+F Repair protein KO #

  DNA Repair and Recombination Proteins - Streptococcus pyogenes MGAS315 (serotype M3)

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D SpyM3_1159 phr; putative deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E SpyM3_0621 ung; putative uracil DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E SpyM3_1584 mutY; putative A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E SpyM3_0642 nth; putative endonuclease III (DNA repair) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D SpyM3_0649 mutX; putative dGTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SpyM3_1164 mutT; putative MutT/nudix family mutator protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SpyM3_0166 dut; putative dUTPase, phage-associated K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D SpyM3_1159 phr; putative deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E SpyM3_0621 ung; putative uracil DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E SpyM3_1584 mutY; putative A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E SpyM3_1802 tag; putative 3-methyl-adenine DNA glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E SpyM3_0347 fpg; putative formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E SpyM3_0642 nth; putative endonuclease III (DNA repair) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E SpyM3_0296 exoA; putative 3'-exo-deoxyribonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E SpyM3_0639 recJ; putative single-strand DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E SpyM3_0491 lig; putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E SpyM3_0145 polA.1; DNA-directed DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E SpyM3_1577 uvrA; putative excinuclease ABC (subunit A) K03701 uvrA; excinuclease ABC subunit A E SpyM3_0996 uvrB; putative excinuclease ABC (subunit B) K03702 uvrB; excinuclease ABC subunit B E SpyM3_0749 uvrC; putative excinuclease ABC (subunit C) K03703 uvrC; excinuclease ABC subunit C E SpyM3_0901 pcrA; putative ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SpyM3_0145 polA.1; DNA-directed DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E SpyM3_0491 lig; putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F SpyM3_0075 rpoB; putative DNA-dependent RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F SpyM3_0076 rpoC; putative DNA-dependent RNA polymerase beta prime subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F SpyM3_0066 rpoA; DNA-directed RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F SpyM3_1633 rpoE; putative DNA-directed RNA polymerase delta subunit K03048 rpoE; DNA-directed RNA polymerase subunit delta F SpyM3_1374 putative DNA-directed RNA polymerase omega chain K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F SpyM3_0006 trcF; putative transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E SpyM3_1806 mutS.2; putative DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS E SpyM3_1588 mutS.1; putative DNA mismatch repair protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E SpyM3_1805 mutL; putative DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E SpyM3_1156 xseA; putative exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E SpyM3_1155 xseB; putative exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E SpyM3_0914 dnaE; putative DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E SpyM3_1687 polC; putative DNA polymerase III alpha subunit K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E SpyM3_0002 dnaN; beta subunit of DNA polymerase III K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E SpyM3_1072 holA; DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E SpyM3_0290 putative DNA polymerase III delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E SpyM3_1608 dnaQ; putative DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E SpyM3_1038 dnaX; DNA polymerase III gamma/tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E SpyM3_0491 lig; putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E SpyM3_0901 pcrA; putative ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SpyM3_1581 ssb.2; putative single strand DNA binding protein K03111 ssb; single-strand DNA-binding protein E SpyM3_0093 ssb.1; single-stranded DNA-binding protein, phage-associated K03111 ssb; single-strand DNA-binding protein E SpyM3_1249 putative single-strand DNA-binding protein - phage-associated K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E SpyM3_1593 recD; putative exodeoxyribonuclease V alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E SpyM3_1800 recA; putative recombination protein K03553 recA; recombination protein RecA E SpyM3_1803 ruvA; putative Holiday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA E SpyM3_0032 ruvB; putative Holliday junction DNA helicase subunit B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E SpyM3_1373 priA; putative primosomal replication factor Y K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E SpyM3_1800 recA; putative recombination protein K03553 recA; recombination protein RecA E SpyM3_0167 radA; putative DNA repair protein K04485 radA; DNA repair protein RadA/Sms E SpyM3_1855 recF; RecF protein K03629 recF; DNA replication and repair protein RecF E SpyM3_1551 recG; putative ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E SpyM3_0639 recJ; putative single-strand DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E SpyM3_0016 conserved hypothetical protein K03584 recO; DNA repair protein RecO (recombination protein O) E SpyM3_1085 recR; recombination protein recR K06187 recR; recombination protein RecR E SpyM3_1151 recN; putative DNA repair and genetic recombination protein K03631 recN; DNA repair protein RecN (Recombination protein N) E SpyM3_1389 recU; putative recombination protein U K03700 recU; recombination protein U E SpyM3_1803 ruvA; putative Holiday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA E SpyM3_0032 ruvB; putative Holliday junction DNA helicase subunit B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D AddAB pathway proteins E SpyM3_0514 rexA; putative ATP-dependent exonuclease subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E SpyM3_0513 rexB; putative ATP-dependent exonuclease subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor E SpyM3_0678 conserved hypothetical protein K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E SpyM3_0349 conserved hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F SpyM3_0810 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F SpyM3_0476 gyrB; putative DNA gyrase, subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F SpyM3_0820 topA; putative DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F SpyM3_1146 putative histone-like DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F SpyM3_1134 recT; putative recombinase - phage-associated K07455 recT; recombination protein RecT F SpyM3_0639 recJ; putative single-strand DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F SpyM3_0016 conserved hypothetical protein K03584 recO; DNA repair protein RecO (recombination protein O) F SpyM3_1085 recR; recombination protein recR K06187 recR; recombination protein RecR F SpyM3_0491 lig; putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F SpyM3_1577 uvrA; putative excinuclease ABC (subunit A) K03701 uvrA; excinuclease ABC subunit A F SpyM3_0996 uvrB; putative excinuclease ABC (subunit B) K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D SpyM3_1595 dinP; putative DNA-damage-inducible protein P K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D SpyM3_1800 recA; putative recombination protein K03553 recA; recombination protein RecA D SpyM3_0977 putative repressor protein - phage-associated K01356 lexA; repressor LexA [EC:3.4.21.88] D SpyM3_0840 putative repressor protein K01356 lexA; repressor LexA [EC:3.4.21.88] D SpyM3_1151 recN; putative DNA repair and genetic recombination protein K03631 recN; DNA repair protein RecN (Recombination protein N) D SpyM3_1581 ssb.2; putative single strand DNA binding protein K03111 ssb; single-strand DNA-binding protein D SpyM3_0093 ssb.1; single-stranded DNA-binding protein, phage-associated K03111 ssb; single-strand DNA-binding protein D SpyM3_1249 putative single-strand DNA-binding protein - phage-associated K03111 ssb; single-strand DNA-binding protein D SpyM3_1355 conserved hypothetical protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D SpyM3_0459 dinG; putative ATP-dependent DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D SpyM3_0649 mutX; putative dGTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SpyM3_1164 mutT; putative MutT/nudix family mutator protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SpyM3_0166 dut; putative dUTPase, phage-associated K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D SpyM3_0303 nrdE.2; putative ribonucleoside-diphosphate reductase large chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D SpyM3_1049 nrdE.1; putative ribonucleoside-diphosphate reductase 2 alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D SpyM3_0301 nrdF.2; putative ribonucleotide reductase 2 K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D SpyM3_1050 nrdF.1; putative ribonucleoside-diphosphate reductase 2 beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D SpyM3_0470 conserved hypothetical protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024