+D GENES KO
#
KEGG Orthology (KO) - Aliivibrio fischeri MJ11
%
!
A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:vfm00010]
D VFMJ11_0291 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D VFMJ11_2462 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D VFMJ11_0252 fbp; fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D VFMJ11_0200 glpX; fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D VFMJ11_0443 fbaA; fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D VFMJ11_0197 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D VFMJ11_0951 gap_1; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D VFMJ11_0442 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D VFMJ11_0193 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D VFMJ11_2181 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D VFMJ11_2370 pyk_1; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D VFMJ11_A0541 pyk_2; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D VFMJ11_1325 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D VFMJ11_2294 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D VFMJ11_2293 aceF; dihydrolipoyllysine-residue acetyltransferase E2 component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D VFMJ11_2413 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D VFMJ11_2292 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D VFMJ11_0663 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D VFMJ11_0659 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D VFMJ11_0957 aldehyde-alcohol dehydrogenase 2 K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D VFMJ11_1266 1,3-propanediol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D VFMJ11_2503 acsA; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D VFMJ11_A0393 galM; galactose mutarotase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D VFMJ11_0854 pgm; phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D VFMJ11_0950 aldose 1-epimerase K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15]
D VFMJ11_2601 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D VFMJ11_A1084 6-phospho-beta-glucosidase AscB K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D VFMJ11_0619 beta-glucosidase A K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D VFMJ11_2031 pts system N-acetylglucosamine-specific eiicba component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D VFMJ11_1859 ptsG; pts system, glucose-specific iibc component K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199]
D VFMJ11_1846 malX; pts system, maltose and glucose-specific iibc component K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]
D VFMJ11_A0911 pts system glucose-specific eiicba component K20118 ptsG; glucose PTS system EIICBA or EIICB component [EC:2.7.1.199]
D VFMJ11_A1083 pts system arbutin-, cellobiose-, and salicin-specific eiibc component K02753 ascF; beta-glucoside (arbutin/salicin/cellobiose) PTS system EIICB component [EC:2.7.1.-]
C 00020 Citrate cycle (TCA cycle) [PATH:vfm00020]
D VFMJ11_0856 gltA; citrate (Si)-synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D VFMJ11_2266 acnB; aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D VFMJ11_1902 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D VFMJ11_0861 sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D VFMJ11_0862 sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D VFMJ11_2413 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D VFMJ11_2292 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D VFMJ11_0864 succinyl-CoA ligase (ADP-forming) subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D VFMJ11_0863 succinyl-CoA synthetase beta chain K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D VFMJ11_0859 sdhA; succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D VFMJ11_0860 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D VFMJ11_0857 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D VFMJ11_0858 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D VFMJ11_2456 frdA; fumarate reductase, flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D VFMJ11_2457 fumarate reductase iron-sulfur subunit K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D VFMJ11_2458 fumarate reductase subunit C K00246 frdC; succinate dehydrogenase subunit C
D VFMJ11_2459 fumarate reductase subunit D K00247 frdD; succinate dehydrogenase subunit D
D VFMJ11_1256 fumarate hydratase K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D VFMJ11_A0089 transcriptional regulator K01774 fumE; fumarate hydratase E [EC:4.2.1.2]
D VFMJ11_0264 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D VFMJ11_2601 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D VFMJ11_2294 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D VFMJ11_2293 aceF; dihydrolipoyllysine-residue acetyltransferase E2 component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
C 00030 Pentose phosphate pathway [PATH:vfm00030]
D VFMJ11_0291 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D VFMJ11_A0518 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D VFMJ11_A0519 pgl; 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31]
D VFMJ11_A0520 gnd; 6-phosphogluconate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D VFMJ11_2400 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D VFMJ11_0440 tkt_1; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D VFMJ11_A0773 tkt_2; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D VFMJ11_A0772 tal; transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D VFMJ11_2210 rpiA; ribose 5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D VFMJ11_0506 deoC; deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D VFMJ11_1544 rbsK; ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15]
D VFMJ11_0508 deoB; phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D VFMJ11_0854 pgm; phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D VFMJ11_0800 ribose-Phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D VFMJ11_A1080 edd; phosphogluconate dehydratase K01690 edd; phosphogluconate dehydratase [EC:4.2.1.12]
D VFMJ11_0088 khg/kdpg aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D VFMJ11_A1106 khg/kdpg aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D VFMJ11_A1082 khg/kdpg aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D VFMJ11_A1081 aroK_2; shikimate kinase K00851 idnK; gluconokinase [EC:2.7.1.12]
D VFMJ11_A1107 2-dehydro-3-deoxygluconokinase K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]
D VFMJ11_0443 fbaA; fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D VFMJ11_0252 fbp; fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D VFMJ11_0200 glpX; fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D VFMJ11_2462 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C 00040 Pentose and glucuronate interconversions [PATH:vfm00040]
D VFMJ11_A1117 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase K01815 kduI; 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [EC:5.3.1.17]
D VFMJ11_A1116 kduD; 2-deoxy-D-gluconate 3-dehydrogenase K00065 kduD; 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase [EC:1.1.1.127]
D VFMJ11_0190 udp-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D VFMJ11_0333 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D VFMJ11_2400 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
C 00051 Fructose and mannose metabolism [PATH:vfm00051]
D VFMJ11_A0799 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D VFMJ11_1129 phosphoglucomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D VFMJ11_2462 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D VFMJ11_0252 fbp; fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D VFMJ11_0200 glpX; fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D VFMJ11_A0088 L-sorbose 1-phosphate reductase K19956 sorE; L-sorbose 1-phosphate reductase [EC:1.1.1.-]
D VFMJ11_A1059 pfkB; 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D VFMJ11_0443 fbaA; fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D VFMJ11_0197 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D VFMJ11_A0406 PTS system, fructose-specific IIA component K02768 fruB; fructose PTS system EIIA component [EC:2.7.1.202]
D VFMJ11_A0801 pts system, fructose specific iibc component K02769 fruAb; fructose PTS system EIIB component [EC:2.7.1.202]
D VFMJ11_A1058 pts system fructose-specific eiibc component K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D VFMJ11_A0086 mannitol-specific cryptic phosphotransferase enzyme iia component K02798 cmtB; mannitol PTS system EIIA component [EC:2.7.1.197]
D VFMJ11_A0087 pts system mannitol-specific eiicba component K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]
C 00052 Galactose metabolism [PATH:vfm00052]
D VFMJ11_A0393 galM; galactose mutarotase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D VFMJ11_A0392 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D VFMJ11_A0391 galT; galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D VFMJ11_A0390 galE_1; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D VFMJ11_0192 galE_2; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D VFMJ11_0333 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D VFMJ11_0854 pgm; phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D VFMJ11_A0385 evolved beta-galactosidase subunit alpha (Lactase) K12111 ebgA; evolved beta-galactosidase subunit alpha [EC:3.2.1.23]
D VFMJ11_A0383 evolved beta-galactosidase beta-subunit K12112 ebgC; evolved beta-galactosidase subunit beta
D VFMJ11_A0339 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D VFMJ11_2462 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D VFMJ11_A1108 class II aldolase, tagatose bisphosphate family K08302 gatY-kbaY; tagatose 1,6-diphosphate aldolase GatY/KbaY [EC:4.1.2.40]
D VFMJ11_A1124 D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit K16371 gatZ-kbaZ; D-tagatose-1,6-bisphosphate aldolase subunit GatZ/KbaZ
D VFMJ11_A0040 galactonate dehydratase K01684 dgoD; galactonate dehydratase [EC:4.2.1.6]
D VFMJ11_A0035 2-keto-3-deoxy-galactonokinase K00883 dgoK; 2-dehydro-3-deoxygalactonokinase [EC:2.7.1.58]
D VFMJ11_A0036 2-dehydro-3-deoxy-6-phosphogalactonate aldolase K01631 dgoA; 2-dehydro-3-deoxyphosphogalactonate aldolase [EC:4.1.2.21]
D VFMJ11_A0853 oligo-1,6-glucosidase K01182 IMA; oligo-1,6-glucosidase [EC:3.2.1.10]
D VFMJ11_A1119 PTS system, N-acetylgalactosamine-specific IIA component K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-]
D VFMJ11_A1122 N-acetylgalactosamine-specific phosphotransferase enzyme iib component2 K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-]
D VFMJ11_A1121 PTS system, N-acetylgalactosamine-specific IIC component K02746 agaW; N-acetylgalactosamine PTS system EIIC component
D VFMJ11_A1120 PTS system, N-acetylgalactosamine-specific IID component K02747 agaE; N-acetylgalactosamine PTS system EIID component
D VFMJ11_A1118 nagA_3; N-acetylglucosamine-6-phosphate deacetylase K02079 agaA; N-acetylgalactosamine-6-phosphate deacetylase [EC:3.5.1.25]
D VFMJ11_A1123 putative tagatose-6-phosphate ketose/aldose isomerase K02082 agaS; D-galactosamine 6-phosphate deaminase/isomerase [EC:3.5.99.-]
C 00053 Ascorbate and aldarate metabolism [PATH:vfm00053]
D VFMJ11_0190 udp-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D VFMJ11_0184 UDP-glucuronate 5'-epimerase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D VFMJ11_A0157 PTS system, 3-keto-L-gulonate specific IIA component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D VFMJ11_A0155 PTS system, IIB component K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D VFMJ11_A0156 ascorbate-specific PTS system enzyme IIC K03475 ulaA; ascorbate PTS system EIIC component
C 00500 Starch and sucrose metabolism [PATH:vfm00500]
D VFMJ11_0333 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D VFMJ11_A1003 celA; cellulose synthase catalytic subunit (UDP-forming) K00694 bcsA; cellulose synthase (UDP-forming) [EC:2.4.1.12]
D VFMJ11_0621 lichenan-specific phosphotransferase enzyme iia component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D VFMJ11_0618 BglE K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D VFMJ11_0617 lichenan permease iic component K02761 celB; cellobiose PTS system EIIC component
D VFMJ11_A1084 6-phospho-beta-glucosidase AscB K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D VFMJ11_0619 beta-glucosidase A K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D VFMJ11_A0933 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D VFMJ11_A0932 glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21]
D VFMJ11_A0935 glgB; 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D VFMJ11_A0937 maltodextrin phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D VFMJ11_0017 alpha-amylase K01176 AMY; alpha-amylase [EC:3.2.1.1]
D VFMJ11_1206 alpha-amylase (1,4-alpha-D-glucanglucanohydrolase) K01176 AMY; alpha-amylase [EC:3.2.1.1]
D VFMJ11_2152 neopullulanase K01208 cd; cyclomaltodextrinase / maltogenic alpha-amylase / neopullulanase [EC:3.2.1.54 3.2.1.133 3.2.1.135]
D VFMJ11_A0853 oligo-1,6-glucosidase K01182 IMA; oligo-1,6-glucosidase [EC:3.2.1.10]
D VFMJ11_A0936 malQ; 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25]
D VFMJ11_2031 pts system N-acetylglucosamine-specific eiicba component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D VFMJ11_1846 malX; pts system, maltose and glucose-specific iibc component K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]
D VFMJ11_A0928 glgX; glycogen debranching enzyme GlgX K01214 ISA; isoamylase [EC:3.2.1.68]
D VFMJ11_0854 pgm; phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D VFMJ11_0291 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:vfm00520]
D VFMJ11_0673 endochitinase K01183 E3.2.1.14; chitinase [EC:3.2.1.14]
D VFMJ11_1708 chitinase A K01183 E3.2.1.14; chitinase [EC:3.2.1.14]
D VFMJ11_A0540 beta-hexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D VFMJ11_A1128 chitobiase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D VFMJ11_2254 beta-hexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D VFMJ11_2255 cellobiose-phosphorylase K18675 chbP; N,N'-diacetylchitobiose phosphorylase [EC:2.4.1.280]
D VFMJ11_2031 pts system N-acetylglucosamine-specific eiicba component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D VFMJ11_0846 nagE_1; pts system, N-acetylglucosamine-specific iibc component K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D VFMJ11_A0487 nagE_2; pts system, N-acetylglucosamine-specific iibc component K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D VFMJ11_1498 N-acetyl-D-glucosamine kinase K00884 NAGK; N-acetylglucosamine kinase [EC:2.7.1.59]
D VFMJ11_0845 nagA_2; N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
D VFMJ11_0683 nagA_1; N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
D VFMJ11_2478 nagB; glucosamine-6-phosphate isomerase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6]
D VFMJ11_2253 N-acetylglucosamine kinase K18676 gspK; glucosamine kinase [EC:2.7.1.8]
D VFMJ11_2493 glmS; glutamine-fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D VFMJ11_0481 glmM; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D VFMJ11_2697 glmU; UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D VFMJ11_1193 pts system N-acetylmuramic acid-specific eiibc component K11192 murP; N-acetylmuramic acid PTS system EIICB component [EC:2.7.1.192]
D VFMJ11_1192 murQ; N-acetylmuramic acid 6-phosphate etherase K07106 murQ; N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126]
D VFMJ11_A0539 anmK; anhydro-N-acetylmuramic acid kinase K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170]
D VFMJ11_0391 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D VFMJ11_2545 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D VFMJ11_0685 putative N-acetylmannosamine kinase K00885 nanK; N-acylmannosamine kinase [EC:2.7.1.60]
D VFMJ11_0684 bifunctional enzyme NanE/nanK K01788 nanE; N-acylglucosamine-6-phosphate 2-epimerase [EC:5.1.3.9]
D VFMJ11_0681 N-acetylneuraminate lyase (NALase) K01639 E4.1.3.3; N-acetylneuraminate lyase [EC:4.1.3.3]
D VFMJ11_0161 VI polysaccharide biosynthesis protein VipA/tviB K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-]
D VFMJ11_0171 pseB; UDP-N-acetylglucosamine 4,6-dehydratase K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-]
D VFMJ11_0174 FlmD K15897 pseG; UDP-2,4-diacetamido-2,4,6-trideoxy-beta-L-altropyranose hydrolase [EC:3.6.1.57]
D VFMJ11_0173 pseF; pseudaminic acid CMP-transferase K15899 pseF; pseudaminic acid cytidylyltransferase [EC:2.7.7.81]
D VFMJ11_1859 ptsG; pts system, glucose-specific iibc component K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199]
D VFMJ11_1846 malX; pts system, maltose and glucose-specific iibc component K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]
D VFMJ11_A0911 pts system glucose-specific eiicba component K20118 ptsG; glucose PTS system EIICBA or EIICB component [EC:2.7.1.199]
D VFMJ11_0854 pgm; phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D VFMJ11_0333 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D VFMJ11_0190 udp-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D VFMJ11_A0392 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D VFMJ11_A0391 galT; galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D VFMJ11_A0390 galE_1; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D VFMJ11_0192 galE_2; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D VFMJ11_0184 UDP-glucuronate 5'-epimerase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D VFMJ11_0291 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D VFMJ11_A0799 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D VFMJ11_1129 phosphoglucomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D VFMJ11_A0933 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
C 00620 Pyruvate metabolism [PATH:vfm00620]
D VFMJ11_2503 acsA; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D VFMJ11_2294 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D VFMJ11_2293 aceF; dihydrolipoyllysine-residue acetyltransferase E2 component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D VFMJ11_2413 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D VFMJ11_2292 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D VFMJ11_1700 pflB_1; formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D VFMJ11_A0177 pflB_2; formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D VFMJ11_0957 aldehyde-alcohol dehydrogenase 2 K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D VFMJ11_1266 1,3-propanediol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D VFMJ11_0663 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D VFMJ11_0659 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D VFMJ11_0875 ackA_1; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D VFMJ11_A0921 ackA_2; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D VFMJ11_0874 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D VFMJ11_2370 pyk_1; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D VFMJ11_A0541 pyk_2; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D VFMJ11_2080 accA; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D VFMJ11_2505 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D VFMJ11_2506 accC; acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D VFMJ11_1820 accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D VFMJ11_1595 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D VFMJ11_1128 D-lactate dehydrogenase K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28]
D VFMJ11_1293 lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D VFMJ11_A0148 gloA_2; lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D VFMJ11_0967 gloA_1; lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D VFMJ11_2073 gloB; hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D VFMJ11_1272 metallo-beta-lactamase superfamily protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D VFMJ11_1654 NAD-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D VFMJ11_2384 NADP-dependent malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D VFMJ11_0551 oadA; oxaloacetate decarboxylase alpha subunit K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2]
D VFMJ11_0552 oxaloacetate decarboxylase beta chain K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D VFMJ11_0550 sodium pump decarboxylase, gamma subunit K01573 oadG; oxaloacetate decarboxylase (Na+ extruding) subunit gamma
D VFMJ11_0264 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D VFMJ11_1256 fumarate hydratase K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D VFMJ11_A0089 transcriptional regulator K01774 fumE; fumarate hydratase E [EC:4.2.1.2]
D VFMJ11_2456 frdA; fumarate reductase, flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D VFMJ11_2457 fumarate reductase iron-sulfur subunit K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D VFMJ11_2458 fumarate reductase subunit C K00246 frdC; succinate dehydrogenase subunit C
D VFMJ11_2459 fumarate reductase subunit D K00247 frdD; succinate dehydrogenase subunit D
D VFMJ11_2420 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D VFMJ11_2601 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D VFMJ11_1325 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D VFMJ11_2107 aceB; malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9]
D VFMJ11_0283 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:vfm00630]
D VFMJ11_2106 aceA; isocitrate lyase K01637 E4.1.3.1; isocitrate lyase [EC:4.1.3.1]
D VFMJ11_2503 acsA; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D VFMJ11_2107 aceB; malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9]
D VFMJ11_0264 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D VFMJ11_0856 gltA; citrate (Si)-synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D VFMJ11_2266 acnB; aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D VFMJ11_2158 catalase K03781 katE; catalase [EC:1.11.1.6]
D VFMJ11_A0023 catalase K03781 katE; catalase [EC:1.11.1.6]
D VFMJ11_2399 gph; phosphoglycolate phosphatase, bacterial K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D VFMJ11_0330 serine--pyruvate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D VFMJ11_0096 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D VFMJ11_0715 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D VFMJ11_A0790 gcvP; glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D VFMJ11_A0787 gcvT; glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D VFMJ11_2413 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D VFMJ11_2292 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D VFMJ11_A0789 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D VFMJ11_2265 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D VFMJ11_0088 khg/kdpg aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D VFMJ11_A1106 khg/kdpg aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D VFMJ11_A1082 khg/kdpg aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D VFMJ11_1441 molybdopterin oxidoreductase K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D VFMJ11_A0285 putative formate dehydrogenase K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D VFMJ11_1440 formate dehydrogenase iron-sulfur subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D VFMJ11_1439 formate dehydrogenase, cytochrome B556 subunit K00127 fdoI; formate dehydrogenase subunit gamma
D VFMJ11_1840 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
C 00640 Propanoate metabolism [PATH:vfm00640]
D VFMJ11_2503 acsA; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D VFMJ11_0875 ackA_1; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D VFMJ11_A0921 ackA_2; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D VFMJ11_0874 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D VFMJ11_2413 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D VFMJ11_2292 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D VFMJ11_1700 pflB_1; formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D VFMJ11_A0177 pflB_2; formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D VFMJ11_0022 protein YhdH K19745 acuI; acrylyl-CoA reductase (NADPH) [EC:1.3.1.-]
D VFMJ11_0024 fadB; fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D VFMJ11_1943 fadJ; fatty oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D VFMJ11_2080 accA; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D VFMJ11_2505 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D VFMJ11_2506 accC; acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D VFMJ11_1820 accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D VFMJ11_0863 succinyl-CoA synthetase beta chain K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D VFMJ11_0864 succinyl-CoA ligase (ADP-forming) subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D VFMJ11_2266 acnB; aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D VFMJ11_1735 mgsA; methylglyoxal synthase K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3]
D VFMJ11_1802 alcohol dehydrogenase YqhD K08325 yqhD; NADP-dependent alcohol dehydrogenase [EC:1.1.-.-]
C 00650 Butanoate metabolism [PATH:vfm00650]
D VFMJ11_0024 fadB; fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D VFMJ11_1943 fadJ; fatty oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D VFMJ11_0926 trans-2-enoyl-CoA reductase K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D VFMJ11_0957 aldehyde-alcohol dehydrogenase 2 K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D VFMJ11_0552 oxaloacetate decarboxylase beta chain K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D VFMJ11_0859 sdhA; succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D VFMJ11_0860 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D VFMJ11_0857 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D VFMJ11_0858 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D VFMJ11_2456 frdA; fumarate reductase, flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D VFMJ11_2457 fumarate reductase iron-sulfur subunit K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D VFMJ11_2458 fumarate reductase subunit C K00246 frdC; succinate dehydrogenase subunit C
D VFMJ11_2459 fumarate reductase subunit D K00247 frdD; succinate dehydrogenase subunit D
D VFMJ11_1137 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D VFMJ11_1700 pflB_1; formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D VFMJ11_A0177 pflB_2; formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D VFMJ11_2375 ilvB_1; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D VFMJ11_2691 ilvB_2; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D VFMJ11_2374 ilvN; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D VFMJ11_2692 acetolactate synthase small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:vfm00660]
D VFMJ11_2375 ilvB_1; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D VFMJ11_2691 ilvB_2; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D VFMJ11_2374 ilvN; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D VFMJ11_2692 acetolactate synthase small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D VFMJ11_0863 succinyl-CoA synthetase beta chain K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D VFMJ11_0864 succinyl-CoA ligase (ADP-forming) subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D VFMJ11_0281 leuC; 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D VFMJ11_0280 leuD; 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D VFMJ11_0282 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:vfm00562]
D VFMJ11_0628 inositol-1-monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D VFMJ11_0197 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:vfm00190]
D VFMJ11_1218 NADH dehydrogenase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D VFMJ11_2486 NADH dehydrogenase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D VFMJ11_0859 sdhA; succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D VFMJ11_0860 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D VFMJ11_0857 sdhC; succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D VFMJ11_0858 sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D VFMJ11_2456 frdA; fumarate reductase, flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D VFMJ11_2457 fumarate reductase iron-sulfur subunit K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D VFMJ11_2458 fumarate reductase subunit C K00246 frdC; succinate dehydrogenase subunit C
D VFMJ11_2459 fumarate reductase subunit D K00247 frdD; succinate dehydrogenase subunit D
D VFMJ11_2331 petA; ubiquinol-Cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D VFMJ11_2330 cytochrome B K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D VFMJ11_2329 cytochrome c1 K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D VFMJ11_1377 ccoN; cytochrome c oxidase, Cbb3-type, subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9]
D VFMJ11_1378 ccoO; cytochrome c oxidase, Cbb3-type, subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II
D VFMJ11_1379 ccoQ; cytochrome c oxidase, Cbb3-type, CcoQ subunit K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV
D VFMJ11_1380 ccoP; cytochrome c oxidase, Cbb3-type, subunit III K00406 ccoP; cytochrome c oxidase cbb3-type subunit III
D VFMJ11_0994 cytochrome D ubiquinol oxidase subunit 1 K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D VFMJ11_0995 cydB; cytochrome D ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D VFMJ11_2701 atpA; ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D VFMJ11_2699 atpD; ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D VFMJ11_2700 atpG; ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D VFMJ11_2702 atpH; ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D VFMJ11_2698 atpC; ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D VFMJ11_2705 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D VFMJ11_2703 atpF; ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D VFMJ11_2704 ATP synthase C chain (Lipid-binding protein) K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D VFMJ11_A0469 manganese-dependent inorganic pyrophosphatase K15986 ppaC; manganese-dependent inorganic pyrophosphatase [EC:3.6.1.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation in photosynthetic organisms
C 00720 Carbon fixation pathways in prokaryotes
C 00680 Methane metabolism [PATH:vfm00680]
D VFMJ11_A0021 gfa; S-(hydroxymethyl)glutathione synthase K03396 gfa; S-(hydroxymethyl)glutathione synthase [EC:4.4.1.22]
D VFMJ11_0663 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D VFMJ11_0659 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D VFMJ11_0658 fghA; S-formylglutathione hydrolase K01070 frmB; S-formylglutathione hydrolase [EC:3.1.2.12]
D VFMJ11_1441 molybdopterin oxidoreductase K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D VFMJ11_A0285 putative formate dehydrogenase K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D VFMJ11_1440 formate dehydrogenase iron-sulfur subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D VFMJ11_1439 formate dehydrogenase, cytochrome B556 subunit K00127 fdoI; formate dehydrogenase subunit gamma
D VFMJ11_0715 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D VFMJ11_0330 serine--pyruvate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D VFMJ11_2181 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D VFMJ11_2420 ppc; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D VFMJ11_0264 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D VFMJ11_0443 fbaA; fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D VFMJ11_0252 fbp; fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D VFMJ11_0200 glpX; fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D VFMJ11_2462 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D VFMJ11_A0336 torA; trimethylamine-N-oxide reductase TorA K07811 torA; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D VFMJ11_A0335 torC; trimethylamine-N-oxide reductase c-type cytochrome TorC K03532 torC; trimethylamine-N-oxide reductase (cytochrome c), cytochrome c-type subunit TorC
D VFMJ11_1674 chaperone protein TorD K03533 torD; TorA specific chaperone
D VFMJ11_A0223 cytoChrome c-type protein TorY K07821 torY; trimethylamine-N-oxide reductase (cytochrome c), cytochrome c-type subunit TorY
D VFMJ11_A1109 biotin sulfoxide reductase K07812 torZ; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D VFMJ11_A0222 trimethylamiNe-n-oxide reductase 2 K07812 torZ; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D VFMJ11_0875 ackA_1; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D VFMJ11_A0921 ackA_2; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D VFMJ11_0874 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D VFMJ11_2503 acsA; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D VFMJ11_1325 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D VFMJ11_0193 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D VFMJ11_2211 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D VFMJ11_0937 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D VFMJ11_0511 phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 00910 Nitrogen metabolism [PATH:vfm00910]
D VFMJ11_2039 napA; periplasmic nitrate reductase, large subunit K02567 napA; nitrate reductase (cytochrome) [EC:1.9.6.1]
D VFMJ11_2038 napB; periplasmiC nitrate reductase, diheme cytochrome c subunit K02568 napB; nitrate reductase (cytochrome), electron transfer subunit
D VFMJ11_0812 nirB; nitrite reductase (NAD(P)H), large subunit K00362 nirB; nitrite reductase (NADH) large subunit [EC:1.7.1.15]
D VFMJ11_0811 nirD; nitrite reductase (NAD(P)H), small subunit K00363 nirD; nitrite reductase (NADH) small subunit [EC:1.7.1.15]
D VFMJ11_1649 nrfA; nitrite reductase (cytochrome; ammonia-forming) K03385 nrfA; nitrite reductase (cytochrome c-552) [EC:1.7.2.2]
D VFMJ11_A0998 hcp; hydroxylamine reductase K05601 hcp; hydroxylamine reductase [EC:1.7.99.1]
D VFMJ11_1362 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D VFMJ11_0096 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D VFMJ11_2230 ferredoxin-dependent glutamate synthase 1 K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D VFMJ11_2231 glutamate synthase, small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D VFMJ11_A1243 carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
D VFMJ11_2288 carbonate dehydratase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
D VFMJ11_1775 carbonic anhydrase (Carbonate dehydratase) K01674 cah; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:vfm00920]
D VFMJ11_0308 sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D VFMJ11_0307 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D VFMJ11_0310 cysC; adenylylsulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]
D VFMJ11_2585 cysQ; 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D VFMJ11_0299 cysH; phosphoadenosine phosphosulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]
D VFMJ11_0297 sulfite reductase (NADPH) flavoprotein, alpha-component K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]
D VFMJ11_0298 cysI; sulfite reductase (NADPH) hemoprotein, beta-component K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2]
D VFMJ11_1469 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D VFMJ11_A0124 thiosulfate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D VFMJ11_2572 thiosulfate sulfurtransferase GlpE K02439 glpE; thiosulfate sulfurtransferase [EC:2.8.1.1]
D VFMJ11_2468 serine acetyltransferase 4 K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D VFMJ11_0182 serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D VFMJ11_2028 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D VFMJ11_1682 cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D VFMJ11_2169 metA; homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D VFMJ11_2379 metB; O-succinylhomoserine (thiol)-lyase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D VFMJ11_A0106 anaerobic dimethyl sulfoxide reductase chain a K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3]
D VFMJ11_A0105 dmsB; dimethylsulfoxide reductase, chain B K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B
D VFMJ11_A0104 dmsC; DMSO reductase anchor subunit K07308 dmsC; anaerobic dimethyl sulfoxide reductase subunit C
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:vfm00061]
D VFMJ11_2080 accA; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D VFMJ11_2505 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D VFMJ11_2506 accC; acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D VFMJ11_1820 accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D VFMJ11_1866 acpP; acyl carrier protein K02078 acpP; acyl carrier protein
D VFMJ11_0884 acyl carrier protein K02078 acpP; acyl carrier protein
D VFMJ11_0885 acyl carrier protein K02078 acpP; acyl carrier protein
D VFMJ11_1868 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D VFMJ11_1869 3-oxoacyl-(acyl-carrier-protein) synthase 3 protein 1 K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D VFMJ11_0895 conserved hypothetical protein K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D VFMJ11_1826 3-oxoacyl-(acyl-carrier-protein) synthase 1 K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D VFMJ11_1865 fabF; 3-oxoacyl-(acyl-carrier-protein) synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D VFMJ11_0898 conserved hypothetical protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D VFMJ11_1867 fabG; 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D VFMJ11_0897 3-oxoacyl-(acyl-carrier-protein) reductase, putative K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D VFMJ11_1370 fabA; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D VFMJ11_2085 fabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D VFMJ11_0926 trans-2-enoyl-CoA reductase K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D VFMJ11_1834 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D VFMJ11_2368 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D VFMJ11_2376 putative long-chain-fatty-acid--CoA ligase family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D VFMJ11_0535 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:vfm00071]
D VFMJ11_1944 fadI; acetyl-CoA C-acyltransferase FadI K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D VFMJ11_0023 fadA; acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D VFMJ11_0024 fadB; fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D VFMJ11_1943 fadJ; fatty oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D VFMJ11_2067 acyl-coenzyme a dehydrogenase K06445 fadE; acyl-CoA dehydrogenase [EC:1.3.99.-]
D VFMJ11_1834 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D VFMJ11_2368 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D VFMJ11_2376 putative long-chain-fatty-acid--CoA ligase family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D VFMJ11_0535 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D VFMJ11_0663 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D VFMJ11_0659 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D VFMJ11_0957 aldehyde-alcohol dehydrogenase 2 K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D VFMJ11_1266 1,3-propanediol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis [PATH:vfm00121]
D VFMJ11_A0276 choloylglycine hydrolase K01442 cbh; choloylglycine hydrolase [EC:3.5.1.24]
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:vfm00561]
D VFMJ11_2265 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D VFMJ11_A0271 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D VFMJ11_2567 glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D VFMJ11_1870 plsX; fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D VFMJ11_2359 conserved hypothetical protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D VFMJ11_0392 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D VFMJ11_0409 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D VFMJ11_A0339 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
C 00564 Glycerophospholipid metabolism [PATH:vfm00564]
D VFMJ11_2469 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D VFMJ11_A0273 aerobic glycerol-3-phosphate dehydrogenase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D VFMJ11_A0284 glpA; glycerol-3-phosphate dehydrogenase, anaerobic, A subunit K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D VFMJ11_A0283 glpB; glycerol-3-phosphate dehydrogenase, anaerobic, B subunit K00112 glpB; glycerol-3-phosphate dehydrogenase subunit B [EC:1.1.5.3]
D VFMJ11_A0282 glpC; glycerol-3-phosphate dehydrogenase, anaerobic, C subunit K00113 glpC; glycerol-3-phosphate dehydrogenase subunit C
D VFMJ11_2567 glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D VFMJ11_2359 conserved hypothetical protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D VFMJ11_0392 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D VFMJ11_0409 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D VFMJ11_1652 phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
D VFMJ11_2604 lysophospholipase L2 K01048 pldB; lysophospholipase [EC:3.1.1.5]
D VFMJ11_A1074 glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D VFMJ11_2091 cdsA; phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D VFMJ11_2547 CDP-diacylglycerol--serine O-phosphatidyltransferase K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D VFMJ11_2453 psd; phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D VFMJ11_1745 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D VFMJ11_0726 pgpA; phosphatidylglycerophosphatase A K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27]
D VFMJ11_1639 phosphatidylglycerophosphatase B K01096 pgpB; phosphatidylglycerophosphatase B [EC:3.1.3.27 3.6.1.75 3.1.3.4 3.6.1.27]
D VFMJ11_1716 cardiolipin synthetase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
D VFMJ11_0903 cardiolipin synthetase K06132 clsC; cardiolipin synthase C [EC:2.7.8.-]
C 00565 Ether lipid metabolism [PATH:vfm00565]
D VFMJ11_1652 phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00600 Sphingolipid metabolism [PATH:vfm00600]
D VFMJ11_A0339 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D VFMJ11_A1128 chitobiase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D VFMJ11_2254 beta-hexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
C 00590 Arachidonic acid metabolism
D VFMJ11_1652 phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00591 Linoleic acid metabolism
D VFMJ11_1652 phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00592 alpha-Linolenic acid metabolism [PATH:vfm00592]
D VFMJ11_1652 phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
D VFMJ11_1944 fadI; acetyl-CoA C-acyltransferase FadI K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D VFMJ11_0023 fadA; acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01040 Biosynthesis of unsaturated fatty acids [PATH:vfm01040]
D VFMJ11_A0308 acyl-CoA desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D VFMJ11_A1165 arylesterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D VFMJ11_1680 tesB; acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
D VFMJ11_1337 acyl-CoA thioester hydrolase YciA K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
D VFMJ11_1107 acyl-CoA thioester hydrolase YciA K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:vfm00230]
D VFMJ11_2343 adp-ribose pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D VFMJ11_2586 ADP compounds hydrolase NudE K08312 nudE; ADP compounds hydrolase [EC:3.6.1.-]
D VFMJ11_0508 deoB; phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D VFMJ11_0854 pgm; phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D VFMJ11_0800 ribose-Phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D VFMJ11_1816 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D VFMJ11_2513 purD; phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D VFMJ11_2064 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D VFMJ11_1580 purT; phosphoribosylglycinamide formyltransferase 2 K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21]
D VFMJ11_0669 purL; phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
D VFMJ11_2063 purM; phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D VFMJ11_2669 purK; phosphoribosylaminoimidazole carboxylase, ATPase subunit K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D VFMJ11_2668 purE; phosphoribosylaminoimidazole carboxylase, catalytic subunit K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D VFMJ11_1591 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D VFMJ11_1914 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D VFMJ11_2512 purH; bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D VFMJ11_1812 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D VFMJ11_A0435 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D VFMJ11_0814 protein UshA K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D VFMJ11_2176 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D VFMJ11_A0987 acid phosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D VFMJ11_0949 inosine-guanosine kinase K00892 gsk; inosine kinase [EC:2.7.1.73]
D VFMJ11_A0783 inosine-guanosine kinase K00892 gsk; inosine kinase [EC:2.7.1.73]
D VFMJ11_0509 deoD_1; purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D VFMJ11_A0442 deoD_2; purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D VFMJ11_A1090 deoD_3; purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D VFMJ11_A0567 protein Mmc1_2532 K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2]
D VFMJ11_0577 conserved hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D VFMJ11_2290 hpt; hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D VFMJ11_0651 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D VFMJ11_0639 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D VFMJ11_0572 conserved hypothetical protein K01529 yjjX; inosine/xanthosine triphosphatase [EC:3.6.1.73]
D VFMJ11_0425 rdgB; non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D VFMJ11_0757 xanthine phosphoribosyltransferase K00769 gpt; xanthine phosphoribosyltransferase [EC:2.4.2.22]
D VFMJ11_0652 gmp synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D VFMJ11_A0782 guaC; guanosine monophosphate reductase K00364 guaC; GMP reductase [EC:1.7.1.7]
D VFMJ11_A1091 guaD; guanine deaminase K01487 guaD; guanine deaminase [EC:3.5.4.3]
D VFMJ11_0104 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D VFMJ11_1281 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D VFMJ11_1280 ribonucleoside-diphosphate reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D VFMJ11_A0317 nrdD; anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D VFMJ11_1806 deoxyguanosinetriphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1]
D VFMJ11_0102 GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D VFMJ11_0053 exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D VFMJ11_2185 GTP pyrophosphokinase K00951 relA; GTP pyrophosphokinase [EC:2.7.6.5]
D VFMJ11_0065 cyaA; adenylate cyclase, class I K05851 cyaA; adenylate cyclase, class 1 [EC:4.6.1.1]
D VFMJ11_1335 3',5'-cyclic-nucleotide phosphodiesterase K01120 cpdP; 3',5'-cyclic-nucleotide phosphodiesterase [EC:3.1.4.17]
D VFMJ11_2431 purA_2; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D VFMJ11_1135 purA_1; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D VFMJ11_0091 add; adenosine deaminase K01488 add; adenosine deaminase [EC:3.5.4.4]
D VFMJ11_0609 lysine decarboxylase family protein K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-]
D VFMJ11_0306 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D VFMJ11_1604 2',3'-cyclic-nucleotide 2'-phosphodiesterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D VFMJ11_0830 adenylate kinase (ATP-AMP transphosphorylase) K00939 adk; adenylate kinase [EC:2.7.4.3]
D VFMJ11_2183 MazG protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D VFMJ11_2341 3',5'-cyclic-nucleotide phosphodiesterase K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]
D VFMJ11_0273 bis(5'-nucleosyl)-tetraphosphatase K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41]
D VFMJ11_0310 cysC; adenylylsulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]
D VFMJ11_0308 sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D VFMJ11_0307 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D VFMJ11_0691 ureC; urease, alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D VFMJ11_0692 ureB; urease, beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5]
D VFMJ11_0693 ureA; urease, gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5]
D VFMJ11_A1243 carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
C 00240 Pyrimidine metabolism [PATH:vfm00240]
D VFMJ11_0473 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D VFMJ11_0472 carA; carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D VFMJ11_0396 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D VFMJ11_0395 pyrI; aspartate carbamoyltransferase, regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit
D VFMJ11_2633 probable amidohydrolase / K01465 URA4; dihydroorotase [EC:3.5.2.3]
D VFMJ11_A0452 pyrC; dihydroorotase, homodimeric type K01465 URA4; dihydroorotase [EC:3.5.2.3]
D VFMJ11_1363 pyrD; dihydroorotate oxidase K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D VFMJ11_0110 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D VFMJ11_1882 pyrF; orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D VFMJ11_2094 pyrH; UMP kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D VFMJ11_0639 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D VFMJ11_2183 MazG protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D VFMJ11_0366 maf_1; septum formation protein Maf K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D VFMJ11_A0180 conserved hypothetical protein K07043 upp; UTP pyrophosphatase [EC:3.6.1.-]
