+E Messenger RNA Biogenesis KO
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Messenger RNA Biogenesis - Sus scrofa (pig)
%
!
AEukaryotic type
B mRNA processing factors
C 5' end processing
D Capping factors
E 100621823 RNMT; LOW QUALITY PROTEIN: mRNA cap guanine-N7 methyltransferase K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]
E 100520874 RNGTT; mRNA-capping enzyme K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74]
E 100310797 CDK7; cyclin-dependent kinase 7 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 100154061 CMTR1; LOW QUALITY PROTEIN: cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 K14589 CMTR1; cap1 methyltransferase [EC:2.1.1.57]
E 100625187 CMTR2; cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2 K14590 CMTR2; cap2 methyltransferase [EC:2.1.1.296]
E 100524876 FAM103A1; RNMT-activating mini protein K18708 FAM103A1; RNMT-activating mini protein
D Cap binding complex
E 106509205 NCBP1; nuclear cap-binding protein subunit 1 K12882 NCBP1; nuclear cap-binding protein subunit 1
E 100156513 NCBP2; nuclear cap-binding protein subunit 2 K12883 NCBP2; nuclear cap-binding protein subunit 2
C 3' end processing
D Pre-mRNA cleavage factor Im (CFIm)
E 100625681 NUDT21; cleavage and polyadenylation specificity factor subunit 5 K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5
E 100152191 CPSF6; cleavage and polyadenylation specificity factor subunit 6 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
E 100519008 CPSF7; cleavage and polyadenylation specificity factor subunit 7 isoform X1 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7
D Pre-mRNA cleavage factor IIm (CFIIm)
E 100520541 CLP1; polyribonucleotide 5'-hydroxyl-kinase Clp1 K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
E 100515845 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 isoform X3 K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11
D Cleavage and polyadenylation specificity factor (CPSF) complex
E 100514403 CPSF1; LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 1 K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1
E 106507753 CPSF2; cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 100622181 CPSF3; cleavage and polyadenylation specificity factor subunit 3 isoform X1 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 100518830 CPSF4; cleavage and polyadenylation specificity factor subunit 4 isoform X2 K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4
E 100523128 FIP1L1; pre-mRNA 3'-end-processing factor FIP1 isoform X1 K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1
E 100517785 WDR33; pre-mRNA 3' end processing protein WDR33 isoform X1 K15542 PFS2; polyadenylation factor subunit 2
E 100522703 WDR82; WD repeat-containing protein 82 K14962 WDR82; COMPASS component SWD2
E 397378 PPP1CB; serine/threonine-protein phosphatase PP1-beta catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 733611 PPP1CA; serine/threonine-protein phosphatase PP1-alpha catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 733612 PPP1CC; serine/threonine-protein phosphatase PP1-gamma catalytic subunit K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16]
E 100525522 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
D Cleavage stimulation factor (CSTF) complex
E 100126292 CSTF1; cleavage stimulation factor subunit 1 K14406 CSTF1; cleavage stimulation factor subunit 1
E 100515986 CSTF2; cleavage stimulation factor subunit 2 isoform X2 K14407 CSTF2; cleavage stimulation factor subunit 2
E 100157243 CSTF2T; cleavage stimulation factor subunit 2 tau variant K14407 CSTF2; cleavage stimulation factor subunit 2
E 100622040 CSTF3; cleavage stimulation factor subunit 3 K14408 CSTF3; cleavage stimulation factor subunit 3
E 100512609 SYMPK; symplekin isoform X1 K06100 SYMPK; symplekin
D U7-dependent histone pre-mRNA processing factors
E 100153480 SNRPD3; small nuclear ribonucleoprotein Sm D3 K11088 SNRPD3; small nuclear ribonucleoprotein D3
E 100038330 SNRPE; small nuclear ribonucleoprotein E K11097 SNRPE; small nuclear ribonucleoprotein E
E 100155855 SNRPF; small nuclear ribonucleoprotein F K11098 SNRPF; small nuclear ribonucleoprotein F
E 100525867 SNRPG; small nuclear ribonucleoprotein G K11099 SNRPG; small nuclear ribonucleoprotein G
E 110261147 LSM10; U7 snRNA-associated Sm-like protein LSm10 isoform X1 K25591 LSM10; U7 snRNA-associated Sm-like protein LSm10
E 100522906 LSM11; LOW QUALITY PROTEIN: U7 snRNA-associated Sm-like protein LSm11 K25592 LSM11; U7 snRNA-associated Sm-like protein LSm11
E 106507753 CPSF2; cleavage and polyadenylation specificity factor subunit 2 K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2
E 100622181 CPSF3; cleavage and polyadenylation specificity factor subunit 3 isoform X1 K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
E 100515986 CSTF2; cleavage stimulation factor subunit 2 isoform X2 K14407 CSTF2; cleavage stimulation factor subunit 2
E 100157243 CSTF2T; cleavage stimulation factor subunit 2 tau variant K14407 CSTF2; cleavage stimulation factor subunit 2
E 100512609 SYMPK; symplekin isoform X1 K06100 SYMPK; symplekin
E 100513605 SLBP; histone RNA hairpin-binding protein K18710 SLBP; histone RNA hairpin-binding protein
E 100515533 LOW QUALITY PROTEIN: oocyte-specific histone RNA stem-loop-binding protein 2 K18710 SLBP; histone RNA hairpin-binding protein
E 100523759 CASP8AP2; CASP8-associated protein 2 isoform X1 K25593 CASP8AP2; CASP8-associated protein 2
D DRB sensitivity inducing factor (DSIF) complex
E 100515097 SUPT4H1; transcription elongation factor SPT4 K15171 SUPT4H1; transcription elongation factor SPT4
E 100623068 SUPT5H; LOW QUALITY PROTEIN: transcription elongation factor SPT5 K15172 SUPT5H; transcription elongation factor SPT5
D N6-methyltransferase complex
E 100513294 METTL3; N6-adenosine-methyltransferase 70 kDa subunit K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]
E 100525761 METTL14; N6-adenosine-methyltransferase subunit METTL14 K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit
E 110261174 METTL4; methyltransferase-like protein 4 isoform X1 K24174 METTL4; N(6)-adenine-specific DNA methyltransferase [EC:2.1.1.72]
E 100512985 METTL16; methyltransferase-like protein 16 isoform X1 K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346]
E 100157533 WTAP; pre-mRNA-splicing regulator WTAP isoform 1 K22824 WTAP; pre-mRNA-splicing regulator WTAP
E 100512408 KIAA1429; protein virilizer homolog isoform X1 K22910 VIRMA; protein virilizer
E 100155227 RBM15; putative RNA-binding protein 15 K13190 RBM15; RNA-binding protein 15
E 100519215 RBM15B; putative RNA-binding protein 15B K13190 RBM15; RNA-binding protein 15
E 100521395 ZC3H13; zinc finger CCCH domain-containing protein 13 isoform X1 K22909 ZC3H13; zinc finger CCCH domain-containing protein 13
E 100623482 CBLL1; E3 ubiquitin-protein ligase Hakai isoform X3 K15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27]
D Poly(A) addition factors
E 100523547 PAPOLG; poly(A) polymerase gamma isoform X1 K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 100156323 PAPOLA; poly(A) polymerase alpha isoform X4 K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 100511746 PAPOLB; poly(A) polymerase beta K14376 PAP; poly(A) polymerase [EC:2.7.7.19]
E 100512336 PAPD4; poly(A) RNA polymerase GLD2 isoform X1 K14079 PAPD4; poly(A) RNA polymerase GLD2 [EC:2.7.7.19]
E 100516127 TUT1; LOW QUALITY PROTEIN: speckle targeted PIP5K1A-regulated poly(A) polymerase K18709 TUT1; speckle targeted PIP5K1A-regulated poly(A) polymerase [EC:2.7.7.19 2.7.7.52]
D Negative regulators of mRNA 3' end processing
E 100511662 BARD1; BRCA1-associated RING domain protein 1 K10683 BARD1; BRCA1-associated RING domain protein 1
E 100153235 RBM26; RNA-binding protein 26 isoform X16 K13192 RBM26; RNA-binding protein 26
