+E Ribosome biogenesis KO
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Ribosome Biogenesis - Picosynechococcus sp. PCC 7002
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D SYNPCC7002_A0061 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D SYNPCC7002_A2542 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C SYNPCC7002_A0520 era; GTP-binding protein Era K03595 era; GTPase
C SYNPCC7002_A2058 GTP binding protein K03595 era; GTPase
C SYNPCC7002_A1521 GTP binding protein K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C SYNPCC7002_A0753 nusA; transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA
C SYNPCC7002_A0931 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
C SYNPCC7002_A1030 nusG; transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D SYNPCC7002_A2357 rsuA; RNA pseudouridylate synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D SYNPCC7002_A0897 ksgA; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D SYNPCC7002_A0507 rsmB; ribosomal RNA small subunit methyltransferase B (rRNA (cytosine-C(5)-)-methyltransferase) K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D SYNPCC7002_A2310 conserved hypothetical protein (DUF558) K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D SYNPCC7002_A0748 gidB; glucose inhibited division protein B K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D SYNPCC7002_A1677 S-adenosyl-methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D SYNPCC7002_A2359 conserved hypothetical protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D SYNPCC7002_A0475 hemolysin A K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D SYNPCC7002_A0385 rRNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D SYNPCC7002_A1184 putative SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D SYNPCC7002_A1681 Predicted N6-adenine-specific DNA methylase K25137 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173]
D SYNPCC7002_A0715 radical SAM enzyme, Cfr family K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D SYNPCC7002_A0475 hemolysin A K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D SYNPCC7002_A0557 rumA; 23S rRNA (uracil-5-)-methyltransferase RumA K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D SYNPCC7002_A2836 ribosomal large chain pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D SYNPCC7002_A0958 rluA; 23S rRNA-specific pseudouridylate synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D SYNPCC7002_A2162 putative pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D SYNPCC7002_A2385 probable RNA pseudouridine synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
B ribosomal protein modification factors
C SYNPCC7002_A0096 rimI; ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C SYNPCC7002_A0684 rimK; ribosomal protein S6 modification protein K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
C SYNPCC7002_A1245 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
C SYNPCC7002_A0619 tRNA modifying enzyme MiaB-like protein K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C SYNPCC7002_A1247 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
B rRNA processing factors
C SYNPCC7002_A0061 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C SYNPCC7002_A2542 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C SYNPCC7002_A0788 rne; ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
C SYNPCC7002_A0946 YqgFc; putative Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
C SYNPCC7002_A0384 Ribonuclease III protein K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-]
B rRNA helicases
C SYNPCC7002_A0618 deaD; ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
B GTPases
C SYNPCC7002_A0520 era; GTP-binding protein Era K03595 era; GTPase
C SYNPCC7002_A2058 GTP binding protein K03595 era; GTPase
C SYNPCC7002_A0691 probable ribosome-associated GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C SYNPCC7002_A0123 GTPase of unknown function K03977 engA; GTPase
C SYNPCC7002_A1521 GTP binding protein K03979 obgE; GTPase [EC:3.6.5.-]
C SYNPCC7002_A0072 GTPase of unknown function K14540 rbgA; ribosome biogenesis GTPase A
C SYNPCC7002_A0944 putative GTPase K03665 hflX; GTPase
B Other maturation factors
C SYNPCC7002_A1242 yrdC domain protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C SYNPCC7002_A2816 GTP pyrophosphokinase/RelA/SpoT family protein K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C SYNPCC7002_A0074 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C SYNPCC7002_A0752 conserved hypothetical protein K09748 rimP; ribosome maturation factor RimP
C SYNPCC7002_A2762 S4 domain protein K14761 rlbA; ribosome-associated protein
C SYNPCC7002_A0872 iojap-related protein K09710 ybeB; ribosome-associated protein
C SYNPCC7002_A1764 conserved hypothetical protein (TIGR00043) K07042 ybeY; probable rRNA maturation factor
C SYNPCC7002_A1728 ychF; GTP-binding protein K06942 ychF; ribosome-binding ATPase
C SYNPCC7002_A0993 conserved hypothetical protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024