D VFMJ11_2182 pyrG; CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D VFMJ11_1887 cmk; cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D VFMJ11_1879 udk; uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48]
D VFMJ11_A0435 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D VFMJ11_0814 protein UshA K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D VFMJ11_2176 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D VFMJ11_A0987 acid phosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D VFMJ11_A0330 HAD superfamily (subfamily IA) hydrolase K08723 yjjG; pyrimidine 5'-nucleotidase [EC:3.1.3.-]
D VFMJ11_1615 udp; uridine phosphorylase K00757 udp; uridine phosphorylase [EC:2.4.2.3]
D VFMJ11_A0567 protein Mmc1_2532 K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2]
D VFMJ11_2062 upp; uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D VFMJ11_0306 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D VFMJ11_1604 2',3'-cyclic-nucleotide 2'-phosphodiesterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D VFMJ11_0609 lysine decarboxylase family protein K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-]
D VFMJ11_1578 cdd; cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D VFMJ11_0533 cytosine deaminase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21]
D VFMJ11_A0317 nrdD; anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D VFMJ11_1281 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D VFMJ11_1280 ribonucleoside-diphosphate reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D VFMJ11_A1035 RibG K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D VFMJ11_1862 tmk; thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D VFMJ11_0507 deoA; thymidine phosphorylase K00758 deoA; thymidine phosphorylase [EC:2.4.2.4]
D VFMJ11_1709 tdk; thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21]
D VFMJ11_0459 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:vfm00250]
D VFMJ11_A0319 aromatic-amino-acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D VFMJ11_2199 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D VFMJ11_1642 aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
D VFMJ11_1764 ansA; L-asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D VFMJ11_1621 L-asparaginase 2 K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D VFMJ11_0842 asnB; asparagine synthase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D VFMJ11_1798 aminotransferase, class I and II K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D VFMJ11_0330 serine--pyruvate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D VFMJ11_0941 ald; alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D VFMJ11_2474 aspA; aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1]
D VFMJ11_2416 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D VFMJ11_2415 argH; argininosuccinate lyase K14681 argHA; argininosuccinate lyase / amino-acid N-acetyltransferase [EC:4.3.2.1 2.3.1.1]
D VFMJ11_2431 purA_2; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D VFMJ11_1135 purA_1; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D VFMJ11_1914 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D VFMJ11_0396 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D VFMJ11_0395 pyrI; aspartate carbamoyltransferase, regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit
D VFMJ11_1137 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D VFMJ11_2230 ferredoxin-dependent glutamate synthase 1 K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D VFMJ11_2231 glutamate synthase, small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D VFMJ11_1362 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D VFMJ11_A0958 bifunctional protein PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D VFMJ11_0096 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D VFMJ11_0473 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D VFMJ11_0472 carA; carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D VFMJ11_0423 thermolabile glutaminase (Glutaminase A) K01425 glsA; glutaminase [EC:3.5.1.2]
D VFMJ11_2493 glmS; glutamine-fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D VFMJ11_1816 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:vfm00260]
D VFMJ11_0540 Aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D VFMJ11_0329 asparate kinase, monofunctional class K00928 lysC; aspartate kinase [EC:2.7.2.4]
D VFMJ11_A1236 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D VFMJ11_2224 bifunctional aspartokinase/homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D VFMJ11_2378 bifunctional aspartokinase/homoserine dehydrogenase II (akii-hdii) K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D VFMJ11_1824 asd_2; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D VFMJ11_1765 asd_1; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D VFMJ11_2223 thrB; homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D VFMJ11_2222 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D VFMJ11_1561 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D VFMJ11_A0544 Low specificity L-threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48]
D VFMJ11_0715 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D VFMJ11_0330 serine--pyruvate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D VFMJ11_2265 glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D VFMJ11_0193 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D VFMJ11_2211 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D VFMJ11_0937 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D VFMJ11_0511 phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D VFMJ11_A0461 kbl; 2-amino-3-ketobutyrate coenzyme A ligase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D VFMJ11_A0460 tdh; L-threonine 3-dehydrogenase K00060 tdh; threonine 3-dehydrogenase [EC:1.1.1.103]
D VFMJ11_A0790 gcvP; glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D VFMJ11_A0787 gcvT; glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D VFMJ11_2413 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D VFMJ11_2292 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D VFMJ11_A0789 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D VFMJ11_2547 CDP-diacylglycerol--serine O-phosphatidyltransferase K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D VFMJ11_1252 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D VFMJ11_A1088 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D VFMJ11_2695 ilvA; threonine ammonia-lyase, biosynthetic K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D VFMJ11_0754 alr_1; alanine racemase K25317 alr; amino-acid racemase [EC:5.1.1.10]
D VFMJ11_1110 trpA; tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D VFMJ11_1111 trpB; tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D VFMJ11_A1234 ectB; diaminobutyrate--2-oxoglutarate aminotransferase K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76]
D VFMJ11_A1233 ectA; L-2,4-diaminobutyric acid acetyltransferase K06718 ectA; L-2,4-diaminobutyric acid acetyltransferase [EC:2.3.1.178]
D VFMJ11_A1235 ectC; ectoine synthase K06720 ectC; L-ectoine synthase [EC:4.2.1.108]
C 00270 Cysteine and methionine metabolism [PATH:vfm00270]
D VFMJ11_2468 serine acetyltransferase 4 K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D VFMJ11_0182 serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D VFMJ11_2028 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D VFMJ11_1682 cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D VFMJ11_1264 metC; cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D VFMJ11_1332 putative aminotransferase B K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D VFMJ11_1845 protein MalY K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D VFMJ11_0328 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D VFMJ11_1849 metE; 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D VFMJ11_0439 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D VFMJ11_B0152 spermine/spermidine synthase family protein K00797 speE; spermidine synthase [EC:2.5.1.16]
D VFMJ11_1119 autoinducer synthase K13062 ainS; acyl homoserine lactone synthase [EC:2.3.1.184]
D VFMJ11_A1042 autoinducer synthesis protein LuxI K22954 luxI; acyl homoserine lactone synthase [EC:2.3.1.184]
D VFMJ11_1779 MTA/SAH nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D VFMJ11_2236 mtnN; MTA/SAH nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D VFMJ11_0577 conserved hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D VFMJ11_1236 5-methylthioadenosine/S-adenosylhomocysteine deaminase K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28]
D VFMJ11_1343 5-methylthioadenosine/S-adenosylhomocysteine deaminase 1 (MTA/SAH deaminase 1) K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28]
D VFMJ11_1581 aspartate aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D VFMJ11_1356 GAF domain protein K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14]
D VFMJ11_0557 luxS; S-ribosylhomocysteinase LuxS K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D VFMJ11_1178 putative D-cysteine desulfhydrase family protein K01505 E3.5.99.7; 1-aminocyclopropane-1-carboxylate deaminase [EC:3.5.99.7]
D VFMJ11_0540 Aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D VFMJ11_0329 asparate kinase, monofunctional class K00928 lysC; aspartate kinase [EC:2.7.2.4]
D VFMJ11_A1236 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D VFMJ11_2224 bifunctional aspartokinase/homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D VFMJ11_2378 bifunctional aspartokinase/homoserine dehydrogenase II (akii-hdii) K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D VFMJ11_1824 asd_2; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D VFMJ11_1765 asd_1; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D VFMJ11_2169 metA; homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D VFMJ11_2379 metB; O-succinylhomoserine (thiol)-lyase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D VFMJ11_2693 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D VFMJ11_0555 gshA_1; glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D VFMJ11_1027 gshA_2; glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D VFMJ11_0435 gshB; glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D VFMJ11_1030 glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D VFMJ11_A0319 aromatic-amino-acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D VFMJ11_1469 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D VFMJ11_A0124 thiosulfate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D VFMJ11_0754 alr_1; alanine racemase K25317 alr; amino-acid racemase [EC:5.1.1.10]
D VFMJ11_0264 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D VFMJ11_1252 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D VFMJ11_A1088 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D VFMJ11_2211 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D VFMJ11_0937 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:vfm00280]
D VFMJ11_2693 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D VFMJ11_2413 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D VFMJ11_2292 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D VFMJ11_0024 fadB; fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D VFMJ11_1943 fadJ; fatty oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D VFMJ11_1944 fadI; acetyl-CoA C-acyltransferase FadI K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D VFMJ11_0023 fadA; acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D VFMJ11_A0207 dehydrogenase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:vfm00290]
D VFMJ11_2695 ilvA; threonine ammonia-lyase, biosynthetic K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D VFMJ11_0281 leuC; 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D VFMJ11_0280 leuD; 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D VFMJ11_0282 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D VFMJ11_2375 ilvB_1; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D VFMJ11_2691 ilvB_2; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D VFMJ11_2374 ilvN; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D VFMJ11_2692 acetolactate synthase small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D VFMJ11_2657 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D VFMJ11_2694 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D VFMJ11_A0041 dehydratase family protein K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D VFMJ11_2693 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D VFMJ11_0014 valine--pyruvate aminotransferase K00835 avtA; valine--pyruvate aminotransferase [EC:2.6.1.66]
D VFMJ11_1798 aminotransferase, class I and II K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D VFMJ11_0283 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:vfm00300]
D VFMJ11_0540 Aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D VFMJ11_0329 asparate kinase, monofunctional class K00928 lysC; aspartate kinase [EC:2.7.2.4]
D VFMJ11_A1236 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D VFMJ11_2224 bifunctional aspartokinase/homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D VFMJ11_2378 bifunctional aspartokinase/homoserine dehydrogenase II (akii-hdii) K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D VFMJ11_1824 asd_2; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D VFMJ11_1765 asd_1; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D VFMJ11_2052 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D VFMJ11_0470 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D VFMJ11_0590 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D VFMJ11_2396 acetylornithine/succinyldiaminopimelate aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D VFMJ11_2048 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D VFMJ11_2608 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D VFMJ11_2609 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D VFMJ11_A0984 transcriptional regulatory protein K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-]
D VFMJ11_2318 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D VFMJ11_2317 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:vfm00310]
D VFMJ11_0862 sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D VFMJ11_2413 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D VFMJ11_2292 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D VFMJ11_0024 fadB; fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D VFMJ11_1943 fadJ; fatty oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D VFMJ11_0754 alr_1; alanine racemase K25317 alr; amino-acid racemase [EC:5.1.1.10]
D VFMJ11_2162 lysine decarboxylase, constitutive K01582 E4.1.1.18; lysine decarboxylase [EC:4.1.1.18]
D VFMJ11_1619 FAD linked oxidase, C-domain protein K26063 ydiJ; (R)-2-hydroxyglutarate dehydrogenase [EC:1.1.-.-]
C 00220 Arginine biosynthesis [PATH:vfm00220]
D VFMJ11_0397 argF; ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D VFMJ11_2416 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D VFMJ11_2415 argH; argininosuccinate lyase K14681 argHA; argininosuccinate lyase / amino-acid N-acetyltransferase [EC:4.3.2.1 2.3.1.1]
D VFMJ11_0691 ureC; urease, alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D VFMJ11_0692 ureB; urease, beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5]
D VFMJ11_0693 ureA; urease, gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5]
D VFMJ11_0398 arcA; arginine deiminase K01478 arcA; arginine deiminase [EC:3.5.3.6]
D VFMJ11_0423 thermolabile glutaminase (Glutaminase A) K01425 glsA; glutaminase [EC:3.5.1.2]
D VFMJ11_0096 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D VFMJ11_1362 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D VFMJ11_A1243 carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
D VFMJ11_A0319 aromatic-amino-acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D VFMJ11_1798 aminotransferase, class I and II K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D VFMJ11_0599 argA; amino-acid N-acetyltransferase K14682 argAB; amino-acid N-acetyltransferase [EC:2.3.1.1]
D VFMJ11_2417 argB; acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D VFMJ11_2418 argC; N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D VFMJ11_2396 acetylornithine/succinyldiaminopimelate aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D VFMJ11_2419 argE; acetylornithine deacetylase (ArgE) K01438 argE; acetylornithine deacetylase [EC:3.5.1.16]
C 00330 Arginine and proline metabolism [PATH:vfm00330]
D VFMJ11_0533 cytosine deaminase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21]
D VFMJ11_A0971 speA; arginine decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19]
D VFMJ11_A0970 speB; agmatinase K01480 speB; agmatinase [EC:3.5.3.11]
D VFMJ11_A1103 ornithine decarboxylase, inducible K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
D VFMJ11_B0152 spermine/spermidine synthase family protein K00797 speE; spermidine synthase [EC:2.5.1.16]
D VFMJ11_A0424 spermidine N(1)-acetyltransferase K00657 speG; diamine N-acetyltransferase [EC:2.3.1.57]
D VFMJ11_A0700 spermine/spermidine acetyltransferase K00657 speG; diamine N-acetyltransferase [EC:2.3.1.57]
D VFMJ11_1579 amidase, putative K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D VFMJ11_2395 astA; arginine N-succinyltransferase K00673 astA; arginine N-succinyltransferase [EC:2.3.1.109]
D VFMJ11_A0979 astB; succinylarginine dihydrolase K01484 astB; succinylarginine dihydrolase [EC:3.5.3.23]
D VFMJ11_2394 astD; succinylglutamic semialdehyde dehydrogenase K06447 astD; succinylglutamic semialdehyde dehydrogenase [EC:1.2.1.71]
D VFMJ11_1321 succinylglutamate desuccinylase K05526 astE; succinylglutamate desuccinylase [EC:3.5.1.96]
D VFMJ11_0429 proC; pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D VFMJ11_A0958 bifunctional protein PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D VFMJ11_0759 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D VFMJ11_0760 proA; glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D VFMJ11_A0319 aromatic-amino-acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
C 00340 Histidine metabolism [PATH:vfm00340]
D VFMJ11_1095 ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D VFMJ11_1102 histidine biosynthesis bifunctional protein hisIE K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31]
D VFMJ11_1100 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D VFMJ11_1099 hisH; imidazole glycerol phosphate synthase, glutamine amidotransferase subunit K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D VFMJ11_0177 imidazole glycerol phosphate synthase subunit hish 2 K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D VFMJ11_1101 hisF; imidazoleglycerol phosphate synthase, cyclase subunit K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D VFMJ11_0178 putative imidazole glycerol phosphate synthase subunit hisf2 K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D VFMJ11_1098 histidine biosynthesis bifunctional protein HisB K01089 hisB; imidazoleglycerol-phosphate dehydratase / histidinol-phosphatase [EC:4.2.1.19 3.1.3.15]
D VFMJ11_1097 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D VFMJ11_1096 hisD; histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D VFMJ11_0890 phenylalanine and histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3]
D VFMJ11_A0500 hutH; histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3]
D VFMJ11_A0501 hutU; urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49]
D VFMJ11_A0503 hutI; imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7]
D VFMJ11_A0502 hutG; formimidoylglutamase K01479 hutG; formiminoglutamase [EC:3.5.3.8]
C 00350 Tyrosine metabolism [PATH:vfm00350]
D VFMJ11_A0319 aromatic-amino-acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D VFMJ11_1097 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D VFMJ11_1581 aspartate aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D VFMJ11_0663 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D VFMJ11_0659 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D VFMJ11_0957 aldehyde-alcohol dehydrogenase 2 K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D VFMJ11_1266 1,3-propanediol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D VFMJ11_0198 hpcD; 5-carboxymethyl-2-hydroxymuconate delta isomerase K01826 hpaF; 5-carboxymethyl-2-hydroxymuconate isomerase [EC:5.3.3.10]
C 00360 Phenylalanine metabolism [PATH:vfm00360]
D VFMJ11_A0319 aromatic-amino-acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D VFMJ11_1097 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D VFMJ11_1581 aspartate aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D VFMJ11_A0861 acetyltransferase, gnat family K03825 aaaT; L-phenylalanine/L-methionine N-acetyltransferase [EC:2.3.1.53 2.3.1.-]
D VFMJ11_1579 amidase, putative K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D VFMJ11_A0422 NADH oxidase K10797 enr; 2-enoate reductase [EC:1.3.1.31]
C 00380 Tryptophan metabolism [PATH:vfm00380]
D VFMJ11_0862 sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D VFMJ11_2413 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D VFMJ11_2292 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D VFMJ11_0024 fadB; fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D VFMJ11_1943 fadJ; fatty oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D VFMJ11_1579 amidase, putative K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D VFMJ11_2158 catalase K03781 katE; catalase [EC:1.11.1.6]
D VFMJ11_A0023 catalase K03781 katE; catalase [EC:1.11.1.6]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:vfm00400]
D VFMJ11_0565 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D VFMJ11_1324 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D VFMJ11_A0433 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D VFMJ11_2403 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D VFMJ11_2504 aroQ; 3-dehydroquinate dehydratase, type II K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D VFMJ11_2666 aroE; shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D VFMJ11_2404 aroK_1; shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D VFMJ11_1888 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D VFMJ11_1937 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D VFMJ11_1115 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D VFMJ11_1114 anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D VFMJ11_1113 trpD; anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D VFMJ11_1112 tryptophan biosynthesis protein trpCF K13498 trpCF; indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase [EC:4.1.1.48 5.3.1.24]
D VFMJ11_1110 trpA; tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D VFMJ11_1111 trpB; tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D VFMJ11_0566 T-protein K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12]
D VFMJ11_0573 P-protein K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D VFMJ11_1348 cyclohexadienyl dehydratase K01713 pheC; cyclohexadienyl dehydratase [EC:4.2.1.51 4.2.1.91]
D VFMJ11_A0319 aromatic-amino-acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D VFMJ11_1097 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D VFMJ11_1581 aspartate aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:vfm00410]
D VFMJ11_1137 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D VFMJ11_2284 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D VFMJ11_0024 fadB; fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D VFMJ11_1943 fadJ; fatty oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
C 00430 Taurine and hypotaurine metabolism [PATH:vfm00430]
D VFMJ11_1137 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D VFMJ11_A0110 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D VFMJ11_0941 ald; alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D VFMJ11_1362 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2]
D VFMJ11_0874 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D VFMJ11_0875 ackA_1; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D VFMJ11_A0921 ackA_2; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:vfm00450]
D VFMJ11_2379 metB; O-succinylhomoserine (thiol)-lyase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D VFMJ11_1264 metC; cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D VFMJ11_1332 putative aminotransferase B K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D VFMJ11_1845 protein MalY K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D VFMJ11_0328 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D VFMJ11_1849 metE; 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D VFMJ11_0940 trxB; thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D VFMJ11_0308 sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D VFMJ11_0307 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D VFMJ11_2634 conserved hypothetical protein K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D VFMJ11_1881 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:vfm00460]
D VFMJ11_A0110 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D VFMJ11_1764 ansA; L-asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D VFMJ11_1621 L-asparaginase 2 K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D VFMJ11_0715 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:vfm00470]
D VFMJ11_0289 alr_2; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D VFMJ11_A0584 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D VFMJ11_0754 alr_1; alanine racemase K25317 alr; amino-acid racemase [EC:5.1.1.10]
D VFMJ11_0423 thermolabile glutaminase (Glutaminase A) K01425 glsA; glutaminase [EC:3.5.1.2]
D VFMJ11_2557 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D VFMJ11_2315 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D VFMJ11_1642 aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
D VFMJ11_2608 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D VFMJ11_2609 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
C 00480 Glutathione metabolism [PATH:vfm00480]
D VFMJ11_A0110 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D VFMJ11_1457 LamB/YcsF family protein K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9]
D VFMJ11_0555 gshA_1; glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D VFMJ11_1027 gshA_2; glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D VFMJ11_0435 gshB; glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D VFMJ11_1030 glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D VFMJ11_0403 pepA; cytosol aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D VFMJ11_0638 peptidase B K07751 pepB; PepB aminopeptidase [EC:3.4.11.23]
D VFMJ11_1360 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D VFMJ11_0755 aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D VFMJ11_A0948 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D VFMJ11_1465 stringent starvation protein A K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D VFMJ11_2614 gor; glutathione-disulfide reductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7]
D VFMJ11_1902 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D VFMJ11_A0520 gnd; 6-phosphogluconate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D VFMJ11_A0518 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D VFMJ11_2412 hybrid peroxiredoxin hyPrx5 (Thioredoxin reductase) K24136 pgdX; glutathione-dependent peroxiredoxin [EC:1.11.1.27]
D VFMJ11_A1103 ornithine decarboxylase, inducible K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
D VFMJ11_B0152 spermine/spermidine synthase family protein K00797 speE; spermidine synthase [EC:2.5.1.16]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation [PATH:vfm00511]
D VFMJ11_A0385 evolved beta-galactosidase subunit alpha (Lactase) K12111 ebgA; evolved beta-galactosidase subunit alpha [EC:3.2.1.23]
D VFMJ11_A0383 evolved beta-galactosidase beta-subunit K12112 ebgC; evolved beta-galactosidase subunit beta
D VFMJ11_A1128 chitobiase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D VFMJ11_2254 beta-hexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D VFMJ11_A0129 beta-mannosidase K01192 E3.2.1.25; beta-mannosidase [EC:3.2.1.25]
C 00540 Lipopolysaccharide biosynthesis [PATH:vfm00540]
D VFMJ11_2084 lpxA; acyl-(acyl-carrier-protein)-UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D VFMJ11_2308 lpxC; UDP-3-O-(3-hydroxymyristoyl) N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D VFMJ11_2086 lpxD; UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D VFMJ11_1712 lpxH; UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D VFMJ11_2083 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D VFMJ11_A0474 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D VFMJ11_0383 sugar isomerase, KpsF/GutQ family K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D VFMJ11_0808 kdsA; 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D VFMJ11_0382 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D VFMJ11_A0476 kdsB; 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D VFMJ11_0135 3-deoxy-D-manno-octulosonic-acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D VFMJ11_0120 lipid A biosynthesis lauroyl acyltransferase (Heat shockprotein B) K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D VFMJ11_A0774 lipid A biosynthesis lauroyl acyltransferase (Heat shockprotein B) K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D VFMJ11_1931 msbB; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243]
D VFMJ11_A0243 integral membrane protein K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D VFMJ11_0134 3-deoxy-D-manno-octulosonic acid kinase (KDO kinase) K11211 kdkA; 3-deoxy-D-manno-octulosonic acid kinase [EC:2.7.1.166]
D VFMJ11_2066 gmhA; phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D VFMJ11_2345 bifunctional protein HldE K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D VFMJ11_0706 D,D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D VFMJ11_0145 rfaD; ADP-glyceromanno-heptose 6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D VFMJ11_0142 rfaF; lipopolysaccharide heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D VFMJ11_0136 O-antigen polymerase, putative K02847 waaL; O-antigen ligase [EC:2.4.99.26]
C 00542 O-Antigen repeat unit biosynthesis [PATH:vfm00542]
D VFMJ11_0170 wecA; undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:vfm00541]
D VFMJ11_0333 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D VFMJ11_A0390 galE_1; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D VFMJ11_0192 galE_2; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D VFMJ11_0190 udp-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D VFMJ11_0184 UDP-glucuronate 5'-epimerase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D VFMJ11_0158 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D VFMJ11_0157 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D VFMJ11_0160 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D VFMJ11_0159 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D VFMJ11_A0799 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D VFMJ11_1129 phosphoglucomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D VFMJ11_2697 glmU; UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D VFMJ11_0171 pseB; UDP-N-acetylglucosamine 4,6-dehydratase K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-]
D VFMJ11_0174 FlmD K15897 pseG; UDP-2,4-diacetamido-2,4,6-trideoxy-beta-L-altropyranose hydrolase [EC:3.6.1.57]
D VFMJ11_0173 pseF; pseudaminic acid CMP-transferase K15899 pseF; pseudaminic acid cytidylyltransferase [EC:2.7.7.81]
D VFMJ11_0189 UDP-D-quinovosamine 4-dehydrogenase K24300 wbpM; UDP-N-acetylglucosamine 4,6-dehydratase [EC:4.2.1.135]
D VFMJ11_0161 VI polysaccharide biosynthesis protein VipA/tviB K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-]
C 00550 Peptidoglycan biosynthesis [PATH:vfm00550]
D VFMJ11_0391 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D VFMJ11_2545 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D VFMJ11_2312 murC; UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D VFMJ11_2315 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D VFMJ11_2318 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D VFMJ11_A0584 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D VFMJ11_2317 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D VFMJ11_2092 uppS; undecaprenyl pyrophosphate synthetase 1 K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D VFMJ11_2356 uppP; undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D VFMJ11_2316 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D VFMJ11_2313 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D VFMJ11_2410 penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D VFMJ11_2276 mrcB; penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D VFMJ11_0767 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D VFMJ11_2319 peptidoglycan synthetase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D VFMJ11_0764 D-alanyl-D-alanine carboxypeptidase DacC K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D VFMJ11_0474 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
C 00552 Teichoic acid biosynthesis [PATH:vfm00552]
D VFMJ11_2356 uppP; undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D VFMJ11_0170 wecA; undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D VFMJ11_0189 UDP-D-quinovosamine 4-dehydrogenase K24300 wbpM; UDP-N-acetylglucosamine 4,6-dehydratase [EC:4.2.1.135]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:vfm00543]
D VFMJ11_0170 wecA; undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D VFMJ11_A0515 chitin synthase K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-]
D VFMJ11_2468 serine acetyltransferase 4 K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D VFMJ11_0182 serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:vfm00730]
D VFMJ11_0033 thiC; thiamine biosynthesis protein ThiC K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D VFMJ11_A0354 thiD; phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D VFMJ11_0035 adenylyltransferase ThiF K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73]
D VFMJ11_0631 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D VFMJ11_0736 thiI; thiamine biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D VFMJ11_0038 thiH; thiazole biosynthesis protein ThiH K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19]
D VFMJ11_0731 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D VFMJ11_0037 thiG; thiazole biosynthesis protein ThiG K03149 thiG; thiazole synthase [EC:2.8.1.10]
D VFMJ11_A0359 thiM; hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D VFMJ11_0034 thiE_2; thiamine-phosphate pyrophosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D VFMJ11_A0360 thiE_1; thiamine-phosphate pyrophosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D VFMJ11_0725 thiL; thiamine-monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D VFMJ11_2452 rsgA_1; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D VFMJ11_A0031 rsgA_2; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D VFMJ11_0830 adenylate kinase (ATP-AMP transphosphorylase) K00939 adk; adenylate kinase [EC:2.7.4.3]
D VFMJ11_A0358 TENA/THI-4 family protein K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
C 00740 Riboflavin metabolism [PATH:vfm00740]
D VFMJ11_1267 riboflavin biosynthesis protein ribAB K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D VFMJ11_0722 ribBA; bifunctional riboflavin biosynthesis protein RibBA K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D VFMJ11_0720 ribD; riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D VFMJ11_0723 ribH; 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D VFMJ11_1506 ribE_2; riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D VFMJ11_0721 ribE_1; riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D VFMJ11_0465 ribF; riboflavin biosynthesis protein RibF K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D VFMJ11_0060 NAD(P)H-flavin reductase K05368 fre; NAD(P)H-flavin reductase [EC:1.5.1.41]
D VFMJ11_A1087 NADPH-flavin oxidoreductase K19285 nfrA1; FMN reductase (NADPH) [EC:1.5.1.38]
D VFMJ11_A0359 thiM; hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D VFMJ11_2343 adp-ribose pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D VFMJ11_0254 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00750 Vitamin B6 metabolism [PATH:vfm00750]
D VFMJ11_A1255 pdxH; pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
D VFMJ11_2161 pyridoxal kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35]
D VFMJ11_0441 epd; D-erythrose-4-phosphate dehydrogenase K03472 epd; D-erythrose 4-phosphate dehydrogenase [EC:1.2.1.72]
D VFMJ11_1825 erythronate-4-phosphate dehydrogenase K03473 pdxB; erythronate-4-phosphate dehydrogenase [EC:1.1.1.290]
D VFMJ11_0937 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D VFMJ11_0275 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262]
D VFMJ11_2189 pdxJ; pyridoxal phosphate biosynthetic protein PdxJ K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2]
D VFMJ11_2222 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D VFMJ11_1561 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
C 00760 Nicotinate and nicotinamide metabolism [PATH:vfm00760]
D VFMJ11_2199 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D VFMJ11_1004 nadA; quinolinate synthetase complex, A subunit K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D VFMJ11_2297 nadC; nicotinate-nucleotide diphosphorylase (carboxylating) K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D VFMJ11_0509 deoD_1; purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D VFMJ11_A0442 deoD_2; purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D VFMJ11_A1090 deoD_3; purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D VFMJ11_A0435 5'-nucleotidase K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D VFMJ11_0814 protein UshA K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D VFMJ11_2176 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D VFMJ11_A0987 acid phosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D VFMJ11_A0609 nicotinic acid mononucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D VFMJ11_2183 MazG protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D VFMJ11_2521 NADH pyrophosphatase K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]
D VFMJ11_A0612 nadE; NAD+ synthetase K01916 nadE; NAD+ synthase [EC:6.3.1.5]
D VFMJ11_0537 CinA family protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D VFMJ11_1396 NAD-dependent deacetylase K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D VFMJ11_2134 putative inorganic polyphosphate/ATP-NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D VFMJ11_2563 soluble pyridine nucleotide transhydrogenase (STH)(NAD(P)(+) transhydrogenase [B-specific]) K00322 sthA; NAD(P) transhydrogenase [EC:1.6.1.1]
D VFMJ11_A0594 pntA; NAD(P)(+) transhydrogenase (AB-specific), alpha subunit K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D VFMJ11_A0593 NAD(P) transhydrogenase subunit beta K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1]
C 00770 Pantothenate and CoA biosynthesis [PATH:vfm00770]
D VFMJ11_2375 ilvB_1; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D VFMJ11_2691 ilvB_2; acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D VFMJ11_2374 ilvN; acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D VFMJ11_2692 acetolactate synthase small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D VFMJ11_2657 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D VFMJ11_2694 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D VFMJ11_A0041 dehydratase family protein K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D VFMJ11_2283 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D VFMJ11_0738 panE; 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D VFMJ11_2284 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D VFMJ11_2543 coaA; pantothenate kinase K00867 coaA; type I pantothenate kinase [EC:2.7.1.33]
D VFMJ11_0122 coaBC; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D VFMJ11_2183 MazG protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D VFMJ11_0130 coaD; pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D VFMJ11_2302 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D VFMJ11_2188 acpS; holo-(acyl-carrier-protein) synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D VFMJ11_2693 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D VFMJ11_0930 glutamate decarboxylase K24264 panP; aspartate 1-decarboxylase [EC:4.1.1.11]
C 00780 Biotin metabolism [PATH:vfm00780]
D VFMJ11_A0868 bioC; biotin biosynthesis protein BioC K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197]
D VFMJ11_0895 conserved hypothetical protein K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D VFMJ11_1826 3-oxoacyl-(acyl-carrier-protein) synthase 1 K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D VFMJ11_1865 fabF; 3-oxoacyl-(acyl-carrier-protein) synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D VFMJ11_0898 conserved hypothetical protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D VFMJ11_1867 fabG; 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D VFMJ11_0897 3-oxoacyl-(acyl-carrier-protein) reductase, putative K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D VFMJ11_2085 fabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D VFMJ11_0116 bioH; putative pimeloyl-BioC--CoA transferase BioH K02170 bioH; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85]
D VFMJ11_A0869 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D VFMJ11_A0871 bioA; adenosylmethionine-8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D VFMJ11_A0867 bioD; dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D VFMJ11_A0870 bioB; biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6]
D VFMJ11_2544 biotin-(acetyl-CoA-carboxylase) ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:vfm00785]
D VFMJ11_0762 lipB; lipoyltransferase K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D VFMJ11_0761 lipA; lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D VFMJ11_2413 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D VFMJ11_2292 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D VFMJ11_2294 aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D VFMJ11_2293 aceF; dihydrolipoyllysine-residue acetyltransferase E2 component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D VFMJ11_0861 sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D VFMJ11_0862 sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D VFMJ11_A0790 gcvP; glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D VFMJ11_A0787 gcvT; glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D VFMJ11_A0789 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:vfm00790]
D VFMJ11_1717 folE; GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D VFMJ11_1429 NTP pyrophosphohydrolase including oxidative damage repair enzyme K08310 nudB; dihydroneopterin triphosphate diphosphatase [EC:3.6.1.67]
D VFMJ11_2358 folB; dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D VFMJ11_2282 folK_1; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D VFMJ11_2357 folK_2; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D VFMJ11_0480 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D VFMJ11_0272 folA; dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D VFMJ11_1819 bifunctional protein FolC K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D VFMJ11_1267 riboflavin biosynthesis protein ribAB K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D VFMJ11_0722 ribBA; bifunctional riboflavin biosynthesis protein RibBA K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D VFMJ11_2397 para-aminobenzoate synthase glutamine amidotransferase component II (ADC synthase) K01664 pabA; para-aminobenzoate synthetase component II [EC:2.6.1.85]
D VFMJ11_1255 pabB; aminodeoxychorismate synthase, component I K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85]
D VFMJ11_1864 pabC; aminodeoxychorismate lyase K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
D VFMJ11_1240 queD; queuosine biosynthesis protein QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D VFMJ11_A0542 queuosine biosynthesis protein QueE K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D VFMJ11_1683 ExsB protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D VFMJ11_0612 queF; queuine synthase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D VFMJ11_0981 moaA; molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D VFMJ11_0982 moaC; molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D VFMJ11_0984 moaE; molybdopterin converting factor, subunit 2 K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D VFMJ11_A0578 molybdenum cofactor biosynthesis protein K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D VFMJ11_1490 molybdopterin biosynthesis MoeA protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D VFMJ11_1718 molybdopterin biosynthesis protein MoeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D VFMJ11_1489 mobA; molybdopterin-guanine dinucleotide biosynthesis protein A K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77]
C 00670 One carbon pool by folate [PATH:vfm00670]
D VFMJ11_0272 folA; dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D VFMJ11_1925 fhs; formate--tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]
D VFMJ11_1898 bifunctional protein FolD K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D VFMJ11_0715 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D VFMJ11_2064 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D VFMJ11_2512 purH; bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D VFMJ11_2675 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D VFMJ11_A0787 gcvT; glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D VFMJ11_0328 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D VFMJ11_0459 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D VFMJ11_1840 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D VFMJ11_2421 metF; 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D VFMJ11_2209 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:vfm00860]
D VFMJ11_2020 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D VFMJ11_0803 hemA; glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D VFMJ11_2243 hemL; glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D VFMJ11_0052 hemB; delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D VFMJ11_0064 hemC; porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D VFMJ11_0063 hemD; uroporphyrinogen-III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D VFMJ11_2520 hemE; uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D VFMJ11_A0571 coproporphyrinogen III oxidase K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3]
D VFMJ11_0078 hemN; oxygen-independent coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3]
D VFMJ11_0027 protoporphyrinogen oxidase K00230 hemG; menaquinone-dependent protoporphyrinogen oxidase [EC:1.3.5.3]
D VFMJ11_0831 hemH; ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D VFMJ11_0062 uroporphyrin-III C-methyltransferase K02496 hemX; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D VFMJ11_0809 cobA; uroporphyrin-III C-methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D VFMJ11_1625 ferrochelatase K24866 sirC; precorrin-2 dehydrogenase [EC:1.3.1.76]
D VFMJ11_1877 cobO; cob(I)yrinic acid a,c-diamide adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D VFMJ11_A0326 cobQ; cobyric acid synthase CobQ K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10]
D VFMJ11_2237 adenosylcobinamide-phosphate synthase K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10]
D VFMJ11_1308 HutZ protein K07226 hutZ; heme oxygenase (biliverdin-IX-beta and delta-forming) [EC:1.14.99.58]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:vfm00130]
D VFMJ11_2569 putative chorismate--pyruvate lyase K03181 ubiC; chorismate lyase [EC:4.1.3.40]
D VFMJ11_2568 ubiA; 4-hydroxybenzoate polyprenyl transferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D VFMJ11_0058 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98]
D VFMJ11_0254 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D VFMJ11_2205 protein VisC K18800 ubiI; 2-polyprenylphenol 6-hydroxylase [EC:1.14.13.240]
D VFMJ11_1282 ubiG; 3-demethylubiquinone-9 3-O-methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
D VFMJ11_2206 ubiH; 2-polyprenyl-6-methoxyphenol 4-hydroxylase K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
D VFMJ11_0045 ubiquinone/menaquinone biosynthesis methyltransferase UbiE K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D VFMJ11_0779 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase K03184 ubiF; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60]
D VFMJ11_1797 menaquinone-specific isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
D VFMJ11_1796 menD; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9]
D VFMJ11_1795 putative acyl-CoA thioester hydrolase K08680 menH; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [EC:4.2.99.20]
D VFMJ11_1793 menC; o-succinylbenzoic acid synthetase K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113]
D VFMJ11_1792 menE; O-succinylbenzoate-CoA ligase K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26]
D VFMJ11_1794 menB; naphthoate synthase K01661 menB; naphthoate synthase [EC:4.1.3.36]
D VFMJ11_A0762 esterase YdiI K19222 menI; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28]
D VFMJ11_0203 menA; 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:vfm00900]
