; glucose-6-phosphate 1-dehydrogenase Zwf K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D SO_1200 tpiA; triosephosphate isomeraseTpiA K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D SO_1691 blc; lipocalin family lipoprotein Blc K03098 APOD; apolipoprotein D and lipocalin family protein
C 02048 Prokaryotic defense system [BR:son02048]
D SO_0380 hsdR; type I restriction-modification system restriction endonuclease cleavage subunit HsdR K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D SO_4267 hsdR; type I restriction-modification system restriction endonuclease cleavage subunit HsdR K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D SO_0382 hsdS; type I restriction-modification system restriction endonuclease DNA specificity subunit HsdS K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D SO_4264 hsdS; type I restriction-modification system restriction endonuclease DNA specificity subunit HsdS K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D SO_1460 hsdS; type I restriction-modification system restriction endonuclease DNA specificity subunit HsdS K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D SO_0383 hsdM; type I restriction-modification system N6-adenine DNA methyltransferase HsdM K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D SO_4265 hsdM; type I restriction-modification system N6-adenine DNA methyltransferase HsdM K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D SO_1457 type II restriction-modification system methyltransferase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D SO_0289 dam; N6-adenine DNA methyltransferase Dam K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D SO_0690 Mu phage DNA adenine methylase Dam family K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D SO_3006 dcm; Lambda phage type II restriction modification system cytosine-5 DNA methyltransferase Dcm K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D SO_A0041 pemK; toxin module of toxin-antitoxin system mRNA endonuclease-like PemK K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D SO_0063 toxin-antitoxin system toxin HipA family K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D SO_3170 toxin-antitoxin system toxin HipA family K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D SO_0706 toxin-antitoxin system toxin HipA family K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D SO_1809 pspC; phage shock protein C PspC K03973 pspC; phage shock protein C
D SO_1808 pspB; phage shock protein B PspB K03970 pspB; phage shock protein B
D SO_A0088 ISSpu16 toxin-antitoxin system toxin RelE family K19092 parE1_3_4; toxin ParE1/3/4
D SO_4641 toxin-antitoxin system toxin RelE family K19092 parE1_3_4; toxin ParE1/3/4
D SO_A0079 type II toxin-antitoxin system toxin component RelE family K19092 parE1_3_4; toxin ParE1/3/4
D SO_A0078 type II toxin-antitoxin system antidote component CC2985 family K07746 parD1_3_4; antitoxin ParD1/3/4
D SO_A0072 toxin-antitoxin system toxin RelE family K19166 higB; mRNA interferase HigB [EC:3.1.-.-]
D SO_A0022 toxin-antitoxin system toxin component RelE family K07334 higB-1; toxin HigB-1
D SO_A0071 toxin-antitoxin system antidote transcriptional repressor Xre family K18831 higA; HTH-type transcriptional regulator / antitoxin HigA
D SO_A0023 toxin-antitoxin system antidote component HigA family K21498 higA-1; antitoxin HigA-1
D SO_4215 ftsZ; cell division filament FtsZ K03531 ftsZ; cell division protein FtsZ
D SO_4098 mreB; cell wall structural complex component MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D SO_2082 rod shape-determining-related protein K03569 mreB; rod shape-determining protein MreB and related proteins
D SO_3897 parC; DNA topoisomerase IV A subunit ParC K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D SO_3899 parE; DNA topoisomerase IV B subunit ParE K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D SO_3130 gltX; glutamyl-tRNA synthetase GltX K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D SO_1453 yfjZ; Mu phage lytic protein YfjZ K18838 cbeA; cytoskeleton bundling-enhancing protein CbeA and related proteins
D SO_1340 protein of unknown function DUF1434 K19168 cptA; toxin CptA
D SO_1339 protein of unknown function DUF339 K09159 cptB; antitoxin CptB
D SO_2264 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels [BR:son04040]
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides [BR:son04052]
D SO_1981 nadV; nicotinamide phosphoribosyltransferase NadV K03462 NAMPT; nicotinamide phosphoribosyltransferase [EC:2.4.2.12]
C 04515 Cell adhesion molecules
C 04090 CD molecules [BR:son04090]
D SO_3990 dpp4; periplasmic dipeptidylpeptidase IV Dpp4 K01278 DPP4; dipeptidyl-peptidase 4 [EC:3.4.14.5]
D SO_2494 peptidase family M2 K01283 ACE; peptidyl-dipeptidase A [EC:3.4.15.1]
C 01504 Antimicrobial resistance genes [BR:son01504]
D SO_0837 blaA; class D carbapenem-hydrolyzing beta-lactamase BlaA K18976 blaOXA-48; beta-lactamase class D OXA-48 [EC:3.5.2.6]
D SO_0336 sodium:proton antiporter NhaC family K18218 tet35; tetracycline resistance efflux pump
D SO_2481 sodium:proton antiporter NhaC family K18218 tet35; tetracycline resistance efflux pump
D SO_1007 lysW; lysine transporter LysW K18218 tet35; tetracycline resistance efflux pump
D SO_1763 satA; streptogramin A acetyl transferase SatA K18234 vat; virginiamycin A acetyltransferase [EC:2.3.1.-]
D SO_4299 catB; chloramphenicol O-acetyltransferase CatB K00638 catB; chloramphenicol O-acetyltransferase type B [EC:2.3.1.28]
D SO_4064 mcbG; pentapeptide repeat protein McbG K18555 qnr; fluoroquinolone resistance protein
D SO_1945 phoQ; two component signal transduction system histidine kinase PhoQ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D SO_4648 two component signal transduction system histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D SO_1946 phoP; two component signal transduction system response regulator PhoP K07660 phoP; two-component system, OmpR family, response regulator PhoP
D SO_4647 two component signal transduction system response regulator OmpR family K07660 phoP; two-component system, OmpR family, response regulator PhoP
D SO_4693 vmeA; proton-coupled multidrug efflux pump MFP component VmeA K03585 acrA; membrane fusion protein, multidrug efflux system
D SO_1881 HAE1 family efflux pump MFP component K03585 acrA; membrane fusion protein, multidrug efflux system
D SO_4327 vexB; RND-type multidrug/detergent efflux system MFP component VexB K03585 acrA; membrane fusion protein, multidrug efflux system
D SO_3483 HAE1 family efflux pump MFP component K03585 acrA; membrane fusion protein, multidrug efflux system
D SO_4692 vmeB; proton-coupled multidrug efflux pump permease component VmeB K18138 acrB; multidrug efflux pump
D SO_1882 HAE1 family efflux pump permease component K18138 acrB; multidrug efflux pump
D SO_4328 vexA; RND-type multidrug/detergent efflux system permease component VexA K18138 acrB; multidrug efflux pump
D SO_3493 mexE; HAE1 family efflux pump MFP component MexE K18298 mexE; membrane fusion protein, multidrug efflux system
D SO_3492 mexF; HAE1 family efflux pump permease component MexF K18299 mexF; multidrug efflux pump
D SO_3277 transcriptional repressor of RND efflux transporter TetR family K18301 mexL; TetR/AcrR family transcriptional regulator, mexJK operon transcriptional repressor
D SO_1687 cueR; copper-responsive transcriptional regulator of copper exporter CueR K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D SO_3904 tolC; global secretion system secretin TolC K12340 tolC; outer membrane protein
D SO_1821 outer membrane porin K09476 ompF; outer membrane pore protein F
