+D GENES KO
#
KEGG Orthology (KO) - Yersinia pestis Antiqua (biovar Antiqua)
%
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A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:ypa00010]
D YPA_2166 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D YPA_0026 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D YPA_3463 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D YPA_0070 D-fructose 1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D YPA_3452 hypothetical protein K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D YPA_0344 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D YPA_3788 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D YPA_3456 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D YPA_1514 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D YPA_0343 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D YPA_1041 phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D YPA_4046 phosphoglycerate mutase K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D YPA_3478 phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D YPA_2874 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D YPA_1447 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D YPA_1738 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D YPA_1753 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D YPA_2921 pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D YPA_2920 dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D YPA_2919 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPA_0105 putative pyridine nucleotide-disulphide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPA_1683 putative pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D YPA_0797 alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D YPA_1537 aldehyde-alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D YPA_4031 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D YPA_1043 aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D YPA_3515 hypothetical protein K20866 yihX; glucose-1-phosphatase [EC:3.1.3.10]
D YPA_2414 phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D YPA_1513 hypothetical protein K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15]
D YPA_3331 phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D YPA_3303 putative glycosyl hydrolase K01222 E3.2.1.86A; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D YPA_0969 6-phospho-beta-glucosidase. Glycosyl Hydrolase family 1 K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D YPA_2185 PTS system, glucose-specific IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D YPA_1917 PTS system, glucose-specific IIBC component K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199]
C 00020 Citrate cycle (TCA cycle) [PATH:ypa00020]
D YPA_0586 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D YPA_1580 aconitase K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D YPA_2917 aconitase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D YPA_1883 isocitrate dehydrogenase (NADP) K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D YPA_0591 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D YPA_0592 2-oxoglutarate dehydrogenase E2 component K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D YPA_2919 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPA_0105 putative pyridine nucleotide-disulphide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPA_0594 succinyl-CoA synthetase (ADP-forming) alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D YPA_0593 succinyl-CoA synthetase (ADP-forming) beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D YPA_0589 succinate dehydrogenase subunit A K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D YPA_0590 succinate dehydrogenase subunit B K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D YPA_0587 succinate dehydrogenase subunit C K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D YPA_0588 succinate dehydrogenase subunit D K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D YPA_3923 succinate dehydrogenase subunit A K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D YPA_3924 succinate dehydrogenase subunit B K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D YPA_3925 fumarate reductase hydrophobic protein K00246 frdC; succinate dehydrogenase subunit C
D YPA_3926 succinate dehydrogenase subunit D K00247 frdD; succinate dehydrogenase subunit D
D YPA_2809 fumarase K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D YPA_1624 fumarase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D YPA_0066 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D YPA_3331 phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D YPA_2921 pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D YPA_2920 dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D YPA_1683 putative pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
C 00030 Pentose phosphate pathway [PATH:ypa00030]
D YPA_0026 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D YPA_1449 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D YPA_1056 hypothetical protein K07404 pgl; 6-phosphogluconolactonase [EC:3.1.1.31]
D YPA_0836 6-phosphogluconate dehydrogenase (decarboxylating) K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D YPA_3314 ribulose-5-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D YPA_2830 transketolase subunit A K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D YPA_2831 transketolase subunit B K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D YPA_0340 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D YPA_4056 transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D YPA_1010 ribose-5-phosphate isomerase K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D YPA_0352 ribose-5-phosphate isomerase K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D YPA_2791 ribose-5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D YPA_3635 putative deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D YPA_3848 deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D YPA_0614 putative deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D YPA_3634 carbohydrate kinase K00852 rbsK; ribokinase [EC:2.7.1.15]
D YPA_0011 ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15]
D YPA_3845 phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D YPA_2414 phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D YPA_2966 PhnN protein K05774 phnN; ribose 1,5-bisphosphokinase [EC:2.7.4.23]
D YPA_1396 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D YPA_2025 6-phosphogluconate dehydratase K01690 edd; phosphogluconate dehydratase [EC:4.2.1.12]
D YPA_1450 2-keto-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D YPA_3006 putative D-isomer specific 2-hydroxyacid dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D YPA_3782 gluconate kinase K00851 idnK; gluconokinase [EC:2.7.1.12]
D YPA_2032 gluconate kinase K00851 idnK; gluconokinase [EC:2.7.1.12]
D YPA_3818 2-keto-3-deoxygluconate kinase K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]
D YPA_0344 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D YPA_3788 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D YPA_0070 D-fructose 1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D YPA_3452 hypothetical protein K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D YPA_3463 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C 00040 Pentose and glucuronate interconversions [PATH:ypa00040]
D YPA_3861 putative pectinesterase K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11]
D YPA_3822 periplasmic pectate lyase precursor K01728 pel; pectate lyase [EC:4.2.2.2]
D YPA_1798 exopolygalacturonate lyase K01731 pelW; pectate disaccharide-lyase [EC:4.2.2.9]
D YPA_1808 oligogalacturonate lyase K01730 ogl; oligogalacturonide lyase [EC:4.2.2.6]
D YPA_1792 hypothetical protein K26933 kdgF; unsaturated pyranuronate lyase [EC:4.2.99.25]
D YPA_1793 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase K01815 kduI; 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [EC:5.3.1.17]
D YPA_1794 2-deoxy-D-gluconate 3-dehydrogenase K00065 kduD; 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase [EC:1.1.1.127]
D YPA_0431 2-deoxy-D-gluconate 3-dehydrogenase K00065 kduD; 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase [EC:1.1.1.127]
D YPA_3210 D-glucuronate isomerase K01812 uxaC; glucuronate isomerase [EC:5.3.1.12]
D YPA_3208 tagaturonate reductase K00041 uxaB; tagaturonate reductase [EC:1.1.1.58]
D YPA_3207 D-altronate dehydratase K01685 uxaA; altronate hydrolase [EC:4.2.1.7]
D YPA_0999 D-mannonate dehydratase K01686 uxuA; mannonate dehydratase [EC:4.2.1.8]
D YPA_0998 fructuronate reductase K00040 uxuB; fructuronate reductase [EC:1.1.1.57]
D YPA_1532 putative nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D YPA_0835 UDP-glucose pyrophosphorylase regulatory subunit K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YPA_0834 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YPA_2810 putative L-xylulose kinase K00880 lyxK; L-xylulokinase [EC:2.7.1.53]
D YPA_2811 putative hexulose-6-phosphate isomerase K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22]
D YPA_2818 L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D YPA_1590 L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D YPA_3314 ribulose-5-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D YPA_1613 L-arabinose isomerase K01804 araA; L-arabinose isomerase [EC:5.3.1.4]
D YPA_1614 L-ribulokinase K00853 araB; L-ribulokinase [EC:2.7.1.16]
D YPA_1009 putative carbohydrate kinase K00854 xylB; xylulokinase [EC:2.7.1.17]
D YPA_4129 xylulokinase K00854 xylB; xylulokinase [EC:2.7.1.17]
D YPA_4128 D-xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
D YPA_3952 rhamnulokinase K00848 rhaB; rhamnulokinase [EC:2.7.1.5]
D YPA_3954 rhamnulose-1-phosphate aldolase K01629 rhaD; rhamnulose-1-phosphate aldolase [EC:4.1.2.19]
D YPA_1674 putative mannitol dehydrogenase K00007 dalD; D-arabinitol 4-dehydrogenase [EC:1.1.1.11]
D YPA_3789 hypothetical protein K09988 lyxA; D-lyxose ketol-isomerase [EC:5.3.1.15]
D YPA_1997 putative zinc-binding dehydrogenase K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14]
D YPA_3650 putative carbohydrate kinase K00875 rbtK; D-ribulokinase [EC:2.7.1.47]
C 00051 Fructose and mannose metabolism [PATH:ypa00051]
D YPA_2704 N-acetylglucosamine kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D YPA_1623 mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D YPA_2592 phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D YPA_1975 phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D YPA_2594 mannose-1-phosphate guanylyltransferase (GDP) K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D YPA_2596 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D YPA_2597 hypothetical protein K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D YPA_2595 GDP-fucose synthetase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D YPA_0863 putative racemase K18334 fucD; L-fuconate dehydratase [EC:4.2.1.68]
D YPA_0861 putative oxidoreductase K18335 E1.1.1.434; 2-dehydro-3-deoxy-L-fuconate 4-dehydrogenase [EC:1.1.1.434]
D YPA_3953 L-rhamnose isomerase K01813 rhaA; L-rhamnose isomerase [EC:5.3.1.14]
D YPA_3952 rhamnulokinase K00848 rhaB; rhamnulokinase [EC:2.7.1.5]
D YPA_3954 rhamnulose-1-phosphate aldolase K01629 rhaD; rhamnulose-1-phosphate aldolase [EC:4.1.2.19]
D YPA_3463 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D YPA_0070 D-fructose 1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D YPA_3452 hypothetical protein K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D YPA_3015 D-mannitol 1-phosphate 5-dehydrogenase K00009 mtlD; mannitol-1-phosphate 5-dehydrogenase [EC:1.1.1.17]
D YPA_1016 fructose-1-phosphate kinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D YPA_1997 putative zinc-binding dehydrogenase K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14]
D YPA_4128 D-xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
D YPA_1674 putative mannitol dehydrogenase K00007 dalD; D-arabinitol 4-dehydrogenase [EC:1.1.1.11]
D YPA_0344 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D YPA_3788 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D YPA_3456 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D YPA_2791 ribose-5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D YPA_1017 PTS system, fructose-specific IIBC component K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D YPA_1130 PTS system, mannose-specific IIAB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D YPA_1129 PTS system, mannose-specific IIC component K02795 manY; mannose PTS system EIIC component
D YPA_1128 PTS system, mannose-specific IID component K02796 manZ; mannose PTS system EIID component
D YPA_3014 PTS system, mannitol-specific IIABC component K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]
D YPA_2052 putative haloacid dehalogenase-like hydrolase K19270 hxpA; mannitol-1-/sugar-/sorbitol-6-phosphatase [EC:3.1.3.22 3.1.3.23 3.1.3.50]
D YPA_1790 hypothetical protein K24204 hxpB; mannitol-1-/sugar-/sorbitol-6-/2-deoxyglucose-6-phosphatase [EC:3.1.3.22 3.1.3.23 3.1.3.50 3.1.3.68]
C 00052 Galactose metabolism [PATH:ypa00052]
D YPA_1043 aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D YPA_1045 galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D YPA_1046 UDP-glucose-hexose-1-phosphate uridylyltransferase / UTP-hexose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D YPA_1047 UDP-galactose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D YPA_0835 UDP-glucose pyrophosphorylase regulatory subunit K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YPA_0834 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YPA_2414 phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D YPA_2166 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D YPA_1868 beta-galactosidase. Glycosyl Hydrolase family 2 K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D YPA_0418 puative beta-galactosidase K12308 bgaB; beta-galactosidase [EC:3.2.1.23]
D YPA_0878 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D YPA_3463 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D YPA_0426 tagatose-bisphosphate aldolase catalytic subunit K08302 gatY-kbaY; tagatose 1,6-diphosphate aldolase GatY/KbaY [EC:4.1.2.40]
D YPA_0438 tagatose-bisphosphate aldolase noncatalytic subunit K16371 gatZ-kbaZ; D-tagatose-1,6-bisphosphate aldolase subunit GatZ/KbaZ
D YPA_2693 putative maltodextrin glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D YPA_0422 putative glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D YPA_0433 putative PTS permease protein K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-]
D YPA_0436 putative PTS transport protein K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-]
D YPA_0435 putative PTS permease protein K02746 agaW; N-acetylgalactosamine PTS system EIIC component
D YPA_0434 putative PTS permease protein K02747 agaE; N-acetylgalactosamine PTS system EIID component
D YPA_0432 N-acetylglucosamine 6-phosphate deacetylase K02079 agaA; N-acetylgalactosamine-6-phosphate deacetylase [EC:3.5.1.25]
D YPA_0437 putative phosphosugar isomerase K02082 agaS; D-galactosamine 6-phosphate deaminase/isomerase [EC:3.5.99.-]
C 00053 Ascorbate and aldarate metabolism [PATH:ypa00053]
D YPA_1532 putative nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D YPA_2058 phosphotransferase enzyme II, A component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D YPA_2059 hypothetical protein K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D YPA_2060 putative membrane protein K03475 ulaA; ascorbate PTS system EIIC component
D YPA_2811 putative hexulose-6-phosphate isomerase K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22]
D YPA_2818 L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D YPA_1590 L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D YPA_2810 putative L-xylulose kinase K00880 lyxK; L-xylulokinase [EC:2.7.1.53]
C 00500 Starch and sucrose metabolism [PATH:ypa00500]
D YPA_2693 putative maltodextrin glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D YPA_0422 putative glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D YPA_0835 UDP-glucose pyrophosphorylase regulatory subunit K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YPA_0834 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YPA_3174 putative glycosyl hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D YPA_2548 putative beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D YPA_2409 PTS system, cellobiose-specific IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D YPA_2407 PTS system, cellobiose-specific IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D YPA_2408 PTS system, cellobiose-specific IIC component K02761 celB; cellobiose PTS system EIIC component
D YPA_3303 putative glycosyl hydrolase K01222 E3.2.1.86A; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D YPA_0969 6-phospho-beta-glucosidase. Glycosyl Hydrolase family 1 K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D YPA_2608 glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D YPA_3769 glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D YPA_3768 glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21]
D YPA_3771 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D YPA_3344 Glycogen/starch/alpha-glucan phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D YPA_3767 glycogen phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D YPA_3770 putative alpha-amylase K02438 glgX; glycogen debranching enzyme [EC:3.2.1.196]
D YPA_3005 alpha-amylase protein K01176 AMY; alpha-amylase [EC:3.2.1.1]
D YPA_3343 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25]
D YPA_2185 PTS system, glucose-specific IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D YPA_3710 PTS system, trehalose-specific IIBC component K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201]
D YPA_3709 putative trehalose-6-phosphate hydrolase K01226 treC; trehalose-6-phosphate hydrolase [EC:3.2.1.93]
D YPA_2414 phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D YPA_2166 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D YPA_0026 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D YPA_2704 N-acetylglucosamine kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:ypa00520]
D YPA_1907 beta-N-acetylhexosaminidase. Glycosyl Hydrolase family 3 K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D YPA_2464 beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D YPA_2185 PTS system, glucose-specific IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D YPA_2469 pts system, N-acetylglucosamine-specific IIABC component K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D YPA_1896 N-acetylglucosamine kinase K00884 NAGK; N-acetylglucosamine kinase [EC:2.7.1.59]
D YPA_2471 N-acetylglucosamine 6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
D YPA_2470 glucosamine-6-phosphate deaminase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6]
D YPA_2704 N-acetylglucosamine kinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D YPA_4163 glutamine--fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D YPA_0050 phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D YPA_4164 glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D YPA_2364 putative glucokinase protein K07106 murQ; N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126]
D YPA_1718 hypothetical protein K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170]
D YPA_3734 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D YPA_3429 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D YPA_2208 N-acetylmannosamine kinase K00885 nanK; N-acylmannosamine kinase [EC:2.7.1.60]
D YPA_2211 hypothetical protein K01788 nanE; N-acylglucosamine-6-phosphate 2-epimerase [EC:5.1.3.9]
D YPA_2212 N-acetylneuraminate lyase K01639 E4.1.3.3; N-acetylneuraminate lyase [EC:4.1.3.3]
D YPA_0154 UDP-N-Acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D YPA_0155 putative UDP-glucose/GDP-mannose dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
D YPA_1764 formyl transferase K10011 arnA; UDP-4-amino-4-deoxy-L-arabinose formyltransferase / UDP-glucuronic acid dehydrogenase (UDP-4-keto-hexauronic acid decarboxylating) [EC:2.1.2.13 1.1.1.305]
D YPA_1766 conserved hypothetical protein K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87]
D YPA_1765 glycosyl transferase K10012 arnC; undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [EC:2.4.2.53]
D YPA_1763 hypothetical protein K13014 arnD; undecaprenyl phosphate-alpha-L-ara4FN deformylase [EC:3.5.1.-]
D YPA_1917 PTS system, glucose-specific IIBC component K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199]