D VFMJ11_0731 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D VFMJ11_2090 dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D VFMJ11_2179 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D VFMJ11_0801 ispE; 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D VFMJ11_2178 ispF; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D VFMJ11_0643 ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D VFMJ11_0469 ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D VFMJ11_A0972 hydroxymethylglutaryl-coenzyme A reductase K00021 HMGCR; hydroxymethylglutaryl-CoA reductase (NADPH) [EC:1.1.1.34]
D VFMJ11_0254 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D VFMJ11_0393 idi; isopentenyl-diphosphate delta-isomerase K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2]
D VFMJ11_0732 geranyltranstransferase (Farnesyl-diphosphate synthase) K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D VFMJ11_0265 octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D VFMJ11_2092 uppS; undecaprenyl pyrophosphate synthetase 1 K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation [PATH:vfm00907]
D VFMJ11_0024 fadB; fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D VFMJ11_1943 fadJ; fatty oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D VFMJ11_1944 fadI; acetyl-CoA C-acyltransferase FadI K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D VFMJ11_0023 fadA; acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D VFMJ11_0440 tkt_1; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D VFMJ11_A0773 tkt_2; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:vfm00523]
D VFMJ11_0158 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D VFMJ11_0157 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D VFMJ11_0160 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D VFMJ11_0159 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 01054 Nonribosomal peptide structures [PATH:vfm01054]
D VFMJ11_1642 aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
C 01053 Biosynthesis of siderophore group nonribosomal peptides
D VFMJ11_1797 menaquinone-specific isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
C 01055 Biosynthesis of vancomycin group antibiotics
D VFMJ11_0157 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
D VFMJ11_1177 beta-lactamase K17836 penP; beta-lactamase class A [EC:3.5.2.6]
C 00332 Carbapenem biosynthesis [PATH:vfm00332]
D VFMJ11_0759 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D VFMJ11_0760 proA; glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:vfm00261]
D VFMJ11_0308 sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D VFMJ11_0307 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D VFMJ11_0540 Aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D VFMJ11_0329 asparate kinase, monofunctional class K00928 lysC; aspartate kinase [EC:2.7.2.4]
D VFMJ11_A1236 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D VFMJ11_2224 bifunctional aspartokinase/homoserine dehydrogenase I K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D VFMJ11_2378 bifunctional aspartokinase/homoserine dehydrogenase II (akii-hdii) K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D VFMJ11_1824 asd_2; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D VFMJ11_1765 asd_1; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D VFMJ11_2052 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D VFMJ11_0470 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:vfm00521]
D VFMJ11_0854 pgm; phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D VFMJ11_0628 inositol-1-monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D VFMJ11_0158 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D VFMJ11_0157 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D VFMJ11_0160 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D VFMJ11_0159 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
C 00525 Acarbose and validamycin biosynthesis [PATH:vfm00525]
D VFMJ11_0158 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D VFMJ11_0157 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:vfm00401]
D VFMJ11_0566 T-protein K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12]
D VFMJ11_A0319 aromatic-amino-acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D VFMJ11_1097 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D VFMJ11_1581 aspartate aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D VFMJ11_1115 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D VFMJ11_1114 anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D VFMJ11_1868 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D VFMJ11_1867 fabG; 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D VFMJ11_0897 3-oxoacyl-(acyl-carrier-protein) reductase, putative K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D VFMJ11_1866 acpP; acyl carrier protein K02078 acpP; acyl carrier protein
D VFMJ11_0884 acyl carrier protein K02078 acpP; acyl carrier protein
D VFMJ11_0885 acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:vfm00999]
D VFMJ11_0439 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D VFMJ11_2666 aroE; shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
C 00997 Biosynthesis of various other secondary metabolites [PATH:vfm00997]
D VFMJ11_A0200 L-lysine 6-monooxygenase K03897 iucD; lysine N6-hydroxylase [EC:1.14.13.59]
D VFMJ11_A0198 N6-hydroxylysine acetyl transferase K03896 iucB; acetyl CoA:N6-hydroxylysine acetyl transferase [EC:2.3.1.102]
D VFMJ11_A0197 aerobactin siderophore biosynthesis protein IucA K03894 iucA; N2-citryl-N6-acetyl-N6-hydroxylysine synthase [EC:6.3.2.38]
D VFMJ11_A0199 siderophore biosynthesis IucC protein K03895 iucC; aerobactin synthase [EC:6.3.2.39]
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:vfm00362]
D VFMJ11_1944 fadI; acetyl-CoA C-acyltransferase FadI K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D VFMJ11_0023 fadA; acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D VFMJ11_1943 fadJ; fatty oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D VFMJ11_0024 fadB; fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D VFMJ11_0552 oxaloacetate decarboxylase beta chain K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
C 00627 Aminobenzoate degradation [PATH:vfm00627]
D VFMJ11_1579 amidase, putative K01426 E3.5.1.4; amidase [EC:3.5.1.4]
D VFMJ11_1595 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D VFMJ11_0254 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation [PATH:vfm00625]
D VFMJ11_1266 1,3-propanediol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D VFMJ11_0663 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D VFMJ11_0659 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D VFMJ11_0957 aldehyde-alcohol dehydrogenase 2 K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00361 Chlorocyclohexane and chlorobenzene degradation
C 00623 Toluene degradation
C 00622 Xylene degradation
C 00633 Nitrotoluene degradation [PATH:vfm00633]
D VFMJ11_A1170 N-ethylmaleimide reductase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]
D VFMJ11_A0147 N-ethylmaleimide reductase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]
C 00642 Ethylbenzene degradation
D VFMJ11_1944 fadI; acetyl-CoA C-acyltransferase FadI K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D VFMJ11_0023 fadA; acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 00643 Styrene degradation [PATH:vfm00643]
D VFMJ11_1579 amidase, putative K01426 E3.5.1.4; amidase [EC:3.5.1.4]
C 00791 Atrazine degradation
D VFMJ11_0691 ureC; urease, alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D VFMJ11_0692 ureB; urease, beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5]
D VFMJ11_0693 ureA; urease, gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5]
C 00930 Caprolactam degradation [PATH:vfm00930]
D VFMJ11_0024 fadB; fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D VFMJ11_1943 fadJ; fatty oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
C 00626 Naphthalene degradation [PATH:vfm00626]
D VFMJ11_1266 1,3-propanediol dehydrogenase K13954 yiaY; alcohol dehydrogenase [EC:1.1.1.1]
D VFMJ11_0663 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D VFMJ11_0659 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D VFMJ11_0957 aldehyde-alcohol dehydrogenase 2 K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:vfm03020]
D VFMJ11_2530 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D VFMJ11_2529 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D VFMJ11_0250 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D VFMJ11_0103 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:vfm03010]
D VFMJ11_1886 rpsA; ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D VFMJ11_2096 rpsB; ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D VFMJ11_0231 rpsC; ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D VFMJ11_0249 rpsD; ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D VFMJ11_0242 rpsE; ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D VFMJ11_2425 rpsF; ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D VFMJ11_0221 rpsG; ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D VFMJ11_0239 rpsH; ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D VFMJ11_2332 rpsI; ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D VFMJ11_0224 rpsJ; ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D VFMJ11_0248 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D VFMJ11_0220 rpsL; ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D VFMJ11_0247 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D VFMJ11_0238 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D VFMJ11_0490 rpsO; ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D VFMJ11_0561 rpsP; ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D VFMJ11_0234 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D VFMJ11_2423 rpsR; ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D VFMJ11_0229 rpsS; ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D VFMJ11_0463 rpsT; ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D VFMJ11_2361 rpsU; ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D VFMJ11_2533 rplA; ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D VFMJ11_0228 rplB; ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D VFMJ11_0225 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D VFMJ11_0226 rplD; ribosomal protein, L4/L1 family K02926 RP-L4; large subunit ribosomal protein L4
D VFMJ11_0237 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D VFMJ11_0240 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D VFMJ11_2531 rplL; ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D VFMJ11_2422 rplI; ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D VFMJ11_2532 ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D VFMJ11_2534 rplK; ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D VFMJ11_2333 rplM; ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D VFMJ11_0235 rplN; ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D VFMJ11_0244 rplO; ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D VFMJ11_0232 rplP; ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D VFMJ11_0251 rplQ; ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D VFMJ11_0241 rplR; ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D VFMJ11_0564 rplS; ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D VFMJ11_1298 rplT; ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D VFMJ11_0266 rplU; ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D VFMJ11_0230 rplV; ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D VFMJ11_0227 rplW; ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D VFMJ11_0236 rplX; ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D VFMJ11_0900 ribosomal L25p family protein K02897 RP-L25; large subunit ribosomal protein L25
D VFMJ11_0267 rpmA; ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D VFMJ11_0124 rpmB; ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D VFMJ11_0233 rpmC; ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D VFMJ11_0243 rpmD; ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D VFMJ11_2385 rpmE; ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D VFMJ11_1871 rpmF; ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D VFMJ11_0125 rpmG; ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D VFMJ11_0005 rpmH; ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D VFMJ11_1297 rpmI; ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D VFMJ11_0246 rpmJ; ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D VFMJ11_A1267 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D VFMJ11_A1268 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D VFMJ11_2711 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D VFMJ11_2719 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D VFMJ11_A1269 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D VFMJ11_2716 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D VFMJ11_2714 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D VFMJ11_2715 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D VFMJ11_2713 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D VFMJ11_2712 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D VFMJ11_2718 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D VFMJ11_2717 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:vfm00970]
D VFMJ11_2551 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D VFMJ11_0323 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D VFMJ11_2270 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D VFMJ11_2555 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D VFMJ11_2650 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D VFMJ11_1897 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D VFMJ11_0543 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D VFMJ11_0544 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D VFMJ11_0548 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D VFMJ11_0549 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D VFMJ11_0545 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D VFMJ11_0546 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D VFMJ11_0975 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D VFMJ11_0413 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D VFMJ11_0415 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D VFMJ11_0410 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D VFMJ11_A1130 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D VFMJ11_0976 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D VFMJ11_2273 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D VFMJ11_1772 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D VFMJ11_1774 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D VFMJ11_A0311 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D VFMJ11_0580 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D VFMJ11_2268 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D VFMJ11_0325 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D VFMJ11_2233 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D VFMJ11_2548 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D VFMJ11_1666 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D VFMJ11_1669 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D VFMJ11_1744 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D VFMJ11_0780 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D VFMJ11_0793 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D VFMJ11_0788 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D VFMJ11_0791 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D VFMJ11_0795 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D VFMJ11_0784 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D VFMJ11_0321 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D VFMJ11_2235 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D VFMJ11_2553 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D VFMJ11_2663 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D VFMJ11_A0465 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D VFMJ11_2539 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D VFMJ11_A0455 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D VFMJ11_A0839 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D VFMJ11_1665 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D VFMJ11_1741 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D VFMJ11_2448 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D VFMJ11_2446 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D VFMJ11_2442 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D VFMJ11_1739 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D VFMJ11_1743 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D VFMJ11_2450 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D VFMJ11_2444 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D VFMJ11_1668 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D VFMJ11_2647 tRNA-His K14226 tRNA-His; tRNA His
D VFMJ11_2649 tRNA-His K14226 tRNA-His; tRNA His
D VFMJ11_0322 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D VFMJ11_2271 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D VFMJ11_0483 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D VFMJ11_1664 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D VFMJ11_1667 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D VFMJ11_1740 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D VFMJ11_1742 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D VFMJ11_0407 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D VFMJ11_0796 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D VFMJ11_0787 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D VFMJ11_0783 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D VFMJ11_0792 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D VFMJ11_0781 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D VFMJ11_0785 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D VFMJ11_0790 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D VFMJ11_0794 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D VFMJ11_2552 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D VFMJ11_A0466 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D VFMJ11_2662 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D VFMJ11_0782 tRNA-Met K14230 tRNA-Met; tRNA Met
D VFMJ11_0789 tRNA-Met K14230 tRNA-Met; tRNA Met
D VFMJ11_0797 tRNA-Met K14230 tRNA-Met; tRNA Met
D VFMJ11_0786 tRNA-Met K14230 tRNA-Met; tRNA Met
D VFMJ11_2365 tRNA-Met K14230 tRNA-Met; tRNA Met
D VFMJ11_2443 tRNA-Met K14230 tRNA-Met; tRNA Met
D VFMJ11_2445 tRNA-Met K14230 tRNA-Met; tRNA Met
D VFMJ11_2447 tRNA-Met K14230 tRNA-Met; tRNA Met
D VFMJ11_2449 tRNA-Met K14230 tRNA-Met; tRNA Met
D VFMJ11_0484 tRNA-Met K14230 tRNA-Met; tRNA Met
D VFMJ11_0418 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D VFMJ11_2275 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D VFMJ11_0411 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D VFMJ11_0416 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D VFMJ11_0816 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D VFMJ11_2648 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D VFMJ11_2646 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D VFMJ11_0542 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D VFMJ11_0547 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D VFMJ11_1771 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D VFMJ11_A1132 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D VFMJ11_1773 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D VFMJ11_A0312 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D VFMJ11_1777 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D VFMJ11_1776 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D VFMJ11_1022 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D VFMJ11_2538 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D VFMJ11_0412 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D VFMJ11_0417 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D VFMJ11_2274 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D VFMJ11_A1131 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D VFMJ11_2541 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D VFMJ11_0414 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D VFMJ11_2659 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D VFMJ11_0028 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D VFMJ11_A0468 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D VFMJ11_0581 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D VFMJ11_1686 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D VFMJ11_1689 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D VFMJ11_1690 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D VFMJ11_1687 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D VFMJ11_1688 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D VFMJ11_1691 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D VFMJ11_2540 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D VFMJ11_2550 tRNA-Val K14237 tRNA-Val; tRNA Val
D VFMJ11_2661 tRNA-Val K14237 tRNA-Val; tRNA Val
D VFMJ11_A0467 tRNA-Val K14237 tRNA-Val; tRNA Val
D VFMJ11_1329 tRNA-Val K14237 tRNA-Val; tRNA Val
D VFMJ11_1330 tRNA-Val K14237 tRNA-Val; tRNA Val
D VFMJ11_2020 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D VFMJ11_0847 glnS; glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D VFMJ11_0539 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D VFMJ11_0648 conserved hypothetical protein K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D VFMJ11_0990 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D VFMJ11_1239 asnS; asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D VFMJ11_0015 glyQ; glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D VFMJ11_0016 glyS; glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D VFMJ11_1295 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D VFMJ11_0946 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D VFMJ11_2634 conserved hypothetical protein K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D VFMJ11_1710 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D VFMJ11_1881 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D VFMJ11_2675 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D VFMJ11_0401 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D VFMJ11_0772 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D VFMJ11_0466 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D VFMJ11_0452 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D VFMJ11_0877 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D VFMJ11_0701 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D VFMJ11_0644 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D VFMJ11_1318 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D VFMJ11_1319 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D VFMJ11_1854 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D VFMJ11_2398 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:vfm03060]
D VFMJ11_0245 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D VFMJ11_2536 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D VFMJ11_0482 translocase K03075 secG; preprotein translocase subunit SecG
D VFMJ11_0913 secD_1; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D VFMJ11_2101 secD_2; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D VFMJ11_2100 secF_2; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D VFMJ11_0912 secF_1; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D VFMJ11_2102 yajC; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D VFMJ11_0003 inner membrane protein OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase
D VFMJ11_2306 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D VFMJ11_2470 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D VFMJ11_0560 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D VFMJ11_2576 cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor
D VFMJ11_A1239 arsenical pump-driving ATPase K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D VFMJ11_0048 twin arginine-targeting protein translocase TatA K03116 tatA; sec-independent protein translocase protein TatA
D VFMJ11_0049 sec-independent translocase K03117 tatB; sec-independent protein translocase protein TatB
D VFMJ11_0050 tatC; twin arginine-targeting protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC
D VFMJ11_2193 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D VFMJ11_0467 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:vfm04122]
D VFMJ11_0631 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D VFMJ11_1469 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D VFMJ11_A0124 thiosulfate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D VFMJ11_0019 sulfurtransferase TusA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D VFMJ11_0219 dsrH; sulfur relay protein TusB/DsrH K07237 tusB; tRNA 2-thiouridine synthesizing protein B
D VFMJ11_0218 tusC; sulfur relay protein TusC/DsrF K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D VFMJ11_0217 tusD; sulfur relay protein TusD/DsrE K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D VFMJ11_1594 sulfurtransferase TusE (tRNA 2-thiouridine synthesizingprotein E) K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D VFMJ11_1912 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D VFMJ11_0984 moaE; molybdopterin converting factor, subunit 2 K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D VFMJ11_0981 moaA; molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D VFMJ11_0983 moaD; molybdopterin converting factor, subunit 1 K03636 moaD; sulfur-carrier protein
D VFMJ11_1719 moeB; molybdopterin synthase sulfurylase MoeB K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]
D VFMJ11_0982 moaC; molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D VFMJ11_A0578 molybdenum cofactor biosynthesis protein K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D VFMJ11_0736 thiI; thiamine biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D VFMJ11_0036 thiS; thiamine biosynthesis protein ThiS K03154 thiS; sulfur carrier protein
D VFMJ11_0035 adenylyltransferase ThiF K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73]
C 03050 Proteasome
C 03018 RNA degradation [PATH:vfm03018]
D VFMJ11_0455 (Di)nucleoside polyphosphate hydrolase (Ap5Apyrophosphatase) K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D VFMJ11_1875 ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D VFMJ11_0054 ATP-dependent RNA helicase RhlB K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
D VFMJ11_2181 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D VFMJ11_0491 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D VFMJ11_A0411 rhlE; ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D VFMJ11_A0187 putative ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D VFMJ11_1920 putative ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D VFMJ11_1219 putative ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D VFMJ11_1534 putative ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D VFMJ11_2427 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D VFMJ11_A0421 cold-shock deAd box protein a K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D VFMJ11_0068 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D VFMJ11_A1251 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D VFMJ11_0056 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D VFMJ11_2462 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D VFMJ11_2131 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D VFMJ11_0196 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D VFMJ11_2436 protein hfq K03666 hfq; host factor-I protein
D VFMJ11_2281 poly(A) polymerase (PAP) (Plasmid copy number protein) K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:vfm03030]
D VFMJ11_2640 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D VFMJ11_2070 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D VFMJ11_2502 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D VFMJ11_A0387 DNA polymerase III, epsilon chain K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D VFMJ11_A0028 DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D VFMJ11_2081 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D VFMJ11_1811 DNA polymerase III subunit tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D VFMJ11_1861 DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D VFMJ11_0770 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D VFMJ11_0499 DNA polymerase III, psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D VFMJ11_0402 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D VFMJ11_0010 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D VFMJ11_0288 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D VFMJ11_2363 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D VFMJ11_0344 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D VFMJ11_2071 rnhA; ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D VFMJ11_2082 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D VFMJ11_0072 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D VFMJ11_2025 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:vfm03410]
D VFMJ11_0968 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D VFMJ11_2219 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D VFMJ11_0421 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D VFMJ11_0128 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D VFMJ11_A0942 dna-3-methyladenine glycosylase 1 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D VFMJ11_1692 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D VFMJ11_2220 endonuclease 4 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D VFMJ11_0072 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D VFMJ11_0450 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D VFMJ11_2025 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:vfm03420]
D VFMJ11_A0509 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D VFMJ11_0332 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
D VFMJ11_0977 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
D VFMJ11_1746 uvrC; excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C
D VFMJ11_0066 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D VFMJ11_B0141 ATP-dependent DNA helicase Rep K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D VFMJ11_1067 UvrD/REP helicase, putative K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D VFMJ11_0072 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D VFMJ11_2025 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:vfm03430]
D VFMJ11_0536 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D VFMJ11_2438 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D VFMJ11_0454 mutH; DNA mismatch repair endonuclease MutH K03573 mutH; DNA mismatch repair protein MutH
D VFMJ11_0066 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D VFMJ11_B0141 ATP-dependent DNA helicase Rep K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D VFMJ11_1067 UvrD/REP helicase, putative K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D VFMJ11_1575 exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D VFMJ11_0650 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D VFMJ11_0733 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D VFMJ11_0450 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D VFMJ11_0344 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D VFMJ11_2081 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D VFMJ11_0010 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D VFMJ11_1811 DNA polymerase III subunit tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D VFMJ11_0770 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D VFMJ11_1861 DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D VFMJ11_2640 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D VFMJ11_2070 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D VFMJ11_2502 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D VFMJ11_A0387 DNA polymerase III, epsilon chain K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D VFMJ11_A0028 DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D VFMJ11_0402 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D VFMJ11_0499 DNA polymerase III, psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D VFMJ11_2025 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D VFMJ11_2401 retron EC67 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
C 03440 Homologous recombination [PATH:vfm03440]
D VFMJ11_0450 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D VFMJ11_0344 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D VFMJ11_0011 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
D VFMJ11_2190 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D VFMJ11_1809 recR; recombination protein RecR K06187 recR; recombination protein RecR
D VFMJ11_0538 recA; protein RecA K03553 recA; recombination protein RecA
D VFMJ11_0072 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D VFMJ11_0992 ruvA; holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D VFMJ11_0993 ruvB; holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D VFMJ11_0991 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D VFMJ11_2583 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D VFMJ11_0596 recB; exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D VFMJ11_0595 recC; exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D VFMJ11_0597 recD; exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D VFMJ11_2081 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D VFMJ11_0010 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D VFMJ11_1811 DNA polymerase III subunit tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D VFMJ11_0770 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D VFMJ11_1861 DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D VFMJ11_2640 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D VFMJ11_2070 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D VFMJ11_2502 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D VFMJ11_A0387 DNA polymerase III, epsilon chain K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D VFMJ11_A0028 DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D VFMJ11_0402 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D VFMJ11_0499 DNA polymerase III, psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D VFMJ11_2386 primosomal protein N' (ATP-dependent helicase PriA)(Replication factor Y) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D VFMJ11_1090 primosomal replication protein N' K04067 priC; primosomal replication protein N''
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1 [PATH:vfm03250]
D VFMJ11_0741 peptidyl-prolyl cis-trans isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus and Lyssavirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:vfm02010]
D VFMJ11_1486 extracellular tungstate binding protein K05772 tupA; tungstate transport system substrate-binding protein
D VFMJ11_1487 molybdenum transport system permease protein ModB K05773 tupB; tungstate transport system permease protein
D VFMJ11_1488 molybdenum transport ATP-binding protein ModC K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6]
D VFMJ11_A0357 putative thiamine biosynthesis protein K15598 thiY; putative hydroxymethylpyrimidine transport system substrate-binding protein
D VFMJ11_A0356 hydroxymethylpyrimidine transport system permease protein K15599 thiX; putative hydroxymethylpyrimidine transport system permease protein
D VFMJ11_A0355 hydroxymethylpyrimidine transport ATP-binding protein K15600 thiZ; putative hydroxymethylpyrimidine transport system ATP-binding protein
D VFMJ11_A0327 modA; molybdate ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D VFMJ11_A0328 modB; molybdate ABC transporter, permease protein K02018 modB; molybdate transport system permease protein
D VFMJ11_A0329 modC; molybdate ABC transporter, ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D VFMJ11_2259 iron(III) ABC transporter, periplasmic binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D VFMJ11_2258 iron(III)-transport system permease protein K02011 afuB; iron(III) transport system permease protein
D VFMJ11_2257 Fe(3+) ions import ATP-binding protein FbpC 2 K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D VFMJ11_0255 thiB; thiamin/thiamin pyrophosphate ABC transporter, thiamin/thiamin pyrophospate-binding protein K02064 thiB; thiamine transport system substrate-binding protein
D VFMJ11_0256 thiP; thiamine/thiamine pyrophosphate ABC transporter, permease protein K02063 thiP; thiamine transport system permease protein
D VFMJ11_0257 thiQ; thiamine ABC transporter, ATP-binding protein K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]
D VFMJ11_1395 spermidine/putrescine-binding periplasmic protein K11069 potD; spermidine/putrescine transport system substrate-binding protein
D VFMJ11_1394 spermidine/putrescine-binding periplasmic protein K11069 potD; spermidine/putrescine transport system substrate-binding protein
D VFMJ11_1393 spermidine/putrescine ABC transporter membrane component K11070 potC; spermidine/putrescine transport system permease protein
D VFMJ11_1392 spermidine/putrescine transport system permease protein PotB K11071 potB; spermidine/putrescine transport system permease protein
D VFMJ11_1391 spermidine/putrescine import ATP-binding protein PotA K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D VFMJ11_0822 glycine betaine/L-proline-binding protein K02002 proX; glycine betaine/proline transport system substrate-binding protein
D VFMJ11_0823 glycine betaine/L-proline transport system permease protein ProW K02001 proW; glycine betaine/proline transport system permease protein
D VFMJ11_0824 glycine betaine transport ATP-binding protein opuAA K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D VFMJ11_A0926 periplasmic maltose-binding protein K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D VFMJ11_A0925 maltose transport system permease protein MalF K10109 malF; maltose/maltodextrin transport system permease protein
D VFMJ11_A0924 maltose transport system permease protein MalG K10110 malG; maltose/maltodextrin transport system permease protein
D VFMJ11_A0927 lactose transport ATP-binding protein LacK K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D VFMJ11_2149 multiple sugar-binding transport ATP-binding protein MsmK K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D VFMJ11_2146 maltose/maltodextrin-binding protein K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein
D VFMJ11_2147 maltose transport system permease protein MalF K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D VFMJ11_2148 maltose transport system permease protein MalG K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D VFMJ11_0388 toluene tolerance protein TTG2D K07323 mlaC; phospholipid transport system substrate-binding protein
D VFMJ11_0387 toluene tolerance protein TTG2C K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D VFMJ11_0386 toluene tolerance protein Ttg2B, putative K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D VFMJ11_0389 YrbB protein K07122 mlaB; phospholipid transport system transporter-binding protein
D VFMJ11_0385 toluene tolerance protein TTG2A K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D VFMJ11_1543 D-ribose-binding periplasmic protein K10439 rbsB; ribose transport system substrate-binding protein
D VFMJ11_1542 ribose transport system permease protein RbsC K10440 rbsC; ribose transport system permease protein
D VFMJ11_1541 ribose import ATP-binding protein RbsA K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D VFMJ11_1540 high affinity ribose transport protein RbsD K06726 rbsD; D-ribose pyranase [EC:5.4.99.62]
D VFMJ11_2123 phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D VFMJ11_1720 phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D VFMJ11_A0568 phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D VFMJ11_2122 phosphate transport system permease protein PstC K02037 pstC; phosphate transport system permease protein
D VFMJ11_1721 pstC; phosphate ABC transporter, permease protein PstC K02037 pstC; phosphate transport system permease protein
D VFMJ11_2121 phosphate transport system permease protein PstA K02038 pstA; phosphate transport system permease protein
D VFMJ11_1722 pstA; phosphate ABC transporter, permease protein PstA K02038 pstA; phosphate transport system permease protein
D VFMJ11_2120 pstB_2; phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D VFMJ11_1723 pstB_1; phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D VFMJ11_1626 general L-amino acid-binding periplasmic protein AapJ K09969 aapJ; general L-amino acid transport system substrate-binding protein
D VFMJ11_1627 general L-amino acid transport system permease protein AapQ K09970 aapQ; general L-amino acid transport system permease protein
D VFMJ11_1628 general L-amino acid transport system permease protein AapM K09971 aapM; general L-amino acid transport system permease protein
D VFMJ11_1629 general L-amino acid transport ATP-binding protein AapP K09972 aapP; general L-amino acid transport system ATP-binding protein [EC:7.4.2.1]
D VFMJ11_0008 cystine-binding protein K16961 yxeM; putative S-methylcysteine transport system substrate-binding protein
D VFMJ11_0007 cystine transport system permease protein K16962 yxeN; putative S-methylcysteine transport system permease protein
D VFMJ11_0006 L-cystine import ATP-binding protein TcyN K16963 yxeO; putative S-methylcysteine transport system ATP-binding protein
D VFMJ11_1697 lysine-arginine-ornithine-binding periplasmic protein K10022 aotJ; arginine/ornithine transport system substrate-binding protein
D VFMJ11_1695 octopine transport system permease protein OccM K10023 aotM; arginine/ornithine transport system permease protein
D VFMJ11_1696 membrane protein K10024 aotQ; arginine/ornithine transport system permease protein
D VFMJ11_1698 ATP-binding protein K10025 aotP; arginine/ornithine transport system ATP-binding protein [EC:7.4.2.1]
D VFMJ11_0703 D-methionine-binding lipoprotein MetQ K02073 metQ; D-methionine transport system substrate-binding protein
D VFMJ11_0704 D-methionine transport system permease protein MetI K02072 metI; D-methionine transport system permease protein
D VFMJ11_0705 metN; D-methionine ABC transporter, ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein
D VFMJ11_1707 periplasmic oligopeptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D VFMJ11_1706 oligopeptide transport system permease protein OppB K15581 oppB; oligopeptide transport system permease protein
D VFMJ11_1705 oligopeptide transport system permease protein OppC K15582 oppC; oligopeptide transport system permease protein
D VFMJ11_1704 oligopeptide transport ATP-binding protein OppD K15583 oppD; oligopeptide transport system ATP-binding protein
D VFMJ11_1703 oligopeptide transport ATP-binding protein OppF K10823 oppF; oligopeptide transport system ATP-binding protein
D VFMJ11_A0347 peptide transport periplasmic protein SapA K19226 sapA; cationic peptide transport system substrate-binding protein
D VFMJ11_A0346 peptide transport system permease protein SapB K19227 sapB; cationic peptide transport system permease protein
D VFMJ11_A0345 peptide transport system permease protein SapC K19228 sapC; cationic peptide transport system permease protein
D VFMJ11_A0344 peptide transport system ATP-binding protein SapD K19229 sapD; cationic peptide transport system ATP-binding protein
D VFMJ11_A0343 glutathione import ATP-binding protein GsiA K19230 sapF; cationic peptide transport system ATP-binding protein
D VFMJ11_0710 oligopeptide-binding protein OppA K13893 yejA; microcin C transport system substrate-binding protein
D VFMJ11_0708 ABC transporter, permease protein K13894 yejB; microcin C transport system permease protein
D VFMJ11_0709 inner membrane ABC transporter permease protein YejE K13895 yejE; microcin C transport system permease protein
D VFMJ11_A0195 ferrichrome-binding protein K23227 fhuD; ferric hydroxamate transport system substrate-binding protein
D VFMJ11_A0907 ferrichrome-binding protein K23227 fhuD; ferric hydroxamate transport system substrate-binding protein
D VFMJ11_A0196 ferrichrome transport system permease protein FhuB K23228 fhuB; ferric hydroxamate transport system permease protein
D VFMJ11_A0906 ferrichrome transport system permease protein FhuB K23228 fhuB; ferric hydroxamate transport system permease protein
D VFMJ11_A0194 ferrichrome transport ATP-binding protein FhuC K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16]
D VFMJ11_A0908 ferrichrome transport ATP-binding protein FhuC K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16]
D VFMJ11_0868 high-affinity zinc uptake system protein ZnuA K09815 znuA; zinc transport system substrate-binding protein
D VFMJ11_2487 high-affinity zinc uptake system protein ZnuA K09815 znuA; zinc transport system substrate-binding protein
D VFMJ11_0866 high-affinity zinc uptake system membrane protein ZnuB K09816 znuB; zinc transport system permease protein
D VFMJ11_2489 high-affinity zinc uptake system membrane protein ZnuB K09816 znuB; zinc transport system permease protein
D VFMJ11_0867 zinc import ATP-binding protein ZnuC 1 K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D VFMJ11_2488 zinc import ATP-binding protein ZnuC 2 K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D VFMJ11_1660 ABC-type cobalt transport system, permease component K16785 ecfT; energy-coupling factor transport system permease protein
D VFMJ11_A0511 lipoprotein releasing system transmembrane protein LolE K09808 lolC_E; lipoprotein-releasing system permease protein
D VFMJ11_A0513 lolE; lipoprotein releasing system, transmembrane protein LolE K09808 lolC_E; lipoprotein-releasing system permease protein
D VFMJ11_A0512 lolD; lipoprotein releasing system, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D VFMJ11_1954 conserved domain protein K02196 ccmD; heme exporter protein D
D VFMJ11_1955 heme chaperone heme-lyase K02195 ccmC; heme exporter protein C
D VFMJ11_1956 ccmB; heme exporter protein CcmB K02194 ccmB; heme exporter protein B
D VFMJ11_1957 ccmA; heme ABC exporter, ATP-binding protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D VFMJ11_0404 permease YjgP/YjgQ family protein K07091 lptF; lipopolysaccharide export system permease protein
D VFMJ11_0405 permease YjgP/YjgQ family protein K11720 lptG; lipopolysaccharide export system permease protein
D VFMJ11_0379 ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D VFMJ11_2574 cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D VFMJ11_2575 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D VFMJ11_A0473 msbA; lipid A export permease/ATP-binding protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D VFMJ11_1028 ABC transporter, ATP-binding protein K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D VFMJ11_1029 multidrug resistance ABC transporter ATP-binding and permease protein K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D VFMJ11_A0556 ABC-type multidrug efflux pump K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump
D VFMJ11_A1259 type I protein secretion ATP-binding protein K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D VFMJ11_0938 ABC transporter, CydDC-E family, permease/ATP-binding protein CydC K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D VFMJ11_0939 cydD; ABC transporter, CydDC-E family, permease/ATP-binding protein CydD K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
C 02060 Phosphotransferase system (PTS) [PATH:vfm02060]
D VFMJ11_2030 ptsP_2; phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D VFMJ11_2029 phosphocarrier protein HPr (Histidine-containing protein) K02784 ptsH; phosphocarrier protein HPr
D VFMJ11_A0911 pts system glucose-specific eiicba component K20118 ptsG; glucose PTS system EIICBA or EIICB component [EC:2.7.1.199]
D VFMJ11_2031 pts system N-acetylglucosamine-specific eiicba component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D VFMJ11_1859 ptsG; pts system, glucose-specific iibc component K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199]
D VFMJ11_0846 nagE_1; pts system, N-acetylglucosamine-specific iibc component K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D VFMJ11_A0487 nagE_2; pts system, N-acetylglucosamine-specific iibc component K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D VFMJ11_1846 malX; pts system, maltose and glucose-specific iibc component K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]
D VFMJ11_A1083 pts system arbutin-, cellobiose-, and salicin-specific eiibc component K02753 ascF; beta-glucoside (arbutin/salicin/cellobiose) PTS system EIICB component [EC:2.7.1.-]
D VFMJ11_1193 pts system N-acetylmuramic acid-specific eiibc component K11192 murP; N-acetylmuramic acid PTS system EIICB component [EC:2.7.1.192]
D VFMJ11_A0086 mannitol-specific cryptic phosphotransferase enzyme iia component K02798 cmtB; mannitol PTS system EIIA component [EC:2.7.1.197]
D VFMJ11_A0087 pts system mannitol-specific eiicba component K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]
D VFMJ11_0621 lichenan-specific phosphotransferase enzyme iia component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D VFMJ11_0618 BglE K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D VFMJ11_0617 lichenan permease iic component K02761 celB; cellobiose PTS system EIIC component
D VFMJ11_A1119 PTS system, N-acetylgalactosamine-specific IIA component K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-]
D VFMJ11_A1122 N-acetylgalactosamine-specific phosphotransferase enzyme iib component2 K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-]
