+F Repair protein KO #

  DNA Repair and Recombination Proteins - Xanthomonas campestris pv. campestris ATCC 33913

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D XCC2653 ogt; 6-O-methylguanine-DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D XCC1435 phr; photolyase-like protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E XCC3772 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E XCC2316 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E XCC2418 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E XCC1532 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases D XCC3198 endonuclease K05986 NUCS; nuclease S1 [EC:3.1.30.1] C Helicases C PSO4 complex C Modulation of nucleotide pools D XCC2163 mutT; 7,8-dihydro-8-oxoguanine-triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D XCC0736 bifunctional DGTP-pyrophosphohydrolase/thiamine phosphate synthase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D XCC3858 dut; dUTPase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D XCC2653 ogt; 6-O-methylguanine-DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D XCC1435 phr; photolyase-like protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D XCC1282 conserved hypothetical protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] C BER (base exicision repair) D DNA glycosylases E XCC3772 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E XCC3664 DNA polymerase related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E XCC3881 DNA polymerase-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E XCC1131 DNA-3-methyladenine glycosylase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E XCC2652 Ada; DNA methylation and regulatory protein Ada or K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E XCC2316 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E XCC2418 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E XCC2750 tag; DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E XCC4147 mutM; formamidopyrimidine DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E XCC3527 endonuclease K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] E XCC1532 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E XCC1998 xthA2; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E XCC3846 exoA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E XCC4046 xthA1; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E XCC2713 nfi; endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E XCC1846 recJ; putative single stranded DNA exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E XCC1570 lig1; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E XCC4020 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E XCC1148 uvrA1; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E XCC1088 uvrA2; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E XCC2485 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E XCC2115 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E XCC2427 excinuclease ABC subunit C homolog K05984 cho; excinuclease Cho [EC:3.1.25.-] E XCC4026 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E XCC4020 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E XCC1570 lig1; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F XCC0888 rpoB; RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F XCC0889 rpoC; RNA polymerase beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F XCC0919 rpoA; RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F XCC3248 rpoZ; RNA polymerase omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F XCC2698 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E XCC1207 mutS; DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E XCC2298 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E XCC1551 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] E XCC2303 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E XCC2599 xseB; exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E XCC1358 dnaE1; DNA polymerase III alpha chain K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E XCC0002 dnaN; DNA polymerase III beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E XCC0648 holC; DNA polymerase III holoenzyme chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E XCC2617 holA; DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E XCC1023 holB; DNA polymerase III delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E XCC0988 dnaQ; DNA polymerase III epsilon chain K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E XCC1001 dnaX; DNA polymerase III tau and gamma subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E XCC1570 lig1; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E XCC4026 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E XCC2735 ssb; single-stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E XCC4199 recB; exodeoxyribonuclease V beta chain K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E XCC4200 recC; exodeoxyribonuclease V gamma chain K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E XCC4198 recD; exodeoxyribonuclease V alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E XCC1722 recA; RecA protein K03553 recA; recombination protein RecA E XCC3025 ruvA; holliday junction binding protein, DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA E XCC3023 ruvB; holliday junction binding protein, DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E XCC3026 ruvC; holliday junction resolvase, endodeoxyribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E XCC3765 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E XCC1551 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] D RecFOR pathway proteins E XCC1722 recA; RecA protein K03553 recA; recombination protein RecA E XCC1164 radA; DNA repair protein K04485 radA; DNA repair protein RadA/Sms E XCC0003 recF; DNA replication and repair RecF protein K03629 recF; DNA replication and repair protein RecF E XCC3238 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E XCC1846 recJ; putative single stranded DNA exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E XCC1275 recO; DNA repair protein K03584 recO; DNA repair protein RecO (recombination protein O) E XCC1003 recR; recombination protein RecR K06187 recR; recombination protein RecR E XCC1471 recN; recombination protein N K03631 recN; DNA repair protein RecN (Recombination protein N) E XCC4098 conserved hypothetical protein K03554 rdgC; recombination associated protein RdgC E XCC3025 ruvA; holliday junction binding protein, DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA E XCC3023 ruvB; holliday junction binding protein, DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E XCC3026 ruvC; holliday junction resolvase, endodeoxyribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins E XCC2558 conserved hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E XCC0104 conserved hypothetical protein K10979 ku; DNA end-binding protein Ku E XCC2307 lig3; ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E XCC0105 ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F XCC1574 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F XCC0004 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F XCC3755 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F XCC0978 hupB; histone-like protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F XCC1846 recJ; putative single stranded DNA exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F XCC1275 recO; DNA repair protein K03584 recO; DNA repair protein RecO (recombination protein O) F XCC1003 recR; recombination protein RecR K06187 recR; recombination protein RecR F XCC1570 lig1; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F XCC0508 fis; DNA-binding protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F XCC2457 himA; integration host factor alpha chain K04764 ihfA; integration host factor subunit alpha F XCC2193 ihfB; integration host factor beta subunit K05788 ihfB; integration host factor subunit beta E Supressor F XCC1551 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1] F XCC2947 recQ; DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F XCC1148 uvrA1; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F XCC1088 uvrA2; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F XCC2485 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B F XCC0637 DNA-binding protein K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D XCC0583 dinP; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D XCC2964 umuC; polymerase V subunit K03502 umuC; DNA polymerase V D XCC2963 umuD; polymerase V subunit K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D XCC1722 recA; RecA protein K03553 recA; recombination protein RecA D XCC1098 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D XCC1721 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D XCC1471 recN; recombination protein N K03631 recN; DNA repair protein RecN (Recombination protein N) D XCC1099 conserved hypothetical protein K14160 imuA; protein ImuA D XCC1100 conserved hypothetical protein K14161 imuB; protein ImuB D XCC1101 dnaE2; DNA polymerase III alpha chain K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D XCC2735 ssb; single-stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein D XCC2903 DNA-damage-inducible protein d K14623 dinD; DNA-damage-inducible protein D D XCC1723 recX; RecX protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D XCC4139 rep; ATP-dependent DNA helicase K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D XCC3950 dinG; ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D XCC2930 yoaA; ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D XCC2317 lhr1; ATP-dependent DNA helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D XCC1289 lhr2; helicase-related protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D XCC2163 mutT; 7,8-dihydro-8-oxoguanine-triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D XCC0736 bifunctional DGTP-pyrophosphohydrolase/thiamine phosphate synthase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D XCC3858 dut; dUTPase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D XCC3986 nrdA; ribonucleoside-diphosphate reductase alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D XCC3985 nrdB; ribonucleoside-diphosphate reductase beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024