E 100127165 FTO; alpha-ketoglutarate-dependent dioxygenase FTO K19469 FTO; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 100622998 ALKBH5; RNA demethylase ALKBH5 K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53]
E 100739753 TARDBP; TAR DNA-binding protein 43 K23600 TARDBP; TAR DNA-binding protein 43
C Other processing factors
D 100519272 DHX40; probable ATP-dependent RNA helicase DHX40 isoform X1 K18711 DHX40; ATP-dependent RNA helicase DHX40 [EC:5.6.2.6]
D 110255716 KIN; DNA/RNA-binding protein KIN17 isoform X1 K13102 KIN; DNA/RNA-binding protein KIN17
D 100154157 METTL8; methyltransferase-like protein 8 isoform X2 K24975 METTL8; mRNA N(3)-methylcytidine methyltransferase METTL8 [EC:2.1.1.-]
D 100523174 METTL22; methyltransferase-like protein 22 K23040 METTL22; methyltransferase-like protein 22 [EC:2.1.1.-]
D 100156873 FAM46A; protein FAM46A isoform X1 K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 100511570 FAM46B; LOW QUALITY PROTEIN: protein FAM46B K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-]
D 100525341 FAM46C; protein FAM46C K23034 TENT5C; terminal nucleotidyltransferase 5C [EC:2.7.7.19]
D 100519527 FAM46D; protein FAM46D K23035 TENT5D; terminal nucleotidyltransferase 5D [EC:2.7.7.19]
D 100157303 ZC3H14; zinc finger CCCH domain-containing protein 14 isoform X4 K23038 ZC3H14; zinc finger CCCH domain-containing protein 14
D 100620890 SRRT; LOW QUALITY PROTEIN: serrate RNA effector molecule homolog K27103 SRRT; serrate RNA effector molecule
B mRNA surveillance and transport factors
C Transport factors
D EJC complex
E 100156173 RBM8A; RNA-binding protein 8A isoform X1 K12876 RBM8A; RNA-binding protein 8A
E 100518306 MAGOHB; protein mago nashi homolog 2 isoform X1 K12877 MAGOH; protein mago nashi
E 100519318 MAGOH; protein mago nashi homolog K12877 MAGOH; protein mago nashi
E 100620496 ALYREF; THO complex subunit 4 isoform X1 K12881 THOC4; THO complex subunit 4
E 448813 DDX39B; spliceosome RNA helicase DDX39B K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
E 100101926 EIF4A3; eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 100689257 CCDC174; coiled-coil domain-containing protein 174 K25178 CCDC174; coiled-coil domain-containing protein 174
E 100525426 CASC3; LOW QUALITY PROTEIN: protein CASC3 K14323 CASC3; protein CASC3
E 100623258 SAP18; histone deacetylase complex subunit SAP18 K14324 SAP18; histone deacetylase complex subunit SAP18
E 100526149 PNN; pinin K13114 PNN; pinin
E 100156353 ACIN1; apoptotic chromatin condensation inducer in the nucleus isoform X6 K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus
E 100737559 RNPS1; RNA-binding protein with serine-rich domain 1 isoform X1 K14325 RNPS1; RNA-binding protein with serine-rich domain 1
E 100521629 SRRM1; serine/arginine repetitive matrix protein 1 isoform X1 K13171 SRRM1; serine/arginine repetitive matrix protein 1
D TREX complex
E 100625217 THOC1; THO complex subunit 1 isoform X1 K12878 THOC1; THO complex subunit 1
E 100154832 THOC2; THO complex subunit 2 isoform X1 K12879 THOC2; THO complex subunit 2
E 100524425 THOC3; THO complex subunit 3 K12880 THOC3; THO complex subunit 3
E 100620496 ALYREF; THO complex subunit 4 isoform X1 K12881 THOC4; THO complex subunit 4
E 100626533 THOC6; THO complex subunit 6 homolog K13175 THOC6; THO complex subunit 6
E 100519334 THOC7; THO complex subunit 7 homolog isoform X2 K13176 THOC7; THO complex subunit 7
D TREX-2 complex
E 100518091 PCID2; PCI domain-containing protein 2 isoform X1 K23801 PCID2; nuclear mRNA export protein PCID2/THP1
E 100155621 SEM1; 26S proteasome complex subunit SEM1 K10881 SHFM1; 26 proteasome complex subunit DSS1
E 100153859 ENY2; transcription and mRNA export factor ENY2 isoform 1 K11368 ENY2; enhancer of yellow 2 transcription factor
E 606742 CETN2; centrin-2 K10840 CETN2; centrin-2
E 574052 CETN3; centrin-3 K16466 CETN3; centrin-3
E 100738659 MCM3AP; germinal-center associated nuclear protein isoform X1 K24317 MCM3AP; germinal-center associated nuclear protein [EC:2.3.1.48]
D Nuclear pore complex
E 100520507 TPR; nucleoprotein TPR isoform X2 K09291 TPR; nucleoprotein TPR
E 100125839 RAE1; mRNA export factor K14298 RAE1; mRNA export factor
E 100739864 SEC13; protein SEC13 homolog K14004 SEC13; protein transport protein SEC13
E 100626170 NUP37; nucleoporin Nup37 K14302 NUP37; nuclear pore complex protein Nup37
E 100526070 NUP85; nuclear pore complex protein Nup85 isoform X1 K14304 NUP85; nuclear pore complex protein Nup85
E 100154567 NUP43; nucleoporin Nup43 isoform X2 K14305 NUP43; nuclear pore complex protein Nup43
E 100519837 NUP50; nuclear pore complex protein Nup50 isoform X1 K14295 NUP50; nuclear pore complex protein Nup50
E 100512118 NUP54; nucleoporin p54 isoform X2 K14308 NUP54; nuclear pore complex protein Nup54
E 100523497 NUP62; nuclear pore glycoprotein p62 K14306 NUP62; nuclear pore complex protein Nup62
E 100517135 NUP62CL; nucleoporin-62 C-terminal-like protein isoform X2 K14306 NUP62; nuclear pore complex protein Nup62
E 414429 NUP88; nuclear pore complex protein Nup88 isoform X1 K14318 NUP88; nuclear pore complex protein Nup88
E 100626040 NUP93; nuclear pore complex protein Nup93 K14309 NUP93; nuclear pore complex protein Nup93
E 100522198 NUP98; LOW QUALITY PROTEIN: nuclear pore complex protein Nup98-Nup96 K14297 NUP98; nuclear pore complex protein Nup98-Nup96
E 100516909 NUP107; nuclear pore complex protein Nup107 isoform X1 K14301 NUP107; nuclear pore complex protein Nup107
E 100153047 NUP133; nuclear pore complex protein Nup133 isoform X1 K14300 NUP133; nuclear pore complex protein Nup133
E 100153500 NUP188; nucleoporin NUP188 homolog isoform X4 K14311 NUP188; nuclear pore complex protein Nup188
E 100153581 NUP153; nuclear pore complex protein Nup153 isoform X1 K14296 NUP153; nuclear pore complex protein Nup153
E 100517061 NUP155; nuclear pore complex protein Nup155 K14312 NUP155; nuclear pore complex protein Nup155
E 100513973 NUP160; nuclear pore complex protein Nup160 K14303 NUP160; nuclear pore complex protein Nup160
E 102166970 NUP35; nucleoporin NUP53 K14313 NUP35; nuclear pore complex protein Nup53
E 100523151 NUP205; nuclear pore complex protein Nup205 isoform X1 K14310 NUP205; nuclear pore complex protein Nup205
E 100515926 NUP210; nuclear pore membrane glycoprotein 210 K14314 NUP210; nuclear pore complex protein Nup210
E 100157113 NUP210L; nuclear pore membrane glycoprotein 210-like K14314 NUP210; nuclear pore complex protein Nup210
E 100155564 NUP214; nuclear pore complex protein Nup214 isoform X1 K14317 NUP214; nuclear pore complex protein Nup214
E 100512219 POM121C; LOW QUALITY PROTEIN: nuclear envelope pore membrane protein POM 121C K14316 POM121; nuclear pore complex protein Nup121
E 100628236 POM121L2; LOW QUALITY PROTEIN: POM121-like protein 2 K14316 POM121; nuclear pore complex protein Nup121
E 100621146 NUPL2; nucleoporin-like protein 2 isoform X1 K14321 NUPL2; nucleoporin-like protein 2
E 100621612 NDC1; nucleoporin NDC1 K14315 NDC1; nucleoporin NDC1
E 110261549 SEH1L; LOW QUALITY PROTEIN: nucleoporin SEH1 K14299 SEH1; nucleoporin SEH1
E 100511376 E3 SUMO-protein ligase RanBP2 isoform X3 K12172 RANBP2; E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-]
E 100738022 SENP2; sentrin-specific protease 2 isoform X1 K03345 SENP2; sentrin-specific protease 2 (axin associating molecule) [EC:3.4.22.68]
E 100154333 AAAS; aladin K14320 AAAS; aladin
E 574052 CETN3; centrin-3 K16466 CETN3; centrin-3
E 100519463 GLE1; nucleoporin GLE1 K18723 GLE1; nucleoporin GLE1
E 100153087 nuclear RNA export factor 2 K14284 NXF; nuclear RNA export factor
E 100628213 NXF1; nuclear RNA export factor 1 K14284 NXF; nuclear RNA export factor
E 102164431 nuclear RNA export factor 3-like K14284 NXF; nuclear RNA export factor
E 110257687 nuclear RNA export factor 3-like K14284 NXF; nuclear RNA export factor
E 100514739 NXT1; NTF2-related export protein 1 K14285 NXT1_2; NTF2-related export protein 1/2