D YPA_2166 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D YPA_2414 phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D YPA_0835 UDP-glucose pyrophosphorylase regulatory subunit K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YPA_0834 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YPA_1532 putative nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D YPA_1045 galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D YPA_1046 UDP-glucose-hexose-1-phosphate uridylyltransferase / UTP-hexose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D YPA_1047 UDP-galactose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D YPA_1130 PTS system, mannose-specific IIAB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D YPA_1129 PTS system, mannose-specific IIC component K02795 manY; mannose PTS system EIIC component
D YPA_1128 PTS system, mannose-specific IID component K02796 manZ; mannose PTS system EIID component
D YPA_0026 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D YPA_1623 mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D YPA_2592 phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D YPA_1975 phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D YPA_2594 mannose-1-phosphate guanylyltransferase (GDP) K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D YPA_2596 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D YPA_2597 hypothetical protein K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D YPA_2595 GDP-fucose synthetase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D YPA_2608 glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D YPA_2606 CDP-glucose 4,6-dehydratase K01709 rfbG; CDP-glucose 4,6-dehydratase [EC:4.2.1.45]
D YPA_2605 putative CDP-4-keto-6-deoxy-D-glucose-3-dehydratase K12452 ascC; CDP-4-dehydro-6-deoxyglucose reductase, E1 [EC:1.17.1.1]
D YPA_2609 cdp-6-deoxy-delta-3,4-glucoseen reductase K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1]
D YPA_2604 paratose synthase K12453 rfbS; CDP-paratose synthetase [EC:1.1.1.342]
D YPA_3769 glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
C 00620 Pyruvate metabolism [PATH:ypa00620]
D YPA_4031 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D YPA_1683 putative pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D YPA_2921 pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D YPA_2920 dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D YPA_2919 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPA_0105 putative pyridine nucleotide-disulphide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPA_0674 formate acetyltransferase 1 K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D YPA_1537 aldehyde-alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D YPA_0797 alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D YPA_2055 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D YPA_2056 phosphotransacetylase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D YPA_1447 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D YPA_1738 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D YPA_0536 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D YPA_3672 biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D YPA_3671 biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D YPA_2076 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D YPA_0738 putative acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D YPA_0864 L-lactate dehydrogenase K00101 lldD; L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3]
D YPA_0647 pyruvate dehydrogenase (cytochrome) K00156 poxB; pyruvate dehydrogenase (quinone) [EC:1.2.5.1]
D YPA_1678 D-lactate dehydrogenase K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28]
D YPA_0888 D-lactate dehydrogenase K03777 dld; D-lactate dehydrogenase (quinone) [EC:1.1.5.12]
D YPA_1727 lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D YPA_0557 putative hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D YPA_0703 metallo-beta-lactamase superfamily protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D YPA_3006 putative D-isomer specific 2-hydroxyacid dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D YPA_0806 NAD-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D YPA_2222 NADP-dependent malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D YPA_0066 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D YPA_2809 fumarase K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D YPA_1624 fumarase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D YPA_3923 succinate dehydrogenase subunit A K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D YPA_3924 succinate dehydrogenase subunit B K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D YPA_3925 fumarate reductase hydrophobic protein K00246 frdC; succinate dehydrogenase subunit C
D YPA_3926 succinate dehydrogenase subunit D K00247 frdD; succinate dehydrogenase subunit D
D YPA_0095 Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D YPA_3331 phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D YPA_1753 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D YPA_0017 malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9]
D YPA_3564 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:ypa00630]
D YPA_0018 isocitrate lyase K01637 E4.1.3.1; isocitrate lyase [EC:4.1.3.1]
D YPA_4031 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D YPA_0017 malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9]
D YPA_0066 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D YPA_0586 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D YPA_1580 aconitase K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D YPA_2917 aconitase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D YPA_0921 catalase K03781 katE; catalase [EC:1.11.1.6]
D YPA_3006 putative D-isomer specific 2-hydroxyacid dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D YPA_3313 phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D YPA_3517 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D YPA_2347 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D YPA_0362 glycine dehydrogenase (decarboxylating) beta subunit / glycine dehydrogenase (decarboxylating) alpha subunit K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D YPA_0360 aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D YPA_2919 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPA_0105 putative pyridine nucleotide-disulphide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPA_0361 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D YPA_3661 putative 2-hydroxy-3-oxopropionate reductase K00042 garR; 2-hydroxy-3-oxopropionate reductase [EC:1.1.1.60]
D YPA_3808 putative glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D YPA_1991 tartrate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83]
D YPA_1450 2-keto-3-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D YPA_3026 Twin-arginine translocation pathway signal K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D YPA_3027 formate dehydrogenase alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D YPA_3028 formate dehydrogenase beta subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D YPA_3029 formate dehydrogenase gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma
D YPA_1529 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D YPA_1353 putative N-formylglutamate amidohydrolase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68]
C 00640 Propanoate metabolism [PATH:ypa00640]
D YPA_4031 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D YPA_2055 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D YPA_2056 phosphotransacetylase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D YPA_2919 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPA_0105 putative pyridine nucleotide-disulphide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPA_0674 formate acetyltransferase 1 K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D YPA_3676 zinc-binding dehydrogenase K19745 acuI; acrylyl-CoA reductase (NADPH) [EC:1.3.1.-]
D YPA_3436 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D YPA_2097 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D YPA_0536 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D YPA_3672 biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D YPA_3671 biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D YPA_2076 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D YPA_2283 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D YPA_0593 succinyl-CoA synthetase (ADP-forming) beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D YPA_0594 succinyl-CoA synthetase (ADP-forming) alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D YPA_2524 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D YPA_2917 aconitase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D YPA_0733 methylglyoxal synthase K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3]
D YPA_3114 putative iron-containing alcohol dehydrogenase K08325 yqhD; NADP-dependent alcohol dehydrogenase [EC:1.1.-.-]
C 00650 Butanoate metabolism [PATH:ypa00650]
D YPA_3436 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D YPA_2097 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D YPA_4149 hypothetical protein K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D YPA_1537 aldehyde-alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D YPA_1991 tartrate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83]
D YPA_0589 succinate dehydrogenase subunit A K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D YPA_0590 succinate dehydrogenase subunit B K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D YPA_0587 succinate dehydrogenase subunit C K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D YPA_0588 succinate dehydrogenase subunit D K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D YPA_3923 succinate dehydrogenase subunit A K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D YPA_3924 succinate dehydrogenase subunit B K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D YPA_3925 fumarate reductase hydrophobic protein K00246 frdC; succinate dehydrogenase subunit C
D YPA_3926 succinate dehydrogenase subunit D K00247 frdD; succinate dehydrogenase subunit D
D YPA_2283 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D YPA_1008 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D YPA_3700 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D YPA_0674 formate acetyltransferase 1 K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D YPA_1683 putative pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D YPA_0750 hydroxymethylglutaryl-CoA synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10]
D YPA_3560 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YPA_1642 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YPA_0121 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YPA_3559 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D YPA_1643 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D YPA_0122 acetolactate synthase, small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:ypa00660]
D YPA_3560 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YPA_1642 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YPA_0121 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YPA_3559 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D YPA_1643 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D YPA_0122 acetolactate synthase, small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D YPA_1304 putative 4-hydroxybutyrate coenzyme A transferase K18288 ict-Y; itaconate CoA-transferase [EC:2.8.3.-]
D YPA_0593 succinyl-CoA synthetase (ADP-forming) beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D YPA_0594 succinyl-CoA synthetase (ADP-forming) alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D YPA_1305 putative transcription regulatory protein K18290 ich-Y; itaconyl-CoA hydratase [EC:4.2.1.56]
D YPA_1306 putative citrate lyase beta chain K18292 E4.1.3.25; (S)-citramalyl-CoA lyase [EC:4.1.3.25]
D YPA_3459 transferase K10218 ligK; 4-hydroxy-4-methyl-2-oxoglutarate aldolase [EC:4.1.3.17]
D YPA_3566 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D YPA_3567 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D YPA_3565 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:ypa00562]
D YPA_2340 putative inositol monophosphatase family protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D YPA_1875 histidine acid phosphatase K01093 appA; 4-phytase / acid phosphatase [EC:3.1.3.26 3.1.3.2]
D YPA_2521 putative myo-inositol 2-dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D YPA_2522 hypothetical protein K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D YPA_2514 hypothetical protein K03335 iolE; inosose dehydratase [EC:4.2.1.44]
D YPA_2523 putative thiamine pyrophosphate-dependent protein K03336 iolD; 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) [EC:3.7.1.22]
D YPA_2513 hypothetical protein K03337 iolB; 5-deoxy-glucuronate isomerase [EC:5.3.1.30]
D YPA_2516 putative carbohydrate kinase K03338 iolC; 5-dehydro-2-deoxygluconokinase [EC:2.7.1.92]
D YPA_2524 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D YPA_3456 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:ypa00190]
D YPA_2047 NADH dehydrogenase I chain A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D YPA_2046 NADH dehydrogenase I chain B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D YPA_2045 NADH dehydrogenase I chain C/D K13378 nuoCD; NADH-quinone oxidoreductase subunit C/D [EC:7.1.1.2]
D YPA_2044 NADH dehydrogenase I chain E K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D YPA_2043 NADH dehydrogenase I chain F K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D YPA_2042 NADH dehydrogenase I chain G K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D YPA_2041 NADH dehydrogenase I chain H K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D YPA_2040 NADH Dehydrogenase I chain I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D YPA_2039 NADH dehydrogenase I chain J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D YPA_2038 NADH dehydrogenase i chain k K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D YPA_2037 NADH dehydrogenase I chain L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D YPA_2036 NADH dehydrogenase I chain M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D YPA_2035 NADH dehydrogenase I chain N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D YPA_1905 NADH dehydrogenase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D YPA_0589 succinate dehydrogenase subunit A K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D YPA_0590 succinate dehydrogenase subunit B K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D YPA_0587 succinate dehydrogenase subunit C K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D YPA_0588 succinate dehydrogenase subunit D K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D YPA_3923 succinate dehydrogenase subunit A K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D YPA_3924 succinate dehydrogenase subunit B K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D YPA_3925 fumarate reductase hydrophobic protein K00246 frdC; succinate dehydrogenase subunit C
D YPA_3926 succinate dehydrogenase subunit D K00247 frdD; succinate dehydrogenase subunit D
D YPA_2662 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D YPA_2661 cytochrome O ubiquinol oxidase subunit CyoD K02300 cyoD; cytochrome o ubiquinol oxidase subunit IV
D YPA_2660 cytochrome O ubiquinol oxidase subunit III K02299 cyoC; cytochrome o ubiquinol oxidase subunit III
D YPA_2659 cytochrome O ubiquinol oxidase subunit I K02298 cyoB; cytochrome o ubiquinol oxidase subunit I [EC:7.1.1.3]
D YPA_2658 cytochrome O ubiquinol oxidase subunit II K02297 cyoA; cytochrome o ubiquinol oxidase subunit II [EC:7.1.1.3]
D YPA_0595 cytochrome D ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D YPA_0596 cytochrome D ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D YPA_4168 ATP synthase alpha subunit protein K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D YPA_4166 ATP synthase beta subunit protein K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D YPA_4167 ATP synthase gamma subunit protein K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D YPA_4169 ATP synthase delta subunit protein K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D YPA_4165 ATP synthase epsilon subunit protein K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D YPA_4172 ATP synthase subunit B protein K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D YPA_4170 ATP synthase subunit B protein K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D YPA_4171 ATP synthase subunit C protein K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D YPA_0071 inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D YPA_2273 polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation in photosynthetic organisms
C 00720 Carbon fixation pathways in prokaryotes
C 00680 Methane metabolism [PATH:ypa00680]
D YPA_0797 alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D YPA_0796 putative esterase K01070 frmB; S-formylglutathione hydrolase [EC:3.1.2.12]
D YPA_3026 Twin-arginine translocation pathway signal K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D YPA_3027 formate dehydrogenase alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D YPA_3028 formate dehydrogenase beta subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D YPA_3029 formate dehydrogenase gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma
D YPA_3938 formate dehydrogenase alpha subunit K22015 fdhF; formate dehydrogenase (hydrogenase) [EC:1.17.98.4 1.17.98.-]
D YPA_2347 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D YPA_2874 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D YPA_0095 Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D YPA_0066 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D YPA_0344 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D YPA_3788 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D YPA_0070 D-fructose 1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D YPA_3452 hypothetical protein K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D YPA_3463 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D YPA_1958 hypothetical protein K10713 fae; 5,6,7,8-tetrahydromethanopterin hydro-lyase [EC:4.2.1.147]
D YPA_2055 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D YPA_2056 phosphotransacetylase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D YPA_4031 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D YPA_1753 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D YPA_1041 phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D YPA_4046 phosphoglycerate mutase K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D YPA_3478 phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D YPA_1004 putative D-isomer specific 2-hydroxyacid dehydrogenase family protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D YPA_0353 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D YPA_0680 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D YPA_3842 phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 00910 Nitrogen metabolism [PATH:ypa00910]
D YPA_2229 periplasmic nitrate reductase subunit NapA apoprotein K02567 napA; nitrate reductase (cytochrome) [EC:1.9.6.1]
D YPA_2228 periplasmic nitrate reductase subunit NapB K02568 napB; nitrate reductase (cytochrome), electron transfer subunit
D YPA_3308 assimilatory nitrite reductase (NAD(P)H) large subunit precursor K00362 nirB; nitrite reductase (NADH) large subunit [EC:1.7.1.15]
D YPA_3309 assimilatory nitrite reductase (NAD(P)H) small subunit K00363 nirD; nitrite reductase (NADH) small subunit [EC:1.7.1.15]
D YPA_0649 Hybrid cluster protein K05601 hcp; hydroxylamine reductase [EC:1.7.99.1]
D YPA_3799 glutamate dehydrogenase (NADP) K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D YPA_3517 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D YPA_3746 glutamate synthase (NADPH) large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D YPA_3745 glutamate synthase (NADPH) small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D YPA_2909 putative carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
D YPA_0450 putative carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:ypa00920]
D YPA_2204 thiosulfate-binding protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein
D YPA_3462 exported sulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D YPA_2203 sulfate transport system permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D YPA_2202 sulfate transport system permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D YPA_2201 sulfate transport ATP-binding protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D YPA_3290 putative taurine-binding periplasmic protein precursor K15551 tauA; taurine transport system substrate-binding protein
D YPA_3288 putative taurine transport system permease protein K15552 tauC; taurine transport system permease protein
D YPA_3289 putative taurine transport ATP-binding protein K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7]
