+E Transcription factors KO
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Transcription Factors - Vibrio vulnificus YJ016
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D VV1590 AraC-type DNA-binding domain-containing protein K02508 hpaA; AraC family transcriptional regulator, 4-hydroxyphenylacetate 3-monooxygenase operon regulatory protein
D VVA0468 AraC-type DNA-binding domain-containing protein K18991 mtrA; AraC family transcriptional regulator, activator of mtrCDE
D VV1039 putative transcriptional regulator, AraC/XylS family K19693 tfoS; AraC family transcriptional regulator, chitin signaling transcriptional activator
D VVA0473 AraC-type DNA-binding domain-containing protein K13652 K13652; AraC family transcriptional regulator
D VVA1253 conserved hypothetical protein K13652 K13652; AraC family transcriptional regulator
D VVA1645 AraC-type DNA-binding domain-containing protein K07506 K07506; AraC family transcriptional regulator
D VVA0035 adenosine deaminase K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
C LysR family
D VV0878 transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D VV0034 transcriptional activator IlvY K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D VV2136 transcriptional activator MetR K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D VV0682 transcriptional activator K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D VV2996 transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D VV0740 transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D VV2854 transcriptional regulator K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D VV0493 transcriptional regulator K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon
D VV2418 transcriptional regulator K10918 aphB; LysR family transcriptional regulator, transcriptional activator AphB
D VV1318 cys regulon transcriptional activator K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D VVA1564 transcriptional regulator K13636 dsdC; LysR family transcriptional regulator, D-serine deaminase activator
D VVA0033 transcriptional regulator K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
C DeoR family
D VV0526 transcriptional regulator of sugar metabolism K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor
D VV1508 transcriptional regulator of sugar metabolism K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D VV2625 transcriptional regulator of sugar metabolism K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D VVA1520 transcriptional regulator of sugar metabolism K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor
D VVA1518 transcriptional regulator of sugar metabolism K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor
D VV0536 transcriptional regulator of sugar metabolism K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor
D VV2181 putative L-fucose operon activator K02430 fucR; DeoR family transcriptional regulator, L-fucose operon activator
D VVA1603 transcriptional regulator of sugar metabolism K03477 ulaR; DeoR family transcriptional regulator, ulaG and ulaABCDEF operon transcriptional repressor
C LacI family
D VVA0123 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D VVA0160 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D VVA0138 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D VV2633 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D VVA0573 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D VV3013 transcriptional regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D VVA0708 transcriptional regulator K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D VV0894 trehalose operon repressor K03485 treR; LacI family transcriptional regulator, trehalose operon repressor
D VV2305 transcriptional regulator K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
D VV0057 gluconate utilization system Gnt-I transcriptional repressor K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D VV2640 evolved beta-D-galactosidase, operon repressor K12113 ebgR; LacI family transcriptional regulator, ebg operon repressor
C GntR family
D VV1948 histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D VV2121 fatty acid metabolism regulator protein K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D VV2774 pyruvate dehydrogenase complex repressor K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D VVA1589 transcriptional regulator K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor
D VVA1573 conserved hypothetical protein K19776 dgoR; GntR family transcriptional regulator, galactonate operon transcriptional repressor
D VVA1245 putative transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
C TetR/AcrR family
D VVA0506 transcriptional regulator K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D VV0039 transcriptional regulator K18136 acrR; TetR/AcrR family transcriptional regulator, multidrug resistance operon repressor
D VV0282 transcriptional regulator K05501 slmA; TetR/AcrR family transcriptional regulator
D VV2770 SmcR-like protein VvpR K10913 hapR; TetR/AcrR family transcriptional regulator, hemagglutinin/protease regulatory protein
D VVA1153 transcriptional regulator K19736 aefR; TetR/AcrR family transcriptional regulator, regulator of autoinduction and epiphytic fitness
D VVA0224 transcriptional regulator K19736 aefR; TetR/AcrR family transcriptional regulator, regulator of autoinduction and epiphytic fitness
D VVA1056 transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D VV0127 transcriptional regulator K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
C Lrp/AsnC family
D VV0069 transcriptional regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D VV1321 leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D VVA1638 transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D VVA1217 transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D VVA0083 transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D VV1134 transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