E 100521422 NXT2; NTF2-related export protein 2 isoform X1 K14285 NXT1_2; NTF2-related export protein 1/2
E 102163379 NPAP1; nuclear pore-associated protein 1 K26564 NPAP1; nuclear pore-associated protein 1
D Ran-mediated transport factors
E 397655 RAN; GTP-binding nuclear protein Ran K07936 RAN; GTP-binding nuclear protein Ran
E 100155298 ANP32A; acidic leucine-rich nuclear phosphoprotein 32 family member A K18646 ANP32A_C_D; acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D
E 100152263 ANP32B; acidic leucine-rich nuclear phosphoprotein 32 family member B K18647 ANP32B; acidic leucine-rich nuclear phosphoprotein 32 family member B
E 100127162 TNFSF13; tumor necrosis factor ligand superfamily member 13 K05475 TNFSF13; tumor necrosis factor ligand superfamily member 13
E 100337681 ELAVL1; ELAV-like protein 1 K13088 ELAVL1; ELAV-like protein 1
E 100153303 ELAVL2; ELAV-like protein 2 isoform X1 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 100515074 ELAVL3; ELAV-like protein 3 isoform X2 K13208 ELAVL2_3_4; ELAV like protein 2/3/4
E 100523721 FAF2; FAS-associated factor 2 isoform X1 K18726 FAF2; FAS-associated factor 2
E 397524 VCP; transitional endoplasmic reticulum ATPase K13525 VCP; transitional endoplasmic reticulum ATPase
E 100738287 VCPKMT; protein-lysine methyltransferase METTL21D K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-]
E 100519078 TNPO2; transportin-2 isoform X3 K18727 TNPO2; transportin-2
E 397330 XPO1; exportin-1 isoform X3 K14290 XPO1; exportin-1
E 100153229 XPO7; exportin-7 isoform X1 K18460 XPO7; exportin-7
E 100526145 RANBP17; ran-binding protein 17 isoform X1 K24115 RANBP17; Ran-binding protein 17
E 100153811 RANGAP1; LOW QUALITY PROTEIN: ran GTPase-activating protein 1 K14319 RANGAP1; Ran GTPase-activating protein 1
E 100518332 TAF15; TATA-binding protein-associated factor 2N K14651 TAF15; transcription initiation factor TFIID subunit 15
D eIF4F and regulatory proteins
E 100101924 EIF4E2; eukaryotic translation initiation factor 4E type 2 K03259 EIF4E; translation initiation factor 4E
E 100038030 EIF4E; eukaryotic translation initiation factor 4E isoform X2 K03259 EIF4E; translation initiation factor 4E
E 100523233 EIF4E1B; eukaryotic translation initiation factor 4E type 1B isoform X2 K03259 EIF4E; translation initiation factor 4E
E 100101928 EIF4A2; eukaryotic initiation factor 4A-II K03257 EIF4A; translation initiation factor 4A
E 100101929 EIF4A1; eukaryotic initiation factor 4A-I K03257 EIF4A; translation initiation factor 4A
E 100520826 EIF4G2; eukaryotic translation initiation factor 4 gamma 2 K03260 EIF4G; translation initiation factor 4G
E 449528 EIF4G1; eukaryotic translation initiation factor 4 gamma 1 K03260 EIF4G; translation initiation factor 4G
E 100516495 EIF4G3; eukaryotic translation initiation factor 4 gamma 3 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 100627717 EIF4H; eukaryotic translation initiation factor 4H isoform 1 K24086 EIF4H; translation initiation factor 4H
E 100627508 EIF4EBP1; eukaryotic translation initiation factor 4E-binding protein 1 K07205 EIF4EBP1; eukaryotic translation initiation factor 4E binding protein 1
E 100523927 EIF4EBP2; eukaryotic translation initiation factor 4E-binding protein 2 K18644 EIF4EBP2; eukaryotic translation initiation factor 4E binding protein 2
E 100529254 EIF4EBP3; eukaryotic translation initiation factor 4E-binding protein 3 K18645 EIF4EBP3; eukaryotic translation initiation factor 4E binding protein 3
E 100152730 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter isoform X1 K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 100523200 ANGEL2; protein angel homolog 2 isoform X2 K18729 ANGEL; protein angel
E 100154390 ANGEL1; protein angel homolog 1 isoform X1 K18729 ANGEL; protein angel
E 100512131 FXR2; fragile X mental retardation syndrome-related protein 2 K15516 FMR; fragile X mental retardation protein
E 100525539 FXR1; fragile X mental retardation syndrome-related protein 1 isoform X4 K15516 FMR; fragile X mental retardation protein
E 100155078 FMR1; synaptic functional regulator FMR1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 100523290 CYFIP2; cytoplasmic FMR1-interacting protein 2 isoform X1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 100627463 CYFIP1; LOW QUALITY PROTEIN: cytoplasmic FMR1-interacting protein 1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 100524914 GEMIN5; gem-associated protein 5 isoform X1 K13133 GEMIN5; gem associated protein 5
E 100513802 TACC3; transforming acidic coiled-coil-containing protein 3 K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 100048944 CPEB1; cytoplasmic polyadenylation element-binding protein 1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 100152117 CPEB3; cytoplasmic polyadenylation element-binding protein 3 isoform X8 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 100462674 CPEB2; cytoplasmic polyadenylation element-binding protein 2 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 100521758 CPEB4; cytoplasmic polyadenylation element-binding protein 4 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 100515940 DDX3X; ATP-dependent RNA helicase DDX3X K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 100624590 ATP-dependent RNA helicase DDX3X isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 100155829 GIGYF2; GRB10-interacting GYF protein 2 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 100620395 GIGYF1; GRB10-interacting GYF protein 1 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 100153958 PABPC1; polyadenylate-binding protein 1 K13126 PABPC; polyadenylate-binding protein
E 100515840 PABPC4; polyadenylate-binding protein 4 isoform X5 K13126 PABPC; polyadenylate-binding protein
E 100151962 PABPC1L; polyadenylate-binding protein 1-like isoform X1 K13126 PABPC; polyadenylate-binding protein
E 100525442 polyadenylate-binding protein 1-like 2 K13126 PABPC; polyadenylate-binding protein
E 100627820 PABPC4L; LOW QUALITY PROTEIN: polyadenylate-binding protein 4-like K13126 PABPC; polyadenylate-binding protein
E 100623240 PABPC1L2A; polyadenylate-binding protein 1-like 2 K13126 PABPC; polyadenylate-binding protein
E 100518351 polyadenylate-binding protein 5 K13126 PABPC; polyadenylate-binding protein
E 100524591 PAIP1; polyadenylate-binding protein-interacting protein 1 isoform X2 K14322 PAIP1; polyadenylate-binding protein-interacting protein 1
E 100522309 PAIP2; polyadenylate-binding protein-interacting protein 2 K27470 PAIP2; polyadenylate-binding protein-interacting protein 2
E 100739314 PAIP2B; polyadenylate-binding protein-interacting protein 2B K27470 PAIP2; polyadenylate-binding protein-interacting protein 2
E 100124376 SKIV2L; helicase SKI2W K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 100512152 DEAF1; deformed epidermal autoregulatory factor 1 homolog isoform X1 K23041 DEAF1; deformed epidermal autoregulatory factor 1
E 100738684 malignant T-cell-amplified sequence 1 K07575 MCTS; malignant T-cell-amplified sequence
E 100156971 DENR; density-regulated protein K24272 DENR; density-regulated protein
D APOBEC1-ACF complex
E 100512412 APOBEC1; C->U-editing enzyme APOBEC-1 isoform X1 K16932 APOBEC1; C->U-editing enzyme APOBEC1 [EC:3.5.4.36]
E 100155074 A1CF; APOBEC1 complementation factor isoform X1 K24978 A1CF; APOBEC1 complementation factor
D Other transport factors
E 100151875 PYM1; partner of Y14 and mago isoform X1 K14294 WIBG; partner of Y14 and mago
E 768103 HNRNPA1; heterogeneous nuclear ribonucleoprotein A1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 100516520 HNRNPA3; heterogeneous nuclear ribonucleoprotein A3 isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 100522117 LOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoprotein A1-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 100625005 DAZAP1; DAZ-associated protein 1 K14411 MSI; RNA-binding protein Musashi