D YPA_3287 putative taurine dioxygenase K03119 tauD; taurine dioxygenase [EC:1.14.11.17]
D YPA_3637 putative aliphatic sulfonates binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D YPA_3639 putative aliphatic sulfonates transport permease protein K15554 ssuC; sulfonate transport system permease protein
D YPA_3640 putative aliphatic sulfonates transport ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D YPA_3638 alkanesulfonate monooxygenase K04091 ssuD; alkanesulfonate monooxygenase [EC:1.14.14.5 1.14.14.34]
D YPA_3636 putative NAD(P)H-dependent FMN reductase K00299 ssuE; FMN reductase [EC:1.5.1.38]
D YPA_2778 sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D YPA_2777 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D YPA_2779 adenylylsulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]
D YPA_0079 inositol monophosphatase family protein K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D YPA_2868 phosphoadenylylsulfate reductase (thioredoxin) K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]
D YPA_2870 sulfite reductase (NADPH) alpha subunit K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]
D YPA_2869 sulfite reductase (NADPH) beta subunit K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2]
D YPA_0906 putative sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D YPA_3347 hypothetical protein K02439 glpE; thiosulfate sulfurtransferase [EC:2.8.1.1]
D YPA_3473 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D YPA_2182 cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D YPA_2642 putative Pyridoxal-phosphate dependent protein K01738 cysK; cysteine synthase [EC:2.5.1.47]
D YPA_4106 pyridoxal-phosphate dependent protein K01738 cysK; cysteine synthase [EC:2.5.1.47]
D YPA_0015 homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D YPA_0263 hypothetical protein K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D YPA_2819 anaerobic dimethyl sulfoxide reductase chain A K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3]
D YPA_2154 putative dimethyl sulfoxide reductase chain A protein K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3]
D YPA_2820 anaerobic dimethyl sulfoxide reductase chain B K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B
D YPA_2155 putative dimethyl sulfoxide reductase chain B protein K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B
D YPA_2821 anaerobic dimethyl sulfoxide reductase chain C K07308 dmsC; anaerobic dimethyl sulfoxide reductase subunit C
D YPA_2156 putative dimethyl sulfoxide reductase chain C protein K07308 dmsC; anaerobic dimethyl sulfoxide reductase subunit C
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:ypa00061]
D YPA_0536 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D YPA_3672 biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D YPA_3671 biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D YPA_2076 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D YPA_1925 acyl carrier protein K02078 acpP; acyl carrier protein
D YPA_0756 putative acyl transferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D YPA_1927 [Acyl-carrier-protein] S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D YPA_1928 3-oxoacyl-[acyl-carrier-protein] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D YPA_1359 hypothetical protein K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D YPA_1360 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D YPA_0748 putative beta-ketoacyl-(acyl-carrier-protein) synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D YPA_2086 3-oxoacyl-[acyl-carrier-protein] synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D YPA_1924 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D YPA_0719 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D YPA_0749 putative beta-ketoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D YPA_1926 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D YPA_0723 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D YPA_0747 putative (3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydrase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D YPA_0531 3-hydroxyacyl-[acyl-carrier-protein] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D YPA_4149 hypothetical protein K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D YPA_3561 putative AMP-binding enzyme-family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D YPA_1457 long-chain-fatty-acid-CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:ypa00071]
D YPA_3437 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D YPA_2098 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D YPA_3436 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D YPA_2097 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D YPA_2735 acyl-CoA dehydrogenase K06445 fadE; acyl-CoA dehydrogenase [EC:1.3.99.-]
D YPA_3561 putative AMP-binding enzyme-family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D YPA_1457 long-chain-fatty-acid-CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D YPA_0476 Aas bifunctional protein K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20]
D YPA_0797 alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D YPA_1537 aldehyde-alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:ypa00561]
D YPA_3808 putative glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D YPA_2794 putative dihydroxyacetone kinase K05878 dhaK; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaK [EC:2.7.1.121]
D YPA_2795 hypothetical protein K05879 dhaL; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaL [EC:2.7.1.121]
D YPA_3451 hypothetical protein K00864 glpK; glycerol kinase [EC:2.7.1.30]
D YPA_2832 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D YPA_3972 glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D YPA_1929 phosphate:acyl-[acyl carrier protein] acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D YPA_3143 acyl-phosphate glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D YPA_3119 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D YPA_3971 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D YPA_0878 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
C 00564 Glycerophospholipid metabolism [PATH:ypa00564]
D YPA_3474 glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D YPA_0196 anaerobic glycerol-3-phosphate dehydrogenase subunit A K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D YPA_3766 aerobic glycerol-3-phosphate dehydrogenase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D YPA_0197 putative anaerobic glycerol-3-phosphate dehydrogenase subunit B K00112 glpB; glycerol-3-phosphate dehydrogenase subunit B [EC:1.1.5.3]
D YPA_0198 anaerobic glycerol-3-phosphate dehydrogenase subunit C K00113 glpC; glycerol-3-phosphate dehydrogenase subunit C
D YPA_3972 glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D YPA_3143 acyl-phosphate glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D YPA_3119 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D YPA_3971 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D YPA_0188 phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
D YPA_0192 putative lysophospholipase K01048 pldB; lysophospholipase [EC:3.1.1.5]
D YPA_0195 glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D YPA_0232 glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D YPA_0476 Aas bifunctional protein K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20]
D YPA_3814 CDP-diacylglycerol pyrophosphatase K01521 cdh; CDP-diacylglycerol pyrophosphatase [EC:3.6.1.26]
D YPA_2561 putative phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D YPA_0526 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D YPA_2764 CDP-diacylglycerol--serine O-phosphatidyltransferase K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D YPA_3920 phosphatidylserine decarboxylase proenzyme K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D YPA_1245 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D YPA_2673 phosphatidylglycerophosphatase K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27]
D YPA_1583 phosphatidylglycerophosphatase K01096 pgpB; phosphatidylglycerophosphatase B [EC:3.1.3.27 3.6.1.75 3.1.3.4 3.6.1.27]
D YPA_2363 putative membrane protein K18697 pgpC; phosphatidylglycerophosphatase C [EC:3.1.3.27]
D YPA_1546 cardiolipin synthetase 2 K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
C 00565 Ether lipid metabolism [PATH:ypa00565]
D YPA_0188 phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00600 Sphingolipid metabolism [PATH:ypa00600]
D YPA_1365 putative glycosyl transferase K00720 UGCG; ceramide glucosyltransferase [EC:2.4.1.80]
D YPA_1868 beta-galactosidase. Glycosyl Hydrolase family 2 K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D YPA_0878 alpha-galactosidase K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D YPA_2464 beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
C 00590 Arachidonic acid metabolism
D YPA_0188 phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00591 Linoleic acid metabolism
D YPA_0188 phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00592 alpha-Linolenic acid metabolism [PATH:ypa00592]
D YPA_0188 phospholipase A K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
D YPA_3437 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D YPA_2098 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01040 Biosynthesis of unsaturated fatty acids [PATH:ypa01040]
D YPA_2575 putative acyl-CoA thioesterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D YPA_2636 acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
D YPA_1554 putative acyl-CoA thioester hydrolase K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:ypa00230]
D YPA_3128 putative MutT-family protein K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D YPA_3326 putative hydrolase K08312 nudE; ADP compounds hydrolase [EC:3.6.1.-]
D YPA_3845 phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D YPA_2414 phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D YPA_1396 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D YPA_2072 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D YPA_3602 phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D YPA_2266 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D YPA_1147 phosphoribosylglycinamide formyltransferase 2 K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21]
D YPA_2360 phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
D YPA_2265 phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D YPA_2572 phosphoribosylaminoimidazole carboxylase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D YPA_2571 phosphoribosylaminoimidazole carboxylase catalytic subunit PurE K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D YPA_2250 phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D YPA_1888 Adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D YPA_3601 IMP cyclohydrolase / phosphoribosylaminoimidazolecarboxamide formyltransferase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D YPA_4107 putative phosphoribosyl transferase protein K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D YPA_2617 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D YPA_2586 5'-nucleotidase/2' 3'-cyclic phosphodiesterase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D YPA_2587 protein UshA precursor: UDP-sugar hydrolase (UDP-sugar diphosphatase) (UDP-sugar pyrophosphatase); 5'-nucleotidase (5'-NT) K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D YPA_2785 3'-nucleotidase / 5'-nucleotidase / exopolyphosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D YPA_2473 putative N-acetylglucosamine metabolism protein K02566 nagD; 5'-nucleotidase [EC:3.1.3.5]
D YPA_3328 hypothetical protein K20881 yrfG; GMP/IMP 5'-nucleotidase [EC:3.1.3.-]
D YPA_2590 inosine-guanosine kinase K00892 gsk; inosine kinase [EC:2.7.1.73]
D YPA_1079 xanthosine phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D YPA_3844 purine-nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D YPA_2706 hypothetical protein K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2]
D YPA_2767 hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D YPA_2910 hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D YPA_2312 inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D YPA_2323 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D YPA_4045 hypothetical protein K01529 yjjX; inosine/xanthosine triphosphatase [EC:3.6.1.73]
D YPA_0320 hypothetical protein K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D YPA_2717 xanthine-guanine phosphoribosyltransferase K00769 gpt; xanthine phosphoribosyltransferase [EC:2.4.2.22]
D YPA_2311 GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D YPA_2930 GMP reductase K00364 guaC; GMP reductase [EC:1.7.1.7]
D YPA_3502 guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D YPA_0928 ribonucleoside-diphosphate reductase class Ia alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D YPA_2377 ribonucleoside-diphosphate reductase class Ib alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D YPA_0927 ribonucleoside-diphosphate reductase class Ia beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D YPA_2376 ribonucleoside-diphosphate reductase class Ib beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D YPA_2956 ribonucleoside-triphosphate reductase class III catalytic subunit / ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D YPA_2882 deoxyguanosinetriphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1]
D YPA_2050 hypothetical protein K08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89]
D YPA_3504 guanosine-3',5'-bisbis(diphosphate) 3'-pyrophosphydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D YPA_0147 Guanosine-5'-triphosphate,3'-diphosphate diphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D YPA_2274 putative exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D YPA_0148 hypothetical protein K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D YPA_2877 GTP pyrophosphokinase K00951 relA; GTP pyrophosphokinase [EC:2.7.6.5]
D YPA_0174 adenylate cyclase K05851 cyaA; adenylate cyclase, class 1 [EC:4.6.1.1]
D YPA_0889 adenylate cyclase 2 K05873 cyaB; adenylate cyclase, class 2 [EC:4.6.1.1]
D YPA_2427 putative 3',5'-cyclic-nucleotide phosphodiesterase K01120 cpdP; 3',5'-cyclic-nucleotide phosphodiesterase [EC:3.1.4.17]
D YPA_3906 Adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D YPA_1637 putative AMP nucleosidase K01241 amn; AMP nucleosidase [EC:3.2.2.4]
D YPA_0507 hypothetical protein K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-]
D YPA_0080 2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D YPA_2611 Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D YPA_2876 hypothetical protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D YPA_3125 Icc-like protein K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]
D YPA_3126 regulator of lacZ K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]
D YPA_4084 bis(5'nucleosyl)-tetraphosphatase K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41]
D YPA_2779 adenylylsulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]
D YPA_2778 sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D YPA_2777 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D YPA_2372 hypothetical protein K16842 hpxB; allantoinase [EC:3.5.2.5]
D YPA_2740 putative amino acid hydrolase K02083 allC; allantoate deiminase [EC:3.5.3.9]
D YPA_2744 hypothetical protein K00839 pucG; (S)-ureidoglycine---glyoxylate transaminase [EC:2.6.1.112]
D YPA_2394 urease alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D YPA_2393 urease beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5]
D YPA_2392 urease gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5]
D YPA_2752 amidase K22601 hpxY; oxamate carbamoyltransferase [EC:2.1.3.5]
C 00240 Pyrimidine metabolism [PATH:ypa00240]
D YPA_4075 carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D YPA_4074 carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D YPA_3715 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D YPA_3714 aspartate carbamoyltransferase regulatory chain K00610 pyrI; aspartate carbamoyltransferase regulatory subunit
D YPA_1940 dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D YPA_0710 dihydroorotate oxidase A K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D YPA_3497 orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D YPA_1587 orotidine-5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D YPA_0522 uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D YPA_2323 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D YPA_2876 hypothetical protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D YPA_3681 putative inhibitor of septum formation K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D YPA_3202 hypothetical protein K07043 upp; UTP pyrophosphatase [EC:3.6.1.-]
D YPA_2875 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D YPA_0682 cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D YPA_1524 putative pyrophosphohydrolase K08320 nudG; (d)CTP diphosphatase [EC:3.6.1.65]
D YPA_0818 uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48]
D YPA_2586 5'-nucleotidase/2' 3'-cyclic phosphodiesterase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D YPA_2587 protein UshA precursor: UDP-sugar hydrolase (UDP-sugar diphosphatase) (UDP-sugar pyrophosphatase); 5'-nucleotidase (5'-NT) K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D YPA_2785 3'-nucleotidase / 5'-nucleotidase / exopolyphosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D YPA_2473 putative N-acetylglucosamine metabolism protein K02566 nagD; 5'-nucleotidase [EC:3.1.3.5]
D YPA_1644 haloacid dehalogenase-like hydrolase family protein K08723 yjjG; pyrimidine 5'-nucleotidase [EC:3.1.3.-]
D YPA_0238 uridine phosphorylase K00757 udp; uridine phosphorylase [EC:2.4.2.3]
D YPA_2706 hypothetical protein K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2]
D YPA_2264 uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D YPA_0080 2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D YPA_0507 hypothetical protein K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-]
D YPA_0807 cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D YPA_3307 cytosine deaminase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21]
D YPA_2956 ribonucleoside-triphosphate reductase class III catalytic subunit / ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D YPA_0819 dCTP deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D YPA_0928 ribonucleoside-diphosphate reductase class Ia alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D YPA_2377 ribonucleoside-diphosphate reductase class Ib alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D YPA_0927 ribonucleoside-diphosphate reductase class Ia beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D YPA_2376 ribonucleoside-diphosphate reductase class Ib beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D YPA_2050 hypothetical protein K08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89]
D YPA_1920 thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D YPA_3495 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D YPA_3846 Thymidine phosphorylase K00758 deoA; thymidine phosphorylase [EC:2.4.2.4]
D YPA_3847 hypothetical protein K00758 deoA; thymidine phosphorylase [EC:2.4.2.4]
D YPA_1534 thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21]
D YPA_0485 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:ypa00250]
D YPA_0704 L-aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D YPA_2444 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D YPA_1518 asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D YPA_0677 asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D YPA_0003 aspartate-ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1]
D YPA_2474 asparagine synthase (glutamine-hydrolysing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D YPA_2049 aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D YPA_3934 aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1]
D YPA_0866 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D YPA_0865 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D YPA_0099 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D YPA_3906 Adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D YPA_1888 Adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D YPA_3715 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D YPA_3714 aspartate carbamoyltransferase regulatory chain K00610 pyrI; aspartate carbamoyltransferase regulatory subunit