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:son00537]
D SO_0830 phoA; periplasmic alkaline phosphatase PhoA K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins [BR:son03200]
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:son03100]
D SO_t004 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D SO_t095 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D SO_t063 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D SO_t070 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D SO_t072 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D SO_t100 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SO_t078 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SO_t025 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SO_t083 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SO_t089 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SO_t087 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SO_t085 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SO_t088 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SO_t086 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D SO_t048 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D SO_t049 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D SO_t050 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D SO_t051 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D SO_t052 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D SO_t001 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D SO_t102 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D SO_t053 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D SO_t054 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D SO_t034 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D SO_t042 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D SO_t016 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D SO_t017 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D SO_t020 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D SO_t065 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D SO_t067 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D SO_t071 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D SO_t068 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D SO_t069 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D SO_t066 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D SO_t009 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D SO_t011 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D SO_t012 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D SO_t033 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D SO_t010 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D SO_t041 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D SO_t007 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D SO_t026 tRNA-His K14226 tRNA-His; tRNA His
D SO_t099 tRNA-His K14226 tRNA-His; tRNA His
D SO_t003 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D SO_t096 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D SO_t064 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D SO_t021 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SO_t015 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SO_t019 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SO_t094 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SO_t092 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SO_t093 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SO_t035 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SO_t036 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SO_t043 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D SO_t055 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D SO_t056 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D SO_t058 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D SO_t059 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D SO_t061 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D SO_t062 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D SO_t057 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D SO_t014 tRNA-Met K14230 tRNA-Met; tRNA Met
D SO_t018 tRNA-Met K14230 tRNA-Met; tRNA Met
D SO_t023 tRNA-Met K14230 tRNA-Met; tRNA Met
D SO_t022 tRNA-Met K14230 tRNA-Met; tRNA Met
D SO_t027 tRNA-Met K14230 tRNA-Met; tRNA Met
D SO_t028 tRNA-Met K14230 tRNA-Met; tRNA Met
D SO_t029 tRNA-Met K14230 tRNA-Met; tRNA Met
D SO_t030 tRNA-Met K14230 tRNA-Met; tRNA Met
D SO_t079 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D SO_t081 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D SO_t091 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D SO_t024 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D SO_t098 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D SO_t097 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D SO_t037 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D SO_t031 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D SO_t032 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D SO_t044 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D SO_t084 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D SO_t090 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D SO_t038 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D SO_t101 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D SO_t008 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D SO_t005 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D SO_t080 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D SO_t082 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D SO_t013 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D SO_t006 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D SO_t046 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D SO_t045 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D SO_t047 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D SO_t074 tRNA-Val K14237 tRNA-Val; tRNA Val
D SO_t076 tRNA-Val K14237 tRNA-Val; tRNA Val
D SO_t075 tRNA-Val K14237 tRNA-Val; tRNA Val
D SO_t077 tRNA-Val K14237 tRNA-Val; tRNA Val
D SO_t073 tRNA-Val K14237 tRNA-Val; tRNA Val
D SO_t039 tRNA-Val K14237 tRNA-Val; tRNA Val
D SO_t040 tRNA-Val K14237 tRNA-Val; tRNA Val
D SO_t002 tRNA-Sec K14238 tRNA-Sec; tRNA Sec
D SO_r001 rrsA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SO_r004 rrsB; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SO_r007 rrsC; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SO_r012 rrsD; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SO_r015 rrsE; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SO_r018 rrsF; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SO_r021 rrsG; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SO_r024 rrsH; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SO_r027 rrsI; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D SO_r002 rrlA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SO_r005 rrlB; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SO_r008 rrlC; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SO_r011 rrlD; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SO_r014 rrlE; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SO_r017 rrlF; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SO_r020 rrlG; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SO_r023 rrlH; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SO_r026 rrlI; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D SO_r003 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SO_r006 rrfB; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SO_r009 rrfC; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SO_r010 rrfD; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SO_r013 rrfE; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SO_r016 rrfF; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SO_r019 rrfJ; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SO_r022 rrfH; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SO_r025 rrfI; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SO_r028 rrfG; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D SO_m005 ffs; RNA component of signal recognition particle K01983 ffs; SRP RNA
