+E Transcription factors KO
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Transcription Factors - Vibrio vulnificus CMCP6
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D VV1_0150 Signal transduction histidine kinase K19693 tfoS; AraC family transcriptional regulator, chitin signaling transcriptional activator
D VV2_1661 AraC-type DNA-binding domain-containing protein K13652 K13652; AraC family transcriptional regulator
D VV2_1338 Transcriptional regulator, AraC family K13653 K13653; AraC family transcriptional regulator
D VV2_1208 3-methyladenine DNA glycosylase K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
C LysR family
D VV1_0306 Glycine cleavage system transcriptional activator GcvA K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D VV1_1076 HTH-type transcriptional regulator ilvY K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D VV1_2218 Transcriptional activator MetR K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D VV1_0513 Transcriptional activator NhaR K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D VV1_1375 Hydrogen peroxide-inducible gene activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D VV1_0451 Transcriptional regulator, LysR family K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D VV1_1544 Chromosome initiation inhibitor K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D VV1_0650 Transcriptional regulator, LysR family K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon
D VV1_1998 putative transcriptional regulator, LysR family K10918 aphB; LysR family transcriptional regulator, transcriptional activator AphB
D VV1_2954 Regulatory protein CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D VV2_1049 Transcriptional regulator, LysR family K13636 dsdC; LysR family transcriptional regulator, D-serine deaminase activator
D VV2_1132 Transcriptional regulator K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
D VV2_1206 Transcriptional regulator, LysR family K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
C DeoR family
D VV1_1786 Glycerol-3-phosphate regulon repressor, DeoR family K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D VV1_2753 Glycerol-3-phosphate regulon repressor, DeoR family K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D VV2_1026 Transcriptional repressor of aga operon K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor
D VV2_1025 Transcriptional repressor of aga operon K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor
D VV2_1079 Putative DeoR-type transcriptional regulator K03477 ulaR; DeoR family transcriptional regulator, ulaG and ulaABCDEF operon transcriptional repressor
C LacI family
D VV2_1060 Putative transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D VV2_1297 Transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D VV1_1775 Galactose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D VV2_0066 Ribose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D VV2_1282 Transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D VV2_1323 Galactose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D VV1_1358 Transcriptional (co)regulator CytR K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D VV2_0201 Fructose repressor FruR, LacI family K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D VV1_0290 treR; trehalose operon repressor K03485 treR; LacI family transcriptional regulator, trehalose operon repressor
D VV1_2138 Purine nucleotide synthesis repressor K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
D VV1_1098 Gluconate utilization system Gnt-I transcriptional repressor K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D VV1_1769 Evolved beta-D-galactosidase transcriptional repressor K12113 ebgR; LacI family transcriptional regulator, ebg operon repressor
C GntR family
D VV1_2393 hutC; histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D VV1_2233 fadR; fatty acid metabolism transcriptional regulator FadR K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D VV1_1629 Transcriptional repressor for pyruvate dehydrogenase complex K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D VV2_1065 Uxu operon transcriptional regulator K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor
D VV2_0776 Transcriptional regulator, GntR family / aminotransferase class-I K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
C TetR/AcrR family
D VV2_1686 betI; transcriptional repressor BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D VV1_1081 Transcriptional regulator TetR family K18136 acrR; TetR/AcrR family transcriptional regulator, multidrug resistance operon repressor
D VV1_0829 Transcriptional regulator K05501 slmA; TetR/AcrR family transcriptional regulator
D VV1_1634 Quorum-sensing regulator of virulence HapR K10913 hapR; TetR/AcrR family transcriptional regulator, hemagglutinin/protease regulatory protein
D VV2_0601 Transcriptional regulator K19736 aefR; TetR/AcrR family transcriptional regulator, regulator of autoinduction and epiphytic fitness
D VV2_1388 Transcriptional regulator K19736 aefR; TetR/AcrR family transcriptional regulator, regulator of autoinduction and epiphytic fitness
D VV2_0506 Transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D VV1_1169 Unsaturated fatty acid biosythesis repressor FabR, TetR family K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
C Lrp/AsnC family
D VV1_1109 Transcriptional regulator AsnC K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D VV1_2951 Leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D VV2_1112 PutR, transcriptional activator of PutA and PutP K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D VV2_0749 Transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D VV1_3152 Putative HTH-type transcriptional regulator ybaO K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