D YPA_2283 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D YPA_1008 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D YPA_3700 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D YPA_3746 glutamate synthase (NADPH) large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D YPA_3745 glutamate synthase (NADPH) small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D YPA_3799 glutamate dehydrogenase (NADP) K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D YPA_1229 L-proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D YPA_3517 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D YPA_4075 carbamoyl-phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D YPA_4074 carbamoyl-phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D YPA_0315 L-glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D YPA_1322 L-glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D YPA_4163 glutamine--fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D YPA_2072 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:ypa00260]
D YPA_0025 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D YPA_4051 aspartate kinase / homoserine dehydrogenase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D YPA_0265 homoserine dehydrogenase / aspartate kinase K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D YPA_3777 aspartate semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D YPA_4052 homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D YPA_4053 L-threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D YPA_0645 L-threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48]
D YPA_2347 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D YPA_3006 putative D-isomer specific 2-hydroxyacid dehydrogenase K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D YPA_3808 putative glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D YPA_1041 phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D YPA_4046 phosphoglycerate mutase K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D YPA_3478 phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D YPA_1004 putative D-isomer specific 2-hydroxyacid dehydrogenase family protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D YPA_0353 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D YPA_0680 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D YPA_3842 phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D YPA_3483 2-amino-3-ketobutyrate coenzyme A ligase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D YPA_3482 L-threonine 3-dehydrogenase K00060 tdh; threonine 3-dehydrogenase [EC:1.1.1.103]
D YPA_0362 glycine dehydrogenase (decarboxylating) beta subunit / glycine dehydrogenase (decarboxylating) alpha subunit K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D YPA_0360 aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D YPA_2919 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPA_0105 putative pyridine nucleotide-disulphide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPA_0361 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D YPA_2764 CDP-diacylglycerol--serine O-phosphatidyltransferase K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D YPA_1073 choline dehydrogenase K00108 betA; choline dehydrogenase [EC:1.1.99.1]
D YPA_1074 betaine aldehyde dehydrogenase K00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8]
D YPA_1143 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D YPA_2996 L-threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D YPA_0125 L-threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D YPA_2085 putative aspartate/glutamate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10]
D YPA_1835 putative alanine racemase K25317 alr; amino-acid racemase [EC:5.1.1.10]
D YPA_1563 tryptophan synthase, alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D YPA_1564 tryptophan synthase, beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D YPA_0823 putative decarboxylase K13745 ddc; L-2,4-diaminobutyrate decarboxylase [EC:4.1.1.86]
C 00270 Cysteine and methionine metabolism [PATH:ypa00270]
D YPA_3473 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D YPA_2182 cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D YPA_2642 putative Pyridoxal-phosphate dependent protein K01738 cysK; cysteine synthase [EC:2.5.1.47]
D YPA_4106 pyridoxal-phosphate dependent protein K01738 cysK; cysteine synthase [EC:2.5.1.47]
D YPA_3111 cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D YPA_4004 cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D YPA_2195 putative aminotransferase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D YPA_0021 methionine synthase (B12-dependent) K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D YPA_0236 methionine synthase (B12-independent) K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D YPA_0335 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D YPA_2914 adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D YPA_2913 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D YPA_1954 N-acylhomoserine lactone synthase YpeI K22956 expI; acyl homoserine lactone synthase [EC:2.3.1.184]
D YPA_0280 N-acylhomoserine lactone synthase YspI K22956 expI; acyl homoserine lactone synthase [EC:2.3.1.184]
D YPA_2883 methylthioadenosine nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D YPA_2767 hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D YPA_3963 aromatic amino acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D YPA_1818 hypothetical protein K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14]
D YPA_2844 autoinducer-2 production protein K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D YPA_0025 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D YPA_4051 aspartate kinase / homoserine dehydrogenase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D YPA_0265 homoserine dehydrogenase / aspartate kinase K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D YPA_3777 aspartate semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D YPA_0015 homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D YPA_0263 hypothetical protein K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D YPA_0123 branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D YPA_2843 glutamate-cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D YPA_0330 glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D YPA_0704 L-aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D YPA_0906 putative sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D YPA_2085 putative aspartate/glutamate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10]
D YPA_1835 putative alanine racemase K25317 alr; amino-acid racemase [EC:5.1.1.10]
D YPA_1221 D-cysteine desulfhydrase K05396 dcyD; D-cysteine desulfhydrase [EC:4.4.1.15]
D YPA_0066 malate dehydrogenase (NAD) K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D YPA_1143 L-serine ammonia-lyase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D YPA_2200 cysteine synthase B K12339 cysM; S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent) [EC:2.5.1.144]
D YPA_1004 putative D-isomer specific 2-hydroxyacid dehydrogenase family protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D YPA_0353 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D YPA_0680 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:ypa00280]
D YPA_0123 branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D YPA_2919 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPA_0105 putative pyridine nucleotide-disulphide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPA_3436 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D YPA_2097 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D YPA_3437 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D YPA_2098 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D YPA_2524 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D YPA_0750 hydroxymethylglutaryl-CoA synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:ypa00290]
D YPA_2996 L-threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D YPA_0125 L-threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D YPA_3566 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D YPA_3567 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D YPA_3565 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D YPA_3560 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YPA_1642 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YPA_0121 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YPA_3559 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D YPA_1643 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D YPA_0122 acetolactate synthase, small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D YPA_0132 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D YPA_0124 dihydroxyacid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D YPA_0123 branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D YPA_3003 valine-pyruvate aminotransferase K00835 avtA; valine--pyruvate aminotransferase [EC:2.6.1.66]
D YPA_2049 aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D YPA_3564 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:ypa00300]
D YPA_0025 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D YPA_4051 aspartate kinase / homoserine dehydrogenase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D YPA_0265 homoserine dehydrogenase / aspartate kinase K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D YPA_3777 aspartate semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D YPA_2253 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D YPA_4073 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D YPA_0515 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D YPA_3299 aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D YPA_2244 succinyldiaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D YPA_0177 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D YPA_0473 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D YPA_1318 putative aminotransferase K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-]
D YPA_3551 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D YPA_3550 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:ypa00310]
D YPA_0592 2-oxoglutarate dehydrogenase E2 component K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D YPA_2919 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPA_0105 putative pyridine nucleotide-disulphide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPA_3436 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D YPA_2097 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D YPA_2085 putative aspartate/glutamate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10]
D YPA_1835 putative alanine racemase K25317 alr; amino-acid racemase [EC:5.1.1.10]
D YPA_1008 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D YPA_3700 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D YPA_0688 hypothetical protein K25986 ydcJ; 2-oxoadipate dioxygenase/decarboxylase [EC:1.13.11.93]
D YPA_1751 hypothetical protein K26063 ydiJ; (R)-2-hydroxyglutarate dehydrogenase [EC:1.1.-.-]
C 00220 Arginine biosynthesis [PATH:ypa00220]
D YPA_2947 ornithine carbamoyltransferase 1 K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D YPA_2948 ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D YPA_0866 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D YPA_0865 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D YPA_0099 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D YPA_2394 urease alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D YPA_2393 urease beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5]
D YPA_2392 urease gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5]
D YPA_0315 L-glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D YPA_1322 L-glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D YPA_3517 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D YPA_3799 glutamate dehydrogenase (NADP) K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D YPA_0704 L-aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D YPA_2049 aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D YPA_0494 N-acetylglutamate synthase K14682 argAB; amino-acid N-acetyltransferase [EC:2.3.1.1]
D YPA_0098 N-acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D YPA_0097 N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D YPA_3299 aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D YPA_0096 acetylornithine deacetylase / acetylornithine deacetylase ArgE. Metallo peptidase. MEROPS family M20A K01438 argE; acetylornithine deacetylase [EC:3.5.1.16]
C 00330 Arginine and proline metabolism [PATH:ypa00330]
D YPA_3307 cytosine deaminase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21]
D YPA_0913 arginine decarboxylase K01584 adiA; arginine decarboxylase [EC:4.1.1.19]
D YPA_0336 arginine decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19]
D YPA_0326 hypothetical protein K10536 aguA; agmatine deiminase [EC:3.5.3.12]
D YPA_0327 putative carbon-nitrogen hydrolase K12251 aguB; N-carbamoylputrescine amidase [EC:3.5.1.53]
D YPA_0304 ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
D YPA_2913 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D YPA_2914 adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D YPA_2267 spermine/spermidine N-acetyltransferase K00657 speG; diamine N-acetyltransferase [EC:2.3.1.57]
D YPA_1345 arginine succinyltransferase K00673 astA; arginine N-succinyltransferase [EC:2.3.1.109]
D YPA_1347 succinylarginine dihydrolase K01484 astB; succinylarginine dihydrolase [EC:3.5.3.23]
D YPA_1344 succinylornithine aminotransferase K00840 astC; succinylornithine aminotransferase [EC:2.6.1.81]
D YPA_1346 succinylglutamic semialdehyde dehydrogenase K06447 astD; succinylglutamic semialdehyde dehydrogenase [EC:1.2.1.71]
D YPA_1348 succinylglutamate desuccinylase K05526 astE; succinylglutamate desuccinylase [EC:3.5.1.96]
D YPA_0323 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D YPA_1229 L-proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D YPA_2714 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D YPA_2713 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D YPA_1156 prolyl aminopeptidase. Serine peptidase. MEROPS family S33 K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D YPA_0704 L-aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
C 00340 Histidine metabolism [PATH:ypa00340]
D YPA_0845 ATP phosphoribosyltransferase (homohexameric) K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D YPA_0837 phosphoribosyl-ATP pyrophosphatase / phosphoribosyl-AMP cyclohydrolase K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31]
D YPA_0839 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D YPA_0840 imidazole glycerol phosphate synthase subunit hisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D YPA_0838 imidazole glycerol phosphate synthase subunit hisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D YPA_0842 imidazoleglycerol-phosphate dehydratase / histidinol-phosphate phosphatase K01089 hisB; imidazoleglycerol-phosphate dehydratase / histidinol-phosphatase [EC:4.2.1.19 3.1.3.15]
D YPA_0843 histidinol phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D YPA_0844 histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D YPA_4104 histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3]
D YPA_4105 urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49]
D YPA_1354 imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7]
D YPA_1356 formimidoylglutamate deiminase K05603 hutF; formimidoylglutamate deiminase [EC:3.5.3.13]
D YPA_1353 putative N-formylglutamate amidohydrolase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68]
C 00350 Tyrosine metabolism [PATH:ypa00350]
D YPA_0704 L-aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D YPA_0843 histidinol phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D YPA_3963 aromatic amino acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D YPA_0905 putative pyridoxal-dependent decarboxylase K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105]
D YPA_0797 alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D YPA_1537 aldehyde-alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D YPA_1141 4-hydroxyphenylacetate 3-monooxygenase K00483 hpaB; 4-hydroxyphenylacetate 3-monooxygenase [EC:1.14.14.9]
D YPA_1142 4-hydroxyphenylacetate 3-monooxygenase coupling protein K00484 hpaC; flavin reductase (NADH) [EC:1.5.1.36]
D YPA_1136 3,4-dihydroxyphenylacetate 2,3-dioxygenase K00455 hpaD; 3,4-dihydroxyphenylacetate 2,3-dioxygenase [EC:1.13.11.15]
D YPA_1135 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase K00151 hpaE; 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase [EC:1.2.1.60]
D YPA_1137 5-carboxymethyl-2-hydroxymuconate delta-isomerase K01826 hpaF; 5-carboxymethyl-2-hydroxymuconate isomerase [EC:5.3.3.10]
D YPA_1134 5-carboxymethyl-2-hydroxymuconate delta-isomerase K05921 hpaG; 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase [EC:4.1.1.68 5.3.3.-]
D YPA_1133 hypothetical protein K05921 hpaG; 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase [EC:4.1.1.68 5.3.3.-]
D YPA_1138 2-oxo-hept-3-ene-1,7-dioate hydratase K02509 hpaH; 2-oxo-hept-3-ene-1,7-dioate hydratase [EC:4.2.1.-]
D YPA_1139 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase K02510 hpaI; 4-hydroxy-2-oxoheptanedioate aldolase [EC:4.1.2.52]
D YPA_1008 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D YPA_3700 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00360 Phenylalanine metabolism [PATH:ypa00360]
D YPA_0905 putative pyridoxal-dependent decarboxylase K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105]
D YPA_0704 L-aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D YPA_0843 histidinol phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D YPA_3963 aromatic amino acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D YPA_1505 D-amino acid dehydrogenase small subunit K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
D YPA_2825 catalase-peroxidase K03782 katG; catalase-peroxidase [EC:1.11.1.21]
C 00380 Tryptophan metabolism [PATH:ypa00380]
D YPA_0592 2-oxoglutarate dehydrogenase E2 component K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D YPA_2919 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPA_0105 putative pyridine nucleotide-disulphide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPA_3436 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D YPA_2097 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D YPA_0905 putative pyridoxal-dependent decarboxylase K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105]
D YPA_0921 catalase K03781 katE; catalase [EC:1.11.1.6]
D YPA_2825 catalase-peroxidase K03782 katG; catalase-peroxidase [EC:1.11.1.21]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:ypa00400]
D YPA_2859 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D YPA_0608 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D YPA_1755 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D YPA_3317 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D YPA_3673 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D YPA_3226 shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D YPA_3318 shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D YPA_2707 shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D YPA_0681 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D YPA_2092 chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D YPA_1568 anthranilate synthase, component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D YPA_1567 anthranilate synthase, component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D YPA_1566 anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D YPA_1565 phosphoribosylanthranilate isomerase / indole-3-glycerol phosphate synthase K13498 trpCF; indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase [EC:4.1.1.48 5.3.1.24]
D YPA_1563 tryptophan synthase, alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D YPA_1564 tryptophan synthase, beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D YPA_2860 chorismate mutase / prephenate dehydrogenase K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12]
D YPA_0640 chorismate mutase K04093 pheA1; chorismate mutase [EC:5.4.99.5]
D YPA_2773 hypothetical protein K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D YPA_2800 extracellular solute-binding protein K01713 pheC; cyclohexadienyl dehydratase [EC:4.2.1.51 4.2.1.91]
D YPA_0704 L-aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D YPA_0843 histidinol phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D YPA_3963 aromatic amino acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:ypa00410]
D YPA_2904 L-aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D YPA_2283 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D YPA_2903 pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D YPA_3436 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D YPA_2097 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D YPA_2524 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
C 00430 Taurine and hypotaurine metabolism [PATH:ypa00430]
D YPA_2690 hypothetical protein K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D YPA_2691 gamma-glutamyltransferase 1. Threonine peptidase. MEROPS family T03 K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D YPA_3287 putative taurine dioxygenase K03119 tauD; taurine dioxygenase [EC:1.14.11.17]