E 100627974 MSI1; RNA-binding protein Musashi homolog 1 K14411 MSI; RNA-binding protein Musashi
E 100737226 RNA-binding protein Musashi homolog 2-like K14411 MSI; RNA-binding protein Musashi
E 100158211 HBS1L; HBS1-like protein isoform X4 K14416 HBS1; elongation factor 1 alpha-like protein
E 100511788 PELO; LOW QUALITY PROTEIN: protein pelota homolog K06965 PELO; protein pelota
E 100155260 PABPN1; polyadenylate-binding protein 2 K14396 PABPN1; polyadenylate-binding protein 2
E 100525398 PABPN1L; embryonic polyadenylate-binding protein 2 isoform X2 K14396 PABPN1; polyadenylate-binding protein 2
E 100524144 DDX19A; ATP-dependent RNA helicase DDX19A K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 100524746 DDX19B; ATP-dependent RNA helicase DDX19B isoform X1 K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7]
E 100523329 DDX25; ATP-dependent RNA helicase DDX25 isoform X3 K18656 DDX25; ATP-dependent RNA helicase DDX25 [EC:5.6.2.7]
E 100525328 XAB2; pre-mRNA-splicing factor SYF1 K12867 SYF1; pre-mRNA-splicing factor SYF1
E 100517942 SARNP; SAP domain-containing ribonucleoprotein K18732 SARNP; SAP domain-containing ribonucleoprotein
E 100621543 RCC1; regulator of chromosome condensation isoform X4 K11493 RCC1; regulator of chromosome condensation
E 100522415 LARP6; la-related protein 6 K18733 LARP6; la-related protein 6
E 100625926 PURA; transcriptional activator protein Pur-alpha K21772 PURA; transcriptional activator protein Pur-alpha
E 106506852 PURB; transcriptional activator protein Pur-beta K21799 PURB; transcriptional activator protein Pur-beta
E 100525164 POLDIP3; polymerase delta-interacting protein 3 isoform X1 K22414 POLDIP3; polymerase delta-interacting protein 3
E 100622147 ZC3H11A; zinc finger CCCH domain-containing protein 11A K22415 ZC3H11; zinc finger CCCH domain-containing protein 11
E 106504183 LENG8; leukocyte receptor cluster member 8 isoform X1 K23802 LENG8; SAC3 family protein LENG8/THP3
C Surveillance factors
D Surveillance complex
E 100520896 ETF1; eukaryotic peptide chain release factor subunit 1 isoform X1 K03265 ETF1; peptide chain release factor subunit 1
E 100516529 GSPT2; eukaryotic peptide chain release factor GTP-binding subunit ERF3B isoform X1 K03267 ERF3; peptide chain release factor subunit 3
E 100517817 GSPT1; eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X1 K03267 ERF3; peptide chain release factor subunit 3
E 100738783 UPF1; regulator of nonsense transcripts 1 isoform X1 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 100621126 UPF2; LOW QUALITY PROTEIN: regulator of nonsense transcripts 2 K14327 UPF2; regulator of nonsense transcripts 2
E 414433 UPF3B; regulator of nonsense transcripts 3B isoform X2 K14328 UPF3; regulator of nonsense transcripts 3
E 100621841 UPF3A; regulator of nonsense transcripts 3A isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
D Protein phosphatase 2A
E 397656 PPP2CA; serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 397136 PPP2CB; serine/threonine-protein phosphatase 2A catalytic subunit beta isoform isoform X1 K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16]
E 397088 PPP2R1A; serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 397470 PPP2R1B; serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform isoform X3 K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A
E 397089 PPP2R2B; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 397090 PPP2R2A; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 100737053 PPP2R2C; protein phosphatase 2, regulatory subunit B, gamma isoform X1 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B
E 102160080 PPP2R3A; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha isoform X1 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 110258189 PPP2R3B; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta isoform X1 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 110261574 PPP2R3C; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma isoform X1 K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''
E 100134967 PPP2R5D; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 100101925 PPP2R5A; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 100516242 PPP2R5B; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit beta isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 100525377 PPP2R5E; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
E 100620346 PPP2R5C; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform isoform X1 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'
D Other surveillance factors
E 100625964 SMG1; serine/threonine-protein kinase SMG1 isoform X1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 100153097 SMG5; protein SMG5 isoform X1 K11125 SMG5; protein SMG5
E 100511407 SMG6; telomerase-binding protein EST1A isoform X4 K11124 SMG6; protein SMG6 [EC:3.1.-.-]
E 100515500 SMG7; protein SMG7 isoform X1 K14409 SMG7; protein SMG7
E 110258923 LOW QUALITY PROTEIN: protein SMG8-like K18734 SMG8; protein SMG8
E 100624639 SMG8; protein SMG8 K18734 SMG8; protein SMG8
E 100523741 SMG9; protein SMG9 isoform X2 K18735 SMG9; protein SMG9
E 100155829 GIGYF2; GRB10-interacting GYF protein 2 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 100620395 GIGYF1; GRB10-interacting GYF protein 1 isoform X1 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein
E 100153797 SECISBP2; selenocysteine insertion sequence-binding protein 2 isoform X3 K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2
E 100156761 SECISBP2L; selenocysteine insertion sequence-binding protein 2-like K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2
E 100515780 DHX34; LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DHX34 K20101 DHX34; ATP-dependent RNA helicase DHX34 [EC:5.6.2.6]
E 100520611 GTPBP1; GTP-binding protein 1 isoform X1 K24887 GTPBP1; GTP-binding protein 1
C Factors involved in mRNA localization
D Cargo complex
E 100152831 PUM3; pumilio homolog 3 K14844 PUF6; pumilio homology domain family member 6
E 594849 MYO5A; unconventional myosin-Va isoform X8 K10357 MYO5; myosin V
E 100155557 MYO5C; unconventional myosin-Vc isoform X1 K10357 MYO5; myosin V
E 100521829 MYO5B; unconventional myosin-Vb isoform X1 K10357 MYO5; myosin V
E 100511132 BICD1; protein bicaudal D homolog 1 isoform X3 K18739 BICD; protein bicaudal D
E 100512597 BICD2; protein bicaudal D homolog 2 isoform X1 K18739 BICD; protein bicaudal D
E 100516945 EXD1; piRNA biogenesis protein EXD1 isoform X4 K18740 EXD1; exonuclease 3'-5' domain-containing protein 1
D Factors that have mRNA localization signals
E 397653 ACTG1; actin, cytoplasmic 2 K05692 ACTB_G1; actin beta/gamma 1
E 414396 ACTB; actin, cytoplasmic 1 K05692 ACTB_G1; actin beta/gamma 1
E 414286 MBP; myelin basic protein K17269 MBP; myelin basic protein
E 100522394 VIM; vimentin isoform X1 K07606 VIM; vimentin
E 397417 MT1A; metallothionein-1A K14739 MT1_2; metallothionein 1/2
E 396827 MT-2B; metallothionein-2A K14739 MT1_2; metallothionein 1/2
E 100739663 metallothionein-1C K14739 MT1_2; metallothionein 1/2
E 448810 MYC; myc proto-oncogene protein K04377 MYC; Myc proto-oncogene protein
E 100511493 GDF1; embryonic growth/differentiation factor 1 K05495 GDF1; growth differentiation factor 1
E 110260084 TBX6; T-box transcription factor TBX6 isoform X1 K10180 TBX6; T-box protein 6
E 100157783 NANOS1; nanos homolog 1 K18741 NANOS1; protein nanos 1
D Trans-acting binding proteins
E 100144524 ZBP1; Z-DNA-binding protein 1 K12965 ZBP1; Z-DNA binding protein 1
E 100516780 KHSRP; far upstream element-binding protein 2 isoform X1 K13210 FUBP; far upstream element-binding protein
E 100524188 FUBP3; far upstream element-binding protein 3 K13210 FUBP; far upstream element-binding protein
E 100525995 FUBP1; far upstream element-binding protein 1 isoform X9 K13210 FUBP; far upstream element-binding protein