D SO_m001 rnpB; RNaseP RNA K01978 rnpB; M1 RNA
D SO_m003 tmRNA; transfer-messenger RNA TmRNA K15035 ssrA; transfer-messenger RNA
D SO_m009 csrB2; CsrB/RsmB K18515 csrB; small regulatory RNA CsrB
D SO_m006 spf; spot 42 RNA K18527 spf; small regulatory RNA Spot 42
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D SO_1745 oleD; polyolefin biosynthetic pathway dehydrogenase/isomerase OleD K22320 oleD; 2-alkyl-3-oxoalkanoate reductase [EC:1.1.1.412]
D SO_3683 calB; coniferyl aldehyde dehydrogenase CalB K00154 E1.2.1.68; coniferyl-aldehyde dehydrogenase [EC:1.2.1.68]
D SO_0538 gapA; glyceraldehyde-3-phosphate dehydrogenase (NAD+) GapA K25224 gapdh; glyceraldehyde-3-phosphate dehydrogenase (arsenate-transferring) [EC:1.2.1.107]
D SO_2419 fadH; NADP-dependent 24-dienoyl-CoA reductase FadH K00219 fadH; 2,4-dienoyl-CoA reductase (NADPH2) [EC:1.3.1.34]
D SO_3049 aldehyde oxidase / xanthine dehydrogenase family FeS subunit K07302 iorA; isoquinoline 1-oxidoreductase subunit alpha [EC:1.3.99.16]
D SO_3048 aldehyde oxidase / xanthine dehydrogenase family molybdopterin cytosine dinucleotide-binding subunit K07303 iorB; isoquinoline 1-oxidoreductase subunit beta [EC:1.3.99.16]
D SO_4453 etfQ; electron transfer flavoprotein-ubiquinone oxidoreductase EtfQ K00311 ETFDH; electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1]
D SO_3585 azr; NADPH-dependent azoreductase Azr K03206 azr; azobenzene reductase [EC:1.7.1.6]
D SO_4396 azoR; FMN-dependent NADH-azoreductase AzoR K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17]
D SO_0956 ahpF; alkyl hydroperoxide reductase flavoprotein component AhpF K03387 ahpF; NADH-dependent peroxiredoxin subunit F [EC:1.8.1.-]
D SO_4047 SoxA-like diheme cytochrome c K19713 tsdA; thiosulfate dehydrogenase [EC:1.8.2.2]
D SO_2337 msrA; peptide methionine sulfoxide reductase MsrA K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D SO_2588 selR; methionine-R-sulfoxide reductase SelR K12267 msrAB; peptide methionine sulfoxide reductase msrA/msrB [EC:1.8.4.11 1.8.4.12]
D SO_1576 yfcG; disulfide reductase YfcG K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-]
D SO_2042 yedY; oxidoreductase molybdenum-binding subunit YedY K07147 msrP; methionine sulfoxide reductase catalytic subunit [EC:1.8.-.-]
D SO_2178 ccpA; diheme cytochrome c5 peroxidase CcpA K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5]
D SO_1877 bcp; thioredoxin-dependent thiol peroxidase Bcp K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D SO_3341 tpx; thiol peroxidase Tpx K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D SO_0958 ahpC; alkyl hydroperoxide reductase peroxiredoxin component AhpC K24119 ahpC; NADH-dependent peroxiredoxin subunit C [EC:1.11.1.26]
D SO_0976 ohrA; peroxiredoxin OhrA K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28]
D SO_0740 Dyp-type heme-dependent peroxidase K07223 yfeX; porphyrinogen peroxidase [EC:1.11.1.-]
D SO_2098 hyaB; periplasmic [Ni-Fe] hydrogenase large subunit HyaB K05922 hydB; quinone-reactive Ni/Fe-hydrogenase large subunit [EC:1.12.5.1]
D SO_2099 hyaA; periplasmic [Ni-Fe] hydrogenase small subunit HyaA K05927 hydA; quinone-reactive Ni/Fe-hydrogenase small subunit [EC:1.12.5.1]
D SO_3920 hydA; periplasmic [Fe-Fe] hydrogenase large subunit HydA K00533 E1.12.7.2L; ferredoxin hydrogenase large subunit [EC:1.12.7.2]
D SO_3921 hydB; periplasmic [Fe-Fe] hydrogenase small subunit HydB K00534 E1.12.7.2S; ferredoxin hydrogenase small subunit [EC:1.12.7.2]
D SO_0895 pirin family protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D SO_3913 piuC; Fur regulated PKHD-type hydroxylase PiuC K07336 K07336; PKHD-type hydroxylase [EC:1.14.11.-]
D SO_3030 pubA; putrescine monooxygenase PubA K27501 alcA; putrescine N-hydroxylase [EC:1.14.13.252]
D SO_0139 ftn; ferritin Ftn K02217 ftnA; ferritin [EC:1.16.3.2]
D SO_0747 fpr; ferredoxin--NADP reductase Fpr K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D SO_2871 arsC; glutaredoxin-dependent arsenate reductase ArsC K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1]
D SO_0533 arsC2; thioredoxin-coupled cytoplasmic arsenate reductase ArsC2 K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4]
D SO_2833 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein NrdG K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4]
D SO_2913 pflA; pyruvate formate-lyase 1 activating enzyme PflA K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D SO_2408 glycine radical enzyme activase YjjW family K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D SO_1364 hcr; NADH oxidoreductase Hcr K11933 hcr; NADH oxidoreductase Hcr [EC:1.-.-.-]
D SO_3434 pcm; protein-L-isoaspartate O-methyltransferase Pcm K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D SO_3379 cfaS; cyclopropane-fatty-acyl-phospholipid synthase CfaS K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D SO_4520 coproporphyrinogen III oxidase oxygen-independent K23078 mqnK; menaquinone C8-methyltransferase [EC:2.1.1.350]
D SO_1961 maa; maltose O-acetyltransferase Maa K00661 maa; maltose O-acetyltransferase [EC:2.3.1.79]
D SO_2901 3-oxoacyl-(acyl-carrier-protein) synthase III domain protein K16872 E2.3.1.207; beta-ketodecanoyl-[acyl-carrier-protein] synthase [EC:2.3.1.207]
D SO_1177 lnt; apolipoprotein N-acyltransferase Lnt K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D SO_0916 bifunctional MarR family transcriptional regulator/acteyltransferase GNAT family K03828 yjgM; putative acetyltransferase [EC:2.3.1.-]
D SO_4393 ysnE; acteyltransferase GNAT family YsnE K03829 yedL; putative acetyltransferase [EC:2.3.1.-]
D SO_3323 acteyltransferase GNAT family K03830 yafP; putative acetyltransferase [EC:2.3.1.-]
D SO_3324 acteyltransferase GNAT family K03830 yafP; putative acetyltransferase [EC:2.3.1.-]
D SO_2623 aat; leucyl/phenylalanyl-tRNA--protein transferase Aat K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6]
D SO_2150 integral membrane transglutaminase family protein with DUF3488 domain K22452 tgpA; protein-glutamine gamma-glutamyltransferase [EC:2.3.2.13]
D SO_2624 bpt; leucyl-tRNA-protein transferase Bpt K21420 bpt; leucyl-tRNA---protein transferase [EC:2.3.2.29]
D SO_1742 oleA; polyolefin biosynthetic pathway thiolase OleA K22317 oleA; acyl-CoA:acyl-CoA alkyltransferase [EC:2.3.3.20]
D SO_2387 DTW domain-containing protein K05812 DTWD2; tRNA-uridine aminocarboxypropyltransferase [EC:2.5.1.25]
D SO_4554 DTW domain-containing protein K05812 DTWD2; tRNA-uridine aminocarboxypropyltransferase [EC:2.5.1.25]
D SO_1334 lgt; prolipoprotein diacylglyceryl transferase Lgt K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D SO_1109 apbE; Fe-S assembly/repair lipoprotein ApbE K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D SO_2103 cytoplasmic ApbE family protein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D SO_1090 cytoplasmic ApbE family protein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D SO_4283 ApbE family lipoprotein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D SO_1418 ApbE family protein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D SO_2645 ydiA; putative phosphotransferase YdiA K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33]