D YPA_2056 phosphotransacetylase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D YPA_2055 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism [PATH:ypa00440]
D YPA_2961 PhnI protein K06164 phnI; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI [EC:2.7.8.37]
D YPA_2959 PhnG protein K06166 phnG; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnG [EC:2.7.8.37]
D YPA_2960 PhnH protein K06165 phnH; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnH [EC:2.7.8.37]
D YPA_2964 phosphonates transport ATP-binding protein K05780 phnL; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [EC:2.7.8.37]
D YPA_2965 PhnM protein K06162 phnM; alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase [EC:3.6.1.63]
D YPA_2962 PhnJ protein K06163 phnJ; alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase [EC:4.7.1.1]
D YPA_2967 PhnP protein K06167 phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]
C 00450 Selenocompound metabolism [PATH:ypa00450]
D YPA_0263 hypothetical protein K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D YPA_3111 cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D YPA_4004 cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D YPA_2195 putative aminotransferase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D YPA_0021 methionine synthase (B12-dependent) K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D YPA_0236 methionine synthase (B12-independent) K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D YPA_1745 cysteine desulfurase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D YPA_0664 thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D YPA_2778 sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D YPA_2777 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D YPA_1521 selenophosphate synthase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D YPA_3031 L-seryl-tRNA(Sec) selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D YPA_0816 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:ypa00460]
D YPA_3174 putative glycosyl hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D YPA_2548 putative beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D YPA_2690 hypothetical protein K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D YPA_2691 gamma-glutamyltransferase 1. Threonine peptidase. MEROPS family T03 K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D YPA_1518 asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D YPA_0677 asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D YPA_0003 aspartate-ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1]
D YPA_2347 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:ypa00470]
D YPA_3964 alanine racemase (biosynthetic) K01775 alr; alanine racemase [EC:5.1.1.1]
D YPA_3544 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D YPA_2085 putative aspartate/glutamate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10]
D YPA_1835 putative alanine racemase K25317 alr; amino-acid racemase [EC:5.1.1.10]
D YPA_0315 L-glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D YPA_1322 L-glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D YPA_0113 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D YPA_3548 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D YPA_1690 putative mandelate racemase / muconate lactonizing protein K19802 ycjG; L-Ala-D/L-Glu epimerase / N-acetyl-D-glutamate racemase [EC:5.1.1.20 5.1.1.25]
D YPA_1221 D-cysteine desulfhydrase K05396 dcyD; D-cysteine desulfhydrase [EC:4.4.1.15]
D YPA_0177 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D YPA_0473 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D YPA_0632 hypothetical protein K23120 cntL; histidine 2-aminobutanoyltransferase [EC:2.5.1.152 2.5.1.-]
D YPA_0633 hypothetical protein K23122 cntM; staphylopine/pseudopaline/yersinopine synthase [EC:1.5.1.52 1.5.1.-]
D YPA_1505 D-amino acid dehydrogenase small subunit K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
C 00480 Glutathione metabolism [PATH:ypa00480]
D YPA_2690 hypothetical protein K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D YPA_2691 gamma-glutamyltransferase 1. Threonine peptidase. MEROPS family T03 K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D YPA_2432 hypothetical protein K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9]
D YPA_2429 hypothetical protein K23123 pxpB; 5-oxoprolinase (ATP-hydrolysing) subunit B [EC:3.5.2.9]
D YPA_2431 hypothetical protein K23124 pxpC; 5-oxoprolinase (ATP-hydrolysing) subunit C [EC:3.5.2.9]
D YPA_2843 glutamate-cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D YPA_0330 glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D YPA_2942 PepA aminopeptidase. Metallo peptidase. MEROPS family M17 K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D YPA_2330 PepB aminopeptidase. Metallo peptidase. MEROPS family M17 K07751 pepB; PepB aminopeptidase [EC:3.4.11.23]
D YPA_0709 putative aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D YPA_2720 Xaa-His dipeptidase. Metallo peptidase. MEROPS family M20C K01270 pepD; dipeptidase D [EC:3.4.13.-]
D YPA_1713 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D YPA_1031 putative glutathione S-transferase-family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D YPA_3805 NADPH-glutathione reductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7]
D YPA_1883 isocitrate dehydrogenase (NADP) K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D YPA_0836 6-phosphogluconate dehydrogenase (decarboxylating) K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D YPA_1449 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D YPA_1768 putative vitamin B12 transport protein K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
D YPA_0106 putative peroxiredoxin/glutaredoxin family protein K24136 pgdX; glutathione-dependent peroxiredoxin [EC:1.11.1.27]
D YPA_0304 ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
D YPA_2913 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation [PATH:ypa00511]
D YPA_1868 beta-galactosidase. Glycosyl Hydrolase family 2 K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D YPA_2464 beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
C 00540 Lipopolysaccharide biosynthesis [PATH:ypa00540]
D YPA_0532 acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D YPA_3540 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D YPA_0530 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D YPA_2570 UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D YPA_0533 lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D YPA_0687 lipid-A-disaccharide synthase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D YPA_3726 hypothetical protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D YPA_1405 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D YPA_3725 hypothetical protein K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D YPA_0694 putative 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D YPA_3487 3-deoxy-D-manno-octulosonic-acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D YPA_1446 lipid A biosynthesis acyltransferase K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243]
D YPA_0994 lipid-A kinase K19803 lpxT; Kdo2-lipid A phosphotransferase [EC:2.7.4.29]
D YPA_1723 putative membrane protein K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D YPA_4101 phosphatidylethanolamine:Kdo2-lipid A phosphoethanolamine transferase K12975 eptB; KDO II ethanolaminephosphotransferase [EC:2.7.8.42]
D YPA_1118 Antimicrobial peptide resistance and lipid A acylation PagP K12973 pagP; lipid IVA palmitoyltransferase [EC:2.3.1.251]
D YPA_1762 dolichyl-phosphate-mannose-protein mannosyltransferase-family protein K07264 arnT; 4-amino-4-deoxy-L-arabinose transferase [EC:2.4.2.43]
D YPA_3645 putative membrane protein K12974 lpxP; KDO2-lipid IV(A) palmitoleoyltransferase [EC:2.3.1.242]
D YPA_2734 phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D YPA_3136 D-beta-D-heptose 1-phosphate adenylyltransferase / D-alpha,beta-D-heptose 7-phosphate 1-kinase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D YPA_0551 D-alpha,beta-D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D YPA_3484 ADP-glyceromanno-heptose 6-epimerase precursor K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D YPA_3486 lipopolysaccharide heptosyltransferase-1 K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D YPA_3485 ADP-heptose--LPS heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D YPA_3868 putative lipopolysaccharide core biosynthesis protein K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25]
C 00542 O-Antigen repeat unit biosynthesis [PATH:ypa00542]
D YPA_0152 putative undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:ypa00541]
D YPA_0835 UDP-glucose pyrophosphorylase regulatory subunit K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YPA_0834 UDP-glucose pyrophosphorylase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YPA_1047 UDP-galactose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D YPA_1532 putative nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D YPA_0157 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D YPA_0156 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D YPA_0159 putative lipopolysaccharide biosynthesis protein K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59]
D YPA_0158 putative lipopolysaccharide biosynthesis protein K16704 rffC; dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase [EC:2.3.1.210]
D YPA_2608 glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D YPA_2606 CDP-glucose 4,6-dehydratase K01709 rfbG; CDP-glucose 4,6-dehydratase [EC:4.2.1.45]
D YPA_2605 putative CDP-4-keto-6-deoxy-D-glucose-3-dehydratase K12452 ascC; CDP-4-dehydro-6-deoxyglucose reductase, E1 [EC:1.17.1.1]
D YPA_2609 cdp-6-deoxy-delta-3,4-glucoseen reductase K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1]
D YPA_2604 paratose synthase K12453 rfbS; CDP-paratose synthetase [EC:1.1.1.342]
D YPA_1623 mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D YPA_2592 phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D YPA_1975 phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D YPA_2594 mannose-1-phosphate guanylyltransferase (GDP) K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D YPA_2596 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D YPA_2597 hypothetical protein K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D YPA_2595 GDP-fucose synthetase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D YPA_4164 glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D YPA_0154 UDP-N-Acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D YPA_0155 putative UDP-glucose/GDP-mannose dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
C 00550 Peptidoglycan biosynthesis [PATH:ypa00550]
D YPA_3734 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D YPA_3429 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D YPA_3545 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D YPA_3548 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D YPA_3551 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D YPA_3544 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D YPA_3550 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D YPA_0525 Undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D YPA_3141 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D YPA_0615 Undecaprenyl-diphosphatase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D YPA_3549 Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D YPA_3546 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D YPA_3750 monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D YPA_3325 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D YPA_2893 penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D YPA_2531 hypothetical protein K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D YPA_2493 peptidoglycan glycosyltransferase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D YPA_3552 peptidoglycan synthetase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D YPA_2498 penicillin-binding protein 6. Serine peptidase. MEROPS family S11 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D YPA_1037 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D YPA_0611 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D YPA_0056 D-Ala-D-Ala peptidase C. Serine peptidase. MEROPS family S13 K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D YPA_2529 hypothetical protein K12551 sgtA; monofunctional glycosyltransferase [EC:2.4.99.28]
C 00552 Teichoic acid biosynthesis [PATH:ypa00552]
D YPA_3141 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D YPA_0615 Undecaprenyl-diphosphatase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D YPA_0152 putative undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:ypa00543]
D YPA_0152 putative undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D YPA_0163 UDP-N-acetyl-D-mannosaminuronic acid transferase K02852 wecG; UDP-N-acetyl-D-mannosaminouronate:lipid I N-acetyl-D-mannosaminouronosyltransferase [EC:2.4.1.180]
D YPA_0161 hypothetical protein K12582 wecF; dTDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase [EC:2.4.1.325]
D YPA_1336 haemin storage system, HmsR protein K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-]
D YPA_1337 haemin storage system, HmsS protein K11937 pgaD; biofilm PGA synthesis protein PgaD
D YPA_3473 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:ypa00730]
D YPA_3611 thiamine biosynthesis protein ThiC K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D YPA_2299 putative phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D YPA_3613 thiamine biosynthesis protein ThiF K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73]
D YPA_2337 putative aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YPA_1498 putative aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YPA_2667 thiamine biosynthesis protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D YPA_3616 thiamine biosynthesis protein ThiH K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19]
D YPA_2671 1-Deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D YPA_3615 thiamine biosynthesis protein ThiG K03149 thiG; thiazole synthase [EC:2.8.1.10]
D YPA_3612 thiamine-phosphate pyrophosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D YPA_2674 thiamine-monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D YPA_3919 hypothetical protein K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D YPA_1647 alkaline phosphatase precursor K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D YPA_1908 hypothetical protein K07251 thiK; thiamine kinase [EC:2.7.1.89]
D YPA_2611 Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:ypa00740]
D YPA_1581 GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D YPA_2677 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D YPA_0180 putative haloacid dehalogenase-like hydrolase K20862 yigB; FMN hydrolase / 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.102 3.1.3.104]
D YPA_3133 3,4-dihydroxy-2-butanone 4-phosphate synthase K02858 ribB; 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12]
D YPA_2676 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D YPA_1736 riboflavin synthase alpha chain K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D YPA_4067 FMN adenylyltransferase / riboflavin kinase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D YPA_1875 histidine acid phosphatase K01093 appA; 4-phytase / acid phosphatase [EC:3.1.3.26 3.1.3.2]
D YPA_1142 4-hydroxyphenylacetate 3-monooxygenase coupling protein K00484 hpaC; flavin reductase (NADH) [EC:1.5.1.36]
D YPA_3438 NAD(P)H-flavin reductase K05368 fre; NAD(P)H-flavin reductase [EC:1.5.1.41]
D YPA_3636 putative NAD(P)H-dependent FMN reductase K00299 ssuE; FMN reductase [EC:1.5.1.38]
D YPA_3128 putative MutT-family protein K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D YPA_1885 hypothetical protein K12152 nudJ; phosphatase NudJ [EC:3.6.1.-]
D YPA_2071 3-octaprenyl-4hydroxybenzoate decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00750 Vitamin B6 metabolism [PATH:ypa00750]
D YPA_1716 pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
D YPA_1714 Pyridoxal kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35]
D YPA_0342 D-erythrose 4-phosphate dehydrogenase K03472 epd; D-erythrose 4-phosphate dehydrogenase [EC:1.2.1.72]
D YPA_2080 putative D-isomer specific 2-hydroxyacid dehydrogenase K03473 pdxB; erythronate-4-phosphate dehydrogenase [EC:1.1.1.290]
D YPA_0680 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D YPA_4087 pyridoxal phosphate biosynthetic protein K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262]
D YPA_2369 pyridoxal phosphate biosynthetic protein PdxJ K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2]
D YPA_4053 L-threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
C 00760 Nicotinate and nicotinamide metabolism [PATH:ypa00760]
D YPA_2444 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D YPA_0605 quinolinate synthetase A K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D YPA_2926 nicotinate-nucleotide pyrophosphorylase (carboxylating) K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D YPA_0708 putative nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D YPA_1079 xanthosine phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D YPA_3844 purine-nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D YPA_3840 transcriptional regulator NadR K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D YPA_2586 5'-nucleotidase/2' 3'-cyclic phosphodiesterase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D YPA_2587 protein UshA precursor: UDP-sugar hydrolase (UDP-sugar diphosphatase) (UDP-sugar pyrophosphatase); 5'-nucleotidase (5'-NT) K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D YPA_2785 3'-nucleotidase / 5'-nucleotidase / exopolyphosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D YPA_2473 putative N-acetylglucosamine metabolism protein K02566 nagD; 5'-nucleotidase [EC:3.1.3.5]
D YPA_2490 nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D YPA_2876 hypothetical protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D YPA_3609 hypothetical protein K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]
D YPA_2352 putative glutamine-dependent NAD K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
D YPA_2837 putative competence-damaged protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D YPA_1517 putative pyrazinamidase/nicotinamidase K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-]
D YPA_1894 putative Sir2 family protein K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D YPA_0584 hypothetical protein K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D YPA_0108 soluble pyridine nucleotide transhydrogenase K00322 sthA; NAD(P) transhydrogenase [EC:1.6.1.1]
D YPA_1652 NAD(P) transhydrogenase alpha subunit K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D YPA_1651 NAD(P) transhydrogenase subunit beta K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1]
D YPA_1008 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D YPA_3700 succinate semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00770 Pantothenate and CoA biosynthesis [PATH:ypa00770]
D YPA_3560 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YPA_1642 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YPA_0121 acetolactate synthase, large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YPA_3559 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D YPA_1643 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D YPA_0122 acetolactate synthase, small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D YPA_0132 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D YPA_0124 dihydroxyacid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D YPA_2902 ketopantoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D YPA_2665 ketopantoate reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D YPA_2903 pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D YPA_3427 pantothenate kinase K00867 coaA; type I pantothenate kinase [EC:2.7.1.33]
D YPA_3494 Phosphopantothenoylcysteine decarboxylase / Phosphopantothenate-cysteine ligase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D YPA_2876 hypothetical protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D YPA_3489 Phosphopantetheine adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D YPA_2931 Dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D YPA_2368 holo-(acyl-carrier protein) synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D YPA_2688 hypothetical protein K08682 acpH; acyl carrier protein phosphodiesterase [EC:3.1.4.14]
D YPA_0123 branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D YPA_2904 L-aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