E 574059 EEF1A1; elongation factor 1-alpha 1 K03231 EEF1A; elongation factor 1-alpha
E 100514912 elongation factor 1-alpha, oocyte form-like K03231 EEF1A; elongation factor 1-alpha
E 110257403 EEF1A2; elongation factor 1-alpha 2 K03231 EEF1A; elongation factor 1-alpha
E 100620900 LOW QUALITY PROTEIN: elongation factor 1-alpha, somatic form-like K03231 EEF1A; elongation factor 1-alpha
E 397022 EEF1G; LOW QUALITY PROTEIN: elongation factor 1-gamma K03233 EEF1G; elongation factor 1-gamma
E 100521762 HNRNPA2B1; heterogeneous nuclear ribonucleoproteins A2/B1 isoform X1 K13158 HNRNPA2B1; heterogeneous nuclear ribonucleoprotein A2/B1
E 100739544 HAX1; HCLS1-associated protein X-1 isoform X3 K16220 HAX1; HCLS1-associated protein X-1
E 100514990 AGFG1; arf-GAP domain and FG repeat-containing protein 1 isoform X1 K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1
E 100516319 STAU2; double-stranded RNA-binding protein Staufen homolog 2 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 100626560 STAU1; double-stranded RNA-binding protein Staufen homolog 1 isoform X9 K17597 STAU; double-stranded RNA-binding protein Staufen
E 100621977 IGF2BP3; insulin-like growth factor 2 mRNA-binding protein 3 isoform X1 K13197 IGF2BP3; insulin-like growth factor 2 mRNA-binding protein 3
E 397461 PTBP1; polypyrimidine tract-binding protein 1 K13218 PTBP1; polypyrimidine tract-binding protein 1
E 100048944 CPEB1; cytoplasmic polyadenylation element-binding protein 1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 100152117 CPEB3; cytoplasmic polyadenylation element-binding protein 3 isoform X8 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 100462674 CPEB2; cytoplasmic polyadenylation element-binding protein 2 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 100521758 CPEB4; cytoplasmic polyadenylation element-binding protein 4 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
D Other mRNA localization factors
E 100512131 FXR2; fragile X mental retardation syndrome-related protein 2 K15516 FMR; fragile X mental retardation protein
E 100525539 FXR1; fragile X mental retardation syndrome-related protein 1 isoform X4 K15516 FMR; fragile X mental retardation protein
E 100155078 FMR1; synaptic functional regulator FMR1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 100523290 CYFIP2; cytoplasmic FMR1-interacting protein 2 isoform X1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 100627463 CYFIP1; LOW QUALITY PROTEIN: cytoplasmic FMR1-interacting protein 1 K05749 CYFIP; cytoplasmic FMR1 interacting protein
E 397665 PCBP2; poly(rC)-binding protein 2 K13162 PCBP2; poly(rC)-binding protein 2
E 100624867 PCBP3; poly(rC)-binding protein 3 isoform X1 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 100620941 PCBP4; poly(rC)-binding protein 4 isoform X2 K21444 PCBP3_4; poly(rC)-binding protein 3/4
E 100512646 CAPRIN1; caprin-1 K18743 CAPRIN1; caprin-1
E 100624034 CAPRIN2; caprin-2 isoform X1 K18744 CAPRIN2; caprin-2
E 100620708 YBX1; LOW QUALITY PROTEIN: nuclease-sensitive element-binding protein 1 K09276 YBX1; Y-box-binding protein 1
C mRNA cycle factors
D Common to processing body (P body) and stress granule
E 100515927 XRN1; LOW QUALITY PROTEIN: 5'-3' exoribonuclease 1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E 100155245 AGO2; protein argonaute-2 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 100499507 AGO4; protein argonaute-4 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 100499509 EIF2C3; protein argonaute-3 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 100499510 AGO1; protein argonaute-1 K11593 ELF2C; eukaryotic translation initiation factor 2C
E 100101924 EIF4E2; eukaryotic translation initiation factor 4E type 2 K03259 EIF4E; translation initiation factor 4E
E 100038030 EIF4E; eukaryotic translation initiation factor 4E isoform X2 K03259 EIF4E; translation initiation factor 4E
E 100523233 EIF4E1B; eukaryotic translation initiation factor 4E type 1B isoform X2 K03259 EIF4E; translation initiation factor 4E
E 100738783 UPF1; regulator of nonsense transcripts 1 isoform X1 K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
E 100515940 DDX3X; ATP-dependent RNA helicase DDX3X K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 100624590 ATP-dependent RNA helicase DDX3X isoform X1 K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7]
E 100515499 DDX6; probable ATP-dependent RNA helicase DDX6 isoform X1 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 100525021 MEX3C; RNA-binding E3 ubiquitin-protein ligase MEX3C K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 100512764 MEX3D; RNA-binding protein MEX3D K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 100155949 MEX3A; RNA-binding protein MEX3A K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 110261545 MEX3B; RNA-binding protein MEX3B isoform X1 K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27]
E 100233181 FASTK; fas-activated serine/threonine kinase K08290 FASTK; Fas-activated serine/threonine kinase [EC:2.7.11.8]
E 100511455 LSM14A; protein LSM14 homolog A K18749 LSM14; protein LSM14
E 100626826 LSM14B; protein LSM14 homolog B isoform X1 K18749 LSM14; protein LSM14
E 100511501 PCBP1; poly(rC)-binding protein 1 K12889 PCBP1; poly(rC)-binding protein 1
E 397665 PCBP2; poly(rC)-binding protein 2 K13162 PCBP2; poly(rC)-binding protein 2
E 100620708 YBX1; LOW QUALITY PROTEIN: nuclease-sensitive element-binding protein 1 K09276 YBX1; Y-box-binding protein 1
E 100738579 LIMD1; LIM domain-containing protein 1 K16682 AJUBA; LIM domain-containing protein
E 100626166 AJUBA; LIM domain-containing protein ajuba K16682 AJUBA; LIM domain-containing protein
E 110261274 WTIP; Wilms tumor protein 1-interacting protein isoform X1 K16682 AJUBA; LIM domain-containing protein
E 100512412 APOBEC1; C->U-editing enzyme APOBEC-1 isoform X1 K16932 APOBEC1; C->U-editing enzyme APOBEC1 [EC:3.5.4.36]
E 100037939 APOBEC3B; DNA dC->dU-editing enzyme APOBEC-3B K18750 APOBEC3; C->U-editing enzyme APOBEC3 [EC:3.5.4.-]
E 100521086 MOV10; putative helicase MOV-10 isoform X2 K18422 MOV10; helicase MOV-10 [EC:5.6.2.5]
E 100625012 PNRC2; proline-rich nuclear receptor coactivator 2 K18751 PNRC2; proline-rich nuclear receptor coactivator 2
E 100627484 TNPO1; transportin-1 isoform X2 K18752 TNPO1; transportin-1
E 100625964 SMG1; serine/threonine-protein kinase SMG1 isoform X1 K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1]
E 100153097 SMG5; protein SMG5 isoform X1 K11125 SMG5; protein SMG5
E 100511407 SMG6; telomerase-binding protein EST1A isoform X4 K11124 SMG6; protein SMG6 [EC:3.1.-.-]
E 100515500 SMG7; protein SMG7 isoform X1 K14409 SMG7; protein SMG7
E 100316849 ZFP36; tristetraprolin K15308 TTP; tristetraprolin
E 100513591 ZFP36L2; mRNA decay activator protein ZFP36L2 K18753 ZFP36L; butyrate response factor
E 100624279 ZFP36L1; mRNA decay activator protein ZFP36L1 K18753 ZFP36L; butyrate response factor
E 100142662 LIN28A; protein lin-28 homolog A K18754 LIN28; protein lin-28
E 100738513 LIN28B; protein lin-28 homolog B precursor K18754 LIN28; protein lin-28
E 397014 HTT; huntingtin K04533 HD; huntingtin
E 100511694 IPO8; importin-8 isoform X1 K18755 IPO8; importin-8
E 100154253 BICC1; protein bicaudal C homolog 1 isoform X1 K18756 BICC1; protein bicaudal C
E 768103 HNRNPA1; heterogeneous nuclear ribonucleoprotein A1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 100516520 HNRNPA3; heterogeneous nuclear ribonucleoprotein A3 isoform X1 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 100522117 LOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoprotein A1-like K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3
E 397652 PRKACA; cAMP-dependent protein kinase catalytic subunit alpha isoform X1 K04345 PKA; protein kinase A [EC:2.7.11.11]