C LuxR family
D VV2954 DNA-binding HTH domain-containing protein K04333 csgD; LuxR family transcriptional regulator, csgAB operon transcriptional regulatory protein
D VVA0383 DNA-binding HTH domain-containing protein K04333 csgD; LuxR family transcriptional regulator, csgAB operon transcriptional regulatory protein
D VVA0382 DNA-binding HTH domain-containing protein K20918 vpsT; LuxR family transcriptional regulator, positive regulator of biofilm formation
D VVA0076 ATP-dependent transcriptional regulator K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
C MarR family
D VVA1124 transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D VVA0622 predicted transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D VV3141 predicted transcriptional regulator K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA
D VVA1425 predicted transcriptional regulator K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
D VVA0356 predicted transcriptional regulator K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator
C Fur family
D VV1014 ferric uptake regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D VV2973 putative zinc uptake regulation protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
C IclR family
D VVA1402 transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D VV0550 transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
C CRP/FNR family
D VV3050 cAMP-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D VV1679 fumarate and nitrate reduction regulatory protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
C Rrf2 family
D VV0754 predicted transcriptional regulator K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D VV3063 predicted transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
C ArsR family
D VV0099 predicted transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D VVA1363 predicted transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D VV0683 transcriptional activator K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator
C XRE family
C PadR family
D VV3005 predicted transcriptional regulator K10917 aphA; PadR family transcriptional regulator, regulatory protein AphA
C Other families
D VVA1666 transcriptional regulator K15835 murR; RpiR family transcriptional regulator, murPQ operon repressor
D VV1441 transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D VVA1396 transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D VV3169 biotin-(acetyl-CoA carboxylase) ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D VV3139 factor-for-inversion stimulation protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D VV0707 Trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor
D VVA0758 ABC-type uncharacterized transport system, periplasmic component K11925 sgrR; SgrR family transcriptional regulator
D VV2485 polar flagellar protein FlaK K10941 flrA; sigma-54 dependent transcriptional regulator, flagellar regulatory protein
D VV0670 sigma-54 dependent transcriptional regulator K20919 vpsR; sigma-54 dependent transcriptional regulator, positive regulator of biofilm formation
D VVA1342 sigma-54 dependent transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D VVA0180 transcriptional regulator K12266 norR; anaerobic nitric oxide reductase transcription regulator
D VV1407 transcriptional regulator K12266 norR; anaerobic nitric oxide reductase transcription regulator
D VV2749 sugar diacid utilization regulator K02647 cdaR; carbohydrate diacid regulator
B Ribbon-helix-helix
C CopG family
C Other families
D VV3009 transcriptional regulator of met regulon K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
D VVA1644 proline dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
C Others
D VV2591 cell division protein BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D VV3259 parB family protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D VVA1695 predicted transcriptional regulator K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D VV1006 transcription antiterminator K05785 rfaH; transcriptional antiterminator RfaH
D VV0466 arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D VV1010 N-acetylglucosamine repressor K02565 nagC; N-acetylglucosamine repressor
D VV1290 transcriptional regulator K15545 mlc; transcriptional regulator of PTS gene
D VV0503 mannitol operon repressor K02562 mtlR; mannitol operon repressor
D VV2075 transcriptional regulator TyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D VV2384 putative transcriptional activator CadC K03765 cadC; transcriptional activator of cad operon
D VV2505 glycine cleavage system regulatory protein K03567 gcvR; glycine cleavage system transcriptional repressor
D VV1391 transcriptional regulator K03974 pspF; psp operon transcriptional activator
D VV1394 phage shock protein C K03973 pspC; phage shock protein C
D VVA1174 transcription elongation factor K06140 rnk; regulator of nucleoside diphosphate kinase
D VV0262 conserved hypothetical protein K07733 alpA; prophage regulatory protein
D VV0810 predicted transcriptional regulator K07733 alpA; prophage regulatory protein
D VV0515 predicted transcriptional regulator K07733 alpA; prophage regulatory protein
D VV2250 predicted transcriptional regulator K07733 alpA; prophage regulatory protein
D VV2261 predicted transcriptional regulator K07733 alpA; prophage regulatory protein
D VV2869 putative transcriptional regulator K07735 algH; putative transcriptional regulator
D VV2759 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D VV0860 predicted transcriptional regulator K07738 nrdR; transcriptional repressor NrdR
D VV0857 transcriptional regulator Crl K11926 crl; sigma factor-binding protein Crl
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 8, 2024
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Classification taken and modified from TRANSFAC 7.0