D SO_3760 glnE; [glutamate-ammonia-ligase] adenylyltransferase GlnE K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]
D SO_0330 uncharacterized protein UPF0061 family K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108]
D SO_0579 serine/threonine protein kinase K08282 E2.7.11.1; non-specific serine/threonine protein kinase [EC:2.7.11.1]
D SO_3872 assT; arylsulfate sulfotransferase AssT K01023 assT; arylsulfate sulfotransferase [EC:2.8.2.22]
D SO_0080 acyl-CoA thioester hydrolase, YbgC/YbaW family K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D SO_2752 ybgC; TolA energy-transducing system-associated acyl-CoA thioesterase YbgC K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D SO_4375 acyl-CoA thioester hydrolase, YbgC/YbaW family in fatty acid biosynthesis locus K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D SO_0077 4-hydroxybenzoyl-CoA thioesterase family protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D SO_1256 acyl-CoA thioester hydrolase, YbgC/YbaW family K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D SO_3017 trpH; PHP family metal-dependent phosphoesterases TrpH K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D SO_3082 sixA; phosphohistidine phosphatase SixA K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D SO_3821 diguanylate phosphodiesterase K26148 K26148; c-di-GMP phosphodiesterase [EC:3.1.4.52]
D SO_0860 two component signal transduction system response regulator with HD domain K07814 K07814; cyclic di-GMP phosphodiesterase [EC:3.1.4.-]
D SO_4003 metal dependent phosphohydrolase with response regulator receiver modulation K07814 K07814; cyclic di-GMP phosphodiesterase [EC:3.1.4.-]
D SO_4711 cyclic di-GMP hydrolase K25135 K25135; cyclic di-GMP phosphodiesterase [EC:3.1.4.-]
D SO_1606 alkyl sulfatase K25227 sdsA1; linear primary-alkylsulfatase [EC:3.1.6.21]
D SO_0833 endA; endonuclease I EndA K01150 endA; deoxyribonuclease I [EC:3.1.21.1]
D SO_4206 tatD; deoxyribonuclease TatD K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D SO_2610 ycfH; TatD family deoxyribonuclease YcfH K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D SO_1213 hydrolase, TatD family K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D SO_2333 ybfF; putative esterase YbfF K01175 ybfF; esterase [EC:3.1.-.-]
D SO_0659 Mu phage lysozyme K01185 E3.2.1.17; lysozyme [EC:3.2.1.17]
D SO_2973 R; Lambda phage lysozyme R K01185 E3.2.1.17; lysozyme [EC:3.2.1.17]
D SO_2530 def; peptide deformylase Def K01462 PDF; peptide deformylase [EC:3.5.1.88]
D SO_1062 def; peptide deformylase Def K01462 PDF; peptide deformylase [EC:3.5.1.88]
D SO_0032 def; peptide deformylase Def K01462 PDF; peptide deformylase [EC:3.5.1.88]
D SO_0918 aaiD; acyl-homoserine lactone acylase AaiD K07116 pvdQ; acyl-homoserine-lactone acylase [EC:3.5.1.97]
D SO_1922 yqfB; putative RNA-binding protein YqfB K09900 E3.5.1.135; N4-acetylcytidine amidohydrolase [EC:3.5.1.135]
D SO_1404 endoribonuclease L-PSP K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D SO_3769 ygiF; adenylate cyclase YgiF K18446 ygiF; triphosphatase [EC:3.6.1.25]
D SO_2782 yceF; Maf septum formation family protein YceF K25422 yceF; 7-methyl-GTP pyrophosphatase [EC:3.6.1.-]
D SO_2153 AAA+ ATPase MoxR MRP family K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D SO_3090 MoxR-like ATPase in aerotolerance operon K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D SO_4650 alpha/beta hydrolase family of unknown function DUF1234 K07002 RBBP9; serine hydrolase [EC:3.-.-.-]
D SO_1743 oleB; polyolefin biosynthetic pathway thioesterase OleB K22318 oleB; cis-3-alkyl-4-acyloxetan-2-one decarboxylase [EC:4.1.1.114]
D SO_0598 yjeF; hydroxyethylthiazole kinase-related protein YjeF K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D SO_0453 fklB; peptidyl-prolyl cis-trans isomerase FklB K01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8]
D SO_1390 fklB; peptidyl-prolyl cis-trans isomerase FklB K01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8]
D SO_1492 surface bound cyclophilin-type A-like peptidylprolyl cis-trans isomerase lipoprotein K01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8]
D SO_1744 oleC; polyolefin biosynthetic pathway AMP transfer protein OleC K22319 oleC; olefin beta-lactone synthetase [EC:6.1.3.1]
D SO_3805 mpl; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase Mpl K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45]
D SO_2204 DNA ligase ATP-dependent K26441 lig; DNA ligase [EC:6.5.1.1]
D SO_2511 rnfD; ion (H+ or Na+)-translocating NADH:ferredoxin oxidoreductase subunit RnfD K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2]
D SO_2510 rnfC; ion (H+ or Na+)-translocating NADH:ferredoxin oxidoreductase subunit RnfC K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2]
D SO_2509 rnfB; ion (H+ or Na+)-translocating NADH:ferredoxin oxidoreductase subunit RnfB K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2]
D SO_0902 nqrA; Na-translocating NADH-quinone reductase subunit A NqrA K00346 nqrA; Na+-transporting NADH:ubiquinone oxidoreductase subunit A [EC:7.2.1.1]
D SO_1103 nqrA; Na-translocating NADH-quinone reductase subunit A NqrA K00346 nqrA; Na+-transporting NADH:ubiquinone oxidoreductase subunit A [EC:7.2.1.1]
D SO_0903 nqrB; Na-translocating NADH-quinone reductase subunit B NqrB K00347 nqrB; Na+-transporting NADH:ubiquinone oxidoreductase subunit B [EC:7.2.1.1]
D SO_1104 nqrB; Na-translocating NADH-quinone reductase subunit B NqrB K00347 nqrB; Na+-transporting NADH:ubiquinone oxidoreductase subunit B [EC:7.2.1.1]
D SO_0904 nqrC; Na-translocating NADH-quinone reductase subunit C NqrC K00348 nqrC; Na+-transporting NADH:ubiquinone oxidoreductase subunit C [EC:7.2.1.1]
D SO_1105 nqrC; Na-translocating NADH-quinone reductase subunit C NqrC K00348 nqrC; Na+-transporting NADH:ubiquinone oxidoreductase subunit C [EC:7.2.1.1]
D SO_0905 nqrD; Na-translocating NADH-quinone reductase subunit D NqrD K00349 nqrD; Na+-transporting NADH:ubiquinone oxidoreductase subunit D [EC:7.2.1.1]
D SO_1106 nqrD; Na-translocating NADH-quinone reductase subunit D NqrD K00349 nqrD; Na+-transporting NADH:ubiquinone oxidoreductase subunit D [EC:7.2.1.1]
D SO_0906 nqrE; Na-translocating NADH-quinone reductase subunit E NqrE K00350 nqrE; Na+-transporting NADH:ubiquinone oxidoreductase subunit E [EC:7.2.1.1]
D SO_1107 nqrE; Na-translocating NADH-quinone reductase subunit E NqrE K00350 nqrE; Na+-transporting NADH:ubiquinone oxidoreductase subunit E [EC:7.2.1.1]
D SO_0907 nqrF; Na-translocating NADH-quinone reductase subunit F NqrF K00351 nqrF; Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:7.2.1.1]
D SO_1108 nqrF; Na-translocating NADH-quinone reductase subunit F NqrF K00351 nqrF; Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:7.2.1.1]
D SO_2359 ccoI; Cbb3-type cytochrome oxidase-associated copper translocating P-ATPase CcoI K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9]
C 99981 Carbohydrate metabolism
D SO_0875 sfsA; sugar fermentation stimulation protein SfsA K06206 sfsA; sugar fermentation stimulation protein A
D SO_1229 torT; periplasmic component of the TorRS TMAO sensory system TorT K11930 torT; periplasmic protein TorT
D SO_1237 CBS domain containing protein K04767 acuB; acetoin utilization protein AcuB
D SO_1520 lldE; L-lactate dehydrogenase complex protein LldE K18928 lldE; L-lactate dehydrogenase complex protein LldE
D SO_1519 lldF; L-lactate dehydrogenase iron-sulfur cluster-binding protein LldF K18929 lldF; L-lactate dehydrogenase complex protein LldF