E 100623628 PRKACB; cAMP-dependent protein kinase catalytic subunit beta isoform X1 K04345 PKA; protein kinase A [EC:2.7.11.11]
E 100525545 LARP1; la-related protein 1 K18757 LARP1; la-related protein 1
E 100621145 LARP1B; la-related protein 1B isoform X1 K18757 LARP1; la-related protein 1
E 100153708 ATXN2; ataxin-2 isoform X10 K23625 ATXN2_2L; ataxin 2/2L
E 100515946 ATXN2L; ataxin-2-like protein isoform X5 K23625 ATXN2_2L; ataxin 2/2L
D P-body specific factors
E 100516785 DCP2; m7GpppN-mRNA hydrolase isoform X1 K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 100623102 DCP1A; mRNA-decapping enzyme 1A K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-]
E 100620800 DCP1B; mRNA-decapping enzyme 1B isoform X1 K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 100627320 LSM1; U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 100144534 LSM2; U6 snRNA-associated Sm-like protein LSm2 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 100514071 LSM3; U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 110259317 LSM4; U6 snRNA-associated Sm-like protein LSm4 isoform X1 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 100624767 LSM5; U6 snRNA-associated Sm-like protein LSm5 isoform X1 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 100522884 LSM6; U6 snRNA-associated Sm-like protein LSm6 isoform X2 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 100515470 LSM7; U6 snRNA-associated Sm-like protein LSm7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 100739296 LSM8; LSM8 homolog, U6 small nuclear RNA associated K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
E 100157157 KLC4; kinesin light chain 4 isoform X1 K10407 KLC; kinesin light chain
E 100521540 KLC2; kinesin light chain 2 isoform X2 K10407 KLC; kinesin light chain
E 100523621 KLC1; kinesin light chain 1 isoform X7 K10407 KLC; kinesin light chain
E 102158866 KLC3; kinesin light chain 3 K10407 KLC; kinesin light chain
E 594849 MYO5A; unconventional myosin-Va isoform X8 K10357 MYO5; myosin V
E 100155557 MYO5C; unconventional myosin-Vc isoform X1 K10357 MYO5; myosin V
E 100521829 MYO5B; unconventional myosin-Vb isoform X1 K10357 MYO5; myosin V
E 733594 TUBA1B; tubulin alpha-1B chain K07374 TUBA; tubulin alpha
E 100151951 TUBA4A; tubulin alpha-4A chain K07374 TUBA; tubulin alpha
E 100155138 tubulin alpha-3 chain isoform X2 K07374 TUBA; tubulin alpha
E 100158003 LOW QUALITY PROTEIN: tubulin alpha-1D chain K07374 TUBA; tubulin alpha
E 100127131 tubulin alpha-1C chain isoform X2 K07374 TUBA; tubulin alpha
E 100518253 TUBA8; tubulin alpha-8 chain K07374 TUBA; tubulin alpha
E 100510930 tubulin alpha-3 chain isoform X2 K07374 TUBA; tubulin alpha
E 100135051 TUBA1A; tubulin alpha-1A chain K07374 TUBA; tubulin alpha
E 100623355 TUBAL3; tubulin alpha chain-like 3 K07374 TUBA; tubulin alpha
E 100048944 CPEB1; cytoplasmic polyadenylation element-binding protein 1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 100152117 CPEB3; cytoplasmic polyadenylation element-binding protein 3 isoform X8 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 100462674 CPEB2; cytoplasmic polyadenylation element-binding protein 2 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 100521758 CPEB4; cytoplasmic polyadenylation element-binding protein 4 isoform X1 K02602 CPEB; cytoplasmic polyadenylation element-binding protein
E 100524914 GEMIN5; gem-associated protein 5 isoform X1 K13133 GEMIN5; gem associated protein 5
E 100513802 TACC3; transforming acidic coiled-coil-containing protein 3 K14283 TACC3; transforming acidic coiled-coil-containing protein 3
E 100624184 TNRC6C; trinucleotide repeat-containing gene 6C protein isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 102159442 TNRC6B; trinucleotide repeat-containing gene 6B protein isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 110258158 TNRC6A; trinucleotide repeat-containing gene 6A protein isoform X1 K18412 TNRC6; trinucleotide repeat-containing gene 6 protein
E 100511993 CNOT1; CCR4-NOT transcription complex subunit 1 isoform X1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 100153354 CNOT2; CCR4-NOT transcription complex subunit 2 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 100520963 CNOT3; CCR4-NOT transcription complex subunit 3 isoform X3 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 100622832 CNOT4; CCR4-NOT transcription complex subunit 4 isoform X1 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 100512848 CNOT6L; CCR4-NOT transcription complex subunit 6-like isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 100516183 CNOT6; CCR4-NOT transcription complex subunit 6 isoform X2 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 100154442 CNOT7; CCR4-NOT transcription complex subunit 7 isoform X1 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 100525087 CNOT8; CCR4-NOT transcription complex subunit 8 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 100511994 uncharacterized protein KIAA0355 homolog K26671 GARRE1; granule associated Rac and RHOG effector protein 1
E 100153005 DIS3L2; DIS3-like exonuclease 2 K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-]
E 100153107 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit PAN2 isoform X7 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E 100514180 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit PAN3 isoform X1 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
E 100048932 BTG2; protein BTG2 K14443 TOB; protein Tob/BTG
E 100048957 BTG3; protein BTG3 K14443 TOB; protein Tob/BTG
E 100101473 BTG1; protein BTG1 K14443 TOB; protein Tob/BTG
E 100144440 TOB1; protein Tob1 K14443 TOB; protein Tob/BTG
E 100514308 BTG4; protein BTG4 K14443 TOB; protein Tob/BTG
E 110260627 TOB2; protein Tob2 K14443 TOB; protein Tob/BTG
E 100152730 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter isoform X1 K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter
E 100514819 PATL1; protein PAT1 homolog 1 isoform X1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
E 100156966 EDC3; enhancer of mRNA-decapping protein 3 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 100521132 EDC4; enhancer of mRNA-decapping protein 4 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 100512966 NANOS2; nanos homolog 2 K18760 NANOS2; protein nanos 2
E 100621126 UPF2; LOW QUALITY PROTEIN: regulator of nonsense transcripts 2 K14327 UPF2; regulator of nonsense transcripts 2
E 414433 UPF3B; regulator of nonsense transcripts 3B isoform X2 K14328 UPF3; regulator of nonsense transcripts 3
E 100621841 UPF3A; regulator of nonsense transcripts 3A isoform X1 K14328 UPF3; regulator of nonsense transcripts 3
E 100302538 TRIM21; E3 ubiquitin-protein ligase TRIM21 K10651 TRIM21; tripartite motif-containing protein 21 [EC:2.3.2.27]
E 100623572 TRIM71; E3 ubiquitin-protein ligase TRIM71 K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27]
E 100620235 POLR2G; DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
E 397588 EIF2AK2; interferon-induced, double-stranded RNA-activated protein kinase K16195 EIF2AK2; eukaryotic translation initiation factor 2-alpha kinase 2 [EC:2.7.11.1]
E 100156191 ZAR1L; ZAR1-like protein isoform X1 K18762 ZAR1; zygote arrest protein 1
E 574050 ZAR1; zygote arrest protein 1 K18762 ZAR1; zygote arrest protein 1
E 100623159 YTHDF2; LOW QUALITY PROTEIN: YTH domain-containing family protein 2 K20102 YTHDF; YTH domain-containing family protein
E 106510070 YTHDF3; YTH domain-containing family protein 3 isoform X1 K20102 YTHDF; YTH domain-containing family protein
E 110257488 YTHDF1; YTH domain-containing family protein 1 isoform X1 K20102 YTHDF; YTH domain-containing family protein
D Stress granule specific factors
E 100158186 TIAL1; nucleolysin TIAR isoform X2 K13201 TIA1; nucleolysin TIA-1/TIAR
E 100736894 TIA1; nucleolysin TIA-1 isoform X7 K13201 TIA1; nucleolysin TIA-1/TIAR
