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Transfer RNA Biogenesis - Caldanaerobacter subterraneus subsp. tengcongensis
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AEukaryotic type
B 5'processing factors
C Ribonucrease P
B 3'processing and CCA adding factors
C 3'processing factors
C CCA adding factors
D TTE1322 PcnB2; tRNA nucleotidyltransferase/poly(A) polymerase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
B tRNA spricing factors
C tRNA splicing endonuclease complex
C tRNA splicing ligase complex
D TTE0709 RtcB; conserved hypothetical protein K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
C Other tRNA splicing factors
B tRNA transport factors
C tRNA export factors
C tRNA import factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D TTE0929 GlnS; Glutamyl- and glutaminyl-tRNA synthetases K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D TTE2319 ProS; Prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D TTE1594 IleS; Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D TTE0324 LeuS; Leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D TTE0110 MetG; Methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D TTE2533 ArgS; Arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D TTE2372 LysU; Lysyl-tRNA synthetase class II K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D TTE1231 AspS; Aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
C Other AARSs
D TTE1248 AlaS; Alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D TTE0934 predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D TTE0978 GRS1; Glycyl-tRNA synthetase, class II K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D TTE1713 ThrS; Threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D TTE0025 SerS; Seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D TTE2315 CysS; Cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D TTE0781 ValS; Valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D TTE1230 HisS; Histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D TTE1689 PheS; Phenylalanyl-tRNA synthetase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D TTE1688 PheT; Phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D TTE2679 TyrS; Tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D TTE1453 TrpS; Tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C Trans-editing factors
D TTE1196 Dtd; D-Tyr-tRNAtyr deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
C AARS associated factors
D TTE0963 Hit; Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
B tRNA modification factors
C Deaminases
C Dihydorouridine synthases
C Methylthiotransferase
C Methyltransferases
D TTE0474 Gcd14; predicted SAM-dependent methyltransferase involved in tRNA-Met maturation K07442 TRM61; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit [EC:2.1.1.219 2.1.1.220]
C Psudouridine synthases
D TTE2258 TruA; Pseudouridylate synthase (tRNA psi55) K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D TTE1390 TruB; Pseudouridine synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
C Thiolation factors
D TTE2465 NifS2; Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D TTE1663 NifS; Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C KEOPS/EKC complex
C Elongator complex
C Elongator related proteins
C Other tRNA modification factors
D TTE0145 Sua5; putative translation factor (Sua5) K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D TTE1359 MiaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D TTE2796 ThdF; predicted GTPase K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D TTE1110 GidA; NAD/FAD-utilizing enzyme apparently involved in cell division K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D TTE2795 GidA2; NAD/FAD-utilizing enzyme apparently involved in cell division K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D TTE1873 SelD; Selenophosphate synthase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
B tRNA degradation factors
C TRAMP complex
C Rapid tRNA decay (RTD) pathway factors
C Other tRNA degradation factors
#
AProkaryotic type
B 5'processing factors
C Ribonucrease P
D TTE2801 RnpA; RNase P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
B 3'processing and CCA adding factors
C 3'processing factors
D TTE0618 Rph; RNase PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
C CCA adding factors
D TTE1322 PcnB2; tRNA nucleotidyltransferase/poly(A) polymerase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
B tRNA spricing factors
C tRNA splicing endonucleases
C tRNA splicing ligases
D TTE0709 RtcB; conserved hypothetical protein K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
C Other tRNA splicing factors
D TTE1518 LigT; 3'-5' RNA Ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
B tRNA transport factors
C tRNA export factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D TTE0324 LeuS; Leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D TTE2319 ProS; Prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
C Other AARSs