D VFMJ11_A1121 PTS system, N-acetylgalactosamine-specific IIC component K02746 agaW; N-acetylgalactosamine PTS system EIIC component
D VFMJ11_A1120 PTS system, N-acetylgalactosamine-specific IID component K02747 agaE; N-acetylgalactosamine PTS system EIID component
D VFMJ11_A0157 PTS system, 3-keto-L-gulonate specific IIA component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D VFMJ11_A0155 PTS system, IIB component K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D VFMJ11_A0156 ascorbate-specific PTS system enzyme IIC K03475 ulaA; ascorbate PTS system EIIC component
D VFMJ11_A1060 multiphosphoryl transfer protein K11183 fruB; multiphosphoryl transfer protein [EC:2.7.1.202]
D VFMJ11_A1058 pts system fructose-specific eiibc component K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D VFMJ11_A0801 pts system, fructose specific iibc component K02769 fruAb; fructose PTS system EIIB component [EC:2.7.1.202]
D VFMJ11_A0406 PTS system, fructose-specific IIA component K02768 fruB; fructose PTS system EIIA component [EC:2.7.1.202]
D VFMJ11_A1059 pfkB; 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D VFMJ11_0456 ptsP_1; phosphoenolpyruvate-protein phosphotransferase K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
D VFMJ11_0374 phosphocarrier protein HPr K08485 ptsO; phosphocarrier protein NPr
D VFMJ11_0376 conserved hypothetical protein K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
D VFMJ11_A0800 PTS system, IIA component K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
C 03070 Bacterial secretion system [PATH:vfm03070]
D VFMJ11_2344 TolC protein K12340 tolC; outer membrane protein
D VFMJ11_2597 gspD; general secretion pathway protein D K02453 gspD; general secretion pathway protein D
D VFMJ11_2598 gspC; general secretion pathway protein C K02452 gspC; general secretion pathway protein C
D VFMJ11_2595 gspF; general secretion pathway protein F K02455 gspF; general secretion pathway protein F
D VFMJ11_2594 gspG; general secretion pathway protein G K02456 gspG; general secretion pathway protein G
D VFMJ11_2593 gspH; general secretion pathway protein H K02457 gspH; general secretion pathway protein H
D VFMJ11_2592 gspI; general secretion pathway protein I K02458 gspI; general secretion pathway protein I
D VFMJ11_2591 gspJ; general secretion pathway protein J K02459 gspJ; general secretion pathway protein J
D VFMJ11_2590 gspK; general secretion pathway protein K K02460 gspK; general secretion pathway protein K
D VFMJ11_2589 gspL; general secretion pathway protein L K02461 gspL; general secretion pathway protein L
D VFMJ11_2588 general secretion pathway protein M (Cholera toxin secretion protein epsM) K02462 gspM; general secretion pathway protein M
D VFMJ11_2596 gspE; general secretory pathway protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D VFMJ11_0913 secD_1; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D VFMJ11_2101 secD_2; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D VFMJ11_2100 secF_2; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D VFMJ11_0912 secF_1; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D VFMJ11_2536 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D VFMJ11_0482 translocase K03075 secG; preprotein translocase subunit SecG
D VFMJ11_0245 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D VFMJ11_2102 yajC; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D VFMJ11_0003 inner membrane protein OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase
D VFMJ11_2306 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D VFMJ11_2576 cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor
D VFMJ11_2470 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D VFMJ11_0560 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D VFMJ11_0048 twin arginine-targeting protein translocase TatA K03116 tatA; sec-independent protein translocase protein TatA
D VFMJ11_0049 sec-independent translocase K03117 tatB; sec-independent protein translocase protein TatB
D VFMJ11_0050 tatC; twin arginine-targeting protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC
D VFMJ11_A1069 VgrG protein K11904 vgrG; type VI secretion system secreted protein VgrG
D VFMJ11_1494 Rhs element Vgr family protein K11904 vgrG; type VI secretion system secreted protein VgrG
D VFMJ11_A0830 Rhs element Vgr family protein K11904 vgrG; type VI secretion system secreted protein VgrG
D VFMJ11_1309 VgrG protein K11904 vgrG; type VI secretion system secreted protein VgrG
D VFMJ11_A1070 hemolysin co-regulated protein K11903 hcp; type VI secretion system secreted protein Hcp
D VFMJ11_1495 BfdA K11903 hcp; type VI secretion system secreted protein Hcp
D VFMJ11_A0831 BfdA K11903 hcp; type VI secretion system secreted protein Hcp
D VFMJ11_1078 type VI secretion lipoprotein, family K11906 vasD; type VI secretion system protein VasD
D VFMJ11_A0806 type VI secretion lipoprotein, family K11906 vasD; type VI secretion system protein VasD
D VFMJ11_1075 icmF_1; type VI secretion protein IcmF K11891 impL; type VI secretion system protein ImpL
D VFMJ11_A0817 icmF_2; type VI secretion protein IcmF K11891 impL; type VI secretion system protein ImpL
D VFMJ11_1076 hypothetical membrane associated protein K11892 impK; type VI secretion system protein ImpK
D VFMJ11_A0808 type IV / VI secretion system protein, DotU family K11892 impK; type VI secretion system protein ImpK
D VFMJ11_1082 clpV_1; type VI secretion ATPase, ClpV1 family K11907 vasG; type VI secretion system protein VasG
D VFMJ11_A0832 clpV_2; type VI secretion ATPase, ClpV1 family K11907 vasG; type VI secretion system protein VasG
D VFMJ11_1074 protein phosphatase 2C K11915 stp1; serine/threonine protein phosphatase Stp1 [EC:3.1.3.16]
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:vfm02020]
D VFMJ11_2124 phoR; phosphate regulon sensor kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D VFMJ11_2125 phoB; phosphate regulon transcriptional regulatory protein PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D VFMJ11_2123 phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D VFMJ11_1720 phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D VFMJ11_A0568 phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D VFMJ11_0527 sensor protein PhoQ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D VFMJ11_0526 sensor protein PhoQ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D VFMJ11_0528 transcriptional regulatory protein PhoP K07660 phoP; two-component system, OmpR family, response regulator PhoP
D VFMJ11_0107 transporter, drug/metabolite exporter family K07790 pagO; putative membrane protein PagO
D VFMJ11_0113 osmolarity sensor protein EnvZ K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D VFMJ11_0112 protein PetR K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D VFMJ11_2466 sensor protein CpxA K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D VFMJ11_2465 transcriptional regulatory protein CpxR K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D VFMJ11_2336 protease DegQ K04771 degP; serine protease Do [EC:3.4.21.107]
D VFMJ11_A0212 sensor protein IrlS K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D VFMJ11_A0213 transcriptional activator protein IrlR K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
D VFMJ11_A0493 copper/silver resistance periplasmic protein K07798 cusB; membrane fusion protein, copper/silver efflux system
D VFMJ11_A0494 heavy metal efflux pump, CzcA family K07787 cusA; copper/silver efflux system protein
D VFMJ11_2184 flagellin K02406 fliC; flagellin
D VFMJ11_1993 A-type flagellin K02406 fliC; flagellin
D VFMJ11_1994 A-type flagellin K02406 fliC; flagellin
D VFMJ11_1995 flagellin subunit C K02406 fliC; flagellin
D VFMJ11_1996 flagellin K02406 fliC; flagellin
D VFMJ11_1998 A-type flagellin K02406 fliC; flagellin
D VFMJ11_1966 RNA polymerase sigma factor for flagellar operon (Sigma-F factor)(Sigma-28) K02405 fliA; RNA polymerase sigma factor FliA
D VFMJ11_0734 chemotaxis protein PomA K02556 motA; chemotaxis protein MotA
D VFMJ11_A0220 chemotaxis MotA protein K02556 motA; chemotaxis protein MotA
D VFMJ11_1733 torS; tmao reductase sytem sensor tors K07647 torS; two-component system, OmpR family, sensor histidine kinase TorS [EC:2.7.13.3]
D VFMJ11_1673 TorCAD operon transcriptional regulatory protein TorR K07772 torR; two-component system, OmpR family, torCAD operon response regulator TorR
D VFMJ11_A0335 torC; trimethylamine-N-oxide reductase c-type cytochrome TorC K03532 torC; trimethylamine-N-oxide reductase (cytochrome c), cytochrome c-type subunit TorC
D VFMJ11_A0336 torA; trimethylamine-N-oxide reductase TorA K07811 torA; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D VFMJ11_1674 chaperone protein TorD K03533 torD; TorA specific chaperone
D VFMJ11_2228 aerobic respiration control sensor protein ArcB K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D VFMJ11_2226 aerobic respiration control protein ArcA K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA
D VFMJ11_1919 TctA protein K07793 tctA; putative tricarboxylic transport membrane protein
D VFMJ11_1918 tricarboxylic transport TctB K07794 tctB; putative tricarboxylic transport membrane protein
D VFMJ11_1917 tricarboxylic transport protein TctC K07795 tctC; putative tricarboxylic transport membrane protein
D VFMJ11_0009 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D VFMJ11_1165 C4-dicarboxylate membrane transporter K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D VFMJ11_2170 C4-dicarboxylate membrane transporter K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D VFMJ11_1654 NAD-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D VFMJ11_2042 nitrate/nitrite sensor protein NarQ K07674 narQ; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarQ [EC:2.7.13.3]
D VFMJ11_2043 nitrate/nitrite response regulator protein NarP K07685 narP; two-component system, NarL family, nitrate/nitrite response regulator NarP
D VFMJ11_2456 frdA; fumarate reductase, flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D VFMJ11_2457 fumarate reductase iron-sulfur subunit K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D VFMJ11_2458 fumarate reductase subunit C K00246 frdC; succinate dehydrogenase subunit C
D VFMJ11_2459 fumarate reductase subunit D K00247 frdD; succinate dehydrogenase subunit D
D VFMJ11_A0063 regulatory protein UhpC K07783 uhpC; MFS transporter, OPA family, sugar phosphate sensor protein UhpC
D VFMJ11_A0065 sensor protein UhpB K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D VFMJ11_A0066 transcriptional regulatory protein UhpA K07686 uhpA; two-component system, NarL family, uhpT operon response regulator UhpA
D VFMJ11_A0067 hexose phosphate transport protein K07784 uhpT; MFS transporter, OPA family, hexose phosphate transport protein UhpT
D VFMJ11_2187 signal transduction histidine-protein kinase BarA K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D VFMJ11_1747 response regulator UvrY K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D VFMJ11_0541 csrA; carbon storage regulator K03563 csrA; carbon storage regulator
D VFMJ11_A0963 P pilus assembly protein, chaperone PapD K07346 fimC; fimbrial chaperone protein
D VFMJ11_A0962 P pilus assembly protein, porin PapC K07347 fimD; outer membrane usher protein
D VFMJ11_0512 conserved domain protein K02651 flp; pilus assembly protein Flp/PilA
D VFMJ11_A0252 conserved domain protein K02651 flp; pilus assembly protein Flp/PilA
D VFMJ11_0514 cpaB_1; Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB
D VFMJ11_A0254 cpaB_2; Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB
D VFMJ11_0515 general secretion pathway protein D K02280 cpaC; pilus assembly protein CpaC
D VFMJ11_A0255 general secretion pathway protein D K02280 cpaC; pilus assembly protein CpaC
D VFMJ11_A0257 ATPase involved in chromosome partitioning K02282 cpaE; pilus assembly protein CpaE
D VFMJ11_0517 ATPase involved in chromosome partitioning K02282 cpaE; pilus assembly protein CpaE
D VFMJ11_0518 TadA K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D VFMJ11_A0258 TadA K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D VFMJ11_A0259 Flp pilus assembly protein TadB K12510 tadB; tight adherence protein B
D VFMJ11_0519 Flp pilus assembly protein TadB K12510 tadB; tight adherence protein B
D VFMJ11_A0260 bipartite nuclear localization signal containing protein K12511 tadC; tight adherence protein C
D VFMJ11_0520 bipartite nuclear localization signal containing protein K12511 tadC; tight adherence protein C
D VFMJ11_2098 glnD; protein-P-II uridylyltransferase K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]
D VFMJ11_2077 nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1
D VFMJ11_0094 nitrogen regulation protein NtrB K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D VFMJ11_0093 ntrC; nitrogen regulation protein K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D VFMJ11_0096 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D VFMJ11_0378 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D VFMJ11_2298 fimbrial protein (Pilin) (Strain P1) K02650 pilA; type IV pilus assembly protein PilA
D VFMJ11_2010 cheR; CheR methyltransferase, SAM binding domain K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D VFMJ11_0813 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_1169 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_1450 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_1043 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_1207 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_1596 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_1732 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_1906 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_1916 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_2272 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_2347 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_A0073 toxin corregulated pilus biosynthesis protein I K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_A0131 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_A0363 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_A0205 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_A0206 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_A0428 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_A0497 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_A0498 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_A0765 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_A1192 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_B0155 histidine kinase K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_A0115 aerotaxis receptor K03776 aer; aerotaxis receptor
D VFMJ11_1959 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D VFMJ11_1960 CheW domain protein K03408 cheW; purine-binding chemotaxis protein CheW
D VFMJ11_1963 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D VFMJ11_1127 chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D VFMJ11_1965 chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D VFMJ11_1962 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D VFMJ11_2011 CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D VFMJ11_A0929 chemotaxis protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D VFMJ11_A0785 chemotaxis protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D VFMJ11_0727 autoinducer 2-binding periplasmic protein LuxP K10910 luxP; autoinducer 2-binding periplasmic protein LuxP
D VFMJ11_0728 autoinducer 2 sensor kinase/phosphatase LuxQ K10909 luxQ; two-component system, autoinducer 2 sensor kinase/phosphatase LuxQ [EC:2.7.13.3 3.1.3.-]
D VFMJ11_1118 autoinducer 1 sensor kinase/phosphatase LuxN K15850 luxN; two-component system, autoinducer 1 sensor kinase/phosphatase LuxN [EC:2.7.13.3 3.1.3.-]
D VFMJ11_0979 LuxU K10911 luxU; two-component system, phosphorelay protein LuxU
D VFMJ11_A1147 transcriptional regulator, LuxO family K10912 luxO; two-component system, repressor protein LuxO
D VFMJ11_0978 transcriptional regulatory protein ZraR K10912 luxO; two-component system, repressor protein LuxO
D VFMJ11_2291 LitR, transcriptional regulator K10913 hapR; TetR/AcrR family transcriptional regulator, hemagglutinin/protease regulatory protein
D VFMJ11_A1041 acyl-CoA reductase K03400 luxC; long-chain-fatty-acyl-CoA reductase [EC:1.2.1.50]
D VFMJ11_A1040 acyl transferase K15853 luxD; acyl transferase [EC:2.3.1.-]
D VFMJ11_A1039 alkanal monooxygenase alpha chain (Bacterial luciferasealpha chain) K00494 luxA; alkanal monooxygenase alpha chain [EC:1.14.14.3]
D VFMJ11_A1038 alkanal monooxygenase beta chain (Bacterial luciferasebeta chain) K15854 luxB; alkanal monooxygenase beta chain [EC:1.14.14.3]
D VFMJ11_A1037 long-chain-fatty-acid--luciferin-component ligase (Acyl-protein synthetase) K06046 luxE; long-chain-fatty-acid---luciferin-component ligase [EC:6.2.1.19]
D VFMJ11_A0125 two component system histidine kinase K13040 ttrS; two-component system, LuxR family, sensor histidine kinase TtrS [EC:2.7.13.3]
D VFMJ11_A0126 transcriptional regulatory protein FixJ K13041 ttrR; two-component system, LuxR family, response regulator TtrR
D VFMJ11_1988 FlrA; sigma-54-dependent transcriptional activator K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D VFMJ11_1987 FlrB; two-component sensor kinase K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3]
D VFMJ11_1986 two-component response regulator K10943 flrC; two-component system, response regulator FlrC
D VFMJ11_2392 cyclic nucleotide-binding domain protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D VFMJ11_0423 thermolabile glutaminase (Glutaminase A) K01425 glsA; glutaminase [EC:3.5.1.2]
D VFMJ11_2331 petA; ubiquinol-Cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D VFMJ11_2330 cytochrome B K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D VFMJ11_2329 cytochrome c1 K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D VFMJ11_1377 ccoN; cytochrome c oxidase, Cbb3-type, subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9]
D VFMJ11_1378 ccoO; cytochrome c oxidase, Cbb3-type, subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II
D VFMJ11_1379 ccoQ; cytochrome c oxidase, Cbb3-type, CcoQ subunit K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV
D VFMJ11_1380 ccoP; cytochrome c oxidase, Cbb3-type, subunit III K00406 ccoP; cytochrome c oxidase cbb3-type subunit III
D VFMJ11_0994 cytochrome D ubiquinol oxidase subunit 1 K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D VFMJ11_0995 cydB; cytochrome D ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D VFMJ11_2344 TolC protein K12340 tolC; outer membrane protein
D VFMJ11_0153 putative polysaccharide export protein GfcE K01991 wza; polysaccharide biosynthesis/export protein
D VFMJ11_0155 Low molecular weight protein-tyrosine-phosphatase etp K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]
D VFMJ11_0156 tyrosine-protein kinase wzc K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
D VFMJ11_2013 negative regulator of flagellin synthesis FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis [PATH:vfm04148]
D VFMJ11_A1103 ornithine decarboxylase, inducible K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
D VFMJ11_2331 petA; ubiquinol-Cytochrome c reductase, iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:vfm02024]
D VFMJ11_0557 luxS; S-ribosylhomocysteinase LuxS K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D VFMJ11_0727 autoinducer 2-binding periplasmic protein LuxP K10910 luxP; autoinducer 2-binding periplasmic protein LuxP
D VFMJ11_0728 autoinducer 2 sensor kinase/phosphatase LuxQ K10909 luxQ; two-component system, autoinducer 2 sensor kinase/phosphatase LuxQ [EC:2.7.13.3 3.1.3.-]
D VFMJ11_1119 autoinducer synthase K13062 ainS; acyl homoserine lactone synthase [EC:2.3.1.184]
D VFMJ11_1118 autoinducer 1 sensor kinase/phosphatase LuxN K15850 luxN; two-component system, autoinducer 1 sensor kinase/phosphatase LuxN [EC:2.7.13.3 3.1.3.-]
D VFMJ11_0979 LuxU K10911 luxU; two-component system, phosphorelay protein LuxU
D VFMJ11_A1147 transcriptional regulator, LuxO family K10912 luxO; two-component system, repressor protein LuxO
D VFMJ11_0978 transcriptional regulatory protein ZraR K10912 luxO; two-component system, repressor protein LuxO
D VFMJ11_2436 protein hfq K03666 hfq; host factor-I protein
D VFMJ11_2291 LitR, transcriptional regulator K10913 hapR; TetR/AcrR family transcriptional regulator, hemagglutinin/protease regulatory protein
D VFMJ11_A1042 autoinducer synthesis protein LuxI K22954 luxI; acyl homoserine lactone synthase [EC:2.3.1.184]
D VFMJ11_A1043 transcriptional activator protein LuxR K15852 luxR; LuxR family transcriptional regulator, transcriptional activator of the bioluminescence operon
D VFMJ11_A1039 alkanal monooxygenase alpha chain (Bacterial luciferasealpha chain) K00494 luxA; alkanal monooxygenase alpha chain [EC:1.14.14.3]
D VFMJ11_A1038 alkanal monooxygenase beta chain (Bacterial luciferasebeta chain) K15854 luxB; alkanal monooxygenase beta chain [EC:1.14.14.3]
D VFMJ11_A1041 acyl-CoA reductase K03400 luxC; long-chain-fatty-acyl-CoA reductase [EC:1.2.1.50]
D VFMJ11_A1040 acyl transferase K15853 luxD; acyl transferase [EC:2.3.1.-]
D VFMJ11_A1037 long-chain-fatty-acid--luciferin-component ligase (Acyl-protein synthetase) K06046 luxE; long-chain-fatty-acid---luciferin-component ligase [EC:6.2.1.19]
D VFMJ11_A1036 NAD(P)H-flavin reductase K20256 luxG; flavin reductase [EC:1.-.-.-]
D VFMJ11_1115 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D VFMJ11_1114 anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D VFMJ11_0565 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D VFMJ11_1324 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D VFMJ11_A0433 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D VFMJ11_1137 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D VFMJ11_A1197 ABC transporter substrate-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D VFMJ11_A1200 ABC transporter permease protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D VFMJ11_A1199 ABC transporter permease protein K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D VFMJ11_A1201 spermidine/putrescine import ATP-binding protein PotA K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D VFMJ11_1834 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D VFMJ11_2368 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D VFMJ11_2376 putative long-chain-fatty-acid--CoA ligase family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D VFMJ11_0535 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D VFMJ11_2392 cyclic nucleotide-binding domain protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D VFMJ11_0293 zinc uptake regulation protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D VFMJ11_1267 riboflavin biosynthesis protein ribAB K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D VFMJ11_0720 ribD; riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D VFMJ11_1707 periplasmic oligopeptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D VFMJ11_1706 oligopeptide transport system permease protein OppB K15581 oppB; oligopeptide transport system permease protein
D VFMJ11_1705 oligopeptide transport system permease protein OppC K15582 oppC; oligopeptide transport system permease protein
D VFMJ11_1704 oligopeptide transport ATP-binding protein OppD K15583 oppD; oligopeptide transport system ATP-binding protein
D VFMJ11_1703 oligopeptide transport ATP-binding protein OppF K10823 oppF; oligopeptide transport system ATP-binding protein
D VFMJ11_2247 chitooligosaccharide-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D VFMJ11_2644 dipeptide-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D VFMJ11_0700 oligopeptide-binding protein OppA K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D VFMJ11_2248 chitooligosaccharide transport system permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D VFMJ11_2643 dipeptide transport system permease protein DppB K02033 ABC.PE.P; peptide/nickel transport system permease protein
D VFMJ11_0699 oligopeptide transport system permease protein OppB K02033 ABC.PE.P; peptide/nickel transport system permease protein
D VFMJ11_2249 chitooligosaccharide transport system permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D VFMJ11_2642 dipeptide transport system permease protein DppC K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D VFMJ11_0698 oligopeptide transport system permease protein OppC K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D VFMJ11_2250 dipeptide transport ATP-binding protein DppD K02031 ddpD; peptide/nickel transport system ATP-binding protein
D VFMJ11_A0233 oligopeptide transport ATP-binding protein OppD K02031 ddpD; peptide/nickel transport system ATP-binding protein
D VFMJ11_0697 oligopeptide transport ATP-binding protein OppD K02031 ddpD; peptide/nickel transport system ATP-binding protein
D VFMJ11_2645 glutathione import ATP-binding protein GsiA K02031 ddpD; peptide/nickel transport system ATP-binding protein
D VFMJ11_0711 dipeptide transport ATP-binding protein DppD K02031 ddpD; peptide/nickel transport system ATP-binding protein
D VFMJ11_0712 oligopeptide transport ATP-binding protein AppF K02032 ddpF; peptide/nickel transport system ATP-binding protein
D VFMJ11_0695 NikE K02032 ddpF; peptide/nickel transport system ATP-binding protein
D VFMJ11_2251 oligopeptide transport ATP-binding protein AppF K02032 ddpF; peptide/nickel transport system ATP-binding protein
D VFMJ11_A0232 glutathione import ATP-binding protein GsiA K02032 ddpF; peptide/nickel transport system ATP-binding protein
D VFMJ11_0003 inner membrane protein OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase
D VFMJ11_2536 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D VFMJ11_0482 translocase K03075 secG; preprotein translocase subunit SecG
D VFMJ11_0245 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D VFMJ11_2102 yajC; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D VFMJ11_2306 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D VFMJ11_2576 cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor
D VFMJ11_2470 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D VFMJ11_0560 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:vfm02030]
D VFMJ11_0813 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_1169 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_1450 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_1043 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_1207 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_1596 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_1732 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_1906 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_1916 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_2272 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_2347 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_A0073 toxin corregulated pilus biosynthesis protein I K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_A0131 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_A0363 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_A0205 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_A0206 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_A0428 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_A0497 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_A0498 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_A0765 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_A1192 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_B0155 histidine kinase K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_A0115 aerotaxis receptor K03776 aer; aerotaxis receptor
D VFMJ11_A0926 periplasmic maltose-binding protein K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D VFMJ11_1543 D-ribose-binding periplasmic protein K10439 rbsB; ribose transport system substrate-binding protein
D VFMJ11_1963 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D VFMJ11_1959 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D VFMJ11_1960 CheW domain protein K03408 cheW; purine-binding chemotaxis protein CheW
D VFMJ11_1127 chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D VFMJ11_1965 chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D VFMJ11_1964 chemotaxis protein CheZ K03414 cheZ; chemotaxis protein CheZ
D VFMJ11_0292 chemotaxis protein CheX K03409 cheX; chemotaxis protein CheX
D VFMJ11_1962 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D VFMJ11_2011 CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D VFMJ11_A0929 chemotaxis protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D VFMJ11_A0785 chemotaxis protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D VFMJ11_2010 cheR; CheR methyltransferase, SAM binding domain K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D VFMJ11_1983 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D VFMJ11_A0219 conserved hypothetical protein K02410 fliG; flagellar motor switch protein FliG
D VFMJ11_1977 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D VFMJ11_1976 flagellar motor switch phosphatase FliY K02417 fliN; flagellar motor switch protein FliN
D VFMJ11_0734 chemotaxis protein PomA K02556 motA; chemotaxis protein MotA
D VFMJ11_A0220 chemotaxis MotA protein K02556 motA; chemotaxis protein MotA
D VFMJ11_0735 flagellar motor protein K02557 motB; chemotaxis protein MotB
D VFMJ11_A0221 chemotaxis MotB protein K02557 motB; chemotaxis protein MotB
C 02040 Flagellar assembly [PATH:vfm02040]
D VFMJ11_1985 fliE; flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D VFMJ11_1984 fliF; flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D VFMJ11_1983 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D VFMJ11_A0219 conserved hypothetical protein K02410 fliG; flagellar motor switch protein FliG
D VFMJ11_1982 flagellar assembly protein K02411 fliH; flagellar assembly protein FliH
D VFMJ11_1981 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D VFMJ11_1980 fliJ; flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ
D VFMJ11_1979 flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK
D VFMJ11_1978 fliL_1; flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL
D VFMJ11_2570 fliL_2; flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL
D VFMJ11_1977 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D VFMJ11_1976 flagellar motor switch phosphatase FliY K02417 fliN; flagellar motor switch protein FliN
D VFMJ11_1975 flagellar protein FliO K02418 fliO; flagellar protein FliO/FliZ
D VFMJ11_1974 flagellar biosynthesis protein K02419 fliP; flagellar biosynthesis protein FliP
D VFMJ11_1973 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D VFMJ11_1972 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D VFMJ11_1969 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D VFMJ11_1971 flhB; flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D VFMJ11_2012 flagellar basal body P-ring biosynthesis protein K02386 flgA; flagellar basal body P-ring formation protein FlgA
D VFMJ11_2009 flgB; flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D VFMJ11_2008 flgC; flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D VFMJ11_2007 flagellar basal body rod modification protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D VFMJ11_2006 flagellar hook protein K02390 flgE; flagellar hook protein FlgE
D VFMJ11_2005 flgF; flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D VFMJ11_2004 flgG; flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D VFMJ11_2003 flgH; flagellar L-ring protein FlgH K02393 flgH; flagellar L-ring protein FlgH
D VFMJ11_2002 flgI; flagellar P-ring protein FlgI K02394 flgI; flagellar P-ring protein FlgI
D VFMJ11_2001 flgJ; flagellar rod assembly protein/muramidase FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ
D VFMJ11_2000 flgK; flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D VFMJ11_1999 flgL; flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL
D VFMJ11_2016 lipoprotein, putative K24344 flgO; flagellar H-ring protein FlgO
D VFMJ11_2015 conserved hypothetical protein K09860 flgP; outer membrane protein FlgP
D VFMJ11_2017 conserved hypothetical protein K24343 flgT; flagellar H-ring protein FlgT
D VFMJ11_2430 sodium-type polar flagellar protein MotX K21217 motX; sodium-type polar flagellar protein MotX
D VFMJ11_0965 sodium-type flagellar protein MotY K21218 motY; sodium-type flagellar protein MotY
D VFMJ11_2184 flagellin K02406 fliC; flagellin
D VFMJ11_1993 A-type flagellin K02406 fliC; flagellin
D VFMJ11_1994 A-type flagellin K02406 fliC; flagellin
D VFMJ11_1995 flagellin subunit C K02406 fliC; flagellin
D VFMJ11_1996 flagellin K02406 fliC; flagellin
D VFMJ11_1998 A-type flagellin K02406 fliC; flagellin
D VFMJ11_1991 flagellar hook-associated protein K02407 fliD; flagellar hook-associated protein 2
D VFMJ11_1989 fliS; flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS
D VFMJ11_0734 chemotaxis protein PomA K02556 motA; chemotaxis protein MotA
D VFMJ11_A0220 chemotaxis MotA protein K02556 motA; chemotaxis protein MotA
D VFMJ11_0735 flagellar motor protein K02557 motB; chemotaxis protein MotB
D VFMJ11_A0221 chemotaxis MotB protein K02557 motB; chemotaxis protein MotB
D VFMJ11_2013 negative regulator of flagellin synthesis FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
D VFMJ11_2014 FlgN K02399 flgN; flagellar biosynthesis protein FlgN
D VFMJ11_2364 RNA polymerase sigma factor RpoD (Sigma-70) K03086 rpoD; RNA polymerase primary sigma factor
D VFMJ11_1988 FlrA; sigma-54-dependent transcriptional activator K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D VFMJ11_0378 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D VFMJ11_1986 two-component response regulator K10943 flrC; two-component system, response regulator FlrC
D VFMJ11_1966 RNA polymerase sigma factor for flagellar operon (Sigma-F factor)(Sigma-28) K02405 fliA; RNA polymerase sigma factor FliA
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D VFMJ11_2181 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
D VFMJ11_0328 metH; methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
D VFMJ11_A0178 GlcNAc-binding protein A K21712 gbpA; N-acetylglucosamine-binding protein A
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:vfm01501]
D VFMJ11_0475 OmpU, outer membrane protein K08720 ompU; outer membrane protein OmpU
D VFMJ11_0740 AmpG protein K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D VFMJ11_A0540 beta-hexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D VFMJ11_1707 periplasmic oligopeptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D VFMJ11_1706 oligopeptide transport system permease protein OppB K15581 oppB; oligopeptide transport system permease protein
D VFMJ11_1705 oligopeptide transport system permease protein OppC K15582 oppC; oligopeptide transport system permease protein
D VFMJ11_1704 oligopeptide transport ATP-binding protein OppD K15583 oppD; oligopeptide transport system ATP-binding protein
D VFMJ11_1703 oligopeptide transport ATP-binding protein OppF K10823 oppF; oligopeptide transport system ATP-binding protein
D VFMJ11_1177 beta-lactamase K17836 penP; beta-lactamase class A [EC:3.5.2.6]
D VFMJ11_2653 transcriptional regulator, TetR family K18136 acrR; TetR/AcrR family transcriptional regulator, multidrug resistance operon repressor
D VFMJ11_A1247 acriflavine resistance protein E (Protein EnvC) K03585 acrA; membrane fusion protein, multidrug efflux system
D VFMJ11_2654 periplasmic component of efflux system K03585 acrA; membrane fusion protein, multidrug efflux system
D VFMJ11_1685 periplasmic component of efflux system K03585 acrA; membrane fusion protein, multidrug efflux system
D VFMJ11_2655 acriflavin resistance protein K18138 acrB; multidrug efflux pump
D VFMJ11_A1024 OqxB K18138 acrB; multidrug efflux pump
D VFMJ11_A1246 OqxB K18138 acrB; multidrug efflux pump
D VFMJ11_2344 TolC protein K12340 tolC; outer membrane protein
D VFMJ11_2410 penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D VFMJ11_0767 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D VFMJ11_2319 peptidoglycan synthetase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D VFMJ11_1156 beta-lactamase K17837 bla2; metallo-beta-lactamase class B [EC:3.5.2.6]
C 01502 Vancomycin resistance [PATH:vfm01502]
D VFMJ11_A0584 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D VFMJ11_0289 alr_2; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D VFMJ11_2317 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D VFMJ11_2316 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D VFMJ11_2313 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:vfm01503]
D VFMJ11_0527 sensor protein PhoQ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D VFMJ11_0526 sensor protein PhoQ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D VFMJ11_0528 transcriptional regulatory protein PhoP K07660 phoP; two-component system, OmpR family, response regulator PhoP
D VFMJ11_A0243 integral membrane protein K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D VFMJ11_A0347 peptide transport periplasmic protein SapA K19226 sapA; cationic peptide transport system substrate-binding protein
D VFMJ11_A0346 peptide transport system permease protein SapB K19227 sapB; cationic peptide transport system permease protein
D VFMJ11_A0345 peptide transport system permease protein SapC K19228 sapC; cationic peptide transport system permease protein
D VFMJ11_A0344 peptide transport system ATP-binding protein SapD K19229 sapD; cationic peptide transport system ATP-binding protein
D VFMJ11_A0343 glutathione import ATP-binding protein GsiA K19230 sapF; cationic peptide transport system ATP-binding protein
D VFMJ11_2466 sensor protein CpxA K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D VFMJ11_2465 transcriptional regulatory protein CpxR K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D VFMJ11_2439 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D VFMJ11_2336 protease DegQ K04771 degP; serine protease Do [EC:3.4.21.107]
D VFMJ11_0661 thiol:disulfide interchange protein DsbA K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D VFMJ11_2685 thiol:disulfide interchange protein DsbA K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D VFMJ11_0741 peptidyl-prolyl cis-trans isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D VFMJ11_A1247 acriflavine resistance protein E (Protein EnvC) K03585 acrA; membrane fusion protein, multidrug efflux system
D VFMJ11_2654 periplasmic component of efflux system K03585 acrA; membrane fusion protein, multidrug efflux system
D VFMJ11_1685 periplasmic component of efflux system K03585 acrA; membrane fusion protein, multidrug efflux system
D VFMJ11_2655 acriflavin resistance protein K18138 acrB; multidrug efflux pump
D VFMJ11_A1024 OqxB K18138 acrB; multidrug efflux pump
D VFMJ11_A1246 OqxB K18138 acrB; multidrug efflux pump
D VFMJ11_2344 TolC protein K12340 tolC; outer membrane protein
D VFMJ11_2084 lpxA; acyl-(acyl-carrier-protein)-UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:vfm01000]
C 01001 Protein kinases [BR:vfm01001]
D VFMJ11_A1188 RIO1 protein K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D VFMJ11_2622 serine/threonine protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D VFMJ11_1565 protein HipA K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D VFMJ11_2144 HipA domain protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D VFMJ11_0156 tyrosine-protein kinase wzc K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
D VFMJ11_0340 chain length regulator K16554 exoP; polysaccharide biosynthesis transport protein [EC:2.7.10.3]
D VFMJ11_2124 phoR; phosphate regulon sensor kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D VFMJ11_0527 sensor protein PhoQ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D VFMJ11_0526 sensor protein PhoQ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D VFMJ11_0113 osmolarity sensor protein EnvZ K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D VFMJ11_2466 sensor protein CpxA K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D VFMJ11_A0212 sensor protein IrlS K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D VFMJ11_1733 torS; tmao reductase sytem sensor tors K07647 torS; two-component system, OmpR family, sensor histidine kinase TorS [EC:2.7.13.3]
D VFMJ11_2228 aerobic respiration control sensor protein ArcB K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D VFMJ11_2042 nitrate/nitrite sensor protein NarQ K07674 narQ; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarQ [EC:2.7.13.3]
D VFMJ11_A0065 sensor protein UhpB K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D VFMJ11_2187 signal transduction histidine-protein kinase BarA K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D VFMJ11_1924 sensor kinase DpiB (Sensor kinase citA) K02476 K02476; two-component system, CitB family, sensor kinase [EC:2.7.13.3]
D VFMJ11_1229 signal transduction histidine kinase, LytS K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D VFMJ11_0094 nitrogen regulation protein NtrB K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D VFMJ11_1484 C4-dicarboxylate transport sensor protein DctB K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D VFMJ11_1963 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D VFMJ11_0728 autoinducer 2 sensor kinase/phosphatase LuxQ K10909 luxQ; two-component system, autoinducer 2 sensor kinase/phosphatase LuxQ [EC:2.7.13.3 3.1.3.-]
D VFMJ11_1118 autoinducer 1 sensor kinase/phosphatase LuxN K15850 luxN; two-component system, autoinducer 1 sensor kinase/phosphatase LuxN [EC:2.7.13.3 3.1.3.-]
D VFMJ11_A0125 two component system histidine kinase K13040 ttrS; two-component system, LuxR family, sensor histidine kinase TtrS [EC:2.7.13.3]
D VFMJ11_1987 FlrB; two-component sensor kinase K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3]
D VFMJ11_2246 two-component sensor histidine kinase K19694 chiS; two-component system, sensor histidine kinase ChiS
C 01009 Protein phosphatases and associated proteins [BR:vfm01009]
D VFMJ11_2462 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D VFMJ11_0829 chaperone protein HtpG (Heat shock protein htpG) (High temperatureprotein G) K04079 HSP90A; molecular chaperone HtpG
D VFMJ11_0511 phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:vfm01002]
D VFMJ11_0467 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
D VFMJ11_2301 bacterial Peptidase A24 N-terminal domain family protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D VFMJ11_0513 conserved hypothetical protein K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D VFMJ11_A0253 conserved hypothetical protein K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D VFMJ11_1451 pcp; pyroglutamyl-peptidase I K01304 pcp; pyroglutamyl-peptidase [EC:3.4.19.3]
D VFMJ11_0652 gmp synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D VFMJ11_1502 NlpC K13695 nlpC; probable lipoprotein NlpC
D VFMJ11_1816 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D VFMJ11_2230 ferredoxin-dependent glutamate synthase 1 K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D VFMJ11_2493 glmS; glutamine-fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D VFMJ11_0842 asnB; asparagine synthase K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D VFMJ11_0737 protein ThiJ K03152 thiJ; protein deglycase [EC:3.5.1.124]
D VFMJ11_A0276 choloylglycine hydrolase K01442 cbh; choloylglycine hydrolase [EC:3.5.1.24]
D VFMJ11_1237 cell wall degradation protein K21470 ycbB; L,D-transpeptidase YcbB
D VFMJ11_A0160 caax amino protease family protein K07052 K07052; CAAX protease family protein
D VFMJ11_1360 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D VFMJ11_2612 oligopeptidase A K01414 prlC; oligopeptidase A [EC:3.4.24.70]
D VFMJ11_1322 oligoendopeptidase F K08602 pepF; oligoendopeptidase F [EC:3.4.24.-]
D VFMJ11_0554 peptidase family M16 K07263 pqqL; zinc protease [EC:3.4.24.-]
D VFMJ11_0029 zinc protease K07263 pqqL; zinc protease [EC:3.4.24.-]
D VFMJ11_0403 pepA; cytosol aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D VFMJ11_0638 peptidase B K07751 pepB; PepB aminopeptidase [EC:3.4.11.23]
D VFMJ11_A1048 carboxypeptidase G2 K01295 cpg; glutamate carboxypeptidase [EC:3.4.17.11]
D VFMJ11_2048 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D VFMJ11_1133 pepT_1; peptidase T K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4]
D VFMJ11_A0286 pepT_2; peptidase T K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4]
D VFMJ11_A0018 conserved hypothetical protein K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4]
D VFMJ11_0755 aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D VFMJ11_A0815 M23 peptidase domain protein K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-]
D VFMJ11_0869 peptidase M23B K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-]
D VFMJ11_2097 map; methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D VFMJ11_0039 Xaa-Pro aminopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D VFMJ11_1555 thermostable carboxypeptidase 1 K01299 E3.4.17.19; carboxypeptidase Taq [EC:3.4.17.19]
D VFMJ11_1602 iadA; beta-aspartyl peptidase K01305 iadA; beta-aspartyl-dipeptidase (metallo-type) [EC:3.4.19.-]
D VFMJ11_0479 ftsH; ATP-dependent metallopeptidase HflB K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D VFMJ11_1232 heat shock protein HtpX K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D VFMJ11_2057 zinc metalloprotease K01423 bepA; beta-barrel assembly-enhancing protease [EC:3.4.-.-]
D VFMJ11_2089 rseP; RIP metalloprotease RseP K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D VFMJ11_2336 protease DegQ K04771 degP; serine protease Do [EC:3.4.21.107]
D VFMJ11_2337 degS; periplasmic serine peptidase DegS K04691 hhoB; serine protease DegS [EC:3.4.21.-]
D VFMJ11_1198 prolyl endopeptidase K01322 PREP; prolyl oligopeptidase [EC:3.4.21.26]
D VFMJ11_A0371 protease II K01354 ptrB; oligopeptidase B [EC:3.4.21.83]
D VFMJ11_0764 D-alanyl-D-alanine carboxypeptidase DacC K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D VFMJ11_0474 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D VFMJ11_0833 clpP; ATP-dependent Clp protease, proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D VFMJ11_0835 lon; ATP-dependent protease La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D VFMJ11_1371 putative protease La family protein K04770 lonH; Lon-like ATP-dependent protease [EC:3.4.21.-]
D VFMJ11_2566 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D VFMJ11_1347 DNA polymerase V subunit K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D VFMJ11_2193 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D VFMJ11_1358 prc; C-processing peptidase K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D VFMJ11_1763 sppA; signal peptide peptidase SppA, 67K type K04773 sppA; protease IV [EC:3.4.21.-]
D VFMJ11_1122 putative protease SohB K04774 sohB; serine protease SohB [EC:3.4.21.-]
D VFMJ11_A1187 peptidase E K05995 pepE; dipeptidase E [EC:3.4.13.21]
D VFMJ11_2571 integral membrane protein K02441 glpG; rhomboid protease GlpG [EC:3.4.21.105]
D VFMJ11_2389 hslV; heat shock protein HslVU, ATP-dependent protease subunit HslV K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D VFMJ11_A0110 ggt; gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D VFMJ11_2127 peptidase U32 K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D VFMJ11_1464 peptidase U32 K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D VFMJ11_0493 collagenase K24845 ubiV; O2-independent ubiquinone biosynthesis protein UbiV
D VFMJ11_0494 STM-proteaseA K24844 ubiU; O2-independent ubiquinone biosynthesis protein UbiU
D VFMJ11_0372 pmbA; PmbA protein K03592 pmbA; PmbA protein
D VFMJ11_0370 tldD; TldD protein K03568 tldD; TldD protein
D VFMJ11_2433 hflC; HflC protein K04087 hflC; modulator of FtsH protease HflC
D VFMJ11_2434 protease activity modulator HflK K04088 hflK; modulator of FtsH protease HflK
C 01003 Glycosyltransferases [BR:vfm01003]
D VFMJ11_A0932 glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21]
D VFMJ11_A1003 celA; cellulose synthase catalytic subunit (UDP-forming) K00694 bcsA; cellulose synthase (UDP-forming) [EC:2.4.1.12]
D VFMJ11_2276 mrcB; penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D VFMJ11_2410 penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D VFMJ11_0170 wecA; undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D VFMJ11_A0515 chitin synthase K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:vfm01005]
D VFMJ11_2084 lpxA; acyl-(acyl-carrier-protein)-UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D VFMJ11_2083 lpxB; lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D VFMJ11_2308 lpxC; UDP-3-O-(3-hydroxymyristoyl) N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D VFMJ11_2086 lpxD; UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D VFMJ11_1712 lpxH; UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D VFMJ11_A0474 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D VFMJ11_0120 lipid A biosynthesis lauroyl acyltransferase (Heat shockprotein B) K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D VFMJ11_A0774 lipid A biosynthesis lauroyl acyltransferase (Heat shockprotein B) K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D VFMJ11_1931 msbB; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243]
D VFMJ11_0135 3-deoxy-D-manno-octulosonic-acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D VFMJ11_A0243 integral membrane protein K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D VFMJ11_0134 3-deoxy-D-manno-octulosonic acid kinase (KDO kinase) K11211 kdkA; 3-deoxy-D-manno-octulosonic acid kinase [EC:2.7.1.166]
D VFMJ11_0808 kdsA; 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D VFMJ11_A0476 kdsB; 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D VFMJ11_0382 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D VFMJ11_0383 sugar isomerase, KpsF/GutQ family K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D VFMJ11_0132 lipopolysaccharide core biosynthesis glycosyltransferase KdtX K12984 waaE; (heptosyl)LPS beta-1,4-glucosyltransferase [EC:2.4.1.-]