D SO_1518 lldG; L-lactate dehydrogenase complex protein LldG K00782 lldG; L-lactate dehydrogenase complex protein LldG
C 99982 Energy metabolism
D SO_4503 formate dehydrogenase assembly/maturation protein K02379 fdhD; FdhD protein
D SO_0107 fdhD; formate dehydrogenase assembly/maturation protein FdhD K02379 fdhD; FdhD protein
D SO_2269 fdx; ferredoxin 2Fe-2S type ISC system Fdx K04755 fdx; ferredoxin, 2Fe-2S
D SO_2417 yfaE; ferredoxin cofactor maintenance protein YfaE K11107 yfaE; ferredoxin
D SO_2512 rnfG; ion (H+ or Na+)-translocating NADH:ferredoxin oxidoreductase subunit RnfG K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G
D SO_2513 rnfE; ion (H+ or Na+)-translocating NADH:ferredoxin oxidoreductase subunit RnfE K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E
D SO_2508 rnfA; ion (H+ or Na+)-translocating NADH:ferredoxin oxidoreductase subunit RnfA K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A
D SO_0001 mioC; flavodoxin protein MioC K06205 mioC; MioC protein
D SO_2265 iscU; FeS cluster assembly scaffold protein IscU K04488 iscU; nitrogen fixation protein NifU and related proteins
D SO_0849 napD; periplasmic nitrate reductase chaperone NapD K02570 napD; periplasmic nitrate reductase NapD
D SO_1663 napF; nitrate reductase (NapA) maturase NapF K02572 napF; ferredoxin-type protein NapF
D SO_1234 torE; transmembrane component of the trimethylamine N-oxide reductase system TorE K02571 napE; periplasmic nitrate reductase NapE
D SO_0482 sirG; cytochrome c maturation system haem lyase subunit SirG K04018 nrfG; formate-dependent nitrite reductase complex subunit NrfG
D SO_2330 fldA; flavodoxin FldA K03839 fldA; flavodoxin I
D SO_0847 napG; periplasmic nitrate reductase ferredoxin component NapG K02573 napG; ferredoxin-type protein NapG
D SO_0846 napH; quinol dehydrogenase ferredoxin subunit NapH K02574 napH; ferredoxin-type protein NapH
D SO_3145 etfB; electron transfer flavoprotein beta subunit EtfB K03521 fixA; electron transfer flavoprotein beta subunit
D SO_0483 sirC; 4Fe-4S ferredoxin SirC K04014 nrfC; protein NrfC
D SO_4568 nrfD; nitrite reductase quinol dehydrogenase component NrfD K04015 nrfD; protein NrfD
D SO_0484 sirD; menaquinol oxidase SirD K04015 nrfD; protein NrfD
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D SO_2899 cysZ; putative sulfate transporter CysZ K06203 cysZ; CysZ protein
D SO_2155 glyoxalase family protein K08234 yaeR; glyoxylase I family protein
D SO_3352 yggS; PLP-dependent amino acid racemase YggS K06997 yggS; PLP dependent protein
D SO_2850 acteyltransferase GNAT family K22479 argA; N-acetyltransferase
C 99986 Glycan metabolism
D SO_2400 membrane protein of unknown function DUF1049 K08992 lapA; lipopolysaccharide assembly protein A
D SO_2399 yciM; predicted N-acetylglucosaminyl transferase YciM K19804 lapB; lipopolysaccharide assembly protein B
C 99987 Cofactor metabolism
D SO_4316 hemY; protoheme synthesis protein HemY K02498 hemY; HemY protein
D SO_4201 ubiB; 2-polyprenylphenol 6-hydroxylase UbiB K03688 ubiB; ubiquinone biosynthesis protein
D SO_4200 yigP; protein of unknown function DUF1243 YigP K03690 ubiJ; ubiquinone biosynthesis accessory factor UbiJ
D SO_4329 protein of unknown function DUF526 K09806 ubiK; ubiquinone biosynthesis accessory factor UbiK
D SO_1250 SCP-2 sterol transfer family protein K24843 ubiT; O2-independent ubiquinone biosynthesis accessory factor UbiT
D SO_0160 aminobenzoyl-glutamate transporter AbgT family K12942 abgT; aminobenzoyl-glutamate transport protein
C 99988 Secondary metabolism
C 99999 Others
D SO_3319 membrane protein DoxX family K15977 K15977; putative oxidoreductase
D SO_1999 phospholipase/carboxylesterase family protein K06999 K06999; phospholipase/carboxylesterase
D SO_2116 yfiQ; acetyl-CoA synthetase acetylase YfiQ K09181 yfiQ; acetyltransferase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D SO_2787 cspA; cold shock protein CspA K03704 cspA; cold shock protein
D SO_1648 cold shock protein Csp family K03704 cspA; cold shock protein
D SO_2628 cspD; DNA-binding cold shock protein CspD K03704 cspA; cold shock protein
D SO_0433 rsd; regulator of sigma D Rsd K07740 rsd; regulator of sigma D
D SO_0761 glnK; regulatory protein for nitrogen assimilation GlnK K04752 glnK; nitrogen regulatory protein P-II 2
D SO_3819 glnK; regulatory protein for nitrogen assimilation GlnK K04752 glnK; nitrogen regulatory protein P-II 2
D SO_4629 tex; transcriptional accessory protein Tex K06959 tex; protein Tex
C 99974 Translation
D SO_0541 RNA-metabolizing metallo-beta-lactamase family protein K07576 K07576; metallo-beta-lactamase family protein
C 99975 Protein processing
D SO_0923 lipoprotein of unknown function DUF306 K03668 hslJ; heat shock protein HslJ
D SO_2627 clpS; ATP-dependent Clp protease adaptor protein ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D SO_1793 tig; trigger factor peptidyl-prolyl cis-trans isomerase Tig K03545 tig; trigger factor
D SO_2043 yedZ; oxidoreductase cytochrome b subunit YedZ K17247 msrQ; methionine sulfoxide reductase heme-binding subunit
D SO_0104 fdhE; nitrate-inducible formate dehydrogenase chaperone FdhE K02380 fdhE; FdhE protein
D SO_4304 hupE; nickel uptake transporter HupE K03192 ureJ; urease accessory protein
D SO_1473 smpB; SsrA-binding protein SmpB K03664 smpB; SsrA-binding protein
D SO_2092 hypC; NiFe hydrogenase assembly chaperone HypC K04653 hypC; hydrogenase expression/formation protein HypC
D SO_2091 hypD; NiFe hydrogenase expression/formation protein HypD K04654 hypD; hydrogenase expression/formation protein HypD
D SO_2090 hypE; NiFe hydrogenase accessory/formation protein HypE K04655 hypE; hydrogenase expression/formation protein HypE
D SO_2094 hypF; NiFe hydrogenase maturation protein HypF K04656 hypF; hydrogenase maturation protein HypF
D SO_0349 yifB; ATP-dependent serine peptidase S16 family YifB K07391 comM; magnesium chelatase family protein
D SO_3563 2OG-Fe(II) oxygenase family protein K07394 K07394; SM-20-related protein
D SO_3475 disulfide bond formation facilitator K07396 K07396; putative protein-disulfide isomerase
D SO_4619 nfuA; iron-sulfur cluster biogenesis scaffold protein NfuA K07400 nfuA; Fe/S biogenesis protein NfuA
D SO_3051 xanthine and CO dehydrogenase family maturation factor XdhC/CoxF family K07402 xdhC; xanthine dehydrogenase accessory factor
C 99976 Replication and repair
D SO_2532 adaA; O-6-methylguanine-DNA-alkyltransferase AdaA K07443 ybaZ; methylated-DNA-protein-cysteine methyltransferase related protein
D SO_1549 xni; exodeoxyribonuclease III associated protein Xni K01146 xni; protein Xni
D SO_4248 yicR; protein of unknown function DUF2466 YicR K03630 radC; DNA repair protein RadC
D SO_1455 yfjY; protein of unknown function DUF2466 YfjY K03630 radC; DNA repair protein RadC
D SO_2041 rmuC; DNA recombination protein RmuC K09760 rmuC; DNA recombination protein RmuC
D SO_0299 predicted endonuclease distantly related to archael Holliday junction resolvase TIGR00252 family K07460 yraN; putative endonuclease
D SO_0145 endo/excinuclease domain protein K07461 K07461; putative endonuclease
D SO_0034 dprA; DNA processing protein DprA K04096 smf; DNA processing protein
D SO_2308 AAA ATPase family protein K07478 ycaJ; putative ATPase
D SO_0036 yrdD; putative DNA topoisomerase YrdD K07479 yrdD; putative DNA topoisomerase
D SO_3945 tnpA; ISSod14 transposase TnpA_ISSod14 K07486 K07486; transposase
D SO_4548 tnpA; ISSod14 transposase TnpA_ISSod14 K07486 K07486; transposase
D SO_4785 tnpA; ISSod23 transposase TnpA_ISSod23 K07491 rayT; REP-associated tyrosine transposase