D TTE2679 TyrS; Tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D TTE1453 TrpS; Tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D TTE1713 ThrS; Threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D TTE1594 IleS; Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D TTE2372 LysU; Lysyl-tRNA synthetase class II K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D TTE1248 AlaS; Alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D TTE0934 predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D TTE0781 ValS; Valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D TTE0110 MetG; Methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D TTE0025 SerS; Seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D TTE1231 AspS; Aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D TTE2315 CysS; Cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D TTE0929 GlnS; Glutamyl- and glutaminyl-tRNA synthetases K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D TTE2533 ArgS; Arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D TTE1689 PheS; Phenylalanyl-tRNA synthetase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D TTE1688 PheT; Phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D TTE1230 HisS; Histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D TTE2317 GlnS2; Glutamyl- and glutaminyl-tRNA synthetases K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]
C Trans-editing factors
D TTE1196 Dtd; D-Tyr-tRNAtyr deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
B tRNA modification factors
C Deaminases
D TTE0037 Cytosine/adenosine deaminases K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
C Dihydorouridine synthases
D TTE0344 predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
C Methylthiotransferases
D TTE1356 MiaB2; 2-methylthioadenine synthetase K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D TTE0962 MiaB; 2-methylthioadenine synthetase K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5]
C Methyltransferases
D TTE1458 TrmD; tRNA-(guanine-N1)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D TTE2796 ThdF; predicted GTPase K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D TTE2630 SpoU3; rRNA methylase K00556 trmH; tRNA (guanosine-2'-O-)-methyltransferase [EC:2.1.1.34]
D TTE1754 predicted SAM-dependent methyltransferase K06967 trmK; tRNA (adenine22-N1)-methyltransferase [EC:2.1.1.217]
D TTE0253 CspR; predicted rRNA methylase (SpoU class) K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D TTE0102 SmtA; SAM-dependent methyltransferases K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223]
D TTE1690 SpoU; rRNA methylase K03437 spoU; RNA methyltransferase, TrmH family
C Psudouridine synthases
D TTE2258 TruA; Pseudouridylate synthase (tRNA psi55) K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D TTE1390 TruB; Pseudouridine synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D TTE1780 RluA2; Pseudouridylate synthase, 23S RNA-specific K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
C Thiolation factors
D TTE1243 TrmU; predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D TTE2464 TrmU2; predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D TTE2470 MesJ4; predicted ATPase of the PP-loop superfamily implicated in cell cycle control K21947 ttuA; tRNA-5-methyluridine54 2-sulfurtransferase [EC:2.8.1.15]
D TTE0073 MesJ; predicted ATPase of the PP-loop superfamily implicated in cell cycle control K21947 ttuA; tRNA-5-methyluridine54 2-sulfurtransferase [EC:2.8.1.15]
D TTE1527 MesJ2; predicted ATPase of the PP-loop superfamily implicated in cell cycle control K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D TTE0081 SirA; predicted Transcriptional regulator K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D TTE2465 NifS2; Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D TTE1663 NifS; Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C KEOPS/EKC complex
C Other tRNA modification factors
D TTE1110 GidA; NAD/FAD-utilizing enzyme apparently involved in cell division K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D TTE2795 GidA2; NAD/FAD-utilizing enzyme apparently involved in cell division K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D TTE1359 MiaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D TTE1182 QueA; S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D TTE2368 6-pyruvoyl-tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D TTE1563 Enzyme related to GTP cyclohydrolase I K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D TTE1770 uncharacterized Fe-S protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D TTE0796 uncharacterized Fe-S protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D TTE1873 SelD; Selenophosphate synthase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D TTE1183 Tgt; Queuine/archaeosine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D TTE1662 ThiI; Thiamine biosynthesis ATP pyrophosphatase K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D TTE2395 MesJ3; predicted ATPase of the PP-loop superfamily implicated in cell cycle control K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D TTE0536 Inactive homologs of metal-dependent proteases, putative molecular chaperones K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D TTE0145 Sua5; putative translation factor (Sua5) K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D TTE0538 Qri7; Metal-dependent proteases with possible chaperone activity K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D TTE0535 predicted ATPase or kinase K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D TTE1483 conserved hypothetical protein K27343 tmcAL; tRNA(Met) cytidine acetate ligase [EC:6.3.4.-]
B tRNA degradation factors
C TTE0983 VacB; Exoribonucleases K12573 rnr; ribonuclease R [EC:3.1.13.1]
C TTE1387 Pnp; Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: February 29, 2024