D VFMJ11_0142 rfaF; lipopolysaccharide heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D VFMJ11_0136 O-antigen polymerase, putative K02847 waaL; O-antigen ligase [EC:2.4.99.26]
D VFMJ11_0133 ADP-heptose--lipooligosaccharide heptosyltransferase I K12982 opsX; heptosyltransferase I [EC:2.4.-.-]
D VFMJ11_2066 gmhA; phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D VFMJ11_0706 D,D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D VFMJ11_2345 bifunctional protein HldE K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D VFMJ11_0145 rfaD; ADP-glyceromanno-heptose 6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D VFMJ11_0170 wecA; undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D VFMJ11_0188 undecaprenyl-phosphate beta-N-acetyl-D-fucosaminephosphotransferase K13012 wbqP; O-antigen biosynthesis protein WbqP
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:vfm01011]
D VFMJ11_0391 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D VFMJ11_2545 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D VFMJ11_2312 murC; UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D VFMJ11_2315 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D VFMJ11_2318 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D VFMJ11_A0584 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D VFMJ11_0289 alr_2; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D VFMJ11_2557 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D VFMJ11_2316 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D VFMJ11_2313 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D VFMJ11_2356 uppP; undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D VFMJ11_0464 mviN; integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase
D VFMJ11_2410 penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D VFMJ11_2276 mrcB; penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D VFMJ11_0767 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D VFMJ11_2319 peptidoglycan synthetase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D VFMJ11_0764 D-alanyl-D-alanine carboxypeptidase DacC K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D VFMJ11_0474 dacB; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D VFMJ11_1237 cell wall degradation protein K21470 ycbB; L,D-transpeptidase YcbB
D VFMJ11_A0815 M23 peptidase domain protein K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-]
D VFMJ11_0869 peptidase M23B K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-]
D VFMJ11_0570 soluble lytic murein transglycosylase K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D VFMJ11_1405 soluble lytic murein transglycosylase K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D VFMJ11_0601 membrane-bound lytic murein transglycosylase A K08304 mltA; peptidoglycan lytic transglycosylase A [EC:4.2.2.29]
D VFMJ11_1828 membrane-bound lytic murein transglycosylase B K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D VFMJ11_0419 membrane-bound lytic murein transglycosylase C K08306 mltC; peptidoglycan lytic transglycosylase C [EC:4.2.2.29]
D VFMJ11_1449 membrane-bound lytic murein transglycosylase C K08306 mltC; peptidoglycan lytic transglycosylase C [EC:4.2.2.29]
D VFMJ11_2074 membrane-bound lytic murein transglycosylase D K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
D VFMJ11_0667 amino-acid abc transporter binding protein K18691 mltF; peptidoglycan lytic transglycosylase F [EC:4.2.2.29]
D VFMJ11_1863 aminodeoxychorismate lyase K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D VFMJ11_0765 lipoprotein K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D VFMJ11_2439 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D VFMJ11_2296 protein AmpD K03806 ampD; N-acetyl-anhydromuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:vfm01004]
D VFMJ11_1868 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D VFMJ11_1869 3-oxoacyl-(acyl-carrier-protein) synthase 3 protein 1 K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D VFMJ11_0895 conserved hypothetical protein K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D VFMJ11_1826 3-oxoacyl-(acyl-carrier-protein) synthase 1 K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D VFMJ11_1865 fabF; 3-oxoacyl-(acyl-carrier-protein) synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D VFMJ11_0898 conserved hypothetical protein K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D VFMJ11_1867 fabG; 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D VFMJ11_0897 3-oxoacyl-(acyl-carrier-protein) reductase, putative K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D VFMJ11_1370 fabA; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D VFMJ11_2085 fabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D VFMJ11_0926 trans-2-enoyl-CoA reductase K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D VFMJ11_A1165 arylesterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D VFMJ11_1680 tesB; acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
D VFMJ11_1337 acyl-CoA thioester hydrolase YciA K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
D VFMJ11_1107 acyl-CoA thioester hydrolase YciA K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
D VFMJ11_A0308 acyl-CoA desaturase K00507 SCD; stearoyl-CoA desaturase (Delta-9 desaturase) [EC:1.14.19.1]
D VFMJ11_2503 acsA; acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D VFMJ11_1834 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D VFMJ11_2368 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D VFMJ11_2376 putative long-chain-fatty-acid--CoA ligase family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D VFMJ11_0535 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D VFMJ11_2567 glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D VFMJ11_1870 plsX; fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D VFMJ11_2359 conserved hypothetical protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D VFMJ11_0392 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins [BR:vfm01008]
D VFMJ11_1642 aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
C 01006 Prenyltransferases [BR:vfm01006]
D VFMJ11_0732 geranyltranstransferase (Farnesyl-diphosphate synthase) K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D VFMJ11_0265 octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D VFMJ11_2092 uppS; undecaprenyl pyrophosphate synthetase 1 K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D VFMJ11_2437 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D VFMJ11_0203 menA; 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D VFMJ11_2568 ubiA; 4-hydroxybenzoate polyprenyl transferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
C 01007 Amino acid related enzymes [BR:vfm01007]
D VFMJ11_2020 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D VFMJ11_0847 glnS; glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D VFMJ11_2280 glutamyl-tRNA synthetase-related protein K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D VFMJ11_1854 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D VFMJ11_2398 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D VFMJ11_1710 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D VFMJ11_0877 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D VFMJ11_1881 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D VFMJ11_0466 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D VFMJ11_0401 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D VFMJ11_0772 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D VFMJ11_0452 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D VFMJ11_0990 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D VFMJ11_1239 asnS; asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D VFMJ11_0644 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D VFMJ11_0015 glyQ; glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D VFMJ11_0016 glyS; glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D VFMJ11_0946 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D VFMJ11_0701 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D VFMJ11_1295 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D VFMJ11_0539 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D VFMJ11_0648 conserved hypothetical protein K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D VFMJ11_1318 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D VFMJ11_1319 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D VFMJ11_A0319 aromatic-amino-acid aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D VFMJ11_0014 valine--pyruvate aminotransferase K00835 avtA; valine--pyruvate aminotransferase [EC:2.6.1.66]
D VFMJ11_1798 aminotransferase, class I and II K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D VFMJ11_1581 aspartate aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D VFMJ11_1097 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D VFMJ11_A0461 kbl; 2-amino-3-ketobutyrate coenzyme A ligase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D VFMJ11_A0869 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D VFMJ11_1332 putative aminotransferase B K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D VFMJ11_1845 protein MalY K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D VFMJ11_2396 acetylornithine/succinyldiaminopimelate aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D VFMJ11_A1234 ectB; diaminobutyrate--2-oxoglutarate aminotransferase K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76]
D VFMJ11_A0871 bioA; adenosylmethionine-8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D VFMJ11_2243 hemL; glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D VFMJ11_2693 ilvE; branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D VFMJ11_0330 serine--pyruvate aminotransferase K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
D VFMJ11_0937 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:vfm00194]
D VFMJ11_2698 atpC; ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D VFMJ11_2699 atpD; ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D VFMJ11_2700 atpG; ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D VFMJ11_2701 atpA; ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D VFMJ11_2702 atpH; ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D VFMJ11_2703 atpF; ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D VFMJ11_2704 ATP synthase C chain (Lipid-binding protein) K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D VFMJ11_2705 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D VFMJ11_2706 atpI; ATP synthase F0, I subunit K02116 atpI; ATP synthase protein I
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:vfm03000]
D VFMJ11_0870 transcriptional regulator, AraC family K19693 tfoS; AraC family transcriptional regulator, chitin signaling transcriptional activator
D VFMJ11_A0982 transcriptional regulatory protein K13652 K13652; AraC family transcriptional regulator
D VFMJ11_A0910 transcriptional regulator, AraC family K13653 K13653; AraC family transcriptional regulator
D VFMJ11_0605 glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D VFMJ11_A1184 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D VFMJ11_2658 HTH-type transcriptional regulator IlvY K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D VFMJ11_1850 transcriptional activator protein MetR K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D VFMJ11_0461 transcriptional activator protein NhaR (Na+/H+ antiporter regulatory protein) K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D VFMJ11_2411 hydrogen peroxide-inducible genes activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D VFMJ11_2108 hydrogen peroxide-inducible genes activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D VFMJ11_2377 probable HTH-type transcriptional regulator LeuO K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon
D VFMJ11_1815 transcriptional regulator, LysR family K10918 aphB; LysR family transcriptional regulator, transcriptional activator AphB
D VFMJ11_1583 HTH-type transcriptional regulator CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D VFMJ11_1640 transcriptional regulator K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
D VFMJ11_1603 transcriptional regulator K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
D VFMJ11_A1167 transcriptional regulator, LysR family K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
D VFMJ11_A0272 glycerol-3-phosphate regulon repressor K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D VFMJ11_A1125 transcriptional regulator, GlpR family K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor
D VFMJ11_1545 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D VFMJ11_1334 HTH-type transcriptional regulator GalR K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D VFMJ11_A0398 HTH-type transcriptional regulator GalR K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D VFMJ11_2387 transcriptional repressor CytR K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D VFMJ11_A1061 catabolite repressor-activator K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D VFMJ11_1675 HTH-type transcriptional repressor PurR K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
D VFMJ11_A1079 HTH-type transcriptional regulator IdnR K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D VFMJ11_A0386 HTH-type transcriptional regulator EbgR K12113 ebgR; LacI family transcriptional regulator, ebg operon repressor
D VFMJ11_1847 maltose regulon regulatory protein MalI K16136 malI; LacI family transcriptional regulator, maltose regulon regulatory protein
D VFMJ11_A0504 hutC; histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D VFMJ11_1753 fadR; fatty acid metabolism transcriptional regulator FadR K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D VFMJ11_2295 transcriptional regulator of pyruvate dehydrogenase complex K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D VFMJ11_A0034 GntR domain protein K19776 dgoR; GntR family transcriptional regulator, galactonate operon transcriptional repressor
D VFMJ11_2371 transcriptional regulator K15735 csiR; GntR family transcriptional regulator, carbon starvation induced regulator
D VFMJ11_2653 transcriptional regulator, TetR family K18136 acrR; TetR/AcrR family transcriptional regulator, multidrug resistance operon repressor
D VFMJ11_0121 HTH-type protein SlmA K05501 slmA; TetR/AcrR family transcriptional regulator
D VFMJ11_2291 LitR, transcriptional regulator K10913 hapR; TetR/AcrR family transcriptional regulator, hemagglutinin/protease regulatory protein
D VFMJ11_A0112 transcriptional regulator K19736 aefR; TetR/AcrR family transcriptional regulator, regulator of autoinduction and epiphytic fitness
D VFMJ11_A0396 transcriptional regulator, TetR family K19736 aefR; TetR/AcrR family transcriptional regulator, regulator of autoinduction and epiphytic fitness
D VFMJ11_1158 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D VFMJ11_2562 transcriptional repressor of FabB K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
D VFMJ11_0079 transcriptional regulator, AsnC family K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D VFMJ11_0942 leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D VFMJ11_A1225 leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D VFMJ11_1681 glutamate uptake regulatory protein K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
D VFMJ11_A1043 transcriptional activator protein LuxR K15852 luxR; LuxR family transcriptional regulator, transcriptional activator of the bioluminescence operon
D VFMJ11_2526 regulatory protein CsgD K20918 vpsT; LuxR family transcriptional regulator, positive regulator of biofilm formation
D VFMJ11_A0938 HTH-type transcriptional regulator MalT K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
D VFMJ11_A0372 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D VFMJ11_0819 cueR; Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D VFMJ11_2511 zntR; Zn(II)-responsive transcriptional regulator K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA
D VFMJ11_A1171 transcriptional regulator, MerR family K21744 tipA; MerR family transcriptional regulator, thiopeptide resistance regulator
D VFMJ11_0848 ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D VFMJ11_0293 zinc uptake regulation protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D VFMJ11_2392 cyclic nucleotide-binding domain protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D VFMJ11_1385 transcriptional activator protein FnrA K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D VFMJ11_0630 Rrf2 family protein K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D VFMJ11_2428 HTH-type transcriptional regulator NsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D VFMJ11_2482 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D VFMJ11_A0990 transcriptional repressor SmtB K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D VFMJ11_0462 nodulation protein NolR K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator
D VFMJ11_1191 transcriptional regulator, RpiR family protein K15835 murR; RpiR family transcriptional regulator, murPQ operon repressor
D VFMJ11_0929 HTH-type transcriptional regulator HexR K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D VFMJ11_2544 biotin-(acetyl-CoA-carboxylase) ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D VFMJ11_2509 DNA-binding protein fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D VFMJ11_0571 trpR; trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor
D VFMJ11_A0570 oligopeptide-binding protein OppA K11925 sgrR; SgrR family transcriptional regulator
D VFMJ11_1564 HTH-type transcriptional regulator HipB K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D VFMJ11_2145 putative transcriptional regulator, XRE family K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D VFMJ11_1988 FlrA; sigma-54-dependent transcriptional activator K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D VFMJ11_0453 transcriptional regulator K20919 vpsR; sigma-54 dependent transcriptional regulator, positive regulator of biofilm formation
D VFMJ11_1081 transcriptional regulator K11914 sfa2; sigma-54 dependent transcriptional regulator
D VFMJ11_A0833 nitric oxide reductase regulator K11914 sfa2; sigma-54 dependent transcriptional regulator
D VFMJ11_1911 anaerobic nitric oxide reductase transcription regulator NorR K12266 norR; anaerobic nitric oxide reductase transcription regulator
D VFMJ11_A0997 anaerobic nitric oxide reductase transcription regulator NorR K12266 norR; anaerobic nitric oxide reductase transcription regulator
D VFMJ11_2263 carbohydrate diacid regulator K02647 cdaR; carbohydrate diacid regulator
D VFMJ11_1433 virulence gene repressor RsaL K07726 K07726; putative transcriptional regulator
D VFMJ11_1427 transcriptional regulator, XRE family K07726 K07726; putative transcriptional regulator
D VFMJ11_1538 helix-turn-helix domain protein K07726 K07726; putative transcriptional regulator
D VFMJ11_A0080 conserved domain protein K07727 K07727; putative transcriptional regulator
D VFMJ11_2380 met Apo-repressor, MetJ K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
D VFMJ11_A0958 bifunctional protein PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D VFMJ11_0744 BolA protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D VFMJ11_2707 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D VFMJ11_B0011 DNA-binding protein ParB, putative K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D VFMJ11_A1265 DNA-binding protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D VFMJ11_0841 rfaH; transcriptional activator RfaH K05785 rfaH; transcriptional antiterminator RfaH
D VFMJ11_0263 argR; arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D VFMJ11_0844 protein mlc (Making large colonies protein) K02565 nagC; N-acetylglucosamine repressor
D VFMJ11_A0543 protein mlc (Making large colonies protein) K15545 mlc; transcriptional regulator of PTS gene
D VFMJ11_A0358 TENA/THI-4 family protein K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D VFMJ11_A0874 transcriptional regulatory protein TyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D VFMJ11_2165 transcriptional activator CadC K03765 cadC; transcriptional activator of cad operon
D VFMJ11_2053 glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor
D VFMJ11_A0348 pspF; psp operon transcriptional activator K03974 pspF; psp operon transcriptional activator
D VFMJ11_A0351 pspC; phage shock protein C K03973 pspC; phage shock protein C
D VFMJ11_0434 conserved hypothetical protein K07735 algH; putative transcriptional regulator
D VFMJ11_2279 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D VFMJ11_0719 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
C 03021 Transcription machinery [BR:vfm03021]
D VFMJ11_0250 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D VFMJ11_2530 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D VFMJ11_2529 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D VFMJ11_0103 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D VFMJ11_2364 RNA polymerase sigma factor RpoD (Sigma-70) K03086 rpoD; RNA polymerase primary sigma factor
D VFMJ11_A1136 RNA polymerase sigma factor RpoS (Sigma-38) K03087 rpoS; RNA polymerase nonessential primary-like sigma factor
D VFMJ11_2173 rpoS; RNA polymerase sigma factor RpoS K03087 rpoS; RNA polymerase nonessential primary-like sigma factor
D VFMJ11_A0891 RNA polymerase sigma-70 factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D VFMJ11_A0947 sigZ_2; RNA polymerase sigma factor, SigZ family K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D VFMJ11_2198 rpoE; RNA polymerase sigma factor RpoE K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D VFMJ11_1026 sigZ_1; RNA polymerase sigma factor, SigZ family K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D VFMJ11_2573 rpoH; alternative sigma factor RpoH K03089 rpoH; RNA polymerase sigma-32 factor
D VFMJ11_0378 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D VFMJ11_1966 RNA polymerase sigma factor for flagellar operon (Sigma-F factor)(Sigma-28) K02405 fliA; RNA polymerase sigma factor FliA
D VFMJ11_0258 RNA polymerase-associated protein RapA (ATP-dependenthelicase hepA) K03580 hepA; ATP-dependent helicase HepA [EC:5.6.2.-]
D VFMJ11_0486 nusA; transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D VFMJ11_0724 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D VFMJ11_2535 nusG; transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG
D VFMJ11_2328 stringent starvation protein A K03599 sspA; stringent starvation protein A
D VFMJ11_2327 sspB; stringent starvation protein B K03600 sspB; stringent starvation protein B
D VFMJ11_2197 sigma-E factor negative regulatory protein K03597 rseA; sigma-E factor negative regulatory protein RseA
D VFMJ11_2196 periplasmic negative regulator of sigmaE K03598 rseB; sigma-E factor negative regulatory protein RseB
D VFMJ11_2195 positive regulator of sigma E activity K03803 rseC; sigma-E factor negative regulatory protein RseC
D VFMJ11_2279 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D VFMJ11_0476 transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D VFMJ11_0119 greB; transcription elongation factor GreB K04760 greB; transcription elongation factor GreB
D VFMJ11_0056 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:vfm03019]
D VFMJ11_1875 ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D VFMJ11_0367 ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
D VFMJ11_2192 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D VFMJ11_2427 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D VFMJ11_2451 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D VFMJ11_0054 ATP-dependent RNA helicase RhlB K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
D VFMJ11_A0411 rhlE; ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D VFMJ11_A0187 putative ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D VFMJ11_1920 putative ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D VFMJ11_1219 putative ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D VFMJ11_1534 putative ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D VFMJ11_A0421 cold-shock deAd box protein a K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D VFMJ11_0068 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D VFMJ11_A1251 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D VFMJ11_2181 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D VFMJ11_0491 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D VFMJ11_0056 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D VFMJ11_2462 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D VFMJ11_2131 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D VFMJ11_0196 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D VFMJ11_2436 protein hfq K03666 hfq; host factor-I protein
D VFMJ11_2281 poly(A) polymerase (PAP) (Plasmid copy number protein) K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D VFMJ11_0455 (Di)nucleoside polyphosphate hydrolase (Ap5Apyrophosphatase) K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D VFMJ11_0541 csrA; carbon storage regulator K03563 csrA; carbon storage regulator
D VFMJ11_0346 diguanylate cyclase/phosphodiesterase domain 1 K18765 csrD; RNase E specificity factor CsrD
D VFMJ11_2225 regulator of ribonuclease activity A K02553 rraA; regulator of ribonuclease activity A
D VFMJ11_0202 rraA; regulator of ribonuclease activity A K02553 rraA; regulator of ribonuclease activity A
D VFMJ11_0399 hypothetical cytosolic protein K09893 rraB; regulator of ribonuclease activity B
D VFMJ11_0375 hypothetical protein K06958 rapZ; RNase adapter protein RapZ
D VFMJ11_1593 hrpA; ATP-dependent helicase HrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
D VFMJ11_2277 hrpB; ATP-dependent helicase HrpB K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6]
C 03041 Spliceosome
C 03011 Ribosome [BR:vfm03011]
D VFMJ11_1886 rpsA; ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D VFMJ11_2096 rpsB; ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D VFMJ11_0231 rpsC; ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D VFMJ11_0249 rpsD; ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D VFMJ11_0242 rpsE; ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D VFMJ11_2425 rpsF; ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D VFMJ11_0221 rpsG; ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D VFMJ11_0239 rpsH; ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D VFMJ11_2332 rpsI; ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D VFMJ11_0224 rpsJ; ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D VFMJ11_0248 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D VFMJ11_0220 rpsL; ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D VFMJ11_0247 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D VFMJ11_0238 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D VFMJ11_0490 rpsO; ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D VFMJ11_0561 rpsP; ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D VFMJ11_0234 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D VFMJ11_2423 rpsR; ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D VFMJ11_0229 rpsS; ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D VFMJ11_0463 rpsT; ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D VFMJ11_2361 rpsU; ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D VFMJ11_2533 rplA; ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D VFMJ11_0228 rplB; ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D VFMJ11_0225 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D VFMJ11_0226 rplD; ribosomal protein, L4/L1 family K02926 RP-L4; large subunit ribosomal protein L4
D VFMJ11_0237 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D VFMJ11_0240 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D VFMJ11_2422 rplI; ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D VFMJ11_2532 ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D VFMJ11_2534 rplK; ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D VFMJ11_2531 rplL; ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D VFMJ11_2333 rplM; ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D VFMJ11_0235 rplN; ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D VFMJ11_0244 rplO; ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D VFMJ11_0232 rplP; ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D VFMJ11_0251 rplQ; ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D VFMJ11_0241 rplR; ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D VFMJ11_0564 rplS; ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D VFMJ11_1298 rplT; ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D VFMJ11_0266 rplU; ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D VFMJ11_0230 rplV; ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D VFMJ11_0227 rplW; ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D VFMJ11_0236 rplX; ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D VFMJ11_0267 rpmA; ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D VFMJ11_0124 rpmB; ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D VFMJ11_0233 rpmC; ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D VFMJ11_0243 rpmD; ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D VFMJ11_2385 rpmE; ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D VFMJ11_1871 rpmF; ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D VFMJ11_0125 rpmG; ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D VFMJ11_0005 rpmH; ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D VFMJ11_1297 rpmI; ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D VFMJ11_0246 rpmJ; ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D VFMJ11_0900 ribosomal L25p family protein K02897 RP-L25; large subunit ribosomal protein L25
D VFMJ11_A1269 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D VFMJ11_2716 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D VFMJ11_2714 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D VFMJ11_2715 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D VFMJ11_2713 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D VFMJ11_2712 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D VFMJ11_2718 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D VFMJ11_2717 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D VFMJ11_A1267 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D VFMJ11_A1268 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D VFMJ11_2711 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D VFMJ11_2719 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:vfm03009]
D VFMJ11_2192 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D VFMJ11_A1188 RIO1 protein K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D VFMJ11_2451 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D VFMJ11_2191 era; GTP-binding protein Era K03595 era; GTPase
D VFMJ11_0268 cgtA; Obg family GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-]
D VFMJ11_2279 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D VFMJ11_0486 nusA; transcription termination factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D VFMJ11_0724 nusB; transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB
D VFMJ11_2535 nusG; transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG
D VFMJ11_0918 ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D VFMJ11_0274 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D VFMJ11_2676 sun; ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D VFMJ11_2245 ribosomal RNA small subunit methyltransferase C K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D VFMJ11_2577 rsmD; RNA methyltransferase, RsmD family K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D VFMJ11_0436 protein YggJ K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D VFMJ11_1352 ribosomal RNA small subunit methyltransferase F K11392 rsmF; 16S rRNA (cytosine1407-C5)-methyltransferase [EC:2.1.1.178]
D VFMJ11_2709 gidB; 16S rRNA methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D VFMJ11_2321 mraW; S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D VFMJ11_2322 conserved hypothetical protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D VFMJ11_0080 SAM-dependent methyltransferase K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
D VFMJ11_1928 ribosomal RNA large subunit methyltransferase A K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D VFMJ11_2426 RNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D VFMJ11_0478 rrmJ; ribosomal RNA large subunit methyltransferase J K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D VFMJ11_A1248 putative methyltransferase YbiN K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181]
D VFMJ11_0743 putative ribosomal RNA small subunit methyltransferase D K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174]
D VFMJ11_0768 conserved hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D VFMJ11_1104 methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D VFMJ11_1598 methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D VFMJ11_2613 conserved hypothetical protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D VFMJ11_1365 methyltransferase K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D VFMJ11_0607 putative RNA 2'-O-ribose methyltransferase MtfA K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D VFMJ11_0640 radical SAM enzyme, Cfr family K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D VFMJ11_2186 rumA; 23S rRNA (uracil-5-)-methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D VFMJ11_0259 ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D VFMJ11_1103 pseudouridine synthase Rlu family protein K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D VFMJ11_A0534 ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D VFMJ11_A0535 ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D VFMJ11_1120 ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D VFMJ11_1874 ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D VFMJ11_0576 ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D VFMJ11_1903 ribosomal large subunit pseudouridine synthase E K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D VFMJ11_1671 ribosomal large subunit pseudouridine synthase F K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
D VFMJ11_0500 rimI; ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D VFMJ11_1471 ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D VFMJ11_A0873 ribosomal-protein-alanine acetyltransferase (Acetylating enzyme for N-of ribosomal protein S5) K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
D VFMJ11_0676 ribosomal protein S6 modification protein K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
D VFMJ11_1421 ribosomal-protein-serine acetyltransferase K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-]
D VFMJ11_0562 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
D VFMJ11_2507 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D VFMJ11_1939 prmB; protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
D VFMJ11_1702 cupin family protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
D VFMJ11_1875 ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D VFMJ11_0367 ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
D VFMJ11_0433 conserved hypothetical protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D VFMJ11_A0190 dead/deah box heliCase domain/helicase conserved domain/dbpa rna binding domain protein K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
D VFMJ11_A0421 cold-shock deAd box protein a K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D VFMJ11_0444 ATP-dependent RNA helicase SrmB K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7]
D VFMJ11_2452 rsgA_1; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D VFMJ11_A0031 rsgA_2; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D VFMJ11_0647 engA; ribosome-associated GTPase EngA K03977 engA; GTPase
D VFMJ11_A0558 ylqF; ribosome biogenesis GTP-binding protein YlqF K14540 rbgA; ribosome biogenesis GTPase A
D VFMJ11_1025 hflX_1; GTP-binding protein HflX K03665 hflX; GTPase
D VFMJ11_2435 hflX_2; GTP-binding protein HflX K03665 hflX; GTPase
D VFMJ11_2667 putative yrdC domain protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D VFMJ11_0102 GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D VFMJ11_0488 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D VFMJ11_0485 protein VV1_1694 K09748 rimP; ribosome maturation factor RimP
D VFMJ11_A0298 conserved hypothetical protein K14761 rlbA; ribosome-associated protein
D VFMJ11_0769 iojap family protein K09710 ybeB; ribosome-associated protein
D VFMJ11_0776 putative metalloprotease K07042 ybeY; probable rRNA maturation factor
D VFMJ11_0477 conserved hypothetical protein K07574 yhbY; RNA-binding protein
D VFMJ11_A1249 conserved hypothetical protein K14762 yibL; ribosome-associated protein
D VFMJ11_0371 conserved hypothetical protein K09889 yjgA; ribosome-associated protein
D VFMJ11_1369 ribosome modulation factor K03812 rmf; ribosome modulation factor
D VFMJ11_0377 raiA_1; ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor
D VFMJ11_0574 raiA_2; ribosomal subunit interface protein K05809 raiA; ribosome-associated inhibitor A
D VFMJ11_0798 ychF; GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase
D VFMJ11_1872 conserved hypothetical protein K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:vfm03016]
D VFMJ11_2355 multifunctional CCA protein K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D VFMJ11_2020 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D VFMJ11_0701 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D VFMJ11_0466 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D VFMJ11_0772 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D VFMJ11_1881 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D VFMJ11_0847 glnS; glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D VFMJ11_0877 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D VFMJ11_0452 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D VFMJ11_0990 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D VFMJ11_0539 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D VFMJ11_0648 conserved hypothetical protein K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D VFMJ11_1239 asnS; asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D VFMJ11_1295 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D VFMJ11_0946 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D VFMJ11_1710 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D VFMJ11_0401 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D VFMJ11_0644 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D VFMJ11_1318 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D VFMJ11_1319 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D VFMJ11_1854 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D VFMJ11_2398 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D VFMJ11_0099 dtd; D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D VFMJ11_1208 histidine triad nucleotide-binding protein 2 K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D VFMJ11_0422 trmB; tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D VFMJ11_0702 protein YaeB K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-]
D VFMJ11_1822 truA; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D VFMJ11_0489 tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D VFMJ11_2177 truD; tRNA pseudouridine synthase D K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D VFMJ11_0631 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D VFMJ11_2667 putative yrdC domain protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D VFMJ11_2437 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D VFMJ11_0002 trmE; tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D VFMJ11_2710 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D VFMJ11_2585 cysQ; 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D VFMJ11_0004 rnpA; ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D VFMJ11_0964 rnt; ribonuclease T K03683 rnt; ribonuclease T [EC:3.1.13.-]
D VFMJ11_0109 rph; ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D VFMJ11_A0420 rnb; exoribonuclease II K01147 rnb; exoribonuclease II [EC:3.1.13.1]
D VFMJ11_1833 rnd; ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5]
D VFMJ11_0569 ABC transporter ATP-binding protein K06020 ettA; energy-dependent translational throttle protein EttA
D VFMJ11_0015 glyQ; glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D VFMJ11_0016 glyS; glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D VFMJ11_2280 glutamyl-tRNA synthetase-related protein K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D VFMJ11_1922 ybaK; YbaK/ebsC protein K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D VFMJ11_0665 tRNA-specific adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D VFMJ11_0294 tRNA-dihydrouridine synthase A K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
D VFMJ11_2508 tRNA-dihydrouridine synthase B K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D VFMJ11_1758 tRNA-dihydrouridine synthase C K05541 dusC; tRNA-dihydrouridine synthase C [EC:1.-.-.-]
D VFMJ11_0778 miaB; tRNA-I(6)A37 thiotransferase enzyme MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D VFMJ11_0989 methyltransferase, putative K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
D VFMJ11_0988 methyltransferase, putative K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-]
D VFMJ11_A0478 protein SmtA K06219 smtA; tRNA 5-carboxymethoxyuridine methyltransferase [EC:2.1.1.-]
D VFMJ11_2560 trmA; tRNA (uracil-5-)-methyltransferase K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35]
D VFMJ11_0563 trmD; tRNA (guanine-N1)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D VFMJ11_0101 tRNA guanosine-2'-O-methyltransferase K00556 trmH; tRNA (guanosine-2'-O-)-methyltransferase [EC:2.1.1.34]
D VFMJ11_0629 RNA methyltransferase TrmH, group 1 K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200]
D VFMJ11_A1071 S-adenosylmethionine-dependent methyltransferase K06967 trmK; tRNA (adenine22-N1)-methyltransferase [EC:2.1.1.217]
D VFMJ11_2467 RNA methyltransferase, TrmH family, group 2 K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D VFMJ11_0445 methyltransferase K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223]
D VFMJ11_0627 tRNA pseudouridine synthase C K06175 truC; tRNA pseudouridine65 synthase [EC:5.4.99.26]
D VFMJ11_0259 ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D VFMJ11_1103 pseudouridine synthase Rlu family protein K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D VFMJ11_A0534 ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D VFMJ11_A0535 ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D VFMJ11_1912 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D VFMJ11_1387 tRNA s2C32 biosynthesis protein TtcA K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D VFMJ11_0019 sulfurtransferase TusA K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D VFMJ11_0219 dsrH; sulfur relay protein TusB/DsrH K07237 tusB; tRNA 2-thiouridine synthesizing protein B
D VFMJ11_0218 tusC; sulfur relay protein TusC/DsrF K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D VFMJ11_0217 tusD; sulfur relay protein TusD/DsrE K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D VFMJ11_1594 sulfurtransferase TusE (tRNA 2-thiouridine synthesizingprotein E) K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D VFMJ11_0633 iscA; iron-sulfur cluster assembly protein IscA K13628 iscA; iron-sulfur cluster assembly protein
D VFMJ11_2202 tRNA-modifying protein YgfZ K06980 ygfZ; tRNA-modifying protein YgfZ
D VFMJ11_1585 tRNA-(ms[2]io[6]A)-hydroxylase K06169 miaE; tRNA 2-(methylsulfanyl)-N6-isopentenyladenosine37 hydroxylase [EC:1.14.99.69]
D VFMJ11_1827 protein YfcK K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
D VFMJ11_2104 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D VFMJ11_1683 ExsB protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D VFMJ11_1240 queD; queuosine biosynthesis protein QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D VFMJ11_A0542 queuosine biosynthesis protein QueE K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D VFMJ11_0612 queF; queuine synthase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D VFMJ11_2441 iron-sulfur cluster binding protein, putative K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D VFMJ11_2103 tgt; queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D VFMJ11_0736 thiI; thiamine biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D VFMJ11_2079 tRNA(Ile)-lysidine synthase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D VFMJ11_A1263 transcriptional activator ChrR K06957 tmcA; tRNA(Met) cytidine acetyltransferase [EC:2.3.1.193]
D VFMJ11_1838 putative M22 peptidase YeaZ family protein K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D VFMJ11_2360 O-sialoglycoprotein endopeptidase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D VFMJ11_2440 conserved hypothetical protein K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D VFMJ11_0602 ThiF family protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D VFMJ11_2427 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D VFMJ11_0491 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:vfm03012]
D VFMJ11_A0587 yciH; putative translation initiation factor SUI1 K03113 EIF1; translation initiation factor 1
D VFMJ11_0487 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D VFMJ11_1296 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D VFMJ11_0208 ABC transporter ATP-binding protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D VFMJ11_2095 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts
D VFMJ11_0223 tuf_2; translation elongation factor Tu K02358 tuf; elongation factor Tu
D VFMJ11_2537 tuf_1; translation elongation factor Tu K02358 tuf; elongation factor Tu
D VFMJ11_0531 fusA_1; translation elongation factor G K02355 fusA; elongation factor G
D VFMJ11_0222 fusA_2; translation elongation factor G K02355 fusA; elongation factor G
D VFMJ11_0804 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D VFMJ11_2093 frr; ribosome recycling factor K02838 frr; ribosome recycling factor
D VFMJ11_0805 hemK; protein-(glutamine-N5) methyltransferase, release factor-specific K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D VFMJ11_0799 pth; peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D VFMJ11_1891 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D VFMJ11_1350 conserved hypothetical protein K02356 efp; elongation factor P
D VFMJ11_2460 efp; translation elongation factor P K02356 efp; elongation factor P
D VFMJ11_2455 putative lysyl-tRNA synthetase family protein GenX K04568 epmA; elongation factor P--(R)-beta-lysine ligase [EC:6.3.1.-]
D VFMJ11_2461 lysine 2,3-aminomutase K19810 epmB; L-lysine 2,3-aminomutase [EC:5.4.3.-]
D VFMJ11_1934 transporting ATPase K09906 epmC; elongation factor P hydroxylase [EC:1.14.-.-]
D VFMJ11_0451 peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
D VFMJ11_0501 prfC; peptide chain release factor 3 K02837 prfC; peptide chain release factor 3
D VFMJ11_A0453 conserved hypothetical protein K09890 arfA; alternative ribosome-rescue factor
D VFMJ11_A1250 class I peptide chain release factor K15034 yaeJ; ribosome-associated protein
C 03110 Chaperones and folding catalysts [BR:vfm03110]
D VFMJ11_1892 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA
D VFMJ11_0578 clpB; ATP-dependent chaperone ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D VFMJ11_0834 clpX; ATP-dependent Clp protease, ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D VFMJ11_2390 hslU; heat shock protein HslVU, ATPase subunit HslU K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D VFMJ11_0829 chaperone protein HtpG (Heat shock protein htpG) (High temperatureprotein G) K04079 HSP90A; molecular chaperone HtpG
D VFMJ11_2131 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D VFMJ11_0635 hscA; Fe-S protein assembly chaperone HscA K04044 hscA; molecular chaperone HscA
D VFMJ11_1288 conserved hypothetical protein K04046 yegD; hypothetical chaperone protein
D VFMJ11_0196 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D VFMJ11_1186 chaperone protein DnaJ (Heat shock protein J) (HSP40) K03686 dnaJ; molecular chaperone DnaJ
D VFMJ11_2130 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D VFMJ11_0278 DnaJ domain protein K05801 djlA; DnaJ like chaperone protein
D VFMJ11_0634 hscB; Fe-S protein assembly co-chaperone HscB K04082 hscB; molecular chaperone HscB
D VFMJ11_2600 hslO; chaperonin HslO K04083 hslO; molecular chaperone Hsp33
D VFMJ11_2133 grpE; co-chaperone GrpE K03687 GRPE; molecular chaperone GrpE
D VFMJ11_0013 small heat shock protein K04080 ibpA; molecular chaperone IbpA
D VFMJ11_2599 heat shock protein 15 K04762 hslR; ribosome-associated heat shock protein Hsp15
D VFMJ11_0195 groS; chaperonin GroS K04078 groES; chaperonin GroES
D VFMJ11_2336 protease DegQ K04771 degP; serine protease Do [EC:3.4.21.107]
D VFMJ11_0479 ftsH; ATP-dependent metallopeptidase HflB K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D VFMJ11_2705 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D VFMJ11_A0963 P pilus assembly protein, chaperone PapD K07346 fimC; fimbrial chaperone protein
D VFMJ11_2470 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D VFMJ11_2464 periplasmic protein CpxP K06006 cpxP; periplasmic protein CpxP/Spy
D VFMJ11_A0945 periplasmiC protein conserved in bacteria with histidine K09796 pccA; periplasmic copper chaperone A