C LuxR family
D VV2_1569 Transcriptional regulator VpsT K20918 vpsT; LuxR family transcriptional regulator, positive regulator of biofilm formation
D VV2_1247 Transcriptional activator of maltose regulon, MalT K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
C MarR family
D VV2_0576 Organic hydroperoxide resistance transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D VV2_0113 cueR; Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D VV1_1229 zntR; Zn(II)-responsive transcriptional regulator K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA
D VV2_0936 soxR; redox-sensitive transcriptional activator SoxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
C Fur family
D VV1_0175 Ferric uptake regulation protein FUR K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
C IclR family
D VV2_0915 Transcriptional regulator KdgR, KDG operon repressor K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
C CRP/FNR family
D VV1_1318 Cyclic AMP receptor protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D VV1_2610 Fumarate and nitrate reduction regulatory protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
C Rrf2 family
D VV1_0439 iscR; iron-sulfur cluster assembly transcription factor IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D VV1_1302 Nitrite-sensitive transcriptional repressor NsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
C ArsR family
D VV1_1140 Transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D VV2_0894 Arsenical resistance operon repressor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D VV1_0512 Transcriptional activator HlyU K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator
C XRE family
C PadR family
D VV1_1367 Predicted transcriptional regulator K10917 aphA; PadR family transcriptional regulator, regulatory protein AphA
C Other families
D VV2_1140 Transcriptional regulator, RpiR family K15835 murR; RpiR family transcriptional regulator, murPQ operon repressor
D VV1_2825 Glucose repressor HexR for Entner-Doudoroff pathway, RpiR family K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D VV1_1198 Biotin-protein ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D VV1_1231 DNA-binding protein fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D VV1_0489 trpR; trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor
D VV2_0254 SgrR, sugar-phosphate stress, transcriptional activator of SgrS small RNA K11925 sgrR; SgrR family transcriptional regulator
D VV1_0378 Predicted transcriptional regulator K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D VV1_1931 Flagellar regulatory protein fleQ K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D VV1_0525 Transcriptional regulator VpsR K20919 vpsR; sigma-54 dependent transcriptional regulator, positive regulator of biofilm formation
D VV2_0870 Sigma-54 dependent transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D VV2_1342 Anaerobic nitric oxide reductase transcription regulator norR K12266 norR; anaerobic nitric oxide reductase transcription regulator
D VV1_2863 Anaerobic nitric oxide reductase transcription regulator norR K12266 norR; anaerobic nitric oxide reductase transcription regulator
D VV1_1656 Sugar diacid utilization regulator SdaR K02647 cdaR; carbohydrate diacid regulator
D VV1_2191 probable transcriptional regulator K07729 K07729; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
D VV1_1362 Methionine repressor MetJ K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
D VV2_1118 Proline dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
C Others
D VV1_1820 Cell division protein BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D VV1_1013 Chromosome (plasmid) partitioning protein ParB / Stage 0 sporulation protein J K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D VV2_1172 Chromosome (plasmid) partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D VV1_0184 rfaH; transcriptional activator RfaH K05785 rfaH; transcriptional antiterminator RfaH
D VV1_0674 argR; arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D VV1_0181 N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family K02565 nagC; N-acetylglucosamine repressor
D VV1_2991 Mlc, transcriptional repressor of MalT (the transcriptional activator of maltose regulon) and manXYZ operon K15545 mlc; transcriptional regulator of PTS gene
D VV1_0640 Mannitol operon repressor K02562 mtlR; mannitol operon repressor
D VV1_2270 Transcriptional repressor protein TyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D VV1_2058 Transcriptional activator of cad operon K03765 cadC; transcriptional activator of cad operon
D VV1_1911 Glycine cleavage system transcriptional antiactivator GcvR K03567 gcvR; glycine cleavage system transcriptional repressor
D VV1_2880 pspF; psp operon transcriptional activator K03974 pspF; psp operon transcriptional activator
D VV1_2877 pspC; phage shock protein C K03973 pspC; phage shock protein C
D VV2_0616 Regulator of nucleoside diphosphate kinase K06140 rnk; regulator of nucleoside diphosphate kinase
D VV1_1529 UPF0301 protein yqgE K07735 algH; putative transcriptional regulator
D VV1_1648 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor
D VV1_0324 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D VV1_0327 Curlin genes transcriptional activator K11926 crl; sigma factor-binding protein Crl
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 8, 2024
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Classification taken and modified from TRANSFAC 7.0