D SO_0966 tnpA; ISSod2 transposase TnpA_ISSod2 K07497 K07497; putative transposase
D SO_4268 tnpA; ISSod2 transposase TnpA_ISSod2 K07497 K07497; putative transposase
D SO_2161 tnpA; ISSod2 transposase TnpA_ISSod2 K07497 K07497; putative transposase
D SO_2029 tnpA; ISSod2 transposase TnpA_ISSod2 K07497 K07497; putative transposase
D SO_A0025 tnpA_ISSod1; ISSod1 transposase TnpA_ISSod1 K07497 K07497; putative transposase
D SO_A0063 tnpA_ISSod8; ISSod8 transposase TnpA_ISSod8 K07498 K07498; putative transposase
D SO_A0085 tnpA_ISSod8; ISSod8 transposase TnpA_ISSod8 K07498 K07498; putative transposase
D SO_A0105 tnpA_ISSod8; ISSod8 transposase TnpA_ISSod8 K07498 K07498; putative transposase
C 99979 Viral proteins
C 99998 Others
D SO_1807 pspA; PspF antagonist PspA K03969 pspA; phage shock protein A
D SO_3105 periplasmic rhodanese domain protein K03972 pspE; phage shock protein E
D SO_4394 cytoplasmic rhodanese domain protein K03972 pspE; phage shock protein E
D SO_2014 ybaB; DNA-binding protein YbaB K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D SO_1924 RND superfamily efflux pump permease component 2 K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
D SO_1923 RND superfamily efflux pump permease component 1 K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
D SO_1277 proton:oligopeptide symporter POT family K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D SO_0002 glutathione uptake transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D SO_3195 proton:peptide symporter POT family K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D SO_3771 inorganic phosphate transporter PiT family K03306 TC.PIT; inorganic phosphate transporter, PiT family
D SO_4339 sodium-dependent hypotaurine transporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D SO_0858 glyP; Na(+)-linked D-alanine glycine transporter GlyP K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D SO_3541 alanine/glycine:cation symporter (AGCS) family protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D SO_3063 cation:alanine/glycine transporter AGCS family K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D SO_0949 brnQ; branched-chain amino acid: cation symporter BrnQ K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family
D SO_4519 sodium-dependent transporter BASS family K03453 TC.BASS; bile acid:Na+ symporter, BASS family
D SO_3706 nupX; nucleoside:proton symporter NupX K03317 TC.CNT; concentrative nucleoside transporter, CNT family
D SO_1214 Na+ dependent nucleoside transporter NupC family K03317 TC.CNT; concentrative nucleoside transporter, CNT family
D SO_0093 Na+ dependent nucleoside transporter NupC family K03317 TC.CNT; concentrative nucleoside transporter, CNT family
D SO_2143 aspartate-alanine antiporter K07085 K07085; putative transport protein
C 99978 Cell growth
D SO_3035 ispZ; intracellular septation protein IspZ K06190 ispZ; intracellular septation protein
D SO_4302 dnrN; repair of iron centers (RIC) protein DnrN K07322 ytfE; regulator of cell morphogenesis and NO signaling
D SO_0048 predicted non-catalytic member of peptidase subfamily M23B K22719 envC; murein hydrolase activator
C 99993 Cell motility
D SO_1060 TIGR02722 family lipoprotein K07337 K07337; penicillin-binding protein activator
D SO_1609 syd; SecY binding protein Syd K15723 syd; SecY interacting protein Syd
C 99995 Signaling proteins
D SO_0422 ampE; AmpD signaling modulator AmpE K03807 ampE; AmpE protein
D SO_2602 proQ; activator protein ProQ K03607 proQ; ProP effector
D SO_3681 universal stress protein family K06149 uspA; universal stress protein A
D SO_2355 uspE; universal stress protein UspE K14055 uspE; universal stress protein E
D SO_4408 bipA; GTP-binding protein BipA K06207 typA; GTP-binding protein
D SO_1985 chrR; anti-ECFsigma factor ChrR K07167 chrR; putative transcriptional regulator
D SO_0805 CBS domain containing protein K07168 K07168; CBS domain-containing membrane protein
D SO_1180 ybeZ; putative ATP-binding protein YbeZ K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D SO_0576 predicted ATPase PhoH family K07175 phoH2; PhoH-like ATPase
D SO_2882 prkA; serine protein kinase PrkA K07180 prkA; serine protein kinase
D SO_2856 putative nucleotidyltransferase DUF294 K07182 K07182; CBS domain-containing protein
D SO_3772 SH3 domain protein K07184 ygiM; SH3 domain protein
D SO_1222 SMP-2 superfamily membrane protein K07186 smp; membrane protein
D SO_3815 yajQ; protein of unknown function DUF520 YajQ K09767 yajQ; cyclic-di-GMP-binding protein
C 99992 Structural proteins
D SO_2307 lolA; outer membrane lipoprotein carrier protein LolA K03634 lolA; outer membrane lipoprotein carrier protein
D SO_3835 lolB; outer membrane lipoprotein LolB K02494 lolB; outer membrane lipoprotein LolB
D SO_3197 mlaA; phospholipid transport-associated protein MlaA K04754 mlaA; phospholipid-binding lipoprotein MlaA
D SO_2622 outer membrane protein SlyB-like protein K06077 slyB; outer membrane lipoprotein SlyB
D SO_1638 skp; periplasmic chaperone for outer membrane proteins Skp K06142 hlpA; outer membrane protein
D SO_3433 nlpD; lipoprotein NlpD K06194 nlpD; lipoprotein NlpD
D SO_1210 nlpI; globular tetratricopeptide repeat containing lipoprotein NlpI K05803 nlpI; lipoprotein NlpI
D SO_1673 ompW; outer membrane protein OmpW K07275 ompW; outer membrane protein
D SO_3931 outer membrane protein of unknown function DUF481 K07283 ydiY; putative salt-induced outer membrane protein
D SO_0934 outer membrane protein of unknown function DUF481 K07283 ydiY; putative salt-induced outer membrane protein
D SO_3811 family 16 outer membrane lipoprotein of unknown function K07286 yajG; uncharacterized lipoprotein
D SO_2566 asmA; outer membrane protein assembly protein AsmA K07289 asmA; AsmA protein
D SO_4089 ABC-type efflux system MFP component K01993 ABC-2.TX; HlyD family secretion protein
D SO_1705 ABC-type drugE1 family efflux system MFP component K01993 ABC-2.TX; HlyD family secretion protein
D SO_3694 ABC-type macrolide family export system MFP component K02005 ABC.CD.TX; HlyD family secretion protein
D SO_2920 tqsA; autoinducer-2 transport protein TqsA K11744 tqsA; AI-2 transport protein TqsA
D SO_4334 creD; membrane protein CreD K06143 creD; inner membrane protein
D SO_0259 ccmE; ABC-type heme export system chaperone component CcmE K02197 ccmE; cytochrome c-type biogenesis protein CcmE
D SO_0268 ccmH; cytochrome c synthetase subunit CcmH K02200 ccmH; cytochrome c-type biogenesis protein CcmH
D SO_0265 ccmI; apo-cytochrome c chaperone CcmI K02200 ccmH; cytochrome c-type biogenesis protein CcmH
D SO_0477 sirF; cytochrome c maturation system haem lyase subunit SirF K02200 ccmH; cytochrome c-type biogenesis protein CcmH
D SO_3313 rodZ; transmembrane cell shape protein RodZ K15539 rodZ; cytoskeleton protein RodZ
C 99994 Others
D SO_1726 phoU; transcriptional regulator of high affinity phosphate uptake system PhoU K02039 phoU; phosphate transport system protein
D SO_0583 bfd; bacterioferritin-associated ferredoxin Bfd K02192 bfd; bacterioferritin-associated ferredoxin
D SO_1051 opgD; periplasmic glucan biosynthesis protein OpgD K03670 mdoG; periplasmic glucans biosynthesis protein
D SO_2107 opgG; periplasmic glucan biosynthesis protein OpgG K03670 mdoG; periplasmic glucans biosynthesis protein
D SO_2731 mdoG; periplasmic glucan biosynthesis protein MdoG K03670 mdoG; periplasmic glucans biosynthesis protein
D SO_1747 tellurium ion resistance family protein K05794 terC; tellurite resistance protein TerC
D SO_4279 tellurium ion resistance family protein K05794 terC; tellurite resistance protein TerC