D VFMJ11_1674 chaperone protein TorD K03533 torD; TorA specific chaperone
D VFMJ11_A0107 anaerobic dimethyl sulfoxide reductase chain YnfI K23349 dmsD; putative dimethyl sulfoxide reductase chaperone
D VFMJ11_A1128 chitobiase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D VFMJ11_2254 beta-hexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D VFMJ11_0741 peptidyl-prolyl cis-trans isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D VFMJ11_1711 peptidyl-prolyl cis-trans isomerase B K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D VFMJ11_1176 ppiB; peptidyl-prolyl cis-trans isomerase B K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D VFMJ11_0837 peptidyl-prolyl cis-trans isomerase D K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D VFMJ11_0215 fkbp-type peptidyl-prolyl cis-trans isomerase fkpa K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]
D VFMJ11_0301 fkbp-type 22 kda peptidyl-prolyl cis-trans isomerase K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8]
D VFMJ11_0468 fkbp-type 16 kda peptidyl-prolyl cis-trans isomerase K03774 slpA; FKBP-type peptidyl-prolyl cis-trans isomerase SlpA [EC:5.2.1.8]
D VFMJ11_0212 fkbp-type peptidyl-prolyl cis-trans isomerase slyd K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D VFMJ11_A0784 peptidyl-prolyl cis-trans isomerase C K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
D VFMJ11_0276 chaperone SurA K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D VFMJ11_0055 trxA; thioredoxin K03671 TXN; thioredoxin
D VFMJ11_0947 thioredoxin-2 K03672 trxC; thioredoxin 2 [EC:1.8.1.8]
D VFMJ11_0820 thioredoxin domain protein K05838 ybbN; putative thioredoxin
D VFMJ11_0928 grxA; glutaredoxin, GrxA family K03674 grxA; glutaredoxin 1
D VFMJ11_1693 grxB; glutaredoxin, GrxB family K03675 grxB; glutaredoxin 2
D VFMJ11_1589 glutaredoxin K03676 grxC; glutaredoxin 3
D VFMJ11_0961 putative glutaredoxin family protein K07390 grxD; monothiol glutaredoxin
D VFMJ11_0661 thiol:disulfide interchange protein DsbA K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D VFMJ11_2685 thiol:disulfide interchange protein DsbA K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D VFMJ11_1755 oxido-reductase K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9]
D VFMJ11_0449 thiol:disulfide interchange protein DsbC K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D VFMJ11_2477 thiol:disulfide interchange protein DsbD K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16]
D VFMJ11_1951 thiol:disulfide interchange protein TlpA K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE
D VFMJ11_1644 thiol:disulfide interchange protein TlpA K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE
C 04131 Membrane trafficking [BR:vfm04131]
D VFMJ11_0639 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D VFMJ11_A1086 integral membrane protein K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family
D VFMJ11_A1239 arsenical pump-driving ATPase K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D VFMJ11_0951 gap_1; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D VFMJ11_2370 pyk_1; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D VFMJ11_A0541 pyk_2; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D VFMJ11_0829 chaperone protein HtpG (Heat shock protein htpG) (High temperatureprotein G) K04079 HSP90A; molecular chaperone HtpG
C 04121 Ubiquitin system [BR:vfm04121]
C 03051 Proteasome [BR:vfm03051]
D VFMJ11_0829 chaperone protein HtpG (Heat shock protein htpG) (High temperatureprotein G) K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:vfm03032]
D VFMJ11_2071 rnhA; ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D VFMJ11_2515 DNA-binding protein HU-beta K05787 hupA; DNA-binding protein HU-alpha
D VFMJ11_0836 DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta
D VFMJ11_1320 ihfA; integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha
D VFMJ11_1885 ihfB; integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta
D VFMJ11_0009 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D VFMJ11_0288 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D VFMJ11_2363 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D VFMJ11_0344 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D VFMJ11_2081 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D VFMJ11_0010 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D VFMJ11_0402 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D VFMJ11_0770 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D VFMJ11_1861 DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D VFMJ11_2640 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D VFMJ11_2070 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D VFMJ11_2502 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D VFMJ11_A0387 DNA polymerase III, epsilon chain K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D VFMJ11_A0028 DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D VFMJ11_1811 DNA polymerase III subunit tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D VFMJ11_0499 DNA polymerase III, psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D VFMJ11_2082 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D VFMJ11_0072 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D VFMJ11_2025 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D VFMJ11_B0001 DNA replication terminus site-binding protein (Ter protein) K10748 tus; DNA replication terminus site-binding protein
D VFMJ11_2401 retron EC67 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D VFMJ11_0853 seqA; SeqA protein K03645 seqA; negative modulator of initiation of replication
D VFMJ11_1283 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D VFMJ11_0012 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D VFMJ11_2338 parC; DNA topoisomerase IV, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D VFMJ11_2339 parE; DNA topoisomerase IV, B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D VFMJ11_1124 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D VFMJ11_1761 DNA topoisomerase 3 K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
D VFMJ11_B0140 DNA topoisomerase domain protein K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:vfm03036]
D VFMJ11_2192 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D VFMJ11_1751 H-NS histone family protein K03746 hns; DNA-binding protein H-NS
D VFMJ11_B0192 hypothetical protein K03746 hns; DNA-binding protein H-NS
D VFMJ11_2515 DNA-binding protein HU-beta K05787 hupA; DNA-binding protein HU-alpha
D VFMJ11_0836 DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta
D VFMJ11_1320 ihfA; integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha
D VFMJ11_1885 ihfB; integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta
D VFMJ11_0009 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D VFMJ11_2325 phosphoheptose isomerase K12961 diaA; DnaA initiator-associating protein
D VFMJ11_2509 DNA-binding protein fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D VFMJ11_2436 protein hfq K03666 hfq; host factor-I protein
D VFMJ11_0942 leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D VFMJ11_A1225 leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D VFMJ11_1768 nucleoid-associated protein NdpA K06899 ndpA; nucleoid-associated protein
D VFMJ11_A0481 chromosome partition protein MukB K03632 mukB; chromosome partition protein MukB
D VFMJ11_A0480 chromosome partition protein MukE (Protein kicA) K03804 mukE; chromosome partition protein MukE
D VFMJ11_A0479 chromosome partition protein MukF (Protein kicB) K03633 mukF; chromosome partition protein MukF
D VFMJ11_2310 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D VFMJ11_2180 cell division protein FtsB K05589 ftsB; cell division protein FtsB
D VFMJ11_2575 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D VFMJ11_2319 peptidoglycan synthetase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D VFMJ11_0943 DNA translocase FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D VFMJ11_2320 ftsL; cell division protein FtsL K03586 ftsL; cell division protein FtsL
D VFMJ11_2311 cell division protein FtsQ K03589 ftsQ; cell division protein FtsQ
D VFMJ11_2314 ftsW; cell division protein FtsW K03588 ftsW; cell division protein FtsW
D VFMJ11_2574 cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D VFMJ11_2309 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D VFMJ11_2026 zipA; cell division protein ZipA K03528 zipA; cell division protein ZipA
D VFMJ11_2208 cell division protein ZapA K09888 zapA; cell division protein ZapA
D VFMJ11_0201 transcriptional regulator K09892 zapB; cell division protein ZapB
D VFMJ11_1364 conserved hypothetical protein K18657 zapC; cell division protein ZapC
D VFMJ11_2303 protein VV1_1620 K18778 zapD; cell division protein ZapD
D VFMJ11_2334 ATPase K06916 zapE; cell division protein ZapE
D VFMJ11_0302 opacity associated proteins OapA K07269 ytfB; cell division protein YtfB
D VFMJ11_2439 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D VFMJ11_A1247 acriflavine resistance protein E (Protein EnvC) K03585 acrA; membrane fusion protein, multidrug efflux system
D VFMJ11_2654 periplasmic component of efflux system K03585 acrA; membrane fusion protein, multidrug efflux system
D VFMJ11_1685 periplasmic component of efflux system K03585 acrA; membrane fusion protein, multidrug efflux system
D VFMJ11_1830 minC; septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D VFMJ11_1831 minD; septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D VFMJ11_1832 minE; cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor
D VFMJ11_1586 conserved hypothetical protein K13053 sulA; cell division inhibitor SulA
D VFMJ11_0121 HTH-type protein SlmA K05501 slmA; TetR/AcrR family transcriptional regulator
D VFMJ11_0853 seqA; SeqA protein K03645 seqA; negative modulator of initiation of replication
D VFMJ11_0363 Rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D VFMJ11_0364 mreC; rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC
D VFMJ11_0365 mreD; rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD
D VFMJ11_0766 mrdB_1; rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA
D VFMJ11_A0533 mrdB_2; rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA
D VFMJ11_2708 sporulation initiation inhibitor protein soj K03496 parA; chromosome partitioning protein
D VFMJ11_1961 chromosome partitioning protein ParA K03496 parA; chromosome partitioning protein
D VFMJ11_B0036 ParA family protein K03496 parA; chromosome partitioning protein
D VFMJ11_0111 chromosome partitioning protein ParA K03496 parA; chromosome partitioning protein
D VFMJ11_A1266 plasmid partition protein A K03496 parA; chromosome partitioning protein
D VFMJ11_B0010 partitioning protein A K03496 parA; chromosome partitioning protein
D VFMJ11_2707 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D VFMJ11_B0011 DNA-binding protein ParB, putative K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D VFMJ11_A1265 DNA-binding protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D VFMJ11_2338 parC; DNA topoisomerase IV, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D VFMJ11_2339 parE; DNA topoisomerase IV, B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D VFMJ11_2710 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D VFMJ11_2709 gidB; 16S rRNA methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D VFMJ11_2606 xerC; tyrosine recombinase XerC K03733 xerC; integrase/recombinase XerC
D VFMJ11_B0193 phage integrase, putative K03733 xerC; integrase/recombinase XerC
D VFMJ11_0448 xerD; tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD
D VFMJ11_1880 iron-sulfur cluster assembly/repair protein ApbC K03593 mrp; ATP-binding protein involved in chromosome partitioning
D VFMJ11_A0638 cell filamentation protein fic K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D VFMJ11_0073 ysxC; ribosome biogenesis GTP-binding protein YsxC K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:vfm03400]
D VFMJ11_A0211 methylated-dna--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D VFMJ11_A0876 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D VFMJ11_2219 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D VFMJ11_0421 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D VFMJ11_0968 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D VFMJ11_2305 mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D VFMJ11_A0942 dna-3-methyladenine glycosylase 1 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D VFMJ11_0128 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D VFMJ11_1692 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D VFMJ11_2220 endonuclease 4 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D VFMJ11_0450 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D VFMJ11_2025 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D VFMJ11_0072 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D VFMJ11_0332 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
D VFMJ11_0977 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
D VFMJ11_1746 uvrC; excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C
D VFMJ11_0066 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D VFMJ11_B0141 ATP-dependent DNA helicase Rep K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D VFMJ11_1067 UvrD/REP helicase, putative K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D VFMJ11_2530 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D VFMJ11_2529 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D VFMJ11_0250 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D VFMJ11_0103 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D VFMJ11_A0509 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D VFMJ11_0536 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D VFMJ11_2438 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D VFMJ11_0454 mutH; DNA mismatch repair endonuclease MutH K03573 mutH; DNA mismatch repair protein MutH
D VFMJ11_1575 exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D VFMJ11_0650 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D VFMJ11_0733 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D VFMJ11_2081 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D VFMJ11_0010 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D VFMJ11_0402 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D VFMJ11_0770 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D VFMJ11_1861 DNA polymerase III, delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D VFMJ11_2640 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D VFMJ11_2070 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D VFMJ11_2502 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D VFMJ11_A0387 DNA polymerase III, epsilon chain K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D VFMJ11_A0028 DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D VFMJ11_1811 DNA polymerase III subunit tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D VFMJ11_0499 DNA polymerase III, psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D VFMJ11_0344 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D VFMJ11_2401 retron EC67 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D VFMJ11_0596 recB; exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D VFMJ11_0595 recC; exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D VFMJ11_0597 recD; exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D VFMJ11_0538 recA; protein RecA K03553 recA; recombination protein RecA
D VFMJ11_0992 ruvA; holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D VFMJ11_0993 ruvB; holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D VFMJ11_0991 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D VFMJ11_2386 primosomal protein N' (ATP-dependent helicase PriA)(Replication factor Y) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D VFMJ11_1090 primosomal replication protein N' K04067 priC; primosomal replication protein N''
D VFMJ11_1243 exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50
D VFMJ11_1242 exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11
D VFMJ11_0530 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D VFMJ11_0011 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
D VFMJ11_2583 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D VFMJ11_2190 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D VFMJ11_1809 recR; recombination protein RecR K06187 recR; recombination protein RecR
D VFMJ11_2135 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D VFMJ11_2126 recombination-associated protein RdgC K03554 rdgC; recombination associated protein RdgC
D VFMJ11_0902 DNA or RNA helicase K19789 radD; DNA repair protein RadD
D VFMJ11_1283 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D VFMJ11_0012 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D VFMJ11_1124 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D VFMJ11_2515 DNA-binding protein HU-beta K05787 hupA; DNA-binding protein HU-alpha
D VFMJ11_0836 DNA-binding protein HU-beta K03530 hupB; DNA-binding protein HU-beta
D VFMJ11_2509 DNA-binding protein fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D VFMJ11_1320 ihfA; integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha
D VFMJ11_1885 ihfB; integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta
D VFMJ11_0068 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D VFMJ11_A1251 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D VFMJ11_1751 H-NS histone family protein K03746 hns; DNA-binding protein H-NS
D VFMJ11_B0192 hypothetical protein K03746 hns; DNA-binding protein H-NS
D VFMJ11_0753 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D VFMJ11_1346 protein UmuC K03502 umuC; DNA polymerase V
D VFMJ11_1347 DNA polymerase V subunit K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D VFMJ11_2566 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D VFMJ11_1748 DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7]
D VFMJ11_A1026 regulatory protein RecX K03565 recX; regulatory protein
D VFMJ11_2652 rep; ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D VFMJ11_1736 helicase IV K03658 helD; DNA helicase IV [EC:5.6.2.4]
D VFMJ11_1092 helicase c2 K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D VFMJ11_1839 ATP-dependent helicase, DinG family K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D VFMJ11_1281 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D VFMJ11_1280 ribonucleoside-diphosphate reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:vfm03029]
D VFMJ11_2330 cytochrome B K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D VFMJ11_0487 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D VFMJ11_1296 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D VFMJ11_2095 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts
D VFMJ11_0223 tuf_2; translation elongation factor Tu K02358 tuf; elongation factor Tu
D VFMJ11_2537 tuf_1; translation elongation factor Tu K02358 tuf; elongation factor Tu
D VFMJ11_0531 fusA_1; translation elongation factor G K02355 fusA; elongation factor G
D VFMJ11_0222 fusA_2; translation elongation factor G K02355 fusA; elongation factor G
D VFMJ11_2191 era; GTP-binding protein Era K03595 era; GTPase
D VFMJ11_1854 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D VFMJ11_0772 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D VFMJ11_0990 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D VFMJ11_0877 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D VFMJ11_B0148 DNA/RNA non-specific endonuclease K01173 ENDOG; endonuclease G, mitochondrial
D VFMJ11_0344 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D VFMJ11_2088 yaeT; outer membrane protein assembly complex, YaeT protein K07277 SAM50; outer membrane protein insertion porin family
D VFMJ11_2131 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D VFMJ11_2133 grpE; co-chaperone GrpE K03687 GRPE; molecular chaperone GrpE
D VFMJ11_0196 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D VFMJ11_0195 groS; chaperonin GroS K04078 groES; chaperonin GroES
D VFMJ11_1186 chaperone protein DnaJ (Heat shock protein J) (HSP40) K03686 dnaJ; molecular chaperone DnaJ
D VFMJ11_2130 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D VFMJ11_0631 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D VFMJ11_0634 hscB; Fe-S protein assembly co-chaperone HscB K04082 hscB; molecular chaperone HscB
D VFMJ11_0961 putative glutaredoxin family protein K07390 grxD; monothiol glutaredoxin
D VFMJ11_1880 iron-sulfur cluster assembly/repair protein ApbC K03593 mrp; ATP-binding protein involved in chromosome partitioning
D VFMJ11_0003 inner membrane protein OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase
D VFMJ11_A0944 SCO2 protein K07152 SCO1; protein SCO1
D VFMJ11_0829 chaperone protein HtpG (Heat shock protein htpG) (High temperatureprotein G) K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:vfm02000]
D VFMJ11_A0473 msbA; lipid A export permease/ATP-binding protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D VFMJ11_1028 ABC transporter, ATP-binding protein K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D VFMJ11_1029 multidrug resistance ABC transporter ATP-binding and permease protein K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D VFMJ11_A0556 ABC-type multidrug efflux pump K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump
D VFMJ11_A1259 type I protein secretion ATP-binding protein K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D VFMJ11_0938 ABC transporter, CydDC-E family, permease/ATP-binding protein CydC K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D VFMJ11_0939 cydD; ABC transporter, CydDC-E family, permease/ATP-binding protein CydD K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D VFMJ11_1367 ABC transporter ATP-binding protein uup K15738 uup; ABC transport system ATP-binding/permease protein
D VFMJ11_A0327 modA; molybdate ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D VFMJ11_A0328 modB; molybdate ABC transporter, permease protein K02018 modB; molybdate transport system permease protein
D VFMJ11_A0329 modC; molybdate ABC transporter, ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D VFMJ11_1486 extracellular tungstate binding protein K05772 tupA; tungstate transport system substrate-binding protein
D VFMJ11_1487 molybdenum transport system permease protein ModB K05773 tupB; tungstate transport system permease protein
D VFMJ11_1488 molybdenum transport ATP-binding protein ModC K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6]
D VFMJ11_2259 iron(III) ABC transporter, periplasmic binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D VFMJ11_2258 iron(III)-transport system permease protein K02011 afuB; iron(III) transport system permease protein
D VFMJ11_2257 Fe(3+) ions import ATP-binding protein FbpC 2 K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D VFMJ11_0255 thiB; thiamin/thiamin pyrophosphate ABC transporter, thiamin/thiamin pyrophospate-binding protein K02064 thiB; thiamine transport system substrate-binding protein
D VFMJ11_0256 thiP; thiamine/thiamine pyrophosphate ABC transporter, permease protein K02063 thiP; thiamine transport system permease protein
D VFMJ11_0257 thiQ; thiamine ABC transporter, ATP-binding protein K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]
D VFMJ11_1395 spermidine/putrescine-binding periplasmic protein K11069 potD; spermidine/putrescine transport system substrate-binding protein
D VFMJ11_1394 spermidine/putrescine-binding periplasmic protein K11069 potD; spermidine/putrescine transport system substrate-binding protein
D VFMJ11_1393 spermidine/putrescine ABC transporter membrane component K11070 potC; spermidine/putrescine transport system permease protein
D VFMJ11_1392 spermidine/putrescine transport system permease protein PotB K11071 potB; spermidine/putrescine transport system permease protein
D VFMJ11_1391 spermidine/putrescine import ATP-binding protein PotA K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D VFMJ11_A1197 ABC transporter substrate-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D VFMJ11_A1200 ABC transporter permease protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D VFMJ11_A1199 ABC transporter permease protein K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D VFMJ11_A1201 spermidine/putrescine import ATP-binding protein PotA K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D VFMJ11_0822 glycine betaine/L-proline-binding protein K02002 proX; glycine betaine/proline transport system substrate-binding protein
D VFMJ11_0823 glycine betaine/L-proline transport system permease protein ProW K02001 proW; glycine betaine/proline transport system permease protein
D VFMJ11_0824 glycine betaine transport ATP-binding protein opuAA K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D VFMJ11_A0357 putative thiamine biosynthesis protein K15598 thiY; putative hydroxymethylpyrimidine transport system substrate-binding protein
D VFMJ11_A0356 hydroxymethylpyrimidine transport system permease protein K15599 thiX; putative hydroxymethylpyrimidine transport system permease protein
D VFMJ11_A0355 hydroxymethylpyrimidine transport ATP-binding protein K15600 thiZ; putative hydroxymethylpyrimidine transport system ATP-binding protein
D VFMJ11_A0120 ABC transporter substrate-binding protein K05777 ynjB; putative thiamine transport system substrate-binding protein
D VFMJ11_A0119 ABC transporter permease protein K05778 ynjC; putative thiamine transport system permease protein
D VFMJ11_A0118 ABC transporter ATP-binding protein K05779 ynjD; putative thiamine transport system ATP-binding protein
D VFMJ11_A0926 periplasmic maltose-binding protein K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D VFMJ11_A0925 maltose transport system permease protein MalF K10109 malF; maltose/maltodextrin transport system permease protein
D VFMJ11_A0924 maltose transport system permease protein MalG K10110 malG; maltose/maltodextrin transport system permease protein
D VFMJ11_A0927 lactose transport ATP-binding protein LacK K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D VFMJ11_2149 multiple sugar-binding transport ATP-binding protein MsmK K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D VFMJ11_2146 maltose/maltodextrin-binding protein K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein
D VFMJ11_2147 maltose transport system permease protein MalF K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D VFMJ11_2148 maltose transport system permease protein MalG K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D VFMJ11_1543 D-ribose-binding periplasmic protein K10439 rbsB; ribose transport system substrate-binding protein
D VFMJ11_1542 ribose transport system permease protein RbsC K10440 rbsC; ribose transport system permease protein
D VFMJ11_1541 ribose import ATP-binding protein RbsA K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D VFMJ11_A0966 YbbM family integral membrane protei K02069 STAR2; UDP-glucose/iron transport system permease protein
D VFMJ11_0387 toluene tolerance protein TTG2C K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D VFMJ11_0386 toluene tolerance protein Ttg2B, putative K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D VFMJ11_0385 toluene tolerance protein TTG2A K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D VFMJ11_0388 toluene tolerance protein TTG2D K07323 mlaC; phospholipid transport system substrate-binding protein
D VFMJ11_0389 YrbB protein K07122 mlaB; phospholipid transport system transporter-binding protein
D VFMJ11_2123 phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D VFMJ11_1720 phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D VFMJ11_A0568 phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D VFMJ11_2122 phosphate transport system permease protein PstC K02037 pstC; phosphate transport system permease protein
D VFMJ11_1721 pstC; phosphate ABC transporter, permease protein PstC K02037 pstC; phosphate transport system permease protein
D VFMJ11_2121 phosphate transport system permease protein PstA K02038 pstA; phosphate transport system permease protein
D VFMJ11_1722 pstA; phosphate ABC transporter, permease protein PstA K02038 pstA; phosphate transport system permease protein
D VFMJ11_2120 pstB_2; phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D VFMJ11_1723 pstB_1; phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D VFMJ11_1626 general L-amino acid-binding periplasmic protein AapJ K09969 aapJ; general L-amino acid transport system substrate-binding protein
D VFMJ11_1627 general L-amino acid transport system permease protein AapQ K09970 aapQ; general L-amino acid transport system permease protein
D VFMJ11_1628 general L-amino acid transport system permease protein AapM K09971 aapM; general L-amino acid transport system permease protein
D VFMJ11_1629 general L-amino acid transport ATP-binding protein AapP K09972 aapP; general L-amino acid transport system ATP-binding protein [EC:7.4.2.1]
D VFMJ11_1697 lysine-arginine-ornithine-binding periplasmic protein K10022 aotJ; arginine/ornithine transport system substrate-binding protein
D VFMJ11_1695 octopine transport system permease protein OccM K10023 aotM; arginine/ornithine transport system permease protein
D VFMJ11_1696 membrane protein K10024 aotQ; arginine/ornithine transport system permease protein
D VFMJ11_1698 ATP-binding protein K10025 aotP; arginine/ornithine transport system ATP-binding protein [EC:7.4.2.1]
D VFMJ11_0703 D-methionine-binding lipoprotein MetQ K02073 metQ; D-methionine transport system substrate-binding protein
D VFMJ11_0704 D-methionine transport system permease protein MetI K02072 metI; D-methionine transport system permease protein
D VFMJ11_0705 metN; D-methionine ABC transporter, ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein
D VFMJ11_0008 cystine-binding protein K16961 yxeM; putative S-methylcysteine transport system substrate-binding protein
D VFMJ11_0007 cystine transport system permease protein K16962 yxeN; putative S-methylcysteine transport system permease protein
D VFMJ11_0006 L-cystine import ATP-binding protein TcyN K16963 yxeO; putative S-methylcysteine transport system ATP-binding protein
D VFMJ11_A0430 ABC transporter amino acid-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D VFMJ11_1171 glutamate-gated potassium channel K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D VFMJ11_A0429 amino acid ABC transporter permease protein K02029 ABC.PA.P; polar amino acid transport system permease protein
D VFMJ11_A0431 amino acid ABC transporter permease protein K02029 ABC.PA.P; polar amino acid transport system permease protein
D VFMJ11_A0432 general L-amino acid transport ATP-binding protein AapP K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D VFMJ11_1707 periplasmic oligopeptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D VFMJ11_1706 oligopeptide transport system permease protein OppB K15581 oppB; oligopeptide transport system permease protein
D VFMJ11_1705 oligopeptide transport system permease protein OppC K15582 oppC; oligopeptide transport system permease protein
D VFMJ11_1704 oligopeptide transport ATP-binding protein OppD K15583 oppD; oligopeptide transport system ATP-binding protein
D VFMJ11_1703 oligopeptide transport ATP-binding protein OppF K10823 oppF; oligopeptide transport system ATP-binding protein
D VFMJ11_A0347 peptide transport periplasmic protein SapA K19226 sapA; cationic peptide transport system substrate-binding protein
D VFMJ11_A0346 peptide transport system permease protein SapB K19227 sapB; cationic peptide transport system permease protein
D VFMJ11_A0345 peptide transport system permease protein SapC K19228 sapC; cationic peptide transport system permease protein
D VFMJ11_A0344 peptide transport system ATP-binding protein SapD K19229 sapD; cationic peptide transport system ATP-binding protein
D VFMJ11_A0343 glutathione import ATP-binding protein GsiA K19230 sapF; cationic peptide transport system ATP-binding protein
D VFMJ11_2247 chitooligosaccharide-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D VFMJ11_2644 dipeptide-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D VFMJ11_0700 oligopeptide-binding protein OppA K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D VFMJ11_2248 chitooligosaccharide transport system permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D VFMJ11_2643 dipeptide transport system permease protein DppB K02033 ABC.PE.P; peptide/nickel transport system permease protein
D VFMJ11_0699 oligopeptide transport system permease protein OppB K02033 ABC.PE.P; peptide/nickel transport system permease protein
D VFMJ11_2249 chitooligosaccharide transport system permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D VFMJ11_2642 dipeptide transport system permease protein DppC K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D VFMJ11_0698 oligopeptide transport system permease protein OppC K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D VFMJ11_2250 dipeptide transport ATP-binding protein DppD K02031 ddpD; peptide/nickel transport system ATP-binding protein
D VFMJ11_A0233 oligopeptide transport ATP-binding protein OppD K02031 ddpD; peptide/nickel transport system ATP-binding protein
D VFMJ11_0697 oligopeptide transport ATP-binding protein OppD K02031 ddpD; peptide/nickel transport system ATP-binding protein
D VFMJ11_2645 glutathione import ATP-binding protein GsiA K02031 ddpD; peptide/nickel transport system ATP-binding protein
D VFMJ11_0711 dipeptide transport ATP-binding protein DppD K02031 ddpD; peptide/nickel transport system ATP-binding protein
D VFMJ11_0712 oligopeptide transport ATP-binding protein AppF K02032 ddpF; peptide/nickel transport system ATP-binding protein
D VFMJ11_0695 NikE K02032 ddpF; peptide/nickel transport system ATP-binding protein
D VFMJ11_2251 oligopeptide transport ATP-binding protein AppF K02032 ddpF; peptide/nickel transport system ATP-binding protein
D VFMJ11_A0232 glutathione import ATP-binding protein GsiA K02032 ddpF; peptide/nickel transport system ATP-binding protein
D VFMJ11_0710 oligopeptide-binding protein OppA K13893 yejA; microcin C transport system substrate-binding protein
D VFMJ11_0708 ABC transporter, permease protein K13894 yejB; microcin C transport system permease protein
D VFMJ11_0709 inner membrane ABC transporter permease protein YejE K13895 yejE; microcin C transport system permease protein
D VFMJ11_A0195 ferrichrome-binding protein K23227 fhuD; ferric hydroxamate transport system substrate-binding protein
D VFMJ11_A0907 ferrichrome-binding protein K23227 fhuD; ferric hydroxamate transport system substrate-binding protein
D VFMJ11_A0196 ferrichrome transport system permease protein FhuB K23228 fhuB; ferric hydroxamate transport system permease protein
D VFMJ11_A0906 ferrichrome transport system permease protein FhuB K23228 fhuB; ferric hydroxamate transport system permease protein
D VFMJ11_A0194 ferrichrome transport ATP-binding protein FhuC K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16]
D VFMJ11_A0908 ferrichrome transport ATP-binding protein FhuC K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16]
D VFMJ11_1302 hemin-binding periplasmic protein HmuT K25132 hmuT; heme transport system substrate-binding protein
D VFMJ11_1301 HmuU protein K25133 hmuU; heme transport system permease protein
D VFMJ11_1300 hutD; hemin ABC transporter, ATP-binding protein HutD K10834 hmuV; heme transport system ATP-binding protein [EC:7.6.2.5]
D VFMJ11_A0954 ferric anguibactin-binding protein K25282 yclQ; iron-siderophore transport system substrate-binding protein
D VFMJ11_A0952 ferric anguibactin transport system permease protein FatC K25283 yclO; iron-siderophore transport system permease protein
D VFMJ11_A0953 conserved hypothetical protein K25284 yclN; iron-siderophore transport system permease protein
D VFMJ11_A0951 ferrichrome transport ATP-binding protein FhuC K25285 yclP; iron-siderophore transport system ATP-binding protein [EC:7.2.2.-]
D VFMJ11_A1095 ABC transporter, periplasmic component K25034 btuF; cobalamin transport system substrate-binding protein
D VFMJ11_A1094 ABC transporter, FecCD family K25027 btuC; cobalamin transport system permease protein
D VFMJ11_A1093 vitamin B12 transport ATP-binding protein BtuD K25028 btuD; cobalamin transport system ATP-binding protein [EC:7.6.2.8]
D VFMJ11_0868 high-affinity zinc uptake system protein ZnuA K09815 znuA; zinc transport system substrate-binding protein
D VFMJ11_2487 high-affinity zinc uptake system protein ZnuA K09815 znuA; zinc transport system substrate-binding protein
D VFMJ11_0866 high-affinity zinc uptake system membrane protein ZnuB K09816 znuB; zinc transport system permease protein
D VFMJ11_2489 high-affinity zinc uptake system membrane protein ZnuB K09816 znuB; zinc transport system permease protein
D VFMJ11_0867 zinc import ATP-binding protein ZnuC 1 K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D VFMJ11_2488 zinc import ATP-binding protein ZnuC 2 K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D VFMJ11_1662 NADH-ubiquinone oxidoreductase K16924 mtsT; energy-coupling factor transport system substrate-specific component
D VFMJ11_1660 ABC-type cobalt transport system, permease component K16785 ecfT; energy-coupling factor transport system permease protein
D VFMJ11_1661 ABC-type cobalt transport system, ATP-binding protein K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D VFMJ11_0404 permease YjgP/YjgQ family protein K07091 lptF; lipopolysaccharide export system permease protein
D VFMJ11_0405 permease YjgP/YjgQ family protein K11720 lptG; lipopolysaccharide export system permease protein
D VFMJ11_0379 ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D VFMJ11_A0511 lipoprotein releasing system transmembrane protein LolE K09808 lolC_E; lipoprotein-releasing system permease protein
D VFMJ11_A0513 lolE; lipoprotein releasing system, transmembrane protein LolE K09808 lolC_E; lipoprotein-releasing system permease protein
D VFMJ11_A0512 lolD; lipoprotein releasing system, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D VFMJ11_1954 conserved domain protein K02196 ccmD; heme exporter protein D
D VFMJ11_1955 heme chaperone heme-lyase K02195 ccmC; heme exporter protein C
D VFMJ11_1956 ccmB; heme exporter protein CcmB K02194 ccmB; heme exporter protein B
D VFMJ11_1957 ccmA; heme ABC exporter, ATP-binding protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D VFMJ11_2574 cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D VFMJ11_2575 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D VFMJ11_A1031 membrane protein, putative K01992 ABC-2.P; ABC-2 type transport system permease protein
D VFMJ11_2285 ABC transporter permease protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D VFMJ11_A0598 daunorubicin resistance transmembrane protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D VFMJ11_A0597 integral membrane protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D VFMJ11_A0139 export ABC transporter permease protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D VFMJ11_A1030 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D VFMJ11_A0138 daunorubicin resistance ATP-binding protein DrrA K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D VFMJ11_2286 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D VFMJ11_0923 ABC transporter permease protein K02004 ABC.CD.P; putative ABC transport system permease protein
D VFMJ11_0313 permease K02004 ABC.CD.P; putative ABC transport system permease protein
D VFMJ11_A0858 ABC transporter permease protein K02004 ABC.CD.P; putative ABC transport system permease protein
D VFMJ11_A1163 ABC transporter component, lysophospholipase L1 transport K02004 ABC.CD.P; putative ABC transport system permease protein
D VFMJ11_A1164 lipoprotein-releasing system ATP-binding protein LolD K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D VFMJ11_0314 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D VFMJ11_0922 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D VFMJ11_A0859 lipoprotein-releasing system ATP-binding protein LolD K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D VFMJ11_1185 bacitracin export ATP-binding protein BceA K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D VFMJ11_A0176 transporter, NadC family K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5
D VFMJ11_1125 transporter, divalent anion:sodium symporter family K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5
D VFMJ11_0460 sodium-dependent phosphate transporter K14683 SLC34A; solute carrier family 34 (sodium-dependent phosphate cotransporter)
D VFMJ11_1507 multidrug resistance protein NorM (Na+/drug antiporter) K26939 norM; MATE family, multidrug efflux pump
D VFMJ11_1408 mate efflux family protein K26939 norM; MATE family, multidrug efflux pump
D VFMJ11_2564 DNA-damage-inducible protein F K26937 dinF; MATE family, multidrug efflux pump
D VFMJ11_1245 adhesin K26937 dinF; MATE family, multidrug efflux pump
D VFMJ11_1345 Na+-driven multidrug efflux pump K26937 dinF; MATE family, multidrug efflux pump
D VFMJ11_0194 Na+-driven multidrug efflux pump K26937 dinF; MATE family, multidrug efflux pump
D VFMJ11_1548 mate efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D VFMJ11_A1034 multi antimicrobial extrusion protein MatE K26937 dinF; MATE family, multidrug efflux pump
D VFMJ11_A0059 sugar efflux transporter A K03291 MFS.SET; MFS transporter, SET family, sugar efflux transporter
D VFMJ11_A0620 oxalate/formate antiporter K08177 oxlT; MFS transporter, OFA family, oxalate/formate antiporter
D VFMJ11_2500 probable 3-phenylpropionic acid transporter K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter
D VFMJ11_A0067 hexose phosphate transport protein K07784 uhpT; MFS transporter, OPA family, hexose phosphate transport protein UhpT
D VFMJ11_0070 glpT; glycerol-3-phosphate transporter K02445 glpT; MFS transporter, OPA family, glycerol-3-phosphate transporter
D VFMJ11_A0063 regulatory protein UhpC K07783 uhpC; MFS transporter, OPA family, sugar phosphate sensor protein UhpC
D VFMJ11_2479 transporter, MFS superfamily K25223 arsJ; MFS transporter, APGE family, 1-arseno-3-phosphoglycerate exporter
D VFMJ11_0740 AmpG protein K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D VFMJ11_0919 bicyclomycin resistance protein (Sulfonamide resistance protein) K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D VFMJ11_0041 chloramphenicol resistance protein K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D VFMJ11_A0189 multidrug resistance protein D K08154 emrD; MFS transporter, DHA1 family, 2-module integral membrane pump EmrD
D VFMJ11_A0895 bicyclomycin resistance protein K08154 emrD; MFS transporter, DHA1 family, 2-module integral membrane pump EmrD
D VFMJ11_A1215 drug resistance transporter, EmrB/QacA family K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D VFMJ11_0917 multidrug resistance protein B K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D VFMJ11_A1099 major facilitator superfamily protein K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein
D VFMJ11_A1073 transporter, MFS superfamily K26602 yihN; MFS transporter, GlpU family, inner membrane protein
D VFMJ11_1035 transporter, MFS superfamily K08219 UMF2; MFS transporter, UMF2 family, putative MFS family transporter protein
D VFMJ11_2030 ptsP_2; phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D VFMJ11_0456 ptsP_1; phosphoenolpyruvate-protein phosphotransferase K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
D VFMJ11_2029 phosphocarrier protein HPr (Histidine-containing protein) K02784 ptsH; phosphocarrier protein HPr
D VFMJ11_0374 phosphocarrier protein HPr K08485 ptsO; phosphocarrier protein NPr
D VFMJ11_A1060 multiphosphoryl transfer protein K11183 fruB; multiphosphoryl transfer protein [EC:2.7.1.202]
D VFMJ11_2031 pts system N-acetylglucosamine-specific eiicba component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D VFMJ11_1859 ptsG; pts system, glucose-specific iibc component K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199]
D VFMJ11_A0911 pts system glucose-specific eiicba component K20118 ptsG; glucose PTS system EIICBA or EIICB component [EC:2.7.1.199]
D VFMJ11_0846 nagE_1; pts system, N-acetylglucosamine-specific iibc component K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D VFMJ11_A0487 nagE_2; pts system, N-acetylglucosamine-specific iibc component K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D VFMJ11_1846 malX; pts system, maltose and glucose-specific iibc component K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]
D VFMJ11_A1083 pts system arbutin-, cellobiose-, and salicin-specific eiibc component K02753 ascF; beta-glucoside (arbutin/salicin/cellobiose) PTS system EIICB component [EC:2.7.1.-]
D VFMJ11_1193 pts system N-acetylmuramic acid-specific eiibc component K11192 murP; N-acetylmuramic acid PTS system EIICB component [EC:2.7.1.192]
D VFMJ11_A0406 PTS system, fructose-specific IIA component K02768 fruB; fructose PTS system EIIA component [EC:2.7.1.202]
D VFMJ11_A1058 pts system fructose-specific eiibc component K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D VFMJ11_A0801 pts system, fructose specific iibc component K02769 fruAb; fructose PTS system EIIB component [EC:2.7.1.202]
D VFMJ11_A0802 pts system, fructose-specific iiabc component K11203 fryC; fructose-like PTS system EIIC or EIIBC or EIIABC component
D VFMJ11_A0407 pts system, fructose-specific iibc component K11203 fryC; fructose-like PTS system EIIC or EIIBC or EIIABC component
D VFMJ11_A0086 mannitol-specific cryptic phosphotransferase enzyme iia component K02798 cmtB; mannitol PTS system EIIA component [EC:2.7.1.197]
D VFMJ11_A0087 pts system mannitol-specific eiicba component K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]
D VFMJ11_0621 lichenan-specific phosphotransferase enzyme iia component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D VFMJ11_0618 BglE K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D VFMJ11_0617 lichenan permease iic component K02761 celB; cellobiose PTS system EIIC component
D VFMJ11_A1119 PTS system, N-acetylgalactosamine-specific IIA component K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-]
D VFMJ11_A1122 N-acetylgalactosamine-specific phosphotransferase enzyme iib component2 K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-]
D VFMJ11_A1121 PTS system, N-acetylgalactosamine-specific IIC component K02746 agaW; N-acetylgalactosamine PTS system EIIC component
D VFMJ11_A1120 PTS system, N-acetylgalactosamine-specific IID component K02747 agaE; N-acetylgalactosamine PTS system EIID component
D VFMJ11_A0157 PTS system, 3-keto-L-gulonate specific IIA component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D VFMJ11_A0155 PTS system, IIB component K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D VFMJ11_A0156 ascorbate-specific PTS system enzyme IIC K03475 ulaA; ascorbate PTS system EIIC component
D VFMJ11_0376 conserved hypothetical protein K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
D VFMJ11_A0800 PTS system, IIA component K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
D VFMJ11_1573 aquaporin Z K06188 aqpZ; aquaporin Z
D VFMJ11_A0270 glycerol uptake facilitator protein K02440 glpF; glycerol uptake facilitator
D VFMJ11_0956 ion transport protein K10716 kch; voltage-gated potassium channel
D VFMJ11_2348 potassium channel protein K10716 kch; voltage-gated potassium channel
D VFMJ11_2260 probable ammonium transporter, marine subtype K03320 amt; ammonium transporter, Amt family
D VFMJ11_A0948 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D VFMJ11_1465 stringent starvation protein A K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D VFMJ11_2328 stringent starvation protein A K03599 sspA; stringent starvation protein A
D VFMJ11_1513 transporter K07114 yfbK; Ca-activated chloride channel homolog
D VFMJ11_A0770 transporter K07114 yfbK; Ca-activated chloride channel homolog
D VFMJ11_A0769 von Willebrand factor, type A K07114 yfbK; Ca-activated chloride channel homolog
D VFMJ11_1514 von Willebrand factor, type A K07114 yfbK; Ca-activated chloride channel homolog
D VFMJ11_A1020 von Willebrand factor, type A K07114 yfbK; Ca-activated chloride channel homolog
D VFMJ11_A1021 transporter K07114 yfbK; Ca-activated chloride channel homolog
D VFMJ11_1630 SecY stabilizing membrane protein K19416 yccA; modulator of FtsH protease
D VFMJ11_A0940 formate transporter K06212 focA; formate transporter
D VFMJ11_A0425 formate/nitrite transporter family protein K06212 focA; formate transporter
D VFMJ11_0810 nitrite transporter K21993 fdhC; formate transporter
D VFMJ11_2213 mechanosensitive ion channel K03442 mscS; small conductance mechanosensitive channel
D VFMJ11_A1218 mechanosensitive ion channel K03442 mscS; small conductance mechanosensitive channel
D VFMJ11_1551 mechanosensitive ion channel K03442 mscS; small conductance mechanosensitive channel
D VFMJ11_A0445 mechanosensitive ion channel K16052 ynaI; MscS family membrane protein
D VFMJ11_A0409 mechanosensitive ion channel K16053 ybdG; miniconductance mechanosensitive channel
D VFMJ11_0373 mgtE; magnesium transporter K06213 mgtE; magnesium transporter
D VFMJ11_2154 magnesium transporter K06213 mgtE; magnesium transporter
D VFMJ11_A1168 Mg2+ transporter MgtE K06213 mgtE; magnesium transporter
D VFMJ11_0734 chemotaxis protein PomA K02556 motA; chemotaxis protein MotA
D VFMJ11_A0220 chemotaxis MotA protein K02556 motA; chemotaxis protein MotA
D VFMJ11_0735 flagellar motor protein K02557 motB; chemotaxis protein MotB
D VFMJ11_A0221 chemotaxis MotB protein K02557 motB; chemotaxis protein MotB
D VFMJ11_2430 sodium-type polar flagellar protein MotX K21217 motX; sodium-type polar flagellar protein MotX
D VFMJ11_0965 sodium-type flagellar protein MotY K21218 motY; sodium-type flagellar protein MotY