E 100153958 PABPC1; polyadenylate-binding protein 1 K13126 PABPC; polyadenylate-binding protein
E 100515840 PABPC4; polyadenylate-binding protein 4 isoform X5 K13126 PABPC; polyadenylate-binding protein
E 100151962 PABPC1L; polyadenylate-binding protein 1-like isoform X1 K13126 PABPC; polyadenylate-binding protein
E 100525442 polyadenylate-binding protein 1-like 2 K13126 PABPC; polyadenylate-binding protein
E 100627820 PABPC4L; LOW QUALITY PROTEIN: polyadenylate-binding protein 4-like K13126 PABPC; polyadenylate-binding protein
E 100623240 PABPC1L2A; polyadenylate-binding protein 1-like 2 K13126 PABPC; polyadenylate-binding protein
E 100518351 polyadenylate-binding protein 5 K13126 PABPC; polyadenylate-binding protein
E 100516319 STAU2; double-stranded RNA-binding protein Staufen homolog 2 isoform X1 K17597 STAU; double-stranded RNA-binding protein Staufen
E 100626560 STAU1; double-stranded RNA-binding protein Staufen homolog 1 isoform X9 K17597 STAU; double-stranded RNA-binding protein Staufen
E 100512131 FXR2; fragile X mental retardation syndrome-related protein 2 K15516 FMR; fragile X mental retardation protein
E 100525539 FXR1; fragile X mental retardation syndrome-related protein 1 isoform X4 K15516 FMR; fragile X mental retardation protein
E 100155078 FMR1; synaptic functional regulator FMR1 isoform X1 K15516 FMR; fragile X mental retardation protein
E 100144524 ZBP1; Z-DNA-binding protein 1 K12965 ZBP1; Z-DNA binding protein 1
E 100337681 ELAVL1; ELAV-like protein 1 K13088 ELAVL1; ELAV-like protein 1
E 100513766 G3BP1; ras GTPase-activating protein-binding protein 1 K17265 G3BP1; Ras GTPase-activating protein-binding protein 1 [EC:5.6.2.5 5.6.2.3]
E 100621975 G3BP2; ras GTPase-activating protein-binding protein 2 isoform X2 K24983 G3BP2; Ras GTPase-activating protein-binding protein 2
E 100622221 EIF2A; eukaryotic translation initiation factor 2A isoform X1 K15026 EIF2A; translation initiation factor 2A
E 100101928 EIF4A2; eukaryotic initiation factor 4A-II K03257 EIF4A; translation initiation factor 4A
E 100101929 EIF4A1; eukaryotic initiation factor 4A-I K03257 EIF4A; translation initiation factor 4A
E 100101926 EIF4A3; eukaryotic initiation factor 4A-III K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7]
E 100520826 EIF4G2; eukaryotic translation initiation factor 4 gamma 2 K03260 EIF4G; translation initiation factor 4G
E 449528 EIF4G1; eukaryotic translation initiation factor 4 gamma 1 K03260 EIF4G; translation initiation factor 4G
E 100516495 EIF4G3; eukaryotic translation initiation factor 4 gamma 3 isoform X1 K03260 EIF4G; translation initiation factor 4G
E 100515286 RPS6KA2; LOW QUALITY PROTEIN: ribosomal protein S6 kinase alpha-2 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 100522174 RPS6KA3; ribosomal protein S6 kinase alpha-3 isoform X4 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 100522294 RPS6KA6; ribosomal protein S6 kinase alpha-6 isoform X2 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 100523972 RPS6KA1; ribosomal protein S6 kinase alpha-1 K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1]
E 397605 RACK1; receptor of activated protein C kinase 1 K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein
E 100513840 TRAF2; TNF receptor-associated factor 2 K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27]
E 100153087 nuclear RNA export factor 2 K14284 NXF; nuclear RNA export factor
E 100628213 NXF1; nuclear RNA export factor 1 K14284 NXF; nuclear RNA export factor
E 102164431 nuclear RNA export factor 3-like K14284 NXF; nuclear RNA export factor
E 110257687 nuclear RNA export factor 3-like K14284 NXF; nuclear RNA export factor
E 100621798 HDAC6; histone deacetylase 6 isoform X2 K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98]
E 100153172 TDRD3; tudor domain-containing protein 3 isoform X2 K18404 TDRD3; tudor domain-containing protein 3
E 100522458 LARP4B; la-related protein 4B isoform X1 K18763 LARP4; la-related protein 4
E 100626466 LARP4; la-related protein 4 isoform X3 K18763 LARP4; la-related protein 4
B mRNA degradation factors
C 5'-3' decay
D Decapping complex
E 100623102 DCP1A; mRNA-decapping enzyme 1A K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-]
E 100620800 DCP1B; mRNA-decapping enzyme 1B isoform X1 K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-]
E 100516785 DCP2; m7GpppN-mRNA hydrolase isoform X1 K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62]
E 100515499 DDX6; probable ATP-dependent RNA helicase DDX6 isoform X1 K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
E 100156966 EDC3; enhancer of mRNA-decapping protein 3 K12615 EDC3; enhancer of mRNA-decapping protein 3
E 100521132 EDC4; enhancer of mRNA-decapping protein 4 K12616 EDC4; enhancer of mRNA-decapping protein 4
E 100514819 PATL1; protein PAT1 homolog 1 isoform X1 K12617 PATL1; DNA topoisomerase 2-associated protein PAT1
D Lsm complex
E 100627320 LSM1; U6 snRNA-associated Sm-like protein LSm1 K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1
E 100144534 LSM2; U6 snRNA-associated Sm-like protein LSm2 K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2
E 100514071 LSM3; U6 snRNA-associated Sm-like protein LSm3 K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3
E 110259317 LSM4; U6 snRNA-associated Sm-like protein LSm4 isoform X1 K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4
E 100624767 LSM5; U6 snRNA-associated Sm-like protein LSm5 isoform X1 K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5
E 100522884 LSM6; U6 snRNA-associated Sm-like protein LSm6 isoform X2 K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6
E 100515470 LSM7; U6 snRNA-associated Sm-like protein LSm7 K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7
E 100739296 LSM8; LSM8 homolog, U6 small nuclear RNA associated K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8
D 5' exonucleases
E 100515927 XRN1; LOW QUALITY PROTEIN: 5'-3' exoribonuclease 1 K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-]
E 100517201 XRN2; LOW QUALITY PROTEIN: 5'-3' exoribonuclease 2 K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-]
E 100152693 NUDT16; U8 snoRNA-decapping enzyme K16855 NUDT16; U8 snoRNA-decapping enzyme [EC:3.6.1.62 3.6.1.64]
D Other 5'-3' decay factors
E 396689 DCPS; m7GpppX diphosphatase K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E 100524104 HELZ; probable helicase with zinc finger domain isoform X1 K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-]
C 3'-5' decay
D Core exosome factors
E 100153550 EXOSC1; exosome complex component CSL4 K07573 CSL4; exosome complex component CSL4
E 100523112 EXOSC2; exosome complex component RRP4 isoform X1 K03679 RRP4; exosome complex component RRP4
E 100152421 EXOSC3; exosome complex component RRP40 K03681 RRP40; exosome complex component RRP40
E 100511875 EXOSC4; exosome complex component RRP41 K11600 RRP41; exosome complex component RRP41
E 100512107 EXOSC5; exosome complex component RRP46 K12590 RRP46; exosome complex component RRP46
E 100737302 EXOSC6; exosome complex component MTR3 K12587 MTR3; exosome complex component MTR3
E 100511347 EXOSC7; exosome complex component RRP42 K12589 RRP42; exosome complex component RRP42
E 100157236 EXOSC8; exosome complex component RRP43 K12586 RRP43; exosome complex component RRP43
E 100521809 EXOSC9; exosome complex component RRP45 isoform X1 K03678 RRP45; exosome complex component RRP45
D Exosome cofactors
E 100521470 DIS3; exosome complex exonuclease RRP44 isoform X1 K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
E 100515640 DIS3L; DIS3-like exonuclease 1 isoform X1 K18681 DIS3L; DIS3-like exonuclease 1 [EC:3.1.13.-]
E 100511264 EXOSC10; LOW QUALITY PROTEIN: exosome component 10 K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-]
E 100515656 C1D; nuclear nucleic acid-binding protein C1D isoform X1 K12592 C1D; exosome complex protein LRP1