C 00780 Biotin metabolism [PATH:ypa00780]
D YPA_1060 biotin synthesis protein BioC K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197]
D YPA_0748 putative beta-ketoacyl-(acyl-carrier-protein) synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D YPA_2086 3-oxoacyl-[acyl-carrier-protein] synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D YPA_1924 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D YPA_0719 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D YPA_0749 putative beta-ketoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D YPA_1926 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D YPA_0747 putative (3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydrase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D YPA_0531 3-hydroxyacyl-[acyl-carrier-protein] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D YPA_3340 putative biotin biosynthesis protein K02170 bioH; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85]
D YPA_1059 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D YPA_1057 adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D YPA_1061 dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D YPA_1629 dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D YPA_1058 biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6]
D YPA_3428 bifunctional protein BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D YPA_0475 putative biotin sulfoxide reductas2 K08351 bisC; biotin/methionine sulfoxide reductase [EC:1.-.-.-]
C 00785 Lipoic acid metabolism [PATH:ypa00785]
D YPA_2500 lipoate-protein ligase B K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D YPA_2501 lipoic acid synthetase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D YPA_1758 lipoate-protein ligase K03800 lplA; lipoate---protein ligase [EC:6.3.1.20]
D YPA_2919 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPA_0105 putative pyridine nucleotide-disulphide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPA_2921 pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D YPA_2920 dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D YPA_0591 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D YPA_0592 2-oxoglutarate dehydrogenase E2 component K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D YPA_0362 glycine dehydrogenase (decarboxylating) beta subunit / glycine dehydrogenase (decarboxylating) alpha subunit K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D YPA_0360 aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D YPA_0361 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:ypa00790]
D YPA_0800 GTP cyclohydrolase K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D YPA_1647 alkaline phosphatase precursor K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D YPA_1436 putative dATP pyrophosphohydrolase K08310 nudB; dihydroneopterin triphosphate diphosphatase [EC:3.6.1.67]
D YPA_3142 putative dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D YPA_2901 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D YPA_0051 Dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D YPA_4079 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D YPA_2075 putative FolC bifunctional protein K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D YPA_1581 GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D YPA_3300 aminodeoxychorismate synthase, glutamine amidotransferase subunit K01664 pabA; para-aminobenzoate synthetase component II [EC:2.6.1.85]
D YPA_1145 aminodeoxychorismate synthase, subunit I K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85]
D YPA_1922 aminodeoxychorismate lyase apoprotein K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
D YPA_2871 putative 6-pyruvoyl tetrahydrobiopterin synthase family protein K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D YPA_2872 hypothetical protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D YPA_2645 hypothetical protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D YPA_0508 hypothetical protein K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D YPA_1066 GTP cyclohydrolase subunit MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D YPA_1067 GTP cyclohydrolase subunit MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D YPA_1069 molybdopterin synthase subunit MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D YPA_4058 molybdopterin adenylyltransferase K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D YPA_0791 molybdopterin molybdochelatase K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D YPA_3529 molybdenum cofactor guanylyltransferase K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77]
C 00670 One carbon pool by folate [PATH:ypa00670]
D YPA_4079 dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D YPA_2565 5,10-methylenetetrahydrofolate dehydrogenase (NADP+) / Methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D YPA_2347 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D YPA_2266 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D YPA_3601 IMP cyclohydrolase / phosphoribosylaminoimidazolecarboxamide formyltransferase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D YPA_3232 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D YPA_0360 aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D YPA_0021 methionine synthase (B12-dependent) K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D YPA_0485 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D YPA_1529 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D YPA_3994 putative methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D YPA_0266 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D YPA_0354 putative 5-formyltetrahydrofolate cyclo-ligase-family protein K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:ypa00860]
D YPA_2173 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D YPA_1400 glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D YPA_2889 glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D YPA_3441 porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D YPA_0172 hydroxymethylbilane synthase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D YPA_0171 uroporphyrinogen-III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D YPA_3607 uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D YPA_2220 coproporphyrinogen oxidase K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3]
D YPA_3521 coproporphyrinogen III oxidase, anaerobic K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3]
D YPA_3430 protoporphyrinogen oxidase K00230 hemG; menaquinone-dependent protoporphyrinogen oxidase [EC:1.3.5.3]
D YPA_2610 ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D YPA_0170 putative uroporphyrin-III C-methyltransferase K02496 hemX; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D YPA_2776 siroheme synthase K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]
D YPA_3311 precorrin-2 dehydrogenase / uroporphyrinogen-III C-methyltransferase K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]
D YPA_2662 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D YPA_MT0060 porphyrin biosynthetic protein K09882 cobS; cobaltochelatase CobS [EC:6.6.1.2]
D YPA_1572 cob(I)yrinic acid a,c-diamide adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D YPA_3265 bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:ypa00130]
D YPA_3974 chorismate lyase K03181 ubiC; chorismate lyase [EC:4.1.3.40]
D YPA_3973 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D YPA_3439 3-octaprenyl-4hydroxybenzoate decarboxylase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98]
D YPA_2071 3-octaprenyl-4hydroxybenzoate decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D YPA_0359 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase K18800 ubiI; 2-polyprenylphenol 6-hydroxylase [EC:1.14.13.240]
D YPA_0929 3-demethylubiquinone-9 3-methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
D YPA_0358 2-octaprenyl-6-methoxyphenol hydroxylase / 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
D YPA_0243 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase / demethylmenaquinone methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D YPA_2476 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase K03184 ubiF; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60]
D YPA_2020 menaquinone-specific isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
D YPA_2019 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9]
D YPA_2018 hypothetical protein K08680 menH; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [EC:4.2.99.20]
D YPA_2016 O-succinylbenzoate synthase K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113]
D YPA_2015 putative O-succinylbenzoic acid--CoA ligase K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26]
D YPA_2017 1,4-Dihydroxy-2-naphthoate synthase K01661 menB; naphthoate synthase [EC:4.1.3.36]
D YPA_1750 hypothetical protein K19222 menI; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28]
D YPA_0254 1,4-Dihydroxy-2-naphtoate prenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D YPA_1236 trp repressor binding protein K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D YPA_1879 hypothetical protein K19267 qorB; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:ypa00900]
D YPA_2671 1-Deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D YPA_0524 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D YPA_2782 4-diphosphocytidyl-2C-methyl-D-erythritol synthase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D YPA_1398 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D YPA_2783 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D YPA_2319 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D YPA_4071 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D YPA_0750 hydroxymethylglutaryl-CoA synthase K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10]
D YPA_2071 3-octaprenyl-4hydroxybenzoate decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D YPA_2670 farnesyl-diphosphate synthase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D YPA_0063 octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D YPA_0525 Undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation [PATH:ypa00907]
D YPA_3436 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D YPA_2097 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D YPA_3437 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D YPA_2098 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D YPA_2830 transketolase subunit A K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D YPA_2831 transketolase subunit B K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D YPA_0340 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:ypa00523]
D YPA_0157 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D YPA_0156 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides [PATH:ypa01053]
D YPA_2020 menaquinone-specific isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
D YPA_0876 putative phosphopantetheinyl transferase K02362 entD; enterobactin synthetase component D [EC:6.3.2.14 2.7.8.-]
D YPA_1294 putative salicylate synthetase K04781 mbtI; salicylate synthetase [EC:5.4.4.2 4.2.99.21]
D YPA_3374 putative siderophore biosysnthesis protein K12240 pchF; L-cysteine---[L-cysteinyl-carrier protein] ligase PchF [EC:6.2.1.69]
D YPA_3376 hypothetical protein K12241 pchG; pyochelin biosynthesis protein PchG
D YPA_1285 yersiniabactin siderophore biosynthetic protein K04783 irp5; yersiniabactin salicyl-AMP ligase [EC:6.3.2.-]
D YPA_1289 yersiniabactin biosynthetic protein K04784 irp2; yersiniabactin nonribosomal peptide synthetase
D YPA_1287 yersiniabactin biosynthetic protein YbtU K04785 irp3; yersiniabactin synthetase, thiazolinyl reductase component
D YPA_1288 yersiniabactin biosynthetic protein K04786 irp1; yersiniabactin nonribosomal peptide/polyketide synthase
C 01055 Biosynthesis of vancomycin group antibiotics
D YPA_0156 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids [PATH:ypa00946]
D YPA_3174 putative glycosyl hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D YPA_2548 putative beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis [PATH:ypa00332]
D YPA_2714 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D YPA_2713 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:ypa00261]
D YPA_2778 sulfate adenylyltransferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D YPA_2777 sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D YPA_0025 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D YPA_4051 aspartate kinase / homoserine dehydrogenase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D YPA_0265 homoserine dehydrogenase / aspartate kinase K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D YPA_3777 aspartate semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D YPA_2253 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D YPA_4073 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:ypa00521]
D YPA_2166 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D YPA_2414 phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D YPA_2340 putative inositol monophosphatase family protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D YPA_2521 putative myo-inositol 2-dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D YPA_2522 hypothetical protein K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D YPA_0157 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D YPA_0156 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D YPA_2166 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis [PATH:ypa00525]
D YPA_0157 Glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D YPA_0156 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:ypa00401]
D YPA_2860 chorismate mutase / prephenate dehydrogenase K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12]
D YPA_0704 L-aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D YPA_0843 histidinol phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D YPA_3963 aromatic amino acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D YPA_1568 anthranilate synthase, component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D YPA_1567 anthranilate synthase, component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D YPA_0756 putative acyl transferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D YPA_1927 [Acyl-carrier-protein] S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D YPA_0749 putative beta-ketoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D YPA_1926 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D YPA_1925 acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:ypa00999]
D YPA_0335 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D YPA_3226 shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D YPA_3174 putative glycosyl hydrolase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D YPA_2548 putative beta-glucosidase K05349 bglX; beta-glucosidase [EC:3.2.1.21]
C 00997 Biosynthesis of various other secondary metabolites [PATH:ypa00997]
D YPA_0271 putative siderophore biosynthesis protein IucD K03897 iucD; lysine N6-hydroxylase [EC:1.14.13.59]
D YPA_0273 putative siderophore biosynthesis protein IucB K03896 iucB; acetyl CoA:N6-hydroxylysine acetyl transferase [EC:2.3.1.102]
D YPA_0274 siderophore biosynthesis protein, IucA familly K03894 iucA; N2-citryl-N6-acetyl-N6-hydroxylysine synthase [EC:6.3.2.38]
D YPA_0275 hypothetical protein K03894 iucA; N2-citryl-N6-acetyl-N6-hydroxylysine synthase [EC:6.3.2.38]
D YPA_0272 putative siderophore biosynthesis protein IucC K03895 iucC; aerobactin synthase [EC:6.3.2.39]
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:ypa00362]
D YPA_3437 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D YPA_2098 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D YPA_3817 putative tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D YPA_3662 putative gamma carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
D YPA_1381 putative decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
D YPA_3458 hypothetical protein K16515 galB; 4-oxalomesaconate hydratase [EC:4.2.1.83]
D YPA_3459 transferase K10218 ligK; 4-hydroxy-4-methyl-2-oxoglutarate aldolase [EC:4.1.3.17]
D YPA_2097 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D YPA_3436 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
C 00627 Aminobenzoate degradation [PATH:ypa00627]
D YPA_0738 putative acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D YPA_2071 3-octaprenyl-4hydroxybenzoate decarboxylase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00364 Fluorobenzoate degradation [PATH:ypa00364]
D YPA_0237 putative carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00625 Chloroalkane and chloroalkene degradation [PATH:ypa00625]
D YPA_0797 alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D YPA_1537 aldehyde-alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:ypa00361]
D YPA_0237 putative carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00623 Toluene degradation [PATH:ypa00623]
D YPA_0237 putative carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00622 Xylene degradation
D YPA_3817 putative tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00633 Nitrotoluene degradation [PATH:ypa00633]
D YPA_1725 NADH:flavin oxidoreductase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]
D YPA_1086 NADH:flavin oxidoreductase, old yellow enzyme family K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]
C 00642 Ethylbenzene degradation
D YPA_3437 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D YPA_2098 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 00643 Styrene degradation
C 00791 Atrazine degradation
D YPA_2394 urease alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D YPA_2393 urease beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5]
D YPA_2392 urease gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5]
C 00930 Caprolactam degradation [PATH:ypa00930]
D YPA_3436 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D YPA_2097 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
D YPA_3817 putative tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00626 Naphthalene degradation [PATH:ypa00626]
D YPA_0797 alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D YPA_1537 aldehyde-alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:ypa03020]
D YPA_3619 DNA-directed RNA polymerase beta chain K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D YPA_3618 DNA-directed RNA polymerase beta' chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D YPA_3239 DNA-directed RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D YPA_3503 DNA-directed RNA polymerase, omega chain K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:ypa03010]
D YPA_0683 SSU ribosomal protein S1P K02945 RP-S1; small subunit ribosomal protein S1
D YPA_0518 SSU ribosomal protein S2P K02967 RP-S2; small subunit ribosomal protein S2
D YPA_3257 SSU ribosomal protein S3P K02982 RP-S3; small subunit ribosomal protein S3
D YPA_3240 SSU ribosomal protein S4P K02986 RP-S4; small subunit ribosomal protein S4
D YPA_3246 SSU ribosomal protein S5P K02988 RP-S5; small subunit ribosomal protein S5
D YPA_0089 SSU ribosomal protein S6P K02990 RP-S6; small subunit ribosomal protein S6
D YPA_3271 SSU ribosomal protein S7P K02992 RP-S7; small subunit ribosomal protein S7
D YPA_3249 SSU ribosomal protein S8P K02994 RP-S8; small subunit ribosomal protein S8
D YPA_3741 SSU ribosomal protein S9P K02996 RP-S9; small subunit ribosomal protein S9
D YPA_3264 SSU ribosomal protein S10P K02946 RP-S10; small subunit ribosomal protein S10
D YPA_3241 SSU ribosomal protein S11P K02948 RP-S11; small subunit ribosomal protein S11
D YPA_3272 SSU ribosomal protein S12P K02950 RP-S12; small subunit ribosomal protein S12
D YPA_3242 SSU ribosomal protein S13P K02952 RP-S13; small subunit ribosomal protein S13
D YPA_3250 SSU ribosomal protein S14P K02954 RP-S14; small subunit ribosomal protein S14
D YPA_0043 SSU ribosomal protein S15P K02956 RP-S15; small subunit ribosomal protein S15
D YPA_2849 SSU ribosomal protein S16P K02959 RP-S16; small subunit ribosomal protein S16
D YPA_3254 SSU ribosomal protein S17P K02961 RP-S17; small subunit ribosomal protein S17
D YPA_0087 SSU ribosomal protein S18P K02963 RP-S18; small subunit ribosomal protein S18
D YPA_3259 SSU ribosomal protein S19P K02965 RP-S19; small subunit ribosomal protein S19
D YPA_4066 SSU ribosomal protein S20P K02968 RP-S20; small subunit ribosomal protein S20
D YPA_3145 SSU ribosomal protein S21P K02970 RP-S21; small subunit ribosomal protein S21
D YPA_3622 LSU ribosomal protein L1P K02863 RP-L1; large subunit ribosomal protein L1
D YPA_3260 LSU ribosomal protein L2P K02886 RP-L2; large subunit ribosomal protein L2
D YPA_3263 LSU ribosomal protein L3P K02906 RP-L3; large subunit ribosomal protein L3
D YPA_3262 LSU ribosomal protein L4P K02926 RP-L4; large subunit ribosomal protein L4
D YPA_3251 LSU ribosomal protein L5P K02931 RP-L5; large subunit ribosomal protein L5