D VFMJ11_1304 TolQ protein K03561 exbB; biopolymer transport protein ExbB
D VFMJ11_A0227 TolQ protein K03561 exbB; biopolymer transport protein ExbB
D VFMJ11_A0903 TolQ protein K03561 exbB; biopolymer transport protein ExbB
D VFMJ11_A0904 TolQ protein K03561 exbB; biopolymer transport protein ExbB
D VFMJ11_A0226 TolQ protein K03561 exbB; biopolymer transport protein ExbB
D VFMJ11_A0228 biopolymer transport protein exbD2 K03559 exbD; biopolymer transport protein ExbD
D VFMJ11_A0902 biopolymer transport protein exbD2 K03559 exbD; biopolymer transport protein ExbD
D VFMJ11_0998 tolQ; protein TolQ K03562 tolQ; biopolymer transport protein TolQ
D VFMJ11_0999 TolR protein K03560 tolR; biopolymer transport protein TolR
D VFMJ11_A1032 CBS domain protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D VFMJ11_2516 CBS-domain containing protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D VFMJ11_0558 hemolysin K03699 tlyC; magnesium and cobalt exporter, CNNM family
D VFMJ11_0475 OmpU, outer membrane protein K08720 ompU; outer membrane protein OmpU
D VFMJ11_0623 outer membrane protein S K02024 lamB; maltoporin
D VFMJ11_2382 maltoporin K16077 scrY; sucrose porin
D VFMJ11_A1210 outer membrane protein K03286 TC.OOP; OmpA-OmpF porin, OOP family
D VFMJ11_A0009 OmpA/MotB domain protein K03286 TC.OOP; OmpA-OmpF porin, OOP family
D VFMJ11_A1258 outer membrane porin F K03286 TC.OOP; OmpA-OmpF porin, OOP family
D VFMJ11_A0265 outer membrane protein K03286 TC.OOP; OmpA-OmpF porin, OOP family
D VFMJ11_A0033 conserved hypothetical protein K16078 ail; attachment invasion locus protein
D VFMJ11_1946 long-chain fatty acid transport protein K06076 fadL; long-chain fatty acid transport protein
D VFMJ11_1637 long-chain fatty acid transport protein K06076 fadL; long-chain fatty acid transport protein
D VFMJ11_1945 long-chain fatty acid transport protein K06076 fadL; long-chain fatty acid transport protein
D VFMJ11_A0242 outer membrane protein P1 K06076 fadL; long-chain fatty acid transport protein
D VFMJ11_A0962 P pilus assembly protein, porin PapC K07347 fimD; outer membrane usher protein
D VFMJ11_2559 vitamin B12 receptor K16092 btuB; vitamin B12 transporter
D VFMJ11_1317 hemin receptor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D VFMJ11_A0370 hemin receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D VFMJ11_A0909 ferrichrome-iron receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D VFMJ11_A0224 FhuE receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D VFMJ11_A0085 TonB-dependent outer membrane receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D VFMJ11_A0201 ferric aerobactin receptor (Cloacin receptor) K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D VFMJ11_2344 TolC protein K12340 tolC; outer membrane protein
D VFMJ11_A1257 type I secretion outer membrane protein K12543 lapE; outer membrane protein, adhesin transport system
D VFMJ11_0341 periplasmic protein involved in polysaccharide export K20988 vpsN; polysaccharide biosynthesis/export protein VpsN
D VFMJ11_0153 putative polysaccharide export protein GfcE K01991 wza; polysaccharide biosynthesis/export protein
D VFMJ11_1012 carbohydrate-selective porin OprB K07267 oprB; porin
D VFMJ11_2088 yaeT; outer membrane protein assembly complex, YaeT protein K07277 SAM50; outer membrane protein insertion porin family
D VFMJ11_0646 yfgL; outer membrane assembly lipoprotein YfgL K17713 bamB; outer membrane protein assembly factor BamB
D VFMJ11_2051 lipoprotein-34 K07287 bamC; outer membrane protein assembly factor BamC
D VFMJ11_0575 competence lipoprotein ComL K05807 bamD; outer membrane protein assembly factor BamD
D VFMJ11_2136 small protein A K06186 bamE; outer membrane protein assembly factor BamE
D VFMJ11_0319 outer membrane protein K07278 tamA; translocation and assembly module TamA
D VFMJ11_0320 conserved hypothetical protein K09800 tamB; translocation and assembly module TamB
D VFMJ11_A1127 hypothetical outer membrane protein K22110 kdgM; oligogalacturonate-specific porin family protein
D VFMJ11_A0010 Ig domain protein, group 2 domain protein K21449 ata; trimeric autotransporter adhesin
D VFMJ11_A0011 Ig domain protein, group 2 domain protein K21449 ata; trimeric autotransporter adhesin
D VFMJ11_0380 lptA; lipopolysaccharide transport periplasmic protein LptA K09774 lptA; lipopolysaccharide export system protein LptA
D VFMJ11_0381 probable exported protein K11719 lptC; lipopolysaccharide export system protein LptC
D VFMJ11_0277 LPS-assembly protein (Organic solvent tolerance protein) K04744 lptD; LPS-assembly protein
D VFMJ11_0771 rare lipoprotein B K03643 lptE; LPS-assembly lipoprotein
D VFMJ11_A1000 cellulose synthase operon C protein K20543 bcsC; cellulose synthase operon protein C
D VFMJ11_0342 transcriptional regulator, TetR family K20920 vpsM; polysaccharide biosynthesis protein VpsM
D VFMJ11_0775 magnesium and cobalt efflux protein CorC K06189 corC; hemolysin (HlyC) family protein
D VFMJ11_1576 murein hydrolase exporter K06518 cidA; holin-like protein
D VFMJ11_A1102 putrescine transport protein K03756 potE; putrescine:ornithine antiporter
D VFMJ11_2163 cadaverine/lysine antiporter K03757 cadB; cadaverine:lysine antiporter
D VFMJ11_2463 ferrous iron efflux protein F K13283 fieF; ferrous-iron efflux pump FieF
D VFMJ11_A0494 heavy metal efflux pump, CzcA family K07787 cusA; copper/silver efflux system protein
D VFMJ11_2655 acriflavin resistance protein K18138 acrB; multidrug efflux pump
D VFMJ11_A1024 OqxB K18138 acrB; multidrug efflux pump
D VFMJ11_A1246 OqxB K18138 acrB; multidrug efflux pump
D VFMJ11_2240 acriflavin resistance plasma membrane protein K18989 vexF; multidrug efflux pump
D VFMJ11_0598 quaternary ammonium compound-resistance protein QacE K03297 emrE; small multidrug resistance pump
D VFMJ11_A0297 quaternary ammonium compound-resistance protein QacE K03297 emrE; small multidrug resistance pump
D VFMJ11_0067 rarD_2; RarD protein K05786 rarD; chloramphenicol-sensitive protein RarD
D VFMJ11_A0983 rarD_1; RarD protein K05786 rarD; chloramphenicol-sensitive protein RarD
D VFMJ11_0963 transport protein K07084 yuiF; putative amino acid transporter
D VFMJ11_2264 gluconate permease K03299 TC.GNTP; gluconate:H+ symporter, GntP family
D VFMJ11_1641 anaerobic C4-dicarboxylate transporter DcuA K07791 dcuA; anaerobic C4-dicarboxylate transporter DcuA
D VFMJ11_2475 anaerobic C4-dicarboxylate transporter DcuA K07791 dcuA; anaerobic C4-dicarboxylate transporter DcuA
D VFMJ11_1165 C4-dicarboxylate membrane transporter K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D VFMJ11_2170 C4-dicarboxylate membrane transporter K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D VFMJ11_1477 glycine betaine transporter K05020 opuD; glycine betaine transporter
D VFMJ11_0384 putative K+-dependent Na+/Ca+ exchanger family protein K07301 yrbG; cation:H+ antiporter
D VFMJ11_A0956 putP; sodium/proline symporter K11928 putP; sodium/proline symporter
D VFMJ11_2498 sodium/solute symporter family protein K14393 actP; cation/acetate symporter
D VFMJ11_A0930 serine/threonine transporter SstT (Na(+)/serine-threonine symporter) K07862 sstT; serine/threonine transporter
D VFMJ11_A0532 gltS_1; sodium/glutamate symporter K03312 gltS; glutamate:Na+ symporter, ESS family
D VFMJ11_A0554 gltS_2; sodium/glutamate symporter K03312 gltS; glutamate:Na+ symporter, ESS family
D VFMJ11_0925 nhaA; Na+/H+ antiporter NhaA K03313 nhaA; Na+:H+ antiporter, NhaA family
D VFMJ11_1754 nhaB; Na+/H+ antiporter NhaB K03314 nhaB; Na+:H+ antiporter, NhaB family
D VFMJ11_1333 nhaC_1; Na+/H+ antiporter NhaC K03315 nhaC; Na+:H+ antiporter, NhaC family
D VFMJ11_1766 nhaC_2; Na+/H+ antiporter NhaC K03315 nhaC; Na+:H+ antiporter, NhaC family
D VFMJ11_1750 Na+/H+ antiporter family protein K18218 tet35; tetracycline resistance efflux pump
D VFMJ11_0327 NhaP-type Na+/H+ and K+/H+ antiporter K03316 nhaP; Na+:H+ antiporter
D VFMJ11_0210 glutathione-regulated potassium-efflux system protein KefB K11747 kefB; glutathione-regulated potassium-efflux system protein KefB
D VFMJ11_A0295 glutathione-regulated potassium-efflux system protein KefC (K+/H+ antiporter) K11747 kefB; glutathione-regulated potassium-efflux system protein KefB
D VFMJ11_0209 glutathione-regulated potassium-efflux system ancillary protein K11748 kefG; glutathione-regulated potassium-efflux system ancillary protein KefG
D VFMJ11_A0296 general stress protein 14 K11748 kefG; glutathione-regulated potassium-efflux system ancillary protein KefG
D VFMJ11_0026 Trk system potassium uptake protein TrkH K03498 trkH; trk/ktr system potassium uptake protein
D VFMJ11_A0444 KtrB K03498 trkH; trk/ktr system potassium uptake protein
D VFMJ11_2678 TrkH K03498 trkH; trk/ktr system potassium uptake protein
D VFMJ11_A0443 KtrA K03499 trkA; trk/ktr system potassium uptake protein
D VFMJ11_2677 Trk system potassium uptake protein TrkA K03499 trkA; trk/ktr system potassium uptake protein
D VFMJ11_0534 cytosine permease K10974 codB; cytosine permease
D VFMJ11_2061 uraA; uracil permease K02824 uraA; uracil permease
D VFMJ11_0114 xanthine permease K16345 xanP; xanthine permease XanP
D VFMJ11_0756 inner membrane protein YicO K06901 pbuG; adenine/guanine/hypoxanthine permease
D VFMJ11_A0116 guanine-hypoxanthine permease K06901 pbuG; adenine/guanine/hypoxanthine permease
D VFMJ11_1247 tyrosine-specific transport protein K03834 tyrP; tyrosine-specific transport protein
D VFMJ11_1275 tyrosine-specific transport protein K03834 tyrP; tyrosine-specific transport protein
D VFMJ11_1248 tyrosine-specific transport protein K03834 tyrP; tyrosine-specific transport protein
D VFMJ11_1253 serine transporter K03837 sdaC; serine transporter
D VFMJ11_0657 inner membrane transport protein YhaO K26604 cyuP; cysteine uptake transport protein
D VFMJ11_1930 H+/Cl-exchange transporter ClcA K03281 clcA; chloride channel protein, CIC family
D VFMJ11_0031 chloride channel protein K03281 clcA; chloride channel protein, CIC family
D VFMJ11_0587 chromate transport protein K07240 chrA; chromate transporter
D VFMJ11_2287 sulfate transporter K03321 TC.SULP; sulfate permease, SulP family
D VFMJ11_1876 sulfate transporter K03321 TC.SULP; sulfate permease, SulP family
D VFMJ11_A1239 arsenical pump-driving ATPase K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D VFMJ11_A0991 arsB; arsenical-resistance protein K03325 ACR3; arsenite transporter
D VFMJ11_1134 anaerobic C4-dicarboxylate transporter K03326 TC.DCUC; C4-dicarboxylate transporter, DcuC family
D VFMJ11_1852 anaerobic C4-dicarboxylate transporter K03326 TC.DCUC; C4-dicarboxylate transporter, DcuC family
D VFMJ11_1601 putative cryptic C4-dicarboxylate transporter DcuD K03326 TC.DCUC; C4-dicarboxylate transporter, DcuC family
D VFMJ11_0464 mviN; integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase
D VFMJ11_A1182 transporter K13936 mdcF; malonate transporter and related proteins
D VFMJ11_A0897 homogentisate export protein K05834 rhtB; homoserine/homoserine lactone efflux protein
D VFMJ11_1413 transporter, LysE family K05834 rhtB; homoserine/homoserine lactone efflux protein
D VFMJ11_1226 lysine exporter protein K05835 rhtC; threonine efflux protein
D VFMJ11_A1056 threonine efflux protein K05835 rhtC; threonine efflux protein
D VFMJ11_A0713 translocator protein, LysE family K05835 rhtC; threonine efflux protein
D VFMJ11_A0694 translocator protein, LysE family K05835 rhtC; threonine efflux protein
D VFMJ11_1919 TctA protein K07793 tctA; putative tricarboxylic transport membrane protein
D VFMJ11_1918 tricarboxylic transport TctB K07794 tctB; putative tricarboxylic transport membrane protein
D VFMJ11_1917 tricarboxylic transport protein TctC K07795 tctC; putative tricarboxylic transport membrane protein
D VFMJ11_2055 transporter K03548 perM; putative permease
D VFMJ11_0071 inner membrane protein YhhQ K09125 yhhQ; queuosine precursor transporter
D VFMJ11_2496 membrane protein, putative K05595 marC; multiple antibiotic resistance protein
D VFMJ11_2314 ftsW; cell division protein FtsW K03588 ftsW; cell division protein FtsW
D VFMJ11_A1086 integral membrane protein K23541 TMEM165; Ca2+/H+ antiporter, TMEM165/GDT1 family
D VFMJ11_A1114 high-affinity iron permease K07243 FTR; high-affinity iron transporter
D VFMJ11_1305 TonB protein K03832 tonB; periplasmic protein TonB
D VFMJ11_A0901 TonB protein K03832 tonB; periplasmic protein TonB
D VFMJ11_A0229 TonB protein K03832 tonB; periplasmic protein TonB
D VFMJ11_1002 peptidoglycan-associated lipoprotein K03640 pal; peptidoglycan-associated lipoprotein
D VFMJ11_1000 tolA; protein TolA K03646 tolA; colicin import membrane protein
D VFMJ11_1001 tolB; Tol-Pal system beta propeller repeat protein TolB K03641 tolB; TolB protein
D VFMJ11_0552 oxaloacetate decarboxylase beta chain K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D VFMJ11_0551 oadA; oxaloacetate decarboxylase alpha subunit K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2]
D VFMJ11_0550 sodium pump decarboxylase, gamma subunit K01573 oadG; oxaloacetate decarboxylase (Na+ extruding) subunit gamma
D VFMJ11_2619 thiol:disulfide interchange protein DsbD K08344 scsB; suppressor for copper-sensitivity B
D VFMJ11_A0362 thiol:disulfide interchange protein DsbD K08344 scsB; suppressor for copper-sensitivity B
D VFMJ11_A0106 anaerobic dimethyl sulfoxide reductase chain a K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3]
D VFMJ11_A0105 dmsB; dimethylsulfoxide reductase, chain B K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B
D VFMJ11_A0104 dmsC; DMSO reductase anchor subunit K07308 dmsC; anaerobic dimethyl sulfoxide reductase subunit C
D VFMJ11_A0336 torA; trimethylamine-N-oxide reductase TorA K07811 torA; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D VFMJ11_A0335 torC; trimethylamine-N-oxide reductase c-type cytochrome TorC K03532 torC; trimethylamine-N-oxide reductase (cytochrome c), cytochrome c-type subunit TorC
D VFMJ11_1674 chaperone protein TorD K03533 torD; TorA specific chaperone
D VFMJ11_A0223 cytoChrome c-type protein TorY K07821 torY; trimethylamine-N-oxide reductase (cytochrome c), cytochrome c-type subunit TorY
D VFMJ11_A1109 biotin sulfoxide reductase K07812 torZ; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D VFMJ11_A0222 trimethylamiNe-n-oxide reductase 2 K07812 torZ; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D VFMJ11_0916 multidrug resistance protein A K03543 emrA; membrane fusion protein, multidrug efflux system
D VFMJ11_A1214 multidrug resistance protein A K03543 emrA; membrane fusion protein, multidrug efflux system
D VFMJ11_A0493 copper/silver resistance periplasmic protein K07798 cusB; membrane fusion protein, copper/silver efflux system
D VFMJ11_A1262 type I secretion adaptor protein K12542 lapC; membrane fusion protein, adhesin transport system
D VFMJ11_A0395 acriflavin resistance periplasmic protein K18302 mexJ; membrane fusion protein, multidrug efflux system
D VFMJ11_A1247 acriflavine resistance protein E (Protein EnvC) K03585 acrA; membrane fusion protein, multidrug efflux system
D VFMJ11_2654 periplasmic component of efflux system K03585 acrA; membrane fusion protein, multidrug efflux system
D VFMJ11_1685 periplasmic component of efflux system K03585 acrA; membrane fusion protein, multidrug efflux system
D VFMJ11_2241 periplasmic component of efflux system K18990 vexE; membrane fusion protein, multidrug efflux system
D VFMJ11_0340 chain length regulator K16554 exoP; polysaccharide biosynthesis transport protein [EC:2.7.10.3]
D VFMJ11_A1155 chain length regulator K25590 epsF; protein tyrosine kinase modulator
D VFMJ11_0156 tyrosine-protein kinase wzc K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3]
D VFMJ11_0871 conserved domain protein K04758 feoA; ferrous iron transport protein A
D VFMJ11_0872 feoB; ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B
D VFMJ11_0873 conserved hypothetical protein K10123 feoC; putative ferrous iron transport protein C
D VFMJ11_0083 universal stress protein UspB K06144 uspB; universal stress protein B
D VFMJ11_1952 ccmF_2; cytochrome c-type biogenesis protein CcmF K02198 ccmF; cytochrome c-type biogenesis protein CcmF
D VFMJ11_1645 ccmF_1; cytochrome c-type biogenesis protein CcmF K02198 ccmF; cytochrome c-type biogenesis protein CcmF
D VFMJ11_1935 conserved membrane protein, SapB/MtgC family K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein
D VFMJ11_1752 hypothetical outer membrane protein K07274 mipA; MipA family protein
D VFMJ11_1658 MltA-interacting MipA family protein K07274 mipA; MipA family protein
C 02044 Secretion system [BR:vfm02044]
D VFMJ11_2344 TolC protein K12340 tolC; outer membrane protein
D VFMJ11_A1259 type I protein secretion ATP-binding protein K12541 lapB; ATP-binding cassette, subfamily C, bacterial LapB
D VFMJ11_A1262 type I secretion adaptor protein K12542 lapC; membrane fusion protein, adhesin transport system
D VFMJ11_A1257 type I secretion outer membrane protein K12543 lapE; outer membrane protein, adhesin transport system
D VFMJ11_2354 general secretion pathway protein A K02450 gspA; general secretion pathway protein A
D VFMJ11_2353 general secretion pathway protein B K02451 gspB; general secretion pathway protein B
D VFMJ11_2598 gspC; general secretion pathway protein C K02452 gspC; general secretion pathway protein C
D VFMJ11_2597 gspD; general secretion pathway protein D K02453 gspD; general secretion pathway protein D
D VFMJ11_2596 gspE; general secretory pathway protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D VFMJ11_2595 gspF; general secretion pathway protein F K02455 gspF; general secretion pathway protein F
D VFMJ11_2594 gspG; general secretion pathway protein G K02456 gspG; general secretion pathway protein G
D VFMJ11_2593 gspH; general secretion pathway protein H K02457 gspH; general secretion pathway protein H
D VFMJ11_2592 gspI; general secretion pathway protein I K02458 gspI; general secretion pathway protein I
D VFMJ11_2591 gspJ; general secretion pathway protein J K02459 gspJ; general secretion pathway protein J
D VFMJ11_2590 gspK; general secretion pathway protein K K02460 gspK; general secretion pathway protein K
D VFMJ11_2589 gspL; general secretion pathway protein L K02461 gspL; general secretion pathway protein L
D VFMJ11_2588 general secretion pathway protein M (Cholera toxin secretion protein epsM) K02462 gspM; general secretion pathway protein M
D VFMJ11_2587 gspN; bacterial type II secretion system protein N K02463 gspN; general secretion pathway protein N
D VFMJ11_2301 bacterial Peptidase A24 N-terminal domain family protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D VFMJ11_2298 fimbrial protein (Pilin) (Strain P1) K02650 pilA; type IV pilus assembly protein PilA
D VFMJ11_2299 pilB; type IV-A pilus assembly ATPase PilB K02652 pilB; type IV pilus assembly protein PilB
D VFMJ11_2300 type IV pilus assembly protein TapC K02653 pilC; type IV pilus assembly protein PilC
D VFMJ11_0582 fimbrial protein pilin K02655 pilE; type IV pilus assembly protein PilE
D VFMJ11_0641 pilF; type IV pilus biogenesis/stability protein PilW K02656 pilF; type IV pilus assembly protein PilF
D VFMJ11_2409 pili assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM
D VFMJ11_2408 pili assembly protein PilN K02663 pilN; type IV pilus assembly protein PilN
D VFMJ11_2407 pili assembly protein PilO K02664 pilO; type IV pilus assembly protein PilO
D VFMJ11_2406 pilus expression protein K02665 pilP; type IV pilus assembly protein PilP
D VFMJ11_2405 fimbrial assembly protein PilQ K02666 pilQ; type IV pilus assembly protein PilQ
D VFMJ11_0431 twitching mobility protein K02669 pilT; twitching motility protein PilT
D VFMJ11_0432 pili retraction protein PilU K02670 pilU; twitching motility protein PilU
D VFMJ11_0586 Tfp pilus assembly protein PilV K02671 pilV; type IV pilus assembly protein PilV
D VFMJ11_0584 prepilin-type N-cleavage/methylation domain protein K02672 pilW; type IV pilus assembly protein PilW
D VFMJ11_0583 Tfp pilus assembly protein FimT K08084 fimT; type IV fimbrial biogenesis protein FimT
D VFMJ11_1823 latent nuclear antigen K08086 fimV; pilus assembly protein FimV
D VFMJ11_0513 conserved hypothetical protein K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D VFMJ11_A0253 conserved hypothetical protein K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D VFMJ11_0514 cpaB_1; Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB
D VFMJ11_A0254 cpaB_2; Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB
D VFMJ11_0515 general secretion pathway protein D K02280 cpaC; pilus assembly protein CpaC
D VFMJ11_A0255 general secretion pathway protein D K02280 cpaC; pilus assembly protein CpaC
D VFMJ11_A0257 ATPase involved in chromosome partitioning K02282 cpaE; pilus assembly protein CpaE
D VFMJ11_0517 ATPase involved in chromosome partitioning K02282 cpaE; pilus assembly protein CpaE
D VFMJ11_0518 TadA K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D VFMJ11_A0258 TadA K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D VFMJ11_A0259 Flp pilus assembly protein TadB K12510 tadB; tight adherence protein B
D VFMJ11_0519 Flp pilus assembly protein TadB K12510 tadB; tight adherence protein B
D VFMJ11_A0260 bipartite nuclear localization signal containing protein K12511 tadC; tight adherence protein C
D VFMJ11_0520 bipartite nuclear localization signal containing protein K12511 tadC; tight adherence protein C
D VFMJ11_0521 TPR-repeat secretory protein K12512 tadD; tight adherence protein D
D VFMJ11_A0261 TPR-repeat secretory protein K12512 tadD; tight adherence protein D
D VFMJ11_A0262 conserved hypothetical protein K12513 tadE; tight adherence protein E
D VFMJ11_0522 conserved hypothetical protein K12513 tadE; tight adherence protein E
D VFMJ11_0523 ATP/GTP-binding site motif A K12514 tadF; tight adherence protein F
D VFMJ11_A0263 ATP/GTP-binding site motif A K12514 tadF; tight adherence protein F
D VFMJ11_0524 conserved hypothetical protein K12515 tadG; tight adherence protein G
D VFMJ11_A0264 conserved hypothetical protein K12515 tadG; tight adherence protein G
D VFMJ11_0512 conserved domain protein K02651 flp; pilus assembly protein Flp/PilA
D VFMJ11_A0252 conserved domain protein K02651 flp; pilus assembly protein Flp/PilA
D VFMJ11_0357 MshA, mannose-sensitive haemaglutinin K10924 mshA; MSHA pilin protein MshA
D VFMJ11_0356 msha pilin protein mshb K10925 mshB; MSHA pilin protein MshB
D VFMJ11_0358 prepilin-type N-cleavage/methylation domain protein K10926 mshC; MSHA pilin protein MshC
D VFMJ11_A0103 prokaryotic N-methylation motif domain protein K10926 mshC; MSHA pilin protein MshC
D VFMJ11_0359 MshD K10927 mshD; MSHA pilin protein MshD
D VFMJ11_A0102 MshD K10927 mshD; MSHA pilin protein MshD
D VFMJ11_0353 type IV pilus assembly protein TapB K12276 mshE; MSHA biogenesis protein MshE
D VFMJ11_0355 conserved hypothetical protein K12277 mshF; MSHA biogenesis protein MshF
D VFMJ11_0354 general secretion pathway protein F K12278 mshG; MSHA biogenesis protein MshG
D VFMJ11_0347 conserved hypothetical protein K12279 mshI; MSHA biogenesis protein MshI
D VFMJ11_0348 msha biogenesis protein mshj K12280 mshJ; MSHA biogenesis protein MshJ
D VFMJ11_0349 conserved hypothetical protein K12281 mshK; MSHA biogenesis protein MshK
D VFMJ11_0350 general secretion pathway protein D K12282 mshL; MSHA biogenesis protein MshL
D VFMJ11_0351 general secretion pathway protein A K12283 mshM; MSHA biogenesis protein MshM
D VFMJ11_0352 tetratricopeptide repeat family protein K12284 mshN; MSHA biogenesis protein MshN
D VFMJ11_0360 prokaryotic N-methylation motif domain protein K12285 mshO; MSHA biogenesis protein MshO
D VFMJ11_A0101 MshO K12285 mshO; MSHA biogenesis protein MshO
D VFMJ11_A0100 MshP K12286 mshP; MSHA biogenesis protein MshP
D VFMJ11_0361 msha biogenesis protein mshp K12286 mshP; MSHA biogenesis protein MshP
D VFMJ11_A0099 MshQ K12287 mshQ; MSHA biogenesis protein MshQ
D VFMJ11_0362 conserved hypothetical protein K12287 mshQ; MSHA biogenesis protein MshQ
D VFMJ11_0428 integral membrane protein K02221 yggT; YggT family protein
D VFMJ11_0839 come operon protein 1 K02237 comEA; competence protein ComEA
D VFMJ11_A1035 RibG K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D VFMJ11_A0472 DNA internalization-related competence protein ComEC/Rec2 K02238 comEC; competence protein ComEC
D VFMJ11_1969 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D VFMJ11_1971 flhB; flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D VFMJ11_1984 fliF; flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D VFMJ11_1982 flagellar assembly protein K02411 fliH; flagellar assembly protein FliH
D VFMJ11_1981 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D VFMJ11_1976 flagellar motor switch phosphatase FliY K02417 fliN; flagellar motor switch protein FliN
D VFMJ11_1975 flagellar protein FliO K02418 fliO; flagellar protein FliO/FliZ
D VFMJ11_1974 flagellar biosynthesis protein K02419 fliP; flagellar biosynthesis protein FliP
D VFMJ11_1973 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D VFMJ11_1972 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D VFMJ11_0449 thiol:disulfide interchange protein DsbC K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D VFMJ11_B0118 twitching motility protein PilT K12203 dotB; defect in organelle trafficking protein DotB [EC:7.2.4.8]
D VFMJ11_B0119 hypothetical protein K12204 dotC; defect in organelle trafficking protein DotC
D VFMJ11_B0122 hypothetical protein K12206 icmB; intracellular multiplication protein IcmB [EC:7.2.4.8]
D VFMJ11_B0125 conserved hypothetical protein K12212 icmJ; intracellular multiplication protein IcmJ
D VFMJ11_B0130 hypothetical protein K12213 icmK; intracellular multiplication protein IcmK
D VFMJ11_B0138 hypothetical protein K12217 icmO; intracellular multiplication protein IcmO [EC:7.2.4.8]
D VFMJ11_B0136 hypothetical protein K12218 icmP; intracellular multiplication protein IcmP
D VFMJ11_1075 icmF_1; type VI secretion protein IcmF K11891 impL; type VI secretion system protein ImpL
D VFMJ11_A0817 icmF_2; type VI secretion protein IcmF K11891 impL; type VI secretion system protein ImpL
D VFMJ11_1076 hypothetical membrane associated protein K11892 impK; type VI secretion system protein ImpK
D VFMJ11_A0808 type IV / VI secretion system protein, DotU family K11892 impK; type VI secretion system protein ImpK
D VFMJ11_1077 type VI secretion protein, family K11893 impJ; type VI secretion system protein ImpJ
D VFMJ11_A0807 type VI secretion protein, family K11893 impJ; type VI secretion system protein ImpJ
D VFMJ11_A0819 type VI secretion protein, family K11895 impH; type VI secretion system protein ImpH
D VFMJ11_1083 type VI secretion protein, family K11895 impH; type VI secretion system protein ImpH
D VFMJ11_A0820 vasA_2; type VI secretion protein, family K11896 impG; type VI secretion system protein ImpG
D VFMJ11_1084 vasA_1; type VI secretion protein, family K11896 impG; type VI secretion system protein ImpG
D VFMJ11_A0822 type VI secretion protein, EvpB/family K11900 impC; type VI secretion system protein ImpC
D VFMJ11_1086 type VI secretion protein, EvpB/family K11900 impC; type VI secretion system protein ImpC
D VFMJ11_A0823 type VI secretion protein, family K11901 impB; type VI secretion system protein ImpB
D VFMJ11_1087 type VI secretion protein, family K11901 impB; type VI secretion system protein ImpB
D VFMJ11_A1070 hemolysin co-regulated protein K11903 hcp; type VI secretion system secreted protein Hcp
D VFMJ11_1495 BfdA K11903 hcp; type VI secretion system secreted protein Hcp
D VFMJ11_A0831 BfdA K11903 hcp; type VI secretion system secreted protein Hcp
D VFMJ11_A1069 VgrG protein K11904 vgrG; type VI secretion system secreted protein VgrG
D VFMJ11_1494 Rhs element Vgr family protein K11904 vgrG; type VI secretion system secreted protein VgrG
D VFMJ11_A0830 Rhs element Vgr family protein K11904 vgrG; type VI secretion system secreted protein VgrG
D VFMJ11_1309 VgrG protein K11904 vgrG; type VI secretion system secreted protein VgrG
D VFMJ11_1085 type VI secretion system lysozyme-related protein K11905 K11905; type VI secretion system protein
D VFMJ11_A0821 type VI secretion system lysozyme-related protein K11905 K11905; type VI secretion system protein
D VFMJ11_1078 type VI secretion lipoprotein, family K11906 vasD; type VI secretion system protein VasD
D VFMJ11_A0806 type VI secretion lipoprotein, family K11906 vasD; type VI secretion system protein VasD
D VFMJ11_1082 clpV_1; type VI secretion ATPase, ClpV1 family K11907 vasG; type VI secretion system protein VasG
D VFMJ11_A0832 clpV_2; type VI secretion ATPase, ClpV1 family K11907 vasG; type VI secretion system protein VasG
D VFMJ11_1088 type VI secretion-associated protein, family K11910 vasJ; type VI secretion system protein VasJ
D VFMJ11_A0824 type VI secretion-associated protein, family K11910 vasJ; type VI secretion system protein VasJ
D VFMJ11_A0816 ImpA-related N-terminal family protein K11911 vasL; type VI secretion system protein VasL
D VFMJ11_A0805 type VI secretion system FHA domain protein K11894 impI; type VI secretion system protein ImpI
D VFMJ11_1079 type VI secretion system FHA domain protein K11894 impI; type VI secretion system protein ImpI
D VFMJ11_1081 transcriptional regulator K11914 sfa2; sigma-54 dependent transcriptional regulator
D VFMJ11_A0833 nitric oxide reductase regulator K11914 sfa2; sigma-54 dependent transcriptional regulator
D VFMJ11_1074 protein phosphatase 2C K11915 stp1; serine/threonine protein phosphatase Stp1 [EC:3.1.3.16]
D VFMJ11_1073 serine/threonine protein kinase K11916 stk1; serine/threonine-protein kinase Stk1 [EC:2.7.11.-]
D VFMJ11_A0963 P pilus assembly protein, chaperone PapD K07346 fimC; fimbrial chaperone protein
D VFMJ11_A0962 P pilus assembly protein, porin PapC K07347 fimD; outer membrane usher protein
D VFMJ11_2527 minor curlin subunit CsgB K04335 csgB; minor curlin subunit
D VFMJ11_2525 conserved hypothetical protein K04337 csgE; curli production assembly/transport component CsgE
D VFMJ11_2524 curli production assembly/transport component CsgF K04338 csgF; curli production assembly/transport component CsgF
D VFMJ11_2523 curli production assembly/transport component CsgG K06214 csgG; curli production assembly/transport component CsgG
D VFMJ11_2306 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D VFMJ11_2470 secB; protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB
D VFMJ11_0913 secD_1; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D VFMJ11_2101 secD_2; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D VFMJ11_2536 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D VFMJ11_2100 secF_2; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D VFMJ11_0912 secF_1; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D VFMJ11_0482 translocase K03075 secG; preprotein translocase subunit SecG
D VFMJ11_0245 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D VFMJ11_0560 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D VFMJ11_2576 cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor
D VFMJ11_2102 yajC; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D VFMJ11_0003 inner membrane protein OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase
D VFMJ11_0048 twin arginine-targeting protein translocase TatA K03116 tatA; sec-independent protein translocase protein TatA
D VFMJ11_0049 sec-independent translocase K03117 tatB; sec-independent protein translocase protein TatB
D VFMJ11_0050 tatC; twin arginine-targeting protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:vfm02042]
D VFMJ11_0594 tellurite resistance protein K11041 eta; exfoliative toxin A/B
D VFMJ11_A1032 CBS domain protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D VFMJ11_2516 CBS-domain containing protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D VFMJ11_0558 hemolysin K03699 tlyC; magnesium and cobalt exporter, CNNM family
D VFMJ11_2679 hemolysin-3 K11068 hlyIII; hemolysin III
C 02022 Two-component system [BR:vfm02022]
D VFMJ11_2124 phoR; phosphate regulon sensor kinase PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D VFMJ11_2125 phoB; phosphate regulon transcriptional regulatory protein PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D VFMJ11_0527 sensor protein PhoQ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D VFMJ11_0526 sensor protein PhoQ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D VFMJ11_0528 transcriptional regulatory protein PhoP K07660 phoP; two-component system, OmpR family, response regulator PhoP
D VFMJ11_0113 osmolarity sensor protein EnvZ K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D VFMJ11_0112 protein PetR K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D VFMJ11_2466 sensor protein CpxA K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D VFMJ11_2465 transcriptional regulatory protein CpxR K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D VFMJ11_A0212 sensor protein IrlS K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D VFMJ11_A0213 transcriptional activator protein IrlR K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
D VFMJ11_1733 torS; tmao reductase sytem sensor tors K07647 torS; two-component system, OmpR family, sensor histidine kinase TorS [EC:2.7.13.3]
D VFMJ11_1673 TorCAD operon transcriptional regulatory protein TorR K07772 torR; two-component system, OmpR family, torCAD operon response regulator TorR
D VFMJ11_2228 aerobic respiration control sensor protein ArcB K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D VFMJ11_2226 aerobic respiration control protein ArcA K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA
D VFMJ11_A0485 probable transcriptional regulatory protein YedW K02483 K02483; two-component system, OmpR family, response regulator
D VFMJ11_1479 FeuP K02483 K02483; two-component system, OmpR family, response regulator
D VFMJ11_2042 nitrate/nitrite sensor protein NarQ K07674 narQ; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarQ [EC:2.7.13.3]
D VFMJ11_2043 nitrate/nitrite response regulator protein NarP K07685 narP; two-component system, NarL family, nitrate/nitrite response regulator NarP
D VFMJ11_A0065 sensor protein UhpB K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D VFMJ11_A0066 transcriptional regulatory protein UhpA K07686 uhpA; two-component system, NarL family, uhpT operon response regulator UhpA
D VFMJ11_2187 signal transduction histidine-protein kinase BarA K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D VFMJ11_1747 response regulator UvrY K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D VFMJ11_1924 sensor kinase DpiB (Sensor kinase citA) K02476 K02476; two-component system, CitB family, sensor kinase [EC:2.7.13.3]
D VFMJ11_1923 transcriptional regulatory protein CitT K02475 K02475; two-component system, CitB family, response regulator
D VFMJ11_1229 signal transduction histidine kinase, LytS K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D VFMJ11_1228 two-component response regulator K02477 K02477; two-component system, LytTR family, response regulator
D VFMJ11_0094 nitrogen regulation protein NtrB K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D VFMJ11_0093 ntrC; nitrogen regulation protein K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D VFMJ11_1484 C4-dicarboxylate transport sensor protein DctB K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D VFMJ11_1963 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D VFMJ11_1127 chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D VFMJ11_1965 chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D VFMJ11_1962 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D VFMJ11_2011 CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D VFMJ11_A0929 chemotaxis protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D VFMJ11_A0785 chemotaxis protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D VFMJ11_0728 autoinducer 2 sensor kinase/phosphatase LuxQ K10909 luxQ; two-component system, autoinducer 2 sensor kinase/phosphatase LuxQ [EC:2.7.13.3 3.1.3.-]
D VFMJ11_1118 autoinducer 1 sensor kinase/phosphatase LuxN K15850 luxN; two-component system, autoinducer 1 sensor kinase/phosphatase LuxN [EC:2.7.13.3 3.1.3.-]
D VFMJ11_0979 LuxU K10911 luxU; two-component system, phosphorelay protein LuxU
D VFMJ11_A1147 transcriptional regulator, LuxO family K10912 luxO; two-component system, repressor protein LuxO
D VFMJ11_0978 transcriptional regulatory protein ZraR K10912 luxO; two-component system, repressor protein LuxO
D VFMJ11_A0125 two component system histidine kinase K13040 ttrS; two-component system, LuxR family, sensor histidine kinase TtrS [EC:2.7.13.3]
D VFMJ11_A0126 transcriptional regulatory protein FixJ K13041 ttrR; two-component system, LuxR family, response regulator TtrR
D VFMJ11_1987 FlrB; two-component sensor kinase K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3]
D VFMJ11_1986 two-component response regulator K10943 flrC; two-component system, response regulator FlrC
D VFMJ11_2246 two-component sensor histidine kinase K19694 chiS; two-component system, sensor histidine kinase ChiS
C 02035 Bacterial motility proteins [BR:vfm02035]
D VFMJ11_1963 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D VFMJ11_1959 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D VFMJ11_1960 CheW domain protein K03408 cheW; purine-binding chemotaxis protein CheW
D VFMJ11_0292 chemotaxis protein CheX K03409 cheX; chemotaxis protein CheX
D VFMJ11_2010 cheR; CheR methyltransferase, SAM binding domain K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D VFMJ11_1962 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D VFMJ11_1127 chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D VFMJ11_1965 chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D VFMJ11_1964 chemotaxis protein CheZ K03414 cheZ; chemotaxis protein CheZ
D VFMJ11_2011 CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D VFMJ11_A0929 chemotaxis protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D VFMJ11_A0785 chemotaxis protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D VFMJ11_0813 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_1169 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_1450 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_1043 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_1207 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_1596 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_1732 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_1906 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_1916 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_2272 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_2347 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_A0073 toxin corregulated pilus biosynthesis protein I K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_A0131 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_A0363 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_A0205 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_A0206 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_A0428 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_A0497 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_A0498 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_A0765 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_A1192 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_B0155 histidine kinase K03406 mcp; methyl-accepting chemotaxis protein
D VFMJ11_A0115 aerotaxis receptor K03776 aer; aerotaxis receptor
D VFMJ11_1982 flagellar assembly protein K02411 fliH; flagellar assembly protein FliH
D VFMJ11_1981 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D VFMJ11_1980 fliJ; flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ
D VFMJ11_1975 flagellar protein FliO K02418 fliO; flagellar protein FliO/FliZ
D VFMJ11_1974 flagellar biosynthesis protein K02419 fliP; flagellar biosynthesis protein FliP
D VFMJ11_1973 fliQ; flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D VFMJ11_1972 fliR; flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D VFMJ11_1969 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D VFMJ11_1971 flhB; flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D VFMJ11_1983 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D VFMJ11_A0219 conserved hypothetical protein K02410 fliG; flagellar motor switch protein FliG
D VFMJ11_1977 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D VFMJ11_1976 flagellar motor switch phosphatase FliY K02417 fliN; flagellar motor switch protein FliN
D VFMJ11_1984 fliF; flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D VFMJ11_2002 flgI; flagellar P-ring protein FlgI K02394 flgI; flagellar P-ring protein FlgI
D VFMJ11_2012 flagellar basal body P-ring biosynthesis protein K02386 flgA; flagellar basal body P-ring formation protein FlgA
D VFMJ11_2003 flgH; flagellar L-ring protein FlgH K02393 flgH; flagellar L-ring protein FlgH
D VFMJ11_1978 fliL_1; flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL
D VFMJ11_2570 fliL_2; flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL
D VFMJ11_1985 fliE; flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D VFMJ11_1979 flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK
D VFMJ11_2009 flgB; flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D VFMJ11_2008 flgC; flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D VFMJ11_2007 flagellar basal body rod modification protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D VFMJ11_2005 flgF; flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D VFMJ11_2004 flgG; flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D VFMJ11_2001 flgJ; flagellar rod assembly protein/muramidase FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ
D VFMJ11_2006 flagellar hook protein K02390 flgE; flagellar hook protein FlgE
D VFMJ11_2000 flgK; flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D VFMJ11_1999 flgL; flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL
D VFMJ11_2014 FlgN K02399 flgN; flagellar biosynthesis protein FlgN
D VFMJ11_2017 conserved hypothetical protein K24343 flgT; flagellar H-ring protein FlgT
D VFMJ11_2016 lipoprotein, putative K24344 flgO; flagellar H-ring protein FlgO
D VFMJ11_2015 conserved hypothetical protein K09860 flgP; outer membrane protein FlgP
D VFMJ11_2430 sodium-type polar flagellar protein MotX K21217 motX; sodium-type polar flagellar protein MotX
D VFMJ11_0965 sodium-type flagellar protein MotY K21218 motY; sodium-type flagellar protein MotY
D VFMJ11_2184 flagellin K02406 fliC; flagellin
D VFMJ11_1993 A-type flagellin K02406 fliC; flagellin
D VFMJ11_1994 A-type flagellin K02406 fliC; flagellin
D VFMJ11_1995 flagellin subunit C K02406 fliC; flagellin
D VFMJ11_1996 flagellin K02406 fliC; flagellin
D VFMJ11_1998 A-type flagellin K02406 fliC; flagellin
D VFMJ11_1991 flagellar hook-associated protein K02407 fliD; flagellar hook-associated protein 2
D VFMJ11_1989 fliS; flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS
D VFMJ11_1966 RNA polymerase sigma factor for flagellar operon (Sigma-F factor)(Sigma-28) K02405 fliA; RNA polymerase sigma factor FliA
D VFMJ11_0734 chemotaxis protein PomA K02556 motA; chemotaxis protein MotA
D VFMJ11_A0220 chemotaxis MotA protein K02556 motA; chemotaxis protein MotA
D VFMJ11_0735 flagellar motor protein K02557 motB; chemotaxis protein MotB
D VFMJ11_A0221 chemotaxis MotB protein K02557 motB; chemotaxis protein MotB
D VFMJ11_1988 FlrA; sigma-54-dependent transcriptional activator K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D VFMJ11_1987 FlrB; two-component sensor kinase K10942 flrB; two-component system, sensor histidine kinase FlrB [EC:2.7.13.3]
D VFMJ11_1986 two-component response regulator K10943 flrC; two-component system, response regulator FlrC
D VFMJ11_2013 negative regulator of flagellin synthesis FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
D VFMJ11_1992 flagellar protein FlaG K06603 flaG; flagellar protein FlaG
D VFMJ11_1990 FlaI K06604 flaI; flagellar protein FlaI
D VFMJ11_1968 flhF; flagellar biosynthetic protein FlhF K02404 flhF; flagellar biosynthesis protein FlhF
D VFMJ11_1967 flagellar biosynthesis protein FlhG K04562 flhG; flagellar biosynthesis protein FlhG
D VFMJ11_0431 twitching mobility protein K02669 pilT; twitching motility protein PilT
D VFMJ11_0432 pili retraction protein PilU K02670 pilU; twitching motility protein PilU
D VFMJ11_2298 fimbrial protein (Pilin) (Strain P1) K02650 pilA; type IV pilus assembly protein PilA
D VFMJ11_2299 pilB; type IV-A pilus assembly ATPase PilB K02652 pilB; type IV pilus assembly protein PilB
D VFMJ11_2300 type IV pilus assembly protein TapC K02653 pilC; type IV pilus assembly protein PilC
D VFMJ11_2301 bacterial Peptidase A24 N-terminal domain family protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D VFMJ11_0641 pilF; type IV pilus biogenesis/stability protein PilW K02656 pilF; type IV pilus assembly protein PilF
D VFMJ11_2405 fimbrial assembly protein PilQ K02666 pilQ; type IV pilus assembly protein PilQ
D VFMJ11_2406 pilus expression protein K02665 pilP; type IV pilus assembly protein PilP
D VFMJ11_2407 pili assembly protein PilO K02664 pilO; type IV pilus assembly protein PilO
D VFMJ11_2408 pili assembly protein PilN K02663 pilN; type IV pilus assembly protein PilN
D VFMJ11_2409 pili assembly protein PilM K02662 pilM; type IV pilus assembly protein PilM
D VFMJ11_0586 Tfp pilus assembly protein PilV K02671 pilV; type IV pilus assembly protein PilV
D VFMJ11_0584 prepilin-type N-cleavage/methylation domain protein K02672 pilW; type IV pilus assembly protein PilW
D VFMJ11_0582 fimbrial protein pilin K02655 pilE; type IV pilus assembly protein PilE
D VFMJ11_0512 conserved domain protein K02651 flp; pilus assembly protein Flp/PilA
D VFMJ11_A0252 conserved domain protein K02651 flp; pilus assembly protein Flp/PilA
D VFMJ11_0513 conserved hypothetical protein K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D VFMJ11_A0253 conserved hypothetical protein K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D VFMJ11_0514 cpaB_1; Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB
D VFMJ11_A0254 cpaB_2; Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB
D VFMJ11_0515 general secretion pathway protein D K02280 cpaC; pilus assembly protein CpaC
D VFMJ11_A0255 general secretion pathway protein D K02280 cpaC; pilus assembly protein CpaC
D VFMJ11_A0257 ATPase involved in chromosome partitioning K02282 cpaE; pilus assembly protein CpaE
D VFMJ11_0517 ATPase involved in chromosome partitioning K02282 cpaE; pilus assembly protein CpaE
D VFMJ11_0518 TadA K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D VFMJ11_A0258 TadA K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D VFMJ11_A0963 P pilus assembly protein, chaperone PapD K07346 fimC; fimbrial chaperone protein
D VFMJ11_A0962 P pilus assembly protein, porin PapC K07347 fimD; outer membrane usher protein
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:vfm04812]
D VFMJ11_0363 Rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D VFMJ11_2309 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D VFMJ11_2310 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D VFMJ11_1830 minC; septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D VFMJ11_1831 minD; septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D VFMJ11_1832 minE; cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor
D VFMJ11_2708 sporulation initiation inhibitor protein soj K03496 parA; chromosome partitioning protein
D VFMJ11_1961 chromosome partitioning protein ParA K03496 parA; chromosome partitioning protein
D VFMJ11_B0036 ParA family protein K03496 parA; chromosome partitioning protein
D VFMJ11_0111 chromosome partitioning protein ParA K03496 parA; chromosome partitioning protein
D VFMJ11_A1266 plasmid partition protein A K03496 parA; chromosome partitioning protein
D VFMJ11_B0010 partitioning protein A K03496 parA; chromosome partitioning protein
D VFMJ11_2707 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D VFMJ11_B0011 DNA-binding protein ParB, putative K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D VFMJ11_A1265 DNA-binding protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:vfm04147]
D VFMJ11_0829 chaperone protein HtpG (Heat shock protein htpG) (High temperatureprotein G) K04079 HSP90A; molecular chaperone HtpG
D VFMJ11_2181 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D VFMJ11_0951 gap_1; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D VFMJ11_0442 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D VFMJ11_2370 pyk_1; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D VFMJ11_A0541 pyk_2; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D VFMJ11_0741 peptidyl-prolyl cis-trans isomerase K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D VFMJ11_2109 peroxiredoxin-2 K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24]
D VFMJ11_0196 groL; chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D VFMJ11_2131 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D VFMJ11_0291 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D VFMJ11_0651 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D VFMJ11_0223 tuf_2; translation elongation factor Tu K02358 tuf; elongation factor Tu
D VFMJ11_2537 tuf_1; translation elongation factor Tu K02358 tuf; elongation factor Tu
D VFMJ11_1208 histidine triad nucleotide-binding protein 2 K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D VFMJ11_1834 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D VFMJ11_2368 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D VFMJ11_2376 putative long-chain-fatty-acid--CoA ligase family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D VFMJ11_0535 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D VFMJ11_0460 sodium-dependent phosphate transporter K14683 SLC34A; solute carrier family 34 (sodium-dependent phosphate cotransporter)