D SO_0697 cutA; divalent cation tolerance protein CutA K03926 cutA; periplasmic divalent cation tolerance protein
D SO_3640 apaG; protein of unknown function DUF525 ApaG K06195 apaG; ApaG protein
D SO_4311 cyaY; iron donor for FeS cluster assembly CyaY K06202 cyaY; iron-sulfur cluster assembly protein CyaY
D SO_3890 energy taxis-modulating methyl accepting sensory transducer with hemerythrin sensory domain K07216 hr; hemerythrin
D SO_0486 nosD; ABC-type copper transport system substrate-binding component NosD K07218 nosD; nitrous oxidase accessory protein
D SO_4502 molydopterin cofactor biosynthesis protein K07219 K07219; putative molybdopterin biosynthesis protein
D SO_3668 hmuX; heme iron utilization protein HmuX K07227 chuX; heme iron utilization protein
D SO_2805 nnrS; heme-copper-containing inner membrane protein NnrS K07234 K07234; uncharacterized protein involved in response to NO
D SO_0325 ychN; protein YchN K06039 ychN; uncharacterized protein involved in oxidation of intracellular sulfur
D SO_0485 nosL; ABC-type copper uptake system periplasmic chaperone component NosL K19342 nosL; copper chaperone NosL
B
B 09194 Poorly characterized
C 99996 General function prediction only
D SO_3065 cvpA; colicin V production protein CvpA K03558 cvpA; membrane protein required for colicin V production
D SO_2352 glycoside hydrolase family 73 K03796 bax; Bax protein
D SO_3701 glycoside hydrolase family 73 K03796 bax; Bax protein
D SO_0526 elaA; acteyltransferase GNAT family ElaA K02348 elaA; ElaA protein
D SO_2553 bon domain-containing protein K04065 osmY; hyperosmotically inducible periplasmic protein
D SO_1652 hydrolase PHP family K04477 ycdX; putative hydrolase
D SO_0039 globin K06886 glbN; hemoglobin
D SO_2836 patatin-like phospholipase K07001 K07001; NTE family protein
D SO_3155 phospholipase patatin family K07001 K07001; NTE family protein
D SO_0428 plpD; bifunctional outer membrane translocase / extracellular lipase PlpD K07001 K07001; NTE family protein
D SO_1304 erpA; iron-sulfur cluster assembly insertion protein ErpA K15724 erpA; iron-sulfur cluster insertion protein
D SO_A0010 membrane-bound metal-dependent hydrolase K07038 K07038; inner membrane protein
D SO_4401 rbn; tRNA-processing RNAse BN Rbn K07058 K07058; membrane protein
D SO_0698 fsxA; membrane protein FsxA K07113 fxsA; UPF0716 protein FxsA
D SO_3790 sufE; sulfur acceptor protein for iron-sulfur cluster assembly SufE K02426 sufE; cysteine desulfuration protein SufE
D SO_2290 rhodanese domain protein UPF0176 family K07146 K07146; UPF0176 protein
D SO_2634 hflD; high frequency lysogenization protein HflD K07153 hflD; high frequency lysogenization protein
D SO_3034 putB; ferric putrebactin reductase PutB K13255 fhuF; ferric iron reductase protein FhuF
D SO_4662 lemA protein K03744 lemA; LemA protein
D SO_1063 slyX; functionally uncharacterized protein SlyX K03745 slyX; SlyX protein
D SO_0035 smg; protein of unknown function DUF494 Smg K03747 smg; Smg protein
D SO_2190 creA; lipoprotein CreA K05805 creA; CreA protein
D SO_0834 sprT; protein of unknown function DUF335 SprT K02742 sprT; SprT protein
D SO_3066 dedD; cell divison protein DedD K03749 dedD; DedD protein
D SO_0288 damX; cell division protein DamX K03112 damX; DamX protein
D SO_4786 PqiA family protein K03808 pqiA; paraquat-inducible protein A
D SO_2605 PqiA family protein K03808 pqiA; paraquat-inducible protein A
D SO_1400 membrane protein of unknown function DUF368 K08974 K08974; putative membrane protein
D SO_3849 membrane-anchored protein of unknown function DUF304 K08981 K08981; putative membrane protein
D SO_0863 yjdF; membrane protein of unknown function DUF2238 YjdF K08984 yjdF; putative membrane protein
D SO_1811 ycjF; inner membrane protein of unknown function DUF697 YcjF K08990 ycjF; putative membrane protein
D SO_4588 membrane protein of unknown function DUF1145 K08993 yhhL; putative membrane protein
D SO_2497 SEC-C domain protein K09858 K09858; SEC-C motif domain protein
D SO_1675 predicted lipoprotein K09914 K09914; putative lipoprotein
D SO_3793 cupin 2 conserved barrel domain-containing protein K11312 K11312; cupin 2 domain-containing protein
D SO_2806 phospahte starvation inducible E-like protein K13256 psiE; protein PsiE
D SO_1581 PhnA domain protein K06193 phnA; protein PhnA
C 99997 Function unknown
D SO_1810 ycjX; protein of unknown function DUF463 YcjX K06918 K06918; uncharacterized protein
D SO_3596 protein of unknown function DUF1289 K06938 K06938; uncharacterized protein
D SO_1739 protein of unknown function DUF1289 K06938 K06938; uncharacterized protein
D SO_2792 protein of unknown function DUF1289 K06938 K06938; uncharacterized protein
D SO_0044 protein of unknown function UPF0153 K06940 K06940; uncharacterized protein
D SO_4354 protein of unknown function UPF0153 K06940 K06940; uncharacterized protein
D SO_3381 amine oxidase K06954 K06954; uncharacterized protein
D SO_0079 acetyltransferase K06975 K06975; uncharacterized protein
D SO_3985 dapA; dihydrodipicolinate synthase DapA K06987 K06987; uncharacterized protein
D SO_1583 succinylglutamate desuccinylase/aspartoacylase family protein K06987 K06987; uncharacterized protein
D SO_3501 protein of unknown function DUF861 K06995 K06995; uncharacterized protein
D SO_4600 glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein K06996 K06996; uncharacterized protein
D SO_1756 glyoxalase family protein K06996 K06996; uncharacterized protein
D SO_2793 glyoxalase family protein K06996 K06996; uncharacterized protein
D SO_2795 glyoxalase family protein K06996 K06996; uncharacterized protein
D SO_3900 enzyme of unknown function UPF0227 K07000 K07000; uncharacterized protein
D SO_2251 enzyme of unknown function UPF0227 K07000 K07000; uncharacterized protein
D SO_2594 MMPL family efflux pump K07003 K07003; uncharacterized protein
D SO_1844 exeS; extracellular nuclease ExeS K07004 K07004; uncharacterized protein
D SO_1066 exeM; extracellular endonuclease ExeM K07004 K07004; uncharacterized protein
D SO_2175 yejM; putative sulftase with DUF3413 domain YejM K07014 K07014; uncharacterized protein
D SO_3025 periplasmic siderophore cleavage esterase IroE family K07017 K07017; uncharacterized protein
D SO_0880 yheT; peptidase S33 family YheT K07019 K07019; uncharacterized protein
D SO_1534 alpha/beta-hydrolase superfamily protein K07020 K07020; uncharacterized protein
D SO_3588 yaaH; membrane protein associated with acetate transport YaaH K07034 K07034; uncharacterized protein
D SO_0463 neutral zinc metallopeptidase family protein K07054 K07054; uncharacterized protein
D SO_0886 putative metal-binding protein of unknown function DUF2387 K07070 K07070; uncharacterized protein
D SO_2922 yfcH; predicted nucleoside-diphosphate sugar epimerase YfcH K07071 K07071; uncharacterized protein
D SO_A0017 ISSod9 nucleotidyltransferase domain protein K07075 K07075; uncharacterized protein
D SO_A0168 ISSod9 toxin-antitoxin system antidote Mnt family K07075 K07075; uncharacterized protein
D SO_0456 alpha-ketoglutarate uptake system substrate-binding component K07080 K07080; uncharacterized protein
D SO_3758 sodium-dependent bicarbonate transporter (SBT) family K07086 K07086; uncharacterized protein
D SO_0503 arsP; permease of unknown function DUF318 ArsP K07089 K07089; uncharacterized protein
D SO_0535 permease of unknown function DUF318 K07089 K07089; uncharacterized protein
D SO_0444 zinc/cadmium-responsive efflux pump K07089 K07089; uncharacterized protein
D SO_1818 4-toluene sulfonate uptake permease family protein K07090 K07090; uncharacterized protein
D SO_2846 yfcA; glycine uptake transporter YfcA K07090 K07090; uncharacterized protein
