+E Transcription factors KO
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Transcription Factors - Vibrio cholerae O1 O395
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D VC0395_1029 putative site-specific DNA-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D VC0395_A0363 tcpN_toxT; TCP pilus virulence regulatory protein K10923 tcpN; AraC family transcriptional regulator, TCP pilus virulence regulatory protein
D VC0395_A1666 transcriptional regulator, AraC/XylS family K19693 tfoS; AraC family transcriptional regulator, chitin signaling transcriptional activator
D VC0395_0222 transcriptional regulator, Ada family/DNA-3-methyladenine glycosylase II K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
C LysR family
D VC0395_A0418 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D VC0395_A2549 ilvY; transcriptional activator IlvY K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D VC0395_A1309 metR; transcriptional activator MetR K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D VC0395_A0209 nhaR; transcriptional activator protein NhaR K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D VC0395_A1183 transcriptional regulator, LysR family K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D VC0395_A2213 transcriptional regulator, LysR family K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D VC0395_A0265 transcriptional regulator, LysR family K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D VC0395_A0034 iciA; chromosome initiation inhibitor K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D VC0395_A2061 transcriptional regulator, LysR family K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon
D VC0395_A0567 transcriptional regulator, LysR family K10918 aphB; LysR family transcriptional regulator, transcriptional activator AphB
D VC0395_A1497 cysB; cys regulon transcriptional activator K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D VC0395_0361 dsdC; D-serine deaminase activator K13636 dsdC; LysR family transcriptional regulator, D-serine deaminase activator
D VC0395_0220 transcriptional regulator, LysR family K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
C DeoR family
D VC0395_A1159 glpR; glycerol-3-phosphate regulon repressor K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D VC0395_0299 transcriptional regulator, DeoR family K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D VC0395_0982 transcriptional regulator, DeoR family K03477 ulaR; DeoR family transcriptional regulator, ulaG and ulaABCDEF operon transcriptional repressor
C LacI family
D VC0395_A1916 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D VC0395_0006 rbsR; ribose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D VC0395_A1164 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D VC0395_A2250 transcriptional repressor, LacI family K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D VC0395_0452 fruR; fructose repressor K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D VC0395_0598 putative sucrose operon repressor ScrR K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
D VC0395_A0431 treR; trehalose operon repressor K03485 treR; LacI family transcriptional regulator, trehalose operon repressor
D VC0395_A1324 transcriptional regulator, LacI family K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
D VC0395_A2667 gntR; gluconate utilization system gnt-I transcriptional repressor K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
C GntR family
D VC0395_A0826 hutC; histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D VC0395_A1490 fadR; fatty acid metabolism regulator protein K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D VC0395_A1991 pdhR; pyruvate dehydrogenase complex repressor K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
C TetR/AcrR family
D VC0395_A2554 transcriptional regulator, TetR family K18136 acrR; TetR/AcrR family transcriptional regulator, multidrug resistance operon repressor
D VC0395_A2593 transcriptional regulator, TetR family K05501 slmA; TetR/AcrR family transcriptional regulator
D VC0395_A0115 hemagglutinin/protease regulatory protein K10913 hapR; TetR/AcrR family transcriptional regulator, hemagglutinin/protease regulatory protein
D VC0395_A0116 hemagglutinin/protease regulatory protein K10913 hapR; TetR/AcrR family transcriptional regulator, hemagglutinin/protease regulatory protein
D VC0395_A1346 transcriptional regulator, TetR family K19736 aefR; TetR/AcrR family transcriptional regulator, regulator of autoinduction and epiphytic fitness
D VC0395_0530 conserved hypothetical protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D VC0395_A2369 transcriptional regulator, TetR family K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
C Lrp/AsnC family
D VC0395_A2443 asnC; transcriptional regulator AsnC K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D VC0395_A1494 lrp; leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D VC0395_0174 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D VC0395_A1316 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D VC0395_A0580 transcriptional regulator, AsnC family K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
C LuxR family
D VC0395_A2814 transcriptional regulator, LuxR family K04333 csgD; LuxR family transcriptional regulator, csgAB operon transcriptional regulatory protein
D VC0395_0287 transcriptional regulator, LuxR family K20918 vpsT; LuxR family transcriptional regulator, positive regulator of biofilm formation
D VC0395_0120 malT; malT regulatory protein K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