D VFMJ11_0830 adenylate kinase (ATP-AMP transphosphorylase) K00939 adk; adenylate kinase [EC:2.7.4.3]
D VFMJ11_1812 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D VFMJ11_2416 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D VFMJ11_0252 fbp; fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D VFMJ11_A0392 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D VFMJ11_A0935 glgB; 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D VFMJ11_A0271 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D VFMJ11_0096 glnA; glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D VFMJ11_0052 hemB; delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D VFMJ11_2211 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D VFMJ11_2512 purH; bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D VFMJ11_2413 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D VFMJ11_2292 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D VFMJ11_A0518 zwf; glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D VFMJ11_0197 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D VFMJ11_A0973 outer membrane lipoprotein blc K03098 APOD; apolipoprotein D and lipocalin family protein
C 02048 Prokaryotic defense system [BR:vfm02048]
D VFMJ11_1056 conserved hypothetical protein K19128 csy2; CRISPR-associated protein Csy2
D VFMJ11_1055 csy_2; crispr-associated protein, Csy3 family K19129 csy3; CRISPR-associated protein Csy3
D VFMJ11_1054 csy_1; crispr-associated protein, Csy4 family K19130 csy4; CRISPR-associated endonuclease Csy4 [EC:3.1.-.-]
D VFMJ11_2141 type I restriction-modification system, R subunit K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D VFMJ11_B0055 type I site-specific deoxyribonuclease K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D VFMJ11_B0054 restriction modification system S subunit K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D VFMJ11_2142 restriction modification system DNA specificity domain protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D VFMJ11_2143 type I restriction-modification system, M subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D VFMJ11_B0053 type I restriction-modification system, M subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D VFMJ11_2401 retron EC67 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D VFMJ11_A0755 restriction endonuclease family K07448 mrr; restriction system protein
D VFMJ11_A0688 toxin RelE K06218 relE; mRNA interferase RelE/StbE
D VFMJ11_A0687 stability protein StbD, putative K18923 stbD; antitoxin StbD
D VFMJ11_1565 protein HipA K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D VFMJ11_2144 HipA domain protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D VFMJ11_1564 HTH-type transcriptional regulator HipB K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D VFMJ11_2145 putative transcriptional regulator, XRE family K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D VFMJ11_A0351 pspC; phage shock protein C K03973 pspC; phage shock protein C
D VFMJ11_A0350 pspB; phage shock protein B K03970 pspB; phage shock protein B
D VFMJ11_A0651 CcdB K19163 ccdB; toxin CcdB
D VFMJ11_A0650 CcdB antidote CcdA K19164 ccdA; antitoxin CcdA
D VFMJ11_A0880 toxin of toxin-antitoxin stability system K19092 parE1_3_4; toxin ParE1/3/4
D VFMJ11_A0657 plasmid maintenance system killer protein K07334 higB-1; toxin HigB-1
D VFMJ11_A0656 higA; addiction module antidote protein, HigA family K21498 higA-1; antitoxin HigA-1
D VFMJ11_A1008 conserved hypothetical protein K19334 tabA; biofilm protein TabA
D VFMJ11_2309 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D VFMJ11_0363 Rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D VFMJ11_2338 parC; DNA topoisomerase IV, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D VFMJ11_2339 parE; DNA topoisomerase IV, B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D VFMJ11_2020 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D VFMJ11_2201 protein VV1_1557 K09159 cptB; antitoxin CptB
D VFMJ11_0631 iscS; cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D VFMJ11_B0020 putative DGQHR domain protein K19169 dndB; DNA sulfur modification protein DndB
D VFMJ11_A0171 dndB; DNA sulfur modification protein DndB K19169 dndB; DNA sulfur modification protein DndB
D VFMJ11_A0170 dndC; putative sulfurtransferase DndC K19170 dndC; DNA sulfur modification protein DndC
D VFMJ11_A0169 dndD; DNA sulfur modification protein DndD K19171 dndD; DNA sulfur modification protein DndD
D VFMJ11_A0168 dndE; DNA sulfur modification protein DndE K19172 dndE; DNA sulfur modification protein DndE
D VFMJ11_A0163 dnd system-associated protein 3 K19173 dptF; DNA phosphorothioation-dependent restriction protein DptF
D VFMJ11_A0164 dnd system-associated protein 1 K19174 dptG; DNA phosphorothioation-dependent restriction protein DptG
D VFMJ11_A0165 dnd system-associated protein 2 K19175 dptH; DNA phosphorothioation-dependent restriction protein DptH
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels [BR:vfm04040]
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules [BR:vfm04090]
C 01504 Antimicrobial resistance genes [BR:vfm01504]
D VFMJ11_1750 Na+/H+ antiporter family protein K18218 tet35; tetracycline resistance efflux pump
D VFMJ11_A0054 chloramphenicol acetyltransferase K00638 catB; chloramphenicol O-acetyltransferase type B [EC:2.3.1.28]
D VFMJ11_A0917 chloramphenicol acetyltransferase K00638 catB; chloramphenicol O-acetyltransferase type B [EC:2.3.1.28]
D VFMJ11_1400 pentapeptide repeat protein K18555 qnr; fluoroquinolone resistance protein
D VFMJ11_1177 beta-lactamase K17836 penP; beta-lactamase class A [EC:3.5.2.6]
D VFMJ11_A0212 sensor protein IrlS K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D VFMJ11_A0213 transcriptional activator protein IrlR K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
D VFMJ11_0527 sensor protein PhoQ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D VFMJ11_0526 sensor protein PhoQ K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D VFMJ11_0528 transcriptional regulatory protein PhoP K07660 phoP; two-component system, OmpR family, response regulator PhoP
D VFMJ11_A1247 acriflavine resistance protein E (Protein EnvC) K03585 acrA; membrane fusion protein, multidrug efflux system
D VFMJ11_2654 periplasmic component of efflux system K03585 acrA; membrane fusion protein, multidrug efflux system
D VFMJ11_1685 periplasmic component of efflux system K03585 acrA; membrane fusion protein, multidrug efflux system
D VFMJ11_2655 acriflavin resistance protein K18138 acrB; multidrug efflux pump
D VFMJ11_A1024 OqxB K18138 acrB; multidrug efflux pump
D VFMJ11_A1246 OqxB K18138 acrB; multidrug efflux pump
D VFMJ11_A0395 acriflavin resistance periplasmic protein K18302 mexJ; membrane fusion protein, multidrug efflux system
D VFMJ11_0819 cueR; Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D VFMJ11_2344 TolC protein K12340 tolC; outer membrane protein
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:vfm00537]
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:vfm03100]
D VFMJ11_2551 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D VFMJ11_0323 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D VFMJ11_2270 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D VFMJ11_2555 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D VFMJ11_2650 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D VFMJ11_1897 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D VFMJ11_0543 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D VFMJ11_0544 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D VFMJ11_0548 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D VFMJ11_0549 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D VFMJ11_0545 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D VFMJ11_0546 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D VFMJ11_0975 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D VFMJ11_0413 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D VFMJ11_0415 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D VFMJ11_0410 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D VFMJ11_A1130 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D VFMJ11_0976 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D VFMJ11_2273 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D VFMJ11_1772 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D VFMJ11_1774 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D VFMJ11_A0311 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D VFMJ11_0580 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D VFMJ11_2268 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D VFMJ11_0325 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D VFMJ11_2233 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D VFMJ11_2548 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D VFMJ11_1666 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D VFMJ11_1669 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D VFMJ11_1744 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D VFMJ11_0780 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D VFMJ11_0793 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D VFMJ11_0788 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D VFMJ11_0791 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D VFMJ11_0795 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D VFMJ11_0784 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D VFMJ11_0321 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D VFMJ11_2235 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D VFMJ11_2553 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D VFMJ11_2663 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D VFMJ11_A0465 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D VFMJ11_2539 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D VFMJ11_A0455 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D VFMJ11_A0839 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D VFMJ11_1665 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D VFMJ11_1741 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D VFMJ11_2448 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D VFMJ11_2446 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D VFMJ11_2442 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D VFMJ11_1739 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D VFMJ11_1743 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D VFMJ11_2450 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D VFMJ11_2444 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D VFMJ11_1668 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D VFMJ11_2647 tRNA-His K14226 tRNA-His; tRNA His
D VFMJ11_2649 tRNA-His K14226 tRNA-His; tRNA His
D VFMJ11_0322 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D VFMJ11_2271 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D VFMJ11_0483 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D VFMJ11_1664 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D VFMJ11_1667 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D VFMJ11_1740 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D VFMJ11_1742 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D VFMJ11_0407 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D VFMJ11_0796 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D VFMJ11_0787 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D VFMJ11_0783 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D VFMJ11_0792 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D VFMJ11_0781 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D VFMJ11_0785 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D VFMJ11_0790 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D VFMJ11_0794 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D VFMJ11_2552 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D VFMJ11_A0466 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D VFMJ11_2662 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D VFMJ11_0782 tRNA-Met K14230 tRNA-Met; tRNA Met
D VFMJ11_0789 tRNA-Met K14230 tRNA-Met; tRNA Met
D VFMJ11_0797 tRNA-Met K14230 tRNA-Met; tRNA Met
D VFMJ11_0786 tRNA-Met K14230 tRNA-Met; tRNA Met
D VFMJ11_2365 tRNA-Met K14230 tRNA-Met; tRNA Met
D VFMJ11_2443 tRNA-Met K14230 tRNA-Met; tRNA Met
D VFMJ11_2445 tRNA-Met K14230 tRNA-Met; tRNA Met
D VFMJ11_2447 tRNA-Met K14230 tRNA-Met; tRNA Met
D VFMJ11_2449 tRNA-Met K14230 tRNA-Met; tRNA Met
D VFMJ11_0484 tRNA-Met K14230 tRNA-Met; tRNA Met
D VFMJ11_0418 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D VFMJ11_2275 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D VFMJ11_0411 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D VFMJ11_0416 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D VFMJ11_0816 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D VFMJ11_2648 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D VFMJ11_2646 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D VFMJ11_0542 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D VFMJ11_0547 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D VFMJ11_1771 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D VFMJ11_A1132 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D VFMJ11_1773 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D VFMJ11_A0312 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D VFMJ11_1777 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D VFMJ11_1776 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D VFMJ11_1022 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D VFMJ11_2538 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D VFMJ11_0412 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D VFMJ11_0417 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D VFMJ11_2274 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D VFMJ11_A1131 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D VFMJ11_2541 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D VFMJ11_0414 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D VFMJ11_2659 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D VFMJ11_0028 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D VFMJ11_A0468 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D VFMJ11_0581 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D VFMJ11_1686 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D VFMJ11_1689 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D VFMJ11_1690 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D VFMJ11_1687 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D VFMJ11_1688 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D VFMJ11_1691 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D VFMJ11_2540 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D VFMJ11_2550 tRNA-Val K14237 tRNA-Val; tRNA Val
D VFMJ11_2661 tRNA-Val K14237 tRNA-Val; tRNA Val
D VFMJ11_A0467 tRNA-Val K14237 tRNA-Val; tRNA Val
D VFMJ11_1329 tRNA-Val K14237 tRNA-Val; tRNA Val
D VFMJ11_1330 tRNA-Val K14237 tRNA-Val; tRNA Val
D VFMJ11_A1267 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D VFMJ11_A1268 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D VFMJ11_2711 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D VFMJ11_2719 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D VFMJ11_A1269 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D VFMJ11_2716 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D VFMJ11_2714 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D VFMJ11_2715 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D VFMJ11_2713 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D VFMJ11_2712 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D VFMJ11_2718 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D VFMJ11_2717 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D VFMJ11_1805 coniferyl aldehyde dehydrogenase K00154 E1.2.1.68; coniferyl-aldehyde dehydrogenase [EC:1.2.1.68]
D VFMJ11_2481 gap_2; glyceraldehyde-3-phosphate dehydrogenase, type I K25224 gapdh; glyceraldehyde-3-phosphate dehydrogenase (arsenate-transferring) [EC:1.2.1.107]
D VFMJ11_1762 2,4-dienoyl-coa reductase (nadph) K00219 fadH; 2,4-dienoyl-CoA reductase (NADPH2) [EC:1.3.1.34]
D VFMJ11_0318 msrA; peptide-methionine (S)-S-oxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D VFMJ11_A0019 peptide methionine sulfoxide reductase MsrA/msrB K12267 msrAB; peptide methionine sulfoxide reductase msrA/msrB [EC:1.8.4.11 1.8.4.12]
D VFMJ11_0952 msrB; methionine-R-sulfoxide reductase K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D VFMJ11_A0981 glutathione S-transferase K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-]
D VFMJ11_1160 glutathione S-transferase K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-]
D VFMJ11_1159 glutathione S-transferase K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-]
D VFMJ11_0592 alternative oxidase 2 K17893 AOX1; ubiquinol oxidase [EC:1.10.3.11]
D VFMJ11_2157 CytC K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5]
D VFMJ11_2054 bacterioferritin comigratory protein K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D VFMJ11_A0373 osmotically inducible protein C K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28]
D VFMJ11_2032 melanin biosynthesis protein TyrA K07223 yfeX; porphyrinogen peroxidase [EC:1.11.1.-]
D VFMJ11_1141 pirin family protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D VFMJ11_2429 globin domain protein K05916 hmp; nitric oxide dioxygenase [EC:1.14.12.17]
D VFMJ11_0082 ferritin K02217 ftnA; ferritin [EC:1.16.3.2]
D VFMJ11_1908 ferredoxin--NADP reductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D VFMJ11_1909 nitric oxide reductase FlRd-NAD(+) reductase K12265 norW; nitric oxide reductase FlRd-NAD(+) reductase [EC:1.18.1.-]
D VFMJ11_2058 arsC; arsenate reductase K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1]
D VFMJ11_A0318 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4]
D VFMJ11_1701 pflA; pyruvate formate-lyase 1-activating enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D VFMJ11_A1078 pyruvate formate-lyase activating enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D VFMJ11_A0999 iron-sulfur cluster-binding protein K11933 hcr; NADH oxidoreductase Hcr [EC:1.-.-.-]
D VFMJ11_2175 pcm; protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D VFMJ11_A0885 cyclopropane-fatty-acyl-phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D VFMJ11_1306 coproporphyrinogen III oxidase K21936 chuW; anaerobilin synthase [EC:2.1.1.342]
D VFMJ11_1412 maltose O-acetyltransferase K00661 maa; maltose O-acetyltransferase [EC:2.3.1.79]
D VFMJ11_A1033 acetyltransferase K00661 maa; maltose O-acetyltransferase [EC:2.3.1.79]
D VFMJ11_0774 lnt; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D VFMJ11_1196 acetyltransferase K03824 yhbS; putative acetyltransferase [EC:2.3.1.-]
D VFMJ11_0497 acetyltransferase, gnat family K03824 yhbS; putative acetyltransferase [EC:2.3.1.-]
D VFMJ11_A1172 acetyltransferase K03827 yjaB; putative acetyltransferase [EC:2.3.1.-]
D VFMJ11_1780 IAA acetyltransferase K03828 yjgM; putative acetyltransferase [EC:2.3.1.-]
D VFMJ11_1420 acetyltransferase K03830 yafP; putative acetyltransferase [EC:2.3.1.-]
D VFMJ11_1889 aat; leucyl/phenylalanyl-tRNA--protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6]
D VFMJ11_1890 leucyl/phenylalanyl-tRNA--protein transferase K21420 bpt; leucyl-tRNA---protein transferase [EC:2.3.2.29]
D VFMJ11_1499 DTW domain containing protein K05812 DTWD2; tRNA-uridine aminocarboxypropyltransferase [EC:2.5.1.25]
D VFMJ11_0086 hypothetical cytosolic protein K05812 DTWD2; tRNA-uridine aminocarboxypropyltransferase [EC:2.5.1.25]
D VFMJ11_1807 hypothetical cytosolic protein K05812 DTWD2; tRNA-uridine aminocarboxypropyltransferase [EC:2.5.1.25]
D VFMJ11_0458 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D VFMJ11_0620 glucokinase K18673 bglK; beta-glucoside kinase [EC:2.7.1.85]
D VFMJ11_0751 thiamine biosynthesis lipoprotein ApbE K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D VFMJ11_2346 glnE; glutamate-ammonia-ligase adenylyltransferase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]
D VFMJ11_1896 protein VV1_0039 K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108]
D VFMJ11_0891 esterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D VFMJ11_0997 ybgC; tol-pal system-associated acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D VFMJ11_1116 PHP domain containing protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D VFMJ11_1941 sixA; phosphohistidine phosphatase SixA K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D VFMJ11_A0058 alkyl sulfatase K25227 sdsA1; linear primary-alkylsulfatase [EC:3.1.6.21]
D VFMJ11_A1111 sulfatase, putative K01138 K01138; uncharacterized sulfatase [EC:3.1.6.-]
D VFMJ11_0437 endonuclease-1 K01150 endA; deoxyribonuclease I [EC:3.1.21.1]
D VFMJ11_0051 hydrolase, TatD family K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D VFMJ11_0503 hydrolase, TatD family K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D VFMJ11_1860 hydrolase, TatD family K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D VFMJ11_0852 esterase YbfF K01175 ybfF; esterase [EC:3.1.-.-]
D VFMJ11_0758 esterase FrsA K11750 frsA; esterase FrsA [EC:3.1.-.-]
D VFMJ11_A1001 endoglucanase K20542 bcsZ; endoglucanase [EC:3.2.1.4]
D VFMJ11_1041 chitodextrinase K21606 endo_I; endo-chitodextinase [EC:3.2.1.202]
D VFMJ11_A0375 lipoprotein, putative K03931 ygjK; glucosidase [EC:3.2.1.-]
D VFMJ11_2674 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D VFMJ11_0369 putative Nitrilase 1 family protein K11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128]
D VFMJ11_1289 protein VV2_0047 K09900 E3.5.1.135; N4-acetylcytidine amidohydrolase [EC:3.5.1.135]
D VFMJ11_0394 endoribonuclease L-PSP, putative K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D VFMJ11_0656 endoribonuclease L-PSP, putative K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D VFMJ11_1562 endoribonuclease L-PSP, putative K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D VFMJ11_2349 putative adenylate cyclase family K18446 ygiF; triphosphatase [EC:3.6.1.25]
D VFMJ11_1873 maf_2; septum formation protein Maf K25422 yceF; 7-methyl-GTP pyrophosphatase [EC:3.6.1.-]
D VFMJ11_1517 MoxR protein K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D VFMJ11_A1017 moxR; ATPase, MoxR family K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D VFMJ11_A0766 MoxR protein K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D VFMJ11_A0545 ATPase RavA K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D VFMJ11_A1113 hyaluronate lyase K01727 hysA; hyaluronate lyase [EC:4.2.2.1]
D VFMJ11_0604 csdA; cysteine desulfurase, catalytic subunit CsdA K01766 csdA; cysteine sulfinate desulfinase [EC:4.4.1.-]
D VFMJ11_A0506 fkbp-type peptidyl-prolyl cis-trans isomerase fkpa K01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8]
D VFMJ11_0253 mpl; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45]
D VFMJ11_1546 DNA ligase K26441 lig; DNA ligase [EC:6.5.1.1]
D VFMJ11_0971 electron transport complex protein RnfD K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2]
D VFMJ11_0972 electron transport complex protein RnfC K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2]
D VFMJ11_0973 electron transport complex protein RnfB K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2]
D VFMJ11_0745 nqrA; NADH:ubiquinone oxidoreductase, A subunit K00346 nqrA; Na+-transporting NADH:ubiquinone oxidoreductase subunit A [EC:7.2.1.1]
D VFMJ11_0746 nqrB; NADH:ubiquinone oxidoreductase, B subunit K00347 nqrB; Na+-transporting NADH:ubiquinone oxidoreductase subunit B [EC:7.2.1.1]
D VFMJ11_0747 nqrC; NADH:ubiquinone oxidoreductase, C subunit K00348 nqrC; Na+-transporting NADH:ubiquinone oxidoreductase subunit C [EC:7.2.1.1]
D VFMJ11_0748 nqrD; NADH:ubiquinone oxidoreductase, D subunit K00349 nqrD; Na+-transporting NADH:ubiquinone oxidoreductase subunit D [EC:7.2.1.1]
D VFMJ11_0749 nqrE; NADH:ubiquinone oxidoreductase, E subunit K00350 nqrE; Na+-transporting NADH:ubiquinone oxidoreductase subunit E [EC:7.2.1.1]
D VFMJ11_0750 nqrF; NADH:ubiquinone oxidoreductase, F subunit K00351 nqrF; Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:7.2.1.1]
D VFMJ11_1382 copper-translocating P-type ATPase K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9]
D VFMJ11_1616 cadA; cadmium-translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]
C 99981 Carbohydrate metabolism
D VFMJ11_2278 sfsA; sugar fermentation stimulation protein K06206 sfsA; sugar fermentation stimulation protein A
D VFMJ11_1734 torT; tmao reductase system periplasmic protein tort K11930 torT; periplasmic protein TorT
D VFMJ11_2105 acetoin utilization AcuB protein K04767 acuB; acetoin utilization protein AcuB
C 99982 Energy metabolism
D VFMJ11_1447 FdhD protein K02379 fdhD; FdhD protein
D VFMJ11_0636 fdx; ferredoxin, 2Fe-2S type, ISC system K04755 fdx; ferredoxin, 2Fe-2S
D VFMJ11_1277 ferredoxin K11107 yfaE; ferredoxin
D VFMJ11_0970 electron transport complex protein RnfG K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G
D VFMJ11_0969 electron transport complex protein RnfE K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E
D VFMJ11_0974 na+-translocating NADH-quinone reductase subunit e K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A
D VFMJ11_0001 protein MioC K06205 mioC; MioC protein
D VFMJ11_0447 flavodoxin K03840 fldB; flavodoxin II
D VFMJ11_0632 iscU; FeS cluster assembly scaffold IscU K04488 iscU; nitrogen fixation protein NifU and related proteins
D VFMJ11_1910 anaerobic nitric oxide reductase flavorubredoxin K12264 norV; anaerobic nitric oxide reductase flavorubredoxin
D VFMJ11_2040 napD; NapD protein K02570 napD; periplasmic nitrate reductase NapD
D VFMJ11_2041 napF; ferredoxin-type protein NapF K02572 napF; ferredoxin-type protein NapF
D VFMJ11_A0334 torE; trimethylamine N-oxide reductase system, TorE protein K02571 napE; periplasmic nitrate reductase NapE
D VFMJ11_1643 cytochrome c-type biogenesis protein CcmH K04017 nrfF; formate-dependent nitrite reductase complex subunit NrfF
D VFMJ11_1650 cytochrome c-type biogenesis protein CcmI K04018 nrfG; formate-dependent nitrite reductase complex subunit NrfG
D VFMJ11_0850 flavodoxin K03839 fldA; flavodoxin I
D VFMJ11_2037 cytoChrome c-type protein TorC K02569 napC; cytochrome c-type protein NapC
D VFMJ11_1648 nrfB; cytochrome c nitrite reductase, pentaheme subunit K04013 nrfB; cytochrome c-type protein NrfB
D VFMJ11_1647 nrfC; cytochrome c nitrite reductase, Fe-S protein K04014 nrfC; protein NrfC
D VFMJ11_1646 nrfD; cytochrome c nitrite reductase, NrfD subunit K04015 nrfD; protein NrfD
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D VFMJ11_2027 protein CysZ K06203 cysZ; CysZ protein
D VFMJ11_0430 pyridoxal phosphate enzyme, YggS family K06997 yggS; PLP dependent protein
D VFMJ11_A0648 acetyltransferase, gnat family K22479 argA; N-acetyltransferase
C 99986 Glycan metabolism
D VFMJ11_1884 conserved hypothetical protein K08992 lapA; lipopolysaccharide assembly protein A
D VFMJ11_1883 tetratricopeptide repeat family protein K19804 lapB; lipopolysaccharide assembly protein B
D VFMJ11_0143 glycosyl transferase, family 25 K07270 K07270; glycosyl transferase, family 25
D VFMJ11_A1002 cellulose synthase regulatory subunit K20541 bcsB; cellulose synthase operon protein B
C 99987 Cofactor metabolism
D VFMJ11_A0090 conserved hypothetical protein K02173 yggC; putative kinase
D VFMJ11_0061 HemY protein K02498 hemY; HemY protein
D VFMJ11_0047 ubiB; 2-polyprenylphenol 6-hydroxylase K03688 ubiB; ubiquinone biosynthesis protein
D VFMJ11_0046 SCP-2 sterol transfer family protein K03690 ubiJ; ubiquinone biosynthesis accessory factor UbiJ
D VFMJ11_2656 ATP synthase subunit eta K09806 ubiK; ubiquinone biosynthesis accessory factor UbiK
D VFMJ11_0496 sterol binding protein K24843 ubiT; O2-independent ubiquinone biosynthesis accessory factor UbiT
D VFMJ11_1501 putative efflux pump component MtrF K12942 abgT; aminobenzoyl-glutamate transport protein
D VFMJ11_0653 aminobenzoyl-glutamate transport protein K12942 abgT; aminobenzoyl-glutamate transport protein
C 99988 Secondary metabolism
D VFMJ11_A1220 NADPH-dependent fmn reductase K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone)
C 99999 Others
D VFMJ11_1140 transporter K15977 K15977; putative oxidoreductase
D VFMJ11_A0374 hypothetical membrane spanning protein K15977 K15977; putative oxidoreductase
D VFMJ11_A0582 acetyltransferase family protein K09181 yfiQ; acetyltransferase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D VFMJ11_A0603 conserved domain protein K03704 cspA; cold shock protein
D VFMJ11_1894 cspD; cold shock domain protein CspD K03704 cspA; cold shock protein
D VFMJ11_A1204 conserved domain protein K03704 cspA; cold shock protein
D VFMJ11_2696 cold-shock' DNA-binding domain, putative K03704 cspA; cold shock protein
D VFMJ11_2522 transcriptional regulator K07740 rsd; regulator of sigma D
D VFMJ11_2261 nitrogen regulatory protein P-II K04752 glnK; nitrogen regulatory protein P-II 2
D VFMJ11_0118 protein YhgF K06959 tex; protein Tex
C 99974 Translation
D VFMJ11_0146 cleavage and polyadenylation K07576 K07576; metallo-beta-lactamase family protein
C 99975 Protein processing
D VFMJ11_0899 heat shock protein HslJ K03668 hslJ; heat shock protein HslJ
D VFMJ11_1893 clpS; ATP-dependent Clp protease adaptor protein ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D VFMJ11_0832 tig; trigger factor K03545 tig; trigger factor
D VFMJ11_0690 urease accessory protein UreE K03187 ureE; urease accessory protein
D VFMJ11_0689 urease accessory protein UreF K03188 ureF; urease accessory protein
D VFMJ11_0688 ureG; urease accessory protein UreG K03189 ureG; urease accessory protein
D VFMJ11_0694 ureD; urease accessory protein UreD K03190 ureD; urease accessory protein
D VFMJ11_2139 smpB; SsrA-binding protein K03664 smpB; SsrA-binding protein
D VFMJ11_2690 putative Mg chelatase family protein K07391 comM; magnesium chelatase family protein
D VFMJ11_2391 OsmC/Ohr family protein K07397 yhfA; putative redox protein
D VFMJ11_2584 yhgI; IscR-regulated protein YhgI K07400 nfuA; Fe/S biogenesis protein NfuA
C 99976 Replication and repair
D VFMJ11_1678 O6-methylguanine-DNA methyltransferase K07443 ybaZ; methylated-DNA-protein-cysteine methyltransferase related protein
D VFMJ11_0608 conserved hypothetical protein K01146 xni; protein Xni
D VFMJ11_0123 radC; DNA repair protein RadC K03630 radC; DNA repair protein RadC
D VFMJ11_0044 DNA recombination protein K09760 rmuC; DNA recombination protein RmuC
D VFMJ11_A0434 putative RecF family protein K07459 ybjD; putative ATP-dependent endonuclease of the OLD family
D VFMJ11_1066 RecF/RecN/SMC N domain protein K07459 ybjD; putative ATP-dependent endonuclease of the OLD family
D VFMJ11_2324 conserved hypothetical protein K07460 yraN; putative endonuclease
D VFMJ11_A0611 endo/excinuclease domain protein K07461 K07461; putative endonuclease
D VFMJ11_2672 protein smf (DNA-processing chain A) K04096 smf; DNA processing protein
D VFMJ11_0945 ATPase, AAA family K07478 ycaJ; putative ATPase
D VFMJ11_2670 DNA topoisomerase I K07479 yrdD; putative DNA topoisomerase
D VFMJ11_1069 integrase, catalytic region K07497 K07497; putative transposase
C 99979 Viral proteins
C 99998 Others
D VFMJ11_A0349 pspA; phage shock protein A K03969 pspA; phage shock protein A
D VFMJ11_A0152 phage shock protein E K03972 pspE; phage shock protein E
D VFMJ11_1810 conserved hypothetical protein K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D VFMJ11_1684 acriflavin resistance protein K03296 TC.HAE1; hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
D VFMJ11_2641 glycine betaine transporter OpuD K03451 TC.BCT; betaine/carnitine transporter, BCCT family
D VFMJ11_1197 bcct family transporter K03451 TC.BCT; betaine/carnitine transporter, BCCT family
D VFMJ11_A0415 glycine betaine transporter OpuD K03451 TC.BCT; betaine/carnitine transporter, BCCT family
D VFMJ11_1199 tripeptide permease TppB K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D VFMJ11_0840 di-/tripeptide transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D VFMJ11_A0150 inner membrane transporter YbgH K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D VFMJ11_A0151 amino acid/peptide transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D VFMJ11_2351 low-affinity inorganic phosphate transporter K03306 TC.PIT; inorganic phosphate transporter, PiT family
D VFMJ11_A0389 sodium/glucose cotransporter K03307 TC.SSS; solute:Na+ symporter, SSS family
D VFMJ11_0686 sodium-glucose/galactose cotransporter K03307 TC.SSS; solute:Na+ symporter, SSS family
D VFMJ11_1857 sodium/proline symporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D VFMJ11_0678 transporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D VFMJ11_1715 Na+-dependent transporter, SNF family K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D VFMJ11_2215 amino-acid carrier protein AlsT K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D VFMJ11_2164 amino-acid carrier protein AlsT K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D VFMJ11_1550 sodium/alanine symporter K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D VFMJ11_A0400 sodium/proton-dependent alanine carrier protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D VFMJ11_0446 brnQ_1; branched-chain amino acid transport system II carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family
D VFMJ11_1161 brnQ_2; branched-chain amino acid transport system II carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family
D VFMJ11_A0403 brnQ_3; branched-chain amino acid transport system II carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family
D VFMJ11_0504 nucleoside permease NupC K03317 TC.CNT; concentrative nucleoside transporter, CNT family
D VFMJ11_1174 nucleoside permease NupC K03317 TC.CNT; concentrative nucleoside transporter, CNT family
D VFMJ11_1398 Na+ dependent nucleoside transporter family protein K03317 TC.CNT; concentrative nucleoside transporter, CNT family
D VFMJ11_2171 nucleoside permease NupC K03317 TC.CNT; concentrative nucleoside transporter, CNT family
D VFMJ11_A1089 nucleoside permease NupC K03317 TC.CNT; concentrative nucleoside transporter, CNT family
D VFMJ11_1138 TrkA domain integral membrane protein K07085 K07085; putative transport protein
D VFMJ11_0927 putative transport protein K07085 K07085; putative transport protein
C 99978 Cell growth
D VFMJ11_1108 ispZ; intracellular septation protein A K06190 ispZ; intracellular septation protein
D VFMJ11_1291 sporulation-control protein K06377 spo0M; sporulation-control protein
D VFMJ11_2680 sporulation-control protein K06377 spo0M; sporulation-control protein
D VFMJ11_2472 cell wall endopeptidase, family M23/M37 K22719 envC; murein hydrolase activator
C 99993 Cell motility
D VFMJ11_1211 lipoprotein, putative K07337 K07337; penicillin-binding protein activator
D VFMJ11_1676 DNA transformation protein TfoX K07343 tfoX; DNA transformation protein and related proteins
D VFMJ11_0934 DNA transformation protein TfoX K07343 tfoX; DNA transformation protein and related proteins
D VFMJ11_B0150 TfoX C-terminal domain family protein K07343 tfoX; DNA transformation protein and related proteins
D VFMJ11_0613 protein syd K15723 syd; SecY interacting protein Syd
C 99995 Signaling proteins
D VFMJ11_1357 ProP effector K03607 proQ; ProP effector
D VFMJ11_0081 universal stress protein A K06149 uspA; universal stress protein A
D VFMJ11_1386 universal stress protein family protein K14055 uspE; universal stress protein E
D VFMJ11_0260 universal stress protein family protein K14061 uspF; universal stress protein F
D VFMJ11_0097 typA; GTP-binding protein TypA/BipA K06207 typA; GTP-binding protein
D VFMJ11_A0890 transcriptional activator ChrR K07167 chrR; putative transcriptional regulator
D VFMJ11_0777 PhoH family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D VFMJ11_1899 PrkA AAA K07180 prkA; serine protein kinase
D VFMJ11_2501 cyclic nucleotide binding protein K07182 K07182; CBS domain-containing protein
D VFMJ11_A0388 cyclic nucleotide binding protein K07182 K07182; CBS domain-containing protein
D VFMJ11_2639 cyclic nucleotide binding protein K07182 K07182; CBS domain-containing protein
D VFMJ11_2352 arylsulfatase K07184 ygiM; SH3 domain protein
D VFMJ11_0510 SMP protein K07186 smp; membrane protein
D VFMJ11_1323 conserved hypothetical protein K09767 yajQ; cyclic-di-GMP-binding protein
C 99992 Structural proteins
D VFMJ11_0944 lolA; outer membrane lipoprotein carrier protein LolA K03634 lolA; outer membrane lipoprotein carrier protein
D VFMJ11_0802 lolB; outer membrane lipoprotein LolB K02494 lolB; outer membrane lipoprotein LolB
D VFMJ11_1948 lipoprotein VacJ K04754 mlaA; phospholipid-binding lipoprotein MlaA
D VFMJ11_2087 chaperone protein skp K06142 hlpA; outer membrane protein
D VFMJ11_2174 lipoprotein NlpD K06194 nlpD; lipoprotein NlpD
D VFMJ11_0492 lipoprotein NlpI K05803 nlpI; lipoprotein NlpI
D VFMJ11_0287 outer membrane protein K07283 ydiY; putative salt-induced outer membrane protein
D VFMJ11_1071 conserved hypothetical protein K07283 ydiY; putative salt-induced outer membrane protein
D VFMJ11_1836 outer membrane protein Slp K07285 slp; outer membrane lipoprotein
D VFMJ11_0742 lipoprotein K07286 yajG; uncharacterized lipoprotein
D VFMJ11_1878 AsmA K07289 asmA; AsmA protein
D VFMJ11_A0203 membrane protein K07340 ybbJ; inner membrane protein
D VFMJ11_A0599 multidrug resistance protein A K01993 ABC-2.TX; HlyD family secretion protein
D VFMJ11_A0137 multidrug resistance protein A K01993 ABC-2.TX; HlyD family secretion protein
D VFMJ11_1953 cytoChrome c-type biogenesis protein CcmE K02197 ccmE; cytochrome c-type biogenesis protein CcmE
D VFMJ11_1950 cytochrome c-type biogenesis protein CcmH K02200 ccmH; cytochrome c-type biogenesis protein CcmH
D VFMJ11_0642 integral membrane protein K15539 rodZ; cytoskeleton protein RodZ
C 99994 Others
D VFMJ11_2119 phoU; phosphate transport system regulatory protein PhoU K02039 phoU; phosphate transport system protein
D VFMJ11_A0314 tellurium resistance protein TerC K05794 terC; tellurite resistance protein TerC
D VFMJ11_2110 copper homeostasis protein CutC K06201 cutC; copper homeostasis protein
D VFMJ11_2611 cyaY; iron donor protein CyaY K06202 cyaY; iron-sulfur cluster assembly protein CyaY
D VFMJ11_1307 oxygen-independent coproporphyrinogen III oxidase K07227 chuX; heme iron utilization protein
D VFMJ11_1268 insulin-cleaving metalloproteinase outer membrane protein K07231 K07231; putative iron-regulated protein
D VFMJ11_A0488 asparagine synthetase (glutamine-hydrolyzing) K07234 K07234; uncharacterized protein involved in response to NO
B
B 09194 Poorly characterized
C 99996 General function prediction only
D VFMJ11_1817 cvpA; CvpA family protein K03558 cvpA; membrane protein required for colicin V production
D VFMJ11_1389 BAX protein K03796 bax; Bax protein
D VFMJ11_1175 BAX protein K03796 bax; Bax protein
D VFMJ11_A0145 virulence factor MviM K03810 mviM; virulence factor
D VFMJ11_0304 acetyltransferase K02348 elaA; ElaA protein
D VFMJ11_A0899 putative hydrolase K04477 ycdX; putative hydrolase
D VFMJ11_A0091 putative hydrolase K04477 ycdX; putative hydrolase
D VFMJ11_2221 formate acetyltransferase K06866 grcA; autonomous glycyl radical cofactor
D VFMJ11_A0399 methionyl-tRNA synthetase (Methionine--tRNA ligase)(MetRS) K06878 K06878; tRNA-binding protein
D VFMJ11_2267 serine protease K07001 K07001; NTE family protein
D VFMJ11_1921 serine protease K07001 K07001; NTE family protein
D VFMJ11_A0803 serine protease K07001 K07001; NTE family protein
D VFMJ11_2242 iron-binding protein ErpA K15724 erpA; iron-sulfur cluster insertion protein
D VFMJ11_0098 tRNA-processing ribonuclease BN K07058 K07058; membrane protein
D VFMJ11_2473 FxsA protein K07113 fxsA; UPF0716 protein FxsA
D VFMJ11_0603 csdE; cysteine desulfurase, sulfur acceptor subunit CsdE K02426 sufE; cysteine desulfuration protein SufE
D VFMJ11_1913 protein/y1798/ K07153 hflD; high frequency lysogenization protein
D VFMJ11_0213 conserved domain protein K03745 slyX; SlyX protein
D VFMJ11_2671 Smg protein K03747 smg; Smg protein
D VFMJ11_A0550 CreA protein K05805 creA; CreA protein
D VFMJ11_0438 protein SprT K02742 sprT; SprT protein
D VFMJ11_1818 DedD protein K03749 dedD; DedD protein
D VFMJ11_2402 conserved hypothetical protein K03112 damX; DamX protein
D VFMJ11_1656 SanA protein K03748 sanA; SanA protein
D VFMJ11_1354 paraquat-inducible protein A K03808 pqiA; paraquat-inducible protein A
D VFMJ11_A0939 integral membrane protein K08974 K08974; putative membrane protein
D VFMJ11_1947 hypothetical membrane spanning protein K08984 yjdF; putative membrane protein
D VFMJ11_0087 hypothetical outer membrane protein K08985 K08985; putative lipoprotein
D VFMJ11_A0353 conserved hypothetical protein K08990 ycjF; putative membrane protein
D VFMJ11_2578 conserved hypothetical protein K08993 yhhL; putative membrane protein
D VFMJ11_1714 protein translocase subunit SecA K09858 K09858; SEC-C motif domain protein
D VFMJ11_1679 glycoprotein/polysaccharide metabolism K09914 K09914; putative lipoprotein
D VFMJ11_1417 phosphoribosylaminoimidazole carboxylase ATPase subunit K11312 K11312; cupin 2 domain-containing protein
D VFMJ11_2383 maltose operon periplasmic protein K05775 malM; maltose operon periplasmic protein
D VFMJ11_0105 psiE; protein PsiE K13256 psiE; protein PsiE
D VFMJ11_A0591 PhnA protein K06193 phnA; protein PhnA
D VFMJ11_1423 phnA; alkylphosphonate utilization operon protein PhnA K06193 phnA; protein PhnA
D VFMJ11_1338 MC21 protein K21741 rclC; reactive chlorine resistance protein C
C 99997 Function unknown
D VFMJ11_2159 AnkB protein K06867 K06867; uncharacterized protein
D VFMJ11_1509 chondroitin sulfate/heparin utilization regulation protein K06871 K06871; uncharacterized protein
D VFMJ11_A1016 chondroitin sulfate/heparin utilization regulation protein K06871 K06871; uncharacterized protein
D VFMJ11_A0240 chondroitin sulfate/heparin utilization regulation protein K06871 K06871; uncharacterized protein
D VFMJ11_A1112 chondroitin sulfate/heparin utilization regulation protein K06871 K06871; uncharacterized protein
D VFMJ11_A0078 chondroitin sulfate/heparin utilization regulation protein K06871 K06871; uncharacterized protein
D VFMJ11_A0352 amino acid regulated cytosolic protein K06918 K06918; uncharacterized protein
D VFMJ11_1787 Fe-S-cluster domain protein K06940 K06940; uncharacterized protein
D VFMJ11_1410 metal-dependent phosphohydrolase K06950 K06950; uncharacterized protein
D VFMJ11_A0887 amine oxidase K06954 K06954; uncharacterized protein
D VFMJ11_1606 transporter, DAACS family K06956 K06956; uncharacterized protein
D VFMJ11_A0850 acetyltransferase K06975 K06975; uncharacterized protein
D VFMJ11_0675 succinylglutamate desuccinylase/aspartoacylase family protein K06987 K06987; uncharacterized protein
D VFMJ11_1217 protein VV1_2072 K07000 K07000; uncharacterized protein
D VFMJ11_2340 esterase YqiA K07000 K07000; uncharacterized protein
D VFMJ11_1547 nuclease K07004 K07004; uncharacterized protein
D VFMJ11_1770 sulfatase K07014 K07014; uncharacterized protein
D VFMJ11_0206 hydrolase, alpha/beta fold family K07019 K07019; uncharacterized protein
D VFMJ11_1230 transcriptional regulator K07034 K07034; uncharacterized protein
D VFMJ11_1020 YecA family protein K07039 K07039; uncharacterized protein
D VFMJ11_1756 SecA, C-motif domain protein K07039 K07039; uncharacterized protein
D VFMJ11_0211 conserved hypothetical protein K07070 K07070; uncharacterized protein
D VFMJ11_0825 conserved hypothetical protein K07071 K07071; uncharacterized protein
D VFMJ11_1166 immunogenic protein K07080 K07080; uncharacterized protein
D VFMJ11_0262 immunogenic protein K07080 K07080; uncharacterized protein
D VFMJ11_A0209 permease K07089 K07089; uncharacterized protein
D VFMJ11_1091 hypothetical membrane spanning protein K07090 K07090; uncharacterized protein
D VFMJ11_1195 conserved domain protein, putative K07090 K07090; uncharacterized protein
D VFMJ11_0457 thymidylate synthase K07090 K07090; uncharacterized protein
D VFMJ11_A1175 twin-arginine translocation pathway signal K07093 K07093; uncharacterized protein
D VFMJ11_0826 phosphodiesterase YfcE K07095 K07095; uncharacterized protein
D VFMJ11_0316 conserved hypothetical protein K07109 K07109; uncharacterized protein
D VFMJ11_2166 YeeE/YedE family protein K07112 K07112; uncharacterized protein
D VFMJ11_2167 YeeE/YedE K07112 K07112; uncharacterized protein
D VFMJ11_2323 GS60 antigen K07121 K07121; uncharacterized protein
D VFMJ11_1571 tetratricopeptide repeat family protein K07126 K07126; uncharacterized protein
D VFMJ11_1634 suppressor/enhancer of lin-12 K07126 K07126; uncharacterized protein
D VFMJ11_2229 radical SAM protein, family K07139 K07139; uncharacterized protein
D VFMJ11_A0299 oxidoreductase K07140 K07140; MOSC domain-containing protein
D VFMJ11_2362 GatB/Yqey domain protein K09117 K09117; uncharacterized protein
D VFMJ11_0427 conserved hypothetical protein K09131 K09131; uncharacterized protein
D VFMJ11_0763 protein VV1_0282 K09158 K09158; uncharacterized protein
D VFMJ11_1786 protein VV1_2014 K09160 K09160; uncharacterized protein
D VFMJ11_1926 protein VV1_2093 K09161 K09161; uncharacterized protein
D VFMJ11_A0886 plasmid partition ParA protein K09701 K09701; uncharacterized protein
D VFMJ11_1038 lipoprotein, putative K09712 K09712; uncharacterized protein
D VFMJ11_1588 hypothetical cytosolic protein K09749 K09749; uncharacterized protein
D VFMJ11_A1252 hypothetical cytosolic protein K09749 K09749; uncharacterized protein
D VFMJ11_0615 protein VV1_1847 K09768 K09768; uncharacterized protein
D VFMJ11_1106 protein YciI K09780 K09780; uncharacterized protein
D VFMJ11_A0303 inner membrane protein YedI K09781 K09781; uncharacterized protein
D VFMJ11_1900 protein VV1_2091 K09786 K09786; uncharacterized protein
D VFMJ11_A0475 tetraacyldisaccharide 4'-kinase (Lipid A 4'-kinase) K09791 K09791; uncharacterized protein
D VFMJ11_1384 integral membrane protein K09792 K09792; uncharacterized protein
D VFMJ11_A0949 conserved hypothetical protein K09794 K09794; uncharacterized protein
D VFMJ11_2137 protein VV1_0369 K09801 K09801; uncharacterized protein
D VFMJ11_A0615 protein VV2_0759 K09802 K09802; uncharacterized protein
D VFMJ11_2212 conserved hypothetical protein K09807 K09807; uncharacterized protein
D VFMJ11_1528 putative periplasmic protein K05952 K05952; uncharacterized protein
D VFMJ11_0752 conserved domain protein K05952 K05952; uncharacterized protein
D VFMJ11_1327 RNA binding S1 domain protein K00243 K00243; uncharacterized protein
D VFMJ11_1209 tetratricopeptide repeat domain protein K09859 K09859; uncharacterized protein
D VFMJ11_2214 protein VV1_0535 K09861 K09861; uncharacterized protein
D VFMJ11_2304 conserved domain protein K09862 K09862; uncharacterized protein
D VFMJ11_2517 D-fructose-6-phosphate amidotransferase K09891 K09891; uncharacterized protein
D VFMJ11_0076 protein VV1_0896 K09894 K09894; uncharacterized protein
D VFMJ11_2207 protein VV1_1551 K09895 K09895; uncharacterized protein
D VFMJ11_2682 glycogen debranching enzyme K09896 K09896; uncharacterized protein
D VFMJ11_A1166 conserved hypothetical protein K09897 K09897; uncharacterized protein
D VFMJ11_0205 conserved domain protein K09898 K09898; uncharacterized protein
D VFMJ11_0876 membrane protein K09899 K09899; uncharacterized protein
D VFMJ11_0948 protein VV1_3059 K09901 K09901; uncharacterized protein
D VFMJ11_1829 YcgL domain superfamily protein K09902 K09902; uncharacterized protein
D VFMJ11_1769 conserved domain protein K09904 K09904; uncharacterized protein
D VFMJ11_0878 protein YecM K09907 K09907; uncharacterized protein
D VFMJ11_2335 conserved hypothetical protein K09908 K09908; uncharacterized protein
D VFMJ11_1730 protein VV2_0960 K09909 K09909; uncharacterized protein
D VFMJ11_2262 protein VV1_1657 K09910 K09910; uncharacterized protein
D VFMJ11_1372 protein VV1_2627 K09911 K09911; uncharacterized protein
D VFMJ11_A0332 nucleoprotein/polynucleotide-associated enzyme K09912 K09912; uncharacterized protein
D VFMJ11_A0613 protein VV2_0756 K09915 K09915; uncharacterized protein
D VFMJ11_0954 general negative regulator of transcription subunit 1 K09916 K09916; uncharacterized protein
D VFMJ11_A0576 conserved domain protein K09917 K09917; uncharacterized protein
D VFMJ11_0591 DNA damage-inducible gene in SOS regulon, dependent on cyclic AMP and H-NS K09918 K09918; uncharacterized protein
D VFMJ11_2342 phosphohydrolase K09920 K09920; uncharacterized protein
D VFMJ11_2607 3'-5'-cyclic nucleotide phosphodiesterase K09921 K09921; uncharacterized protein
D VFMJ11_1214 conserved hypothetical protein K09923 K09923; uncharacterized protein
D VFMJ11_1381 lipoprotein, putative K09926 K09926; uncharacterized protein
D VFMJ11_A0471 flagellar biosynthesis protein FlhF K09928 K09928; uncharacterized protein
D VFMJ11_2432 conserved hypothetical protein K09937 K09937; uncharacterized protein
D VFMJ11_2060 conserved hypothetical protein K09938 K09938; uncharacterized protein
D VFMJ11_A1160 conserved hypothetical protein K09941 K09941; uncharacterized protein
D VFMJ11_1271 lipoprotein, putative K09947 K09947; uncharacterized protein
D VFMJ11_0312 conserved hypothetical protein K09950 K09950; uncharacterized protein
D VFMJ11_1011 conserved hypothetical protein K09950 K09950; uncharacterized protein
D VFMJ11_A0449 conserved domain protein K09954 K09954; uncharacterized protein
D VFMJ11_A0748 conserved hypothetical protein K09962 K09962; uncharacterized protein
D VFMJ11_A0401 transporter K09964 K09964; uncharacterized protein
D VFMJ11_2350 conserved hypothetical protein K07220 K07220; uncharacterized protein
D VFMJ11_1270 imelysin superfamily protein K07338 K07338; uncharacterized protein
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: May 9, 2024