D SO_1884 4-toluene sulfonate uptake permease family protein K07090 K07090; uncharacterized protein
D SO_4058 4-toluene sulfonate uptake permease family protein K07090 K07090; uncharacterized protein
D SO_1333 4-toluene sulfonate uptake permease family protein K07090 K07090; uncharacterized protein
D SO_2385 phoX; monomeric alkaline phosphatase PhoX K07093 K07093; uncharacterized protein
D SO_0807 predicted phosphoribosyltransferase K07101 K07101; uncharacterized protein
D SO_0108 yedE; membrane protein of unknown function DUF395 YedE K07112 K07112; uncharacterized protein
D SO_0768 NAD dependent epimerase/dehydratase family protein K07118 K07118; uncharacterized protein
D SO_0300 lppC; outer membrane lipoprotein LppC K07121 K07121; uncharacterized protein
D SO_0309 membrane protein MAPEG superfamily K07136 K07136; uncharacterized protein
D SO_1326 yhcC; radical SAM superfamily protein YhcC K07139 K07139; uncharacterized protein
D SO_1396 membrane protein of unknown function DUF418 K07148 K07148; uncharacterized protein
D SO_1987 ATP-dependent protease La (LON) domain protein K07157 K07157; uncharacterized protein
D SO_0005 yidD; membrane insertion associated protein YidD K08998 K08998; uncharacterized protein
D SO_1287 transamidase with YqeY domain K09117 K09117; uncharacterized protein
D SO_3356 yggU; protein of unknown function DUF167 YggU K09131 K09131; uncharacterized protein
D SO_1163 ybeD; protein lipolyation system protein YbeD K09158 K09158; uncharacterized protein
D SO_2573 ycgN; UCP006173 family protein K09160 K09160; uncharacterized protein
D SO_3380 protein of unknown function DUF1365 K09701 K09701; uncharacterized protein
D SO_0799 protein of unknown function DUF985 K09705 K09705; uncharacterized protein
D SO_2239 uncharacterized protein K09707 K09707; uncharacterized protein
D SO_0135 lipoprotein of unknown function DUF333 K09712 K09712; uncharacterized protein
D SO_0826 protein of unknown function DUF342 K09749 K09749; uncharacterized protein
D SO_2894 yaiI; protein of unknown function DUF188 YaiI K09768 K09768; uncharacterized protein
D SO_3036 yciL; protein of unknown function YciL K09780 K09780; uncharacterized protein
D SO_1151 membrane protein of unknown function DUF808 K09781 K09781; uncharacterized protein
D SO_2883 protein of unknown function DUF444 K09786 K09786; uncharacterized protein
D SO_2011 protein of unknown function DUF454 K09790 K09790; uncharacterized protein
D SO_2800 ycaR; UPF0434 family protein of unknown function YcaR K09791 K09791; uncharacterized protein
D SO_2357 Cbb3-type cytochrome oxidase assembly protein disulfide bond oxidoreductase DsbD family K09792 K09792; uncharacterized protein
D SO_4134 protein of unknown function DUF465 K09794 K09794; uncharacterized protein
D SO_3280 protein of unknown function DUF465 K09794 K09794; uncharacterized protein
D SO_3101 putative outer membrane protein of unknown function DUF541 K09797 K09797; uncharacterized protein
D SO_0046 yibQ; protein YibQ K09798 K09798; uncharacterized protein
D SO_1475 yfjF; UPF0125 family protein YfjF K09801 K09801; uncharacterized protein
D SO_4070 yggE; periplasmic protein associated with oxidative stress YggE K09807 K09807; uncharacterized protein
D SO_1110 protein of unknown function DUF539 K05952 K05952; uncharacterized protein
D SO_1868 yitL; nucleic acid binding superfamily protein YitL type K00243 K00243; uncharacterized protein
D SO_1061 lipoprotein with a tetratricopeptide repeat K09859 K09859; uncharacterized protein
D SO_3540 protein of unknown function DUF328 K09861 K09861; uncharacterized protein
D SO_0411 yacG; putative zinc-binding protein of unknown function DUF329 YacG K09862 K09862; uncharacterized protein
D SO_3458 protein of unknown function DUF416 K09891 K09891; uncharacterized protein
D SO_4728 yihI; GAP-like protein YihI K09894 K09894; uncharacterized protein
D SO_0776 YecA family protein K09895 K09895; uncharacterized protein
D SO_2201 protein of unknown function DUF413 K09897 K09897; uncharacterized protein
D SO_0879 protein of unknown function UPF0270 K09898 K09898; uncharacterized protein
D SO_2914 protein of unknown function DUF412 K09899 K09899; uncharacterized protein
D SO_2575 ycgL; protein of unknown function DUF709 YcgL K09902 K09902; uncharacterized protein
D SO_2176 yejL; protein of unknown function DUF1414 YejL K09904 K09904; uncharacterized protein
D SO_2182 yecM; protein of unknown function YecM K09907 K09907; uncharacterized protein
D SO_3571 periplasmic protein of unknown function DUF2057 K09909 K09909; uncharacterized protein
D SO_1816 periplasmic protein of unknown function DUF2057 K09909 K09909; uncharacterized protein
D SO_3983 protein of unknown function UPF0231 K09910 K09910; uncharacterized protein
D SO_2396 protein of unknown function DUF2058 K09912 K09912; uncharacterized protein
D SO_1867 yceH; protein of unknown function DUF480 YceH K09915 K09915; uncharacterized protein
D SO_2422 protein of unknown function DUF1315 K09916 K09916; uncharacterized protein
D SO_2604 yebG; UV induced SOS regulon protein YebG K09918 K09918; uncharacterized protein
D SO_1953 protein of unknown function DUF482 K09919 K09919; uncharacterized protein
D SO_3902 protein of unknown function DUF1249 K09920 K09920; uncharacterized protein
D SO_4307 protein of unknown function DUF484 K09921 K09921; uncharacterized protein
D SO_1373 inner membrane protein of unknown function DUF486 K09922 K09922; uncharacterized protein
D SO_3366 yggL; protein of unknown function DUF469 YggL K09923 K09923; uncharacterized protein
D SO_0898 protein of unknown function UPF0167 K09925 K09925; uncharacterized protein
D SO_2360 ccoH; Cbb3-type cytochrome oxidase assembly protein CcoH K09926 K09926; uncharacterized protein
D SO_4332 ycaQ; protein of unknown function DUF1006 YcaQ K09927 K09927; uncharacterized protein
D SO_2804 membrane protein of unknown function DUF2062 K09928 K09928; uncharacterized protein
D SO_2009 protein of unknown function DUF2063 K09929 K09929; uncharacterized protein
D SO_2008 protein of unknown function DUF692 K09930 K09930; uncharacterized protein
D SO_3938 yjeT; inner membrane protein of unknown function DUF2065 YjeT K09937 K09937; uncharacterized protein
D SO_2878 putative periplasmic protein of unknown function DUF2066 K09938 K09938; uncharacterized protein
D SO_1188 inner membrane protein with PepSY TM helix K09939 K09939; uncharacterized protein
D SO_4455 COG3296 family membrane protein K09940 K09940; uncharacterized protein
D SO_1715 protein of unknown function DUF1415 K09941 K09941; uncharacterized protein
D SO_3888 protein of unknown function DUF1508 K09946 K09946; uncharacterized protein
D SO_3621 periplasmic protein of unknown function DUF3299 K09950 K09950; uncharacterized protein
D SO_3326 uncharacterized protein K09954 K09954; uncharacterized protein
D SO_1672 protein of unknown function DUF925 K09962 K09962; uncharacterized protein
D SO_0557 gumN; protein GumN K09973 K09973; uncharacterized protein
D SO_3164 hutD; putative histidine degradation protein HutD K09975 K09975; uncharacterized protein
D SO_2062 putative periplasmic protein of unknown function DUF1318 K09978 K09978; uncharacterized protein
D SO_3764 protein of unknown function DUF2170 K09980 K09980; uncharacterized protein
D SO_4492 protein of unknown function DUF1993 K09983 K09983; uncharacterized protein
D SO_2642 protein of unknown function DUF1285 K09986 K09986; uncharacterized protein
D SO_3770 phosphate transport accessory protein of unknown function DUF47 K07220 K07220; uncharacterized protein
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: May 18, 2024