E 100739161 M-phase phosphoprotein 6 K12593 MPHOSPH6; M-phase phosphoprotein 6, animal type
E 110261257 MPHOSPH6; M-phase phosphoprotein 6 K12593 MPHOSPH6; M-phase phosphoprotein 6, animal type
E 100158037 DDX60; probable ATP-dependent RNA helicase DDX60 isoform X1 K20103 DDX60; ATP-dependent RNA helicase DDX60 [EC:5.6.2.7]
D TRAMP complex
E 100517864 PAPD7; non-canonical poly(A) RNA polymerase PAPD7 isoform X1 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 100625961 PAPD5; non-canonical poly(A) RNA polymerase PAPD5 isoform X1 K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]
E 100520354 ZCCHC7; zinc finger CCHC domain-containing protein 7 K12597 AIR1_2; protein AIR1/2
E 100518521 SKIV2L2; superkiller viralicidic activity 2-like 2 K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
D Ski complex
E 100124376 SKIV2L; helicase SKI2W K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6]
E 100522857 TTC37; tetratricopeptide repeat protein 37 isoform X1 K12600 SKI3; superkiller protein 3
E 100153204 WDR61; WD repeat-containing protein 61 isoform X1 K12602 WDR61; WD repeat-containing protein 61
D Ccr4-NOT complex
E 100512848 CNOT6L; CCR4-NOT transcription complex subunit 6-like isoform X1 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 100516183 CNOT6; CCR4-NOT transcription complex subunit 6 isoform X2 K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
E 100511993 CNOT1; CCR4-NOT transcription complex subunit 1 isoform X1 K12604 CNOT1; CCR4-NOT transcription complex subunit 1
E 100153354 CNOT2; CCR4-NOT transcription complex subunit 2 K12605 CNOT2; CCR4-NOT transcription complex subunit 2
E 100520963 CNOT3; CCR4-NOT transcription complex subunit 3 isoform X3 K12580 CNOT3; CCR4-NOT transcription complex subunit 3
E 100622832 CNOT4; CCR4-NOT transcription complex subunit 4 isoform X1 K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
E 100154442 CNOT7; CCR4-NOT transcription complex subunit 7 isoform X1 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 100525087 CNOT8; CCR4-NOT transcription complex subunit 8 K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8
E 100153939 CNOT9; LOW QUALITY PROTEIN: cell differentiation protein RCD1 homolog K12606 RCD1; CCR4-NOT transcription complex subunit 9
E 100623377 CNOT10; CCR4-NOT transcription complex subunit 10 isoform X1 K12607 CNOT10; CCR4-NOT transcription complex subunit 10
D Pan complex
E 100153107 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit PAN2 isoform X7 K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
E 100514180 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit PAN3 isoform X1 K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3
D Other 3'-5' decay factors
E 100515887 PARN; poly(A)-specific ribonuclease PARN isoform X1 K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E 100152694 PNLDC1; poly(A)-specific ribonuclease PNLDC1 isoform X3 K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4]
E 100626674 DHX36; ATP-dependent RNA helicase DHX36 isoform X1 K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
E 100048932 BTG2; protein BTG2 K14443 TOB; protein Tob/BTG
E 100048957 BTG3; protein BTG3 K14443 TOB; protein Tob/BTG
E 100101473 BTG1; protein BTG1 K14443 TOB; protein Tob/BTG
E 100144440 TOB1; protein Tob1 K14443 TOB; protein Tob/BTG
E 100514308 BTG4; protein BTG4 K14443 TOB; protein Tob/BTG
E 110260627 TOB2; protein Tob2 K14443 TOB; protein Tob/BTG
E 397208 CSF2; granulocyte-macrophage colony-stimulating factor precursor K05427 CSF2; granulocyte-macrophage colony-stimulating factor
E 100513746 NOCT; nocturnin isoform X2 K18764 NOCT; nocturnin [EC:3.1.3.108]
E 100623771 ERI1; 3'-5' exoribonuclease 1 isoform X1 K18416 THEX1; 3'-5' exoribonuclease 1 [EC:3.1.-.-]
E 100526162 ERI2; ERI1 exoribonuclease 2 isoform X1 K18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-]
E 396689 DCPS; m7GpppX diphosphatase K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59]
E 100157651 PDE12; 2',5'-phosphodiesterase 12 K19612 PDE12; 2',5'-phosphodiesterase [EC:3.1.13.4 3.1.4.-]
E 100153993 IREB2; iron-responsive element-binding protein 2 K22416 IREB2; iron-responsive element-binding protein 2
E 100524104 HELZ; probable helicase with zinc finger domain isoform X1 K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-]
E 100519780 HELZ2; helicase with zinc finger domain 2 K25165 HELZ2; 3'-5' exoribonuclease HELZ2 [EC:3.1.13.1 5.6.2.6]
E 100154479 NRDE2; protein NRDE2 homolog isoform X1 K26109 NRDE2; nuclear exosome regulator NRDE2
E 100156574 SAMD4A; protein Smaug homolog 1 isoform X1 K27396 SMG; protein Smaug
E 100516158 SAMD4B; protein Smaug homolog 2 isoform X1 K27396 SMG; protein Smaug
E 100157761 FOCAD; focadhesin isoform X1 K27498 FOCAD; focadhesin
C Other degradation factors
D RNases
E 100312980 RNASE1; ribonuclease pancreatic precursor K01168 RNASE1_2; pancreatic ribonuclease [EC:4.6.1.18]
E 102163838 non-secretory ribonuclease-like K01168 RNASE1_2; pancreatic ribonuclease [EC:4.6.1.18]
E 396976 RNASE4; ribonuclease 4 precursor K16632 RNASE4; ribonuclease 4 [EC:3.1.27.-]
E 110261716 ribonuclease 4-like K16632 RNASE4; ribonuclease 4 [EC:3.1.27.-]
E 100312981 RNASE6; ribonuclease K3 precursor K01172 RNASE6_7_8; ribonuclease 6/7/8 [EC:3.1.27.-]
E 100626020 ribonuclease 7 K01172 RNASE6_7_8; ribonuclease 6/7/8 [EC:3.1.27.-]
E 102161671 RNASE11; LOW QUALITY PROTEIN: probable ribonuclease 11 K16633 RNASE11; ribonuclease 11 [EC:3.1.27.-]
E 100511889 ZC3H12C; probable ribonuclease ZC3H12C isoform X1 K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 100623018 ZC3H12B; probable ribonuclease ZC3H12B K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 100156984 ZC3H12D; probable ribonuclease ZC3H12D K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
E 110261148 ZC3H12A; endoribonuclease ZC3H12A K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-]
#
AProkaryotic type
B Bacterial mRNA degradation factors
C RNA degradosome components
D Ribonucreases
E 100524961 DROSHA; LOW QUALITY PROTEIN: ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
E 100522629 REXO2; oligoribonuclease, mitochondrial K13288 orn; oligoribonuclease [EC:3.1.-.-]
D Helicases
D Other RNA degradosome components
E 692156 ENO3; beta-enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 100157750 ENO2; gamma-enolase isoform X1 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 100738870 ENO1; alpha-enolase isoform X1 K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
E 100642182 PNPT1; polyribonucleotide nucleotidyltransferase 1, mitochondrial K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
E 733601 PFKM; ATP-dependent 6-phosphofructokinase, muscle type K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 100621757 PFKL; ATP-dependent 6-phosphofructokinase, liver type K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
E 100521394 PFKP; ATP-dependent 6-phosphofructokinase, platelet type K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C Other RNA degradation factors
D Chaperones
E 100521183 HSPA9; stress-70 protein, mitochondrial K04043 dnaK; molecular chaperone DnaK
E 492279 HSPD1; 60 kDa heat shock protein, mitochondrial K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D Others
D Bacterial Small RNA Regulators
B Archeal mRNA degradation factors
C Exosome components
D Core exosome
E 100523112 EXOSC2; exosome complex component RRP4 isoform X1 K03679 RRP4; exosome complex component RRP4
E 100153550 EXOSC1; exosome complex component CSL4 K07573 CSL4; exosome complex component CSL4
D Cofactors
E 100511875 EXOSC4; exosome complex component RRP41 K11600 RRP41; exosome complex component RRP41
E 100511347 EXOSC7; exosome complex component RRP42 K12589 RRP42; exosome complex component RRP42
D Others
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#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 25, 2024