C MarR family
D VC0395_0232 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D VC0395_A0495 transcriptional regulator, MerR family K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D VC0395_A2655 transcriptional regulator, MerR family K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA
D VC0395_0056 soxR; soxR protein K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
D VC0395_0081 transcriptional regulator, MerR family K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator
C Fur family
D VC0395_A1690 fur; ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D VC0395_A2788 putative zinc uptake regulation protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
C IclR family
C CRP/FNR family
D VC0395_A2191 cyclic AMP receptor protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D VC0395_A1045 fnr; fumarate and nitrate reduction regulatory protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
C Rrf2 family
D VC0395_A0276 conserved hypothetical protein K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
C ArsR family
D VC0395_A0586 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D VC0395_A0210 hlyU; transcriptional activator HlyU K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator
C XRE family
D VC0395_A1555 transcriptional regulator, HTH_3 family K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
C PadR family
D VC0395_A2223 conserved hypothetical protein K10917 aphA; PadR family transcriptional regulator, regulatory protein AphA
C Other families
D VC0395_A2584 conserved hypothetical protein K15835 murR; RpiR family transcriptional regulator, murPQ operon repressor
D VC0395_A0718 conserved hypothetical protein K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D VC0395_A2717 birA; birA bifunctional protein K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D VC0395_A2685 fis; factor-for-inversion stimulation protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D VC0395_A0231 putative trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor
D VC0395_A0788 conserved domain protein K07724 ner; Ner family transcriptional regulator
D VC0395_A0649 conserved domain protein K07724 ner; Ner family transcriptional regulator
D VC0395_0521 conserved hypothetical protein K11925 sgrR; SgrR family transcriptional regulator
D VC0395_A1721 flrA; flagellar regulatory protein A K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D VC0395_A0196 sigma-54 dependent transcriptional regulator K20919 vpsR; sigma-54 dependent transcriptional regulator, positive regulator of biofilm formation
D VC0395_A1413 sigma-54 dependent transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D VC0395_0020 sigma-54 dependent transcriptional regulator K11908 vasH; sigma-54 dependent transcriptional regulator
D VC0395_1095 sigma-54 dependent transcriptional regulator K12266 norR; anaerobic nitric oxide reductase transcription regulator
D VC0395_0332 conserved hypothetical protein K02647 cdaR; carbohydrate diacid regulator
D VC0395_0803 conserved hypothetical protein K07726 K07726; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
D VC0395_A2255 metJ; met repressor K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
D VC0395_0169 putA; proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
C Others
D VC0395_A1885 bolA; bolA protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D VC0395_0131 ParB family protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D VC0395_A2520 ParB family protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D VC0395_A0511 putative transcriptional activator RfaH K05785 rfaH; transcriptional antiterminator RfaH
D VC0395_A2849 argR; arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D VC0395_A0514 nagC; N-acetylglucosamine repressor K02565 nagC; N-acetylglucosamine repressor
D VC0395_A1593 transcriptional regulator, ROK family K15545 mlc; transcriptional regulator of PTS gene
D VC0395_0194 mtlR; mannitol operon repressor K02562 mtlR; mannitol operon repressor
D VC0395_A0926 tyrR; transcriptional regulator TyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D VC0395_A2656 putative transcriptional activator CadC K03765 cadC; transcriptional activator of cad operon
D VC0395_A1739 putative glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor
D VC0395_A1284 pspF; psp operon transcriptional activator K03974 pspF; psp operon transcriptional activator
D VC0395_A1281 pspC; phage shock protein C K03973 pspC; phage shock protein C
D VC0395_0549 regulator of nucleoside diphosphate kinase K06140 rnk; regulator of nucleoside diphosphate kinase
D VC0395_A1382 transcriptional regulator K07733 alpA; prophage regulatory protein
D VC0395_A1406 putative transcriptional regulator K07733 alpA; prophage regulatory protein
D VC0395_A2683 phage transcriptional regulator, AlpA K07733 alpA; prophage regulatory protein
D VC0395_A0019 conserved hypothetical protein K07735 algH; putative transcriptional regulator
D VC0395_A0127 dksA; dnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D VC0395_A0669 conserved domain protein K06204 dksA; RNA polymerase-binding transcription factor
D VC0395_A0768 conserved domain protein K06204 dksA; RNA polymerase-binding transcription factor
D VC0395_A1862 nrdR; transcriptional regulator, NrdR family K07738 nrdR; transcriptional repressor NrdR
D VC0395_A1865 crl; transcriptional regulator Crl K11926 crl; sigma factor-binding protein Crl
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 8, 2024
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Classification taken and modified from TRANSFAC 7.0