D YPA_3248 LSU ribosomal protein L6P K02933 RP-L6; large subunit ribosomal protein L6
D YPA_3620 LSU ribosomal protein L12P K02935 RP-L7; large subunit ribosomal protein L7/L12
D YPA_0086 LSU ribosomal protein L9P K02939 RP-L9; large subunit ribosomal protein L9
D YPA_3621 LSU ribosomal protein L10P K02864 RP-L10; large subunit ribosomal protein L10
D YPA_3623 LSU ribosomal protein L11P K02867 RP-L11; large subunit ribosomal protein L11
D YPA_3740 LSU ribosomal protein L13P K02871 RP-L13; large subunit ribosomal protein L13
D YPA_3253 LSU ribosomal protein L14P K02874 RP-L14; large subunit ribosomal protein L14
D YPA_3244 LSU ribosomal protein L15P K02876 RP-L15; large subunit ribosomal protein L15
D YPA_3256 LSU ribosomal protein L16P K02878 RP-L16; large subunit ribosomal protein L16
D YPA_3238 LSU ribosomal protein L17P K02879 RP-L17; large subunit ribosomal protein L17
D YPA_3247 LSU ribosomal protein L18P K02881 RP-L18; large subunit ribosomal protein L18
D YPA_2852 LSU ribosomal protein L19P K02884 RP-L19; large subunit ribosomal protein L19
D YPA_1775 LSU ribosomal protein L20P K02887 RP-L20; large subunit ribosomal protein L20
D YPA_0062 LSU ribosomal protein L21P K02888 RP-L21; large subunit ribosomal protein L21
D YPA_3258 LSU ribosomal protein L22P K02890 RP-L22; large subunit ribosomal protein L22
D YPA_3261 LSU ribosomal protein L23P K02892 RP-L23; large subunit ribosomal protein L23
D YPA_3252 LSU ribosomal protein L24P K02895 RP-L24; large subunit ribosomal protein L24
D YPA_0982 LSU ribosomal protein L25P K02897 RP-L25; large subunit ribosomal protein L25
D YPA_0061 LSU ribosomal protein L27P K02899 RP-L27; large subunit ribosomal protein L27
D YPA_3492 LSU ribosomal protein L28P K02902 RP-L28; large subunit ribosomal protein L28
D YPA_3255 LSU ribosomal protein L29P K02904 RP-L29; large subunit ribosomal protein L29
D YPA_3245 LSU ribosomal protein L30P K02907 RP-L30; large subunit ribosomal protein L30
D YPA_0260 LSU ribosomal protein L31P K02909 RP-L31; large subunit ribosomal protein L31
D YPA_2629 LSU ribosomal protein L31P K02909 RP-L31; large subunit ribosomal protein L31
D YPA_1930 LSU ribosomal protein L32P K02911 RP-L32; large subunit ribosomal protein L32
D YPA_3491 LSU ribosomal protein L33P K02913 RP-L33; large subunit ribosomal protein L33
D YPA_4144 LSU ribosomal protein L34P K02914 RP-L34; large subunit ribosomal protein L34
D YPA_1776 LSU ribosomal protein L35P K02916 RP-L35; large subunit ribosomal protein L35
D YPA_2630 LSU ribosomal protein L36P K02919 RP-L36; large subunit ribosomal protein L36
D YPA_r009 16S RNA K01977 16SrRNA; 16S ribosomal RNA
D YPA_r073 16S RNA K01977 16SrRNA; 16S ribosomal RNA
D YPA_r025 16S RNA K01977 16SrRNA; 16S ribosomal RNA
D YPA_r082 16S RNA K01977 16SrRNA; 16S ribosomal RNA
D YPA_r001 16S RNA K01977 16SrRNA; 16S ribosomal RNA
D YPA_r088 16S RNA K01977 16SrRNA; 16S ribosomal RNA
D YPA_r093 16S RNA K01977 16SrRNA; 16S ribosomal RNA
D YPA_r011 23S RNA K01980 23SrRNA; 23S ribosomal RNA
D YPA_r003 23S RNA K01980 23SrRNA; 23S ribosomal RNA
D YPA_r086 23S RNA K01980 23SrRNA; 23S ribosomal RNA
D YPA_r070 23S RNA K01980 23SrRNA; 23S ribosomal RNA
D YPA_r027 23S RNA K01980 23SrRNA; 23S ribosomal RNA
D YPA_r079 23S RNA K01980 23SrRNA; 23S ribosomal RNA
D YPA_r090 23S RNA K01980 23SrRNA; 23S ribosomal RNA
D YPA_r004 5S RNA K01985 5SrRNA; 5S ribosomal RNA
D YPA_r078 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPA_r012 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPA_r028 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPA_r089 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPA_r069 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPA_r085 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:ypa00970]
D YPA_r071 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YPA_r080 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YPA_r091 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YPA_r059 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YPA_r067 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YPA_r015 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YPA_r055 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YPA_r036 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D YPA_r048 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D YPA_r041 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D YPA_r013 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D YPA_r029 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D YPA_r030 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D YPA_r046 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D YPA_r063 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D YPA_r064 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D YPA_r066 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D YPA_r002 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D YPA_r010 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D YPA_r026 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D YPA_r087 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D YPA_r095 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YPA_r021 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YPA_r045 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YPA_r101 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YPA_r102 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YPA_r016 tRNA-His K14226 tRNA-His; tRNA His
D YPA_r072 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D YPA_r092 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D YPA_r081 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D YPA_r007 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPA_r062 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPA_r074 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPA_r017 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPA_r100 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPA_r047 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPA_r032 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YPA_r056 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YPA_r033 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YPA_r044 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YPA_r034 pseudogene K14229 tRNA-Lys; tRNA Lys
D YPA_r061 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPA_r065 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPA_r077 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPA_r006 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPA_r022 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPA_r023 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPA_r019 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D YPA_r103 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D YPA_r018 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D YPA_r099 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D YPA_r040 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D YPA_r038 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YPA_r050 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YPA_r049 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YPA_r035 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YPA_r094 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D YPA_r005 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D YPA_r039 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D YPA_r097 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D YPA_r014 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D YPA_r051 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D YPA_r096 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D YPA_r057 tRNA-Val K14237 tRNA-Val; tRNA Val
D YPA_r058 tRNA-Val K14237 tRNA-Val; tRNA Val
D YPA_r052 tRNA-Val K14237 tRNA-Val; tRNA Val
D YPA_r053 tRNA-Val K14237 tRNA-Val; tRNA Val
D YPA_r104 tRNA-Sec K14238 tRNA-Sec; tRNA Sec
D YPA_2173 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D YPA_2467 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D YPA_2840 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D YPA_1435 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D YPA_0707 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D YPA_3011 glycyl-tRNA synthetase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D YPA_3012 glycyl-tRNA synthetase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D YPA_1778 Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D YPA_0669 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D YPA_3031 L-seryl-tRNA(Sec) selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D YPA_2568 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D YPA_0816 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D YPA_3232 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D YPA_2944 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D YPA_2487 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D YPA_4068 Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D YPA_0381 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D YPA_1428 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D YPA_0545 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D YPA_2318 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D YPA_1773 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D YPA_1772 phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D YPA_1715 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D YPA_3312 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:ypa03060]
D YPA_3243 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY
D YPA_3625 protein translocase subunit secE/sec61 gamma K03073 secE; preprotein translocase subunit SecE
D YPA_0049 protein translocase subunit secG K03075 secG; preprotein translocase subunit SecG
D YPA_2684 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D YPA_2683 protein translocase subunit secF K03074 secF; preprotein translocase subunit SecF
D YPA_2685 protein translocase subunit yajC K03210 yajC; preprotein translocase subunit YajC
D YPA_4147 protein translocase subunit yidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D YPA_3537 protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D YPA_3475 protein translocase subunit secB K03071 secB; preprotein translocase subunit SecB
D YPA_3538 hypothetical protein K13301 secM; secretion monitor
D YPA_2848 signal recognition particle subunit FFH/SRP54 (srp54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D YPA_r068 ffs; SRP RNA K01983 ffs; SRP RNA
D YPA_0208 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D YPA_0246 Sec-independent protein translocase protein TatA K03116 tatA; sec-independent protein translocase protein TatA
D YPA_0247 Sec-independent protein translocase TatB K03117 tatB; sec-independent protein translocase protein TatB
D YPA_0248 Sec-independent protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC
D YPA_2502 sec-independent protein translocase protein K03425 tatE; sec-independent protein translocase protein TatE
D YPA_2451 signal peptidase I. Serine peptidase. MEROPS family S26A K03100 lepB; signal peptidase I [EC:3.4.21.89]
D YPA_4069 signal peptidase II. Aspartic peptidase. MEROPS family A08 K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:ypa04122]
D YPA_2337 putative aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YPA_1498 putative aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YPA_0906 putative sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D YPA_0201 hypothetical protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D YPA_3273 hypothetical protein K07237 tusB; tRNA 2-thiouridine synthesizing protein B
D YPA_3274 hypothetical protein K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D YPA_3275 hypothetical protein K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D YPA_0739 putative sulfite reductase subunit protein K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D YPA_1886 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D YPA_1069 molybdopterin synthase subunit MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D YPA_1066 GTP cyclohydrolase subunit MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D YPA_1068 molybdopterin synthase subunit MoaD K03636 moaD; sulfur-carrier protein
D YPA_0790 [molybdopterin synthase] sulfurylase K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]
D YPA_1067 GTP cyclohydrolase subunit MoaC K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D YPA_4058 molybdopterin adenylyltransferase K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D YPA_2667 thiamine biosynthesis protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D YPA_3614 ThiS, thiamine-biosynthesis K03154 thiS; sulfur carrier protein
D YPA_3613 thiamine biosynthesis protein ThiF K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73]
C 03050 Proteasome
C 03018 RNA degradation [PATH:ypa03018]
D YPA_0482 hypothetical protein K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D YPA_1935 RNAse E K08300 rne; ribonuclease E [EC:3.1.26.12]
D YPA_0149 putative DEAD-box helicase K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
D YPA_2874 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D YPA_2992 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D YPA_1095 DEAD/DEAH box helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D YPA_0882 helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D YPA_3904 RNAse R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D YPA_2990 cold-shock dead-box protein A K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D YPA_0189 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D YPA_0151 transcription termination factor Rho K03628 rho; transcription termination factor Rho
D YPA_3463 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D YPA_4062 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D YPA_3931 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D YPA_3911 RNA-binding protein Hfq K03666 hfq; host factor-I protein
D YPA_2273 polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D YPA_2900 poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:ypa03030]
D YPA_1157 DNA polymerase III, theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D YPA_0560 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D YPA_MT0059 DNA polymerase III K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D YPA_0535 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D YPA_2616 DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D YPA_1919 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D YPA_2489 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D YPA_3856 DNA polymerase III, psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D YPA_2943 DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D YPA_4142 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D YPA_3965 primary replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D YPA_3146 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D YPA_3960 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D YPA_0559 RNase HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D YPA_0534 RNase HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D YPA_3525 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D YPA_3501 putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D YPA_2178 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:ypa03410]
D YPA_1598 DNA-(apurinic or apyrimidinic site) lyase / endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D YPA_2437 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D YPA_0312 A/G-specific DNA-adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D YPA_3490 DNA-(apurinic or apyrimidinic site) lyase / Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D YPA_1210 putative glycosidase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D YPA_3010 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D YPA_1525 Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D YPA_1023 Endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D YPA_3525 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D YPA_0379 exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D YPA_3501 putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D YPA_2178 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:ypa03420]
D YPA_1900 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D YPA_3961 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
D YPA_1063 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
D YPA_1244 Excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
D YPA_0181 ATP-dependent DNA helicase UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D YPA_3525 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D YPA_3501 putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D YPA_2178 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:ypa03430]
D YPA_2789 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D YPA_3913 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D YPA_0481 DNA mismatch repair protein MutH K03573 mutH; DNA mismatch repair protein MutH
D YPA_0181 ATP-dependent DNA helicase UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D YPA_0853 Exodeoxyribonuclease I subunit C K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D YPA_2313 Exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D YPA_2669 Exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D YPA_0379 exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D YPA_3960 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D YPA_MT0059 DNA polymerase III K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D YPA_0535 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D YPA_4142 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D YPA_2616 DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D YPA_2489 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D YPA_1919 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D YPA_0560 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D YPA_1157 DNA polymerase III, theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D YPA_2943 DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D YPA_3856 DNA polymerase III, psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D YPA_3501 putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D YPA_2178 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D YPA_3315 DNA adenine methylase Dam K06223 dam; DNA adenine methylase [EC:2.1.1.72]
C 03440 Homologous recombination [PATH:ypa03440]
D YPA_0379 exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D YPA_3960 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D YPA_4141 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
D YPA_2454 DNA replication and repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D YPA_2614 DNA replication and repair protein RecR K06187 recR; recombination protein RecR
D YPA_2838 RecA protein K03553 recA; recombination protein RecA
D YPA_3525 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D YPA_1440 Holliday junction DNA helicase subunit RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D YPA_1441 Holliday junction DNA helicase subunit RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D YPA_1438 Holliday junction endonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D YPA_3506 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D YPA_0492 DNA helicase/exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D YPA_0490 DNA helicase/exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D YPA_0493 DNA helicase/exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D YPA_MT0059 DNA polymerase III K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D YPA_0535 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D YPA_4142 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D YPA_2616 DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D YPA_2489 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D YPA_1919 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D YPA_0560 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D YPA_1157 DNA polymerase III, theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D YPA_2943 DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D YPA_3856 DNA polymerase III, psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D YPA_0259 replication restart DNA helicase PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D YPA_0088 restart primosome assembly protein PriB K02686 priB; primosomal replication protein N
D YPA_2619 restart primosome assembly protein PriC K04067 priC; primosomal replication protein N''
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1 [PATH:ypa03250]
D YPA_3302 peptidyl-prolyl cis-trans isomerase A K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus and Lyssavirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:ypa02010]
D YPA_2204 thiosulfate-binding protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein
D YPA_3462 exported sulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D YPA_2203 sulfate transport system permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D YPA_2202 sulfate transport system permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D YPA_2201 sulfate transport ATP-binding protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D YPA_3290 putative taurine-binding periplasmic protein precursor K15551 tauA; taurine transport system substrate-binding protein
D YPA_3288 putative taurine transport system permease protein K15552 tauC; taurine transport system permease protein
D YPA_3289 putative taurine transport ATP-binding protein K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7]
D YPA_3637 putative aliphatic sulfonates binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D YPA_3639 putative aliphatic sulfonates transport permease protein K15554 ssuC; sulfonate transport system permease protein
D YPA_3640 putative aliphatic sulfonates transport ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D YPA_3461 hypothetical protein K02020 modA; molybdate transport system substrate-binding protein
D YPA_1052 molybdate-binding periplasmic protein precursor K02020 modA; molybdate transport system substrate-binding protein
D YPA_1053 molybdenum transport system permease protein ModB K02018 modB; molybdate transport system permease protein
D YPA_1054 molybdenum transport ATP-binding protein ModC K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D YPA_1049 putative molybdenum transport ATP-binding protein modF K05776 modF; molybdate transport system ATP-binding protein
D YPA_2241 hypothetical protein K02012 afuA; iron(III) transport system substrate-binding protein
D YPA_2148 iron(III)-binding periplasmic protein K02012 afuA; iron(III) transport system substrate-binding protein
D YPA_2240 putative binding protein-dependent transport system, inner-membrane component K02011 afuB; iron(III) transport system permease protein
D YPA_2149 iron(III)-transport system permease K02011 afuB; iron(III) transport system permease protein
D YPA_2150 iron(III)-transport ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D YPA_2239 ABC-transporter, ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D YPA_3573 thiamine-binding periplasmic protein K02064 thiB; thiamine transport system substrate-binding protein
D YPA_3574 thiamine transport system permease protein K02063 thiP; thiamine transport system permease protein
D YPA_3575 thiamine transport ATP-binding protein K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]
D YPA_0621 putrescine-binding periplasmic protein precursor K11073 potF; putrescine transport system substrate-binding protein
D YPA_0624 putrescine transport system permease protein K11074 potI; putrescine transport system permease protein
D YPA_0623 putrescine transport system permease protein K11075 potH; putrescine transport system permease protein
D YPA_0622 putrescine transport ATP-binding protein K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16]
D YPA_2373 glycine betaine-binding periplasmic protein K02002 proX; glycine betaine/proline transport system substrate-binding protein
D YPA_2374 glycine betaine/L-proline transport system permease K02001 proW; glycine betaine/proline transport system permease protein
D YPA_2375 glycine betaine/L-proline transport ATP-binding protein K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D YPA_0907 hypothetical protein K05845 opuC; osmoprotectant transport system substrate-binding protein
D YPA_0908 ABC type periplasmic choline/glycine/betaine binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein
D YPA_0909 putative ABC transport integral membrane subunit K05846 opuBD; osmoprotectant transport system permease protein
D YPA_0911 putative ABC transport integral membrane subunit K05846 opuBD; osmoprotectant transport system permease protein
D YPA_0910 putative ABC transport ATP-binding subunit K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D YPA_0030 maltose-binding periplasmic protein precursor K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D YPA_0029 maltose transport system permease protein MalF K10109 malF; maltose/maltodextrin transport system permease protein
D YPA_0028 maltose transport system permease protein MalG K10110 malG; maltose/maltodextrin transport system permease protein
D YPA_0032 maltose/maltodextrin transport ATP-binding protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPA_1976 putative mannitol transport ATP-binding protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPA_0413 sugar transport ATP-binding protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPA_1273 ABC-type sugar transport systems, ATPase components K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPA_1272 putative binding-protein-dependent transport system, ATP-binding component K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPA_3181 putative transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPA_2971 putative sugar ABC transporter, ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPA_0414 putative sugar-binding protein K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein
D YPA_0415 putative maltodextrin transport permease K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D YPA_0416 putative maltodextrin permease protein K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D YPA_1802 putative sugar-binding protein K10192 togB; oligogalacturonide transport system substrate-binding protein
D YPA_1799 putative ABC sugar transporter (permease) K10193 togM; oligogalacturonide transport system permease protein
D YPA_1800 putative sugar ABC transporter (permease) K10194 togN; oligogalacturonide transport system permease protein
D YPA_1801 putative sugar ABC transporter K10195 togA; oligogalacturonide transport system ATP-binding protein
D YPA_3731 hypothetical protein K07323 mlaC; phospholipid transport system substrate-binding protein
D YPA_3730 putative membrane protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D YPA_3729 putative membrane protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D YPA_3732 putative anti-sigma B factor antagonist K07122 mlaB; phospholipid transport system transporter-binding protein
D YPA_3728 putative ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D YPA_0305 putative sugar ABC transporter periplasmic binding protein K10439 rbsB; ribose transport system substrate-binding protein
D YPA_1996 sugar binding protein precursor K10439 rbsB; ribose transport system substrate-binding protein
D YPA_3790 sugar-binding transport protein K10439 rbsB; ribose transport system substrate-binding protein
D YPA_0307 putative sugar transport system permease protein K10440 rbsC; ribose transport system permease protein
D YPA_1994 putative sugar transport system, permease protein K10440 rbsC; ribose transport system permease protein
D YPA_3791 sugar transport system permease protein K10440 rbsC; ribose transport system permease protein
D YPA_0306 putative sugar transport ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D YPA_1995 putative sugar transport system, ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D YPA_3792 sugar transport ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D YPA_0010 ribose permease K06726 rbsD; D-ribose pyranase [EC:5.4.99.62]
D YPA_1615 L-arabinose-binding periplasmic protein precursor K10537 araF; L-arabinose transport system substrate-binding protein
D YPA_1617 L-arabinose transport system permease protein K10538 araH; L-arabinose transport system permease protein
D YPA_1616 L-arabinose transport ATP-binding protein K10539 araG; L-arabinose transport system ATP-binding protein [EC:7.5.2.12]
D YPA_0114 putative periplasmic protein precursor K23508 ytfQ; galactofuranose transport system substrate-binding protein
D YPA_0117 putative sugar transport system permease K23509 ytfT; galactofuranose transport system permease protein
D YPA_0116 putative sugar transport system permease K23509 ytfT; galactofuranose transport system permease protein
D YPA_0115 putative sugar transport system ATP-binding protein K10820 ytfR; galactofuranose transport system ATP-binding protein [EC:7.5.2.9]
D YPA_0802 galactose-binding protein K10540 mglB; methyl-galactoside transport system substrate-binding protein
D YPA_0804 galactoside permease K10541 mglC; methyl-galactoside transport system permease protein
D YPA_0803 galactoside transport ATP-binding protein K10542 mglA; methyl-galactoside transport system ATP-binding protein [EC:7.5.2.11]
D YPA_4127 sugar-binding periplasmic protein K10543 xylF; D-xylose transport system substrate-binding protein
D YPA_4125 sugar transport system permease protein K10544 xylH; D-xylose transport system permease protein
D YPA_4126 sugar transport ATP-binding protein K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10]
D YPA_2826 putative sugar ABC transporter, periplasmic protein K17202 eryG; erythritol transport system substrate-binding protein
D YPA_2829 putative sugar ABC transporter, permease protein K17203 eryF; erythritol transport system permease protein
D YPA_2828 putative sugar ABC transporter, ATP-binding protein K17204 eryE; erythritol transport system ATP-binding protein
D YPA_0410 sugar-binding periplasmic protein K17205 xltC; putative xylitol transport system substrate-binding protein
D YPA_0411 sugar transport system permease K17206 xltB; putative xylitol transport system permease protein
D YPA_0412 sugar transport ATP-binding protein K17207 xltA; putative xylitol transport system ATP-binding protein
D YPA_2520 putative sugar-binding periplasmic protein K17208 ibpA; inositol transport system substrate-binding protein
D YPA_2518 sugar transport system permease protein K17209 iatP; inositol transport system permease protein
D YPA_2519 sugar transport ATP-binding protein K17210 iatA; inositol transport system ATP-binding protein
D YPA_0228 glycerol-3-phosphate-binding periplasmic protein K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein
D YPA_0229 sn-glycerol-3-phosphate transport system, permease protein K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein
D YPA_0230 sn-glycerol-3-phosphate transport system, permease protein K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein
D YPA_0231 sn-glycerol-3-phosphate transport, ATP-binding protein K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10]
D YPA_2696 phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein
D YPA_4162 putative phosphate-binding periplasmic protein K02040 pstS; phosphate transport system substrate-binding protein
D YPA_2272 putative phosphate transport system permease K02037 pstC; phosphate transport system permease protein
D YPA_4161 putative phosphate transport system permease K02037 pstC; phosphate transport system permease protein
D YPA_2271 putative phosphate transport system permease K02038 pstA; phosphate transport system permease protein
D YPA_4160 putative phosphate transport system permease K02038 pstA; phosphate transport system permease protein
D YPA_2270 putative phosphate transport ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D YPA_4159 putative phosphate transport ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D YPA_0895 putative substrate-binding periplasmic transport protein K02044 phnD; phosphonate transport system substrate-binding protein
D YPA_0896 putative ABC transport membrane permease K02042 phnE; phosphonate transport system permease protein
D YPA_0897 putative ABC transport membrane permease K02042 phnE; phosphonate transport system permease protein
D YPA_0894 putative ABC transport ATP-binding subunit K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D YPA_2066 histidine transport system permease protein HisM K10015 hisM; histidine transport system permease protein
D YPA_2067 histidine transport system permease protein HisQ K10016 hisQ; histidine transport system permease protein
D YPA_2065 histidine transport ATP-binding protein HisP K10017 hisP; histidine transport system ATP-binding protein [EC:7.4.2.1]
D YPA_2068 histidine-binding periplasmic protein K10014 hisJ; histidine transport system substrate-binding protein
D YPA_2004 putative glutamine-binding periplasmic protein K10036 glnH; glutamine transport system substrate-binding protein
D YPA_2005 putative glutamine transport system permease K10037 glnP; glutamine transport system permease protein
D YPA_2006 putative glutamine transport ATP-binding protein K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1]
D YPA_0627 hypothetical protein K09996 artJ; arginine transport system substrate-binding protein
D YPA_0638 arginine-binding periplasmic protein 1 precursor K09997 artI; arginine transport system substrate-binding protein
D YPA_0636 arginine transport system permease protein K09998 artM; arginine transport system permease protein
D YPA_0637 arginine transport system permease protein K09999 artQ; arginine transport system permease protein
D YPA_0639 arginine transport ATP-binding protein K10000 artP; arginine transport system ATP-binding protein [EC:7.4.2.1]
D YPA_2482 putative amino acid-binding protein precursor K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D YPA_2484 putative glutamate/aspartate transport system permease K10002 gltK; glutamate/aspartate transport system permease protein
D YPA_2483 putative glutamate/aspartate transport system permease K10003 gltJ; glutamate/aspartate transport system permease protein
D YPA_2485 putative glutamate/aspartate transport ATP-binding protein K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1]
D YPA_1222 putative cystine-binding periplasmic protein K02424 tcyA; L-cystine transport system substrate-binding protein
D YPA_1223 putative amino-acid ABC transporter (permease) K10009 tcyB; L-cystine transport system permease protein
D YPA_1224 putative amino-acid ABC transporter (ATP-binding protein) K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D YPA_0214 branched-chain amino acid-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D YPA_0217 high-affinity branched-chain amino acid transport system, permease protein K01997 livH; branched-chain amino acid transport system permease protein
D YPA_0218 high-affinity branched-chain amino acid transport system, permease protein K01998 livM; branched-chain amino acid transport system permease protein
D YPA_0219 high-affinity branched-chain amino acid transport, ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D YPA_0220 high-affinity branched-chain amino acid transport, ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D YPA_1034 hypothetical protein K02073 metQ; D-methionine transport system substrate-binding protein
D YPA_0548 putative lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein
D YPA_1036 putative ABC transport integral membrane subunit K02072 metI; D-methionine transport system permease protein
D YPA_0549 ABC transporter permease protein K02072 metI; D-methionine transport system permease protein
D YPA_0550 ABC transporter ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein
D YPA_1035 putative ABC transport ATP-binding subunit K02071 metN; D-methionine transport system ATP-binding protein
D YPA_0899 putative substrate-binding periplasmic transport protein K11959 urtA; urea transport system substrate-binding protein
D YPA_0900 putative Branched-chain amino acid transport system, permease component K11960 urtB; urea transport system permease protein
D YPA_0901 putative Branched-chain amino acid transport system, permease component K11961 urtC; urea transport system permease protein
D YPA_0902 putative ABC transport ATP-binding subunit K11962 urtD; urea transport system ATP-binding protein
D YPA_0903 putative ABC transport ATP-binding subunit K11963 urtE; urea transport system ATP-binding protein
D YPA_1062 putative amino acid transporter K11963 urtE; urea transport system ATP-binding protein
D YPA_1539 periplasmic oligopeptide-binding protein precursor K15580 oppA; oligopeptide transport system substrate-binding protein
D YPA_1688 putative periplasmic murein peptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D YPA_1540 oligopeptide transport system permease protein K15581 oppB; oligopeptide transport system permease protein
D YPA_1541 oligopeptide transport system permease protein K15582 oppC; oligopeptide transport system permease protein
D YPA_1542 oligopeptide transport ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein
D YPA_1543 oligopeptide transport ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D YPA_3830 periplasmic dipeptide transport protein K12368 dppA; dipeptide transport system substrate-binding protein
D YPA_3829 dipeptide transport system permease protein K12369 dppB; dipeptide transport system permease protein
D YPA_3828 dipeptide transport system permease protein K12370 dppC; dipeptide transport system permease protein
D YPA_3827 dipeptide transport ATP-binding protein K12371 dppD; dipeptide transport system ATP-binding protein
D YPA_3826 dipeptide transport ATP-binding protein K12372 dppF; dipeptide transport system ATP-binding protein
D YPA_1704 peptide transport periplasmic protein precursor K19226 sapA; cationic peptide transport system substrate-binding protein
D YPA_1705 peptide transport system permease protein K19227 sapB; cationic peptide transport system permease protein
D YPA_1706 peptide transport system permease protein K19228 sapC; cationic peptide transport system permease protein
D YPA_1707 peptide transport system ATP-binding protein K19229 sapD; cationic peptide transport system ATP-binding protein
D YPA_1708 peptide transport system ATP-binding protein K19230 sapF; cationic peptide transport system ATP-binding protein
D YPA_0991 putative substrate-binding transport protein K13893 yejA; microcin C transport system substrate-binding protein
D YPA_0990 putative ABC transporter integral membrane subunit K13894 yejB; microcin C transport system permease protein
D YPA_0989 putative ABC transporter integral membrane subunit K13895 yejE; microcin C transport system permease protein
D YPA_0988 putative ABC transporter ATP-binding subunit K13896 yejF; microcin C transport system ATP-binding protein
D YPA_3092 periplasmic binding protein K23185 fepB; ferric enterobactin transport system substrate-binding protein
D YPA_0830 putative iron-siderophore transport system, periplasmic binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein
D YPA_0829 putative iron-siderophore transport system, transmembrane component K23186 fepD; iron-siderophore transport system permease protein
D YPA_0828 putative iron-siderophore transport system, membrane permease component K23187 fepG; iron-siderophore transport system permease protein
D YPA_0827 putative iron-siderophore transport system, ATP-binding component K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-]
D YPA_2891 ferrichrome-binding periplasmic protein precursor K23227 fhuD; ferric hydroxamate transport system substrate-binding protein
D YPA_2890 ferrichrome transport system permease protein FhuB K23228 fhuB; ferric hydroxamate transport system permease protein
D YPA_2892 ferrichrome transport ATP-binding protein FhuC K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16]
D YPA_2884 putative priplasmic metal binding protein K06858 btuF; vitamin B12 transport system substrate-binding protein
D YPA_1769 puative vitamin B12 transport system permease protein K06073 btuC; vitamin B12 transport system permease protein
D YPA_1767 putative vitamin B12 transport ATP-binding protein K06074 btuD; vitamin B12 transport system ATP-binding protein [EC:7.6.2.8]
D YPA_1444 exported high-affinity zinc uptake system protein K09815 znuA; zinc transport system substrate-binding protein
D YPA_1442 high-affinity zinc uptake system membrane protein K09816 znuB; zinc transport system permease protein
D YPA_1443 high-affinity zinc uptake system ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D YPA_1783 periplasmic-binding protein K11604 sitA; manganese/iron transport system substrate-binding protein
D YPA_1785 chelated iron transport system membrane protein K11605 sitC; manganese/iron transport system permease protein
D YPA_1786 chelated iron transport system membrane protein K11606 sitD; manganese/iron transport system permease protein
D YPA_1784 ATP-binding transport protein K11607 sitB; manganese/iron transport system ATP-binding protein
D YPA_3876 putative periplasmic solute-binding protein K10555 lsrB; AI-2 transport system substrate-binding protein
D YPA_3874 putative ABC transporter permease protein K10556 lsrC; AI-2 transport system permease protein
D YPA_3875 putative ABC transporter permease protein K10557 lsrD; AI-2 transport system permease protein
D YPA_3873 putative ABC transporter ATP-binding protein K10558 lsrA; AI-2 transport system ATP-binding protein
D YPA_1899 lipoprotein releasing system, transmembrane protein K09808 lolC_E; lipoprotein-releasing system permease protein
D YPA_1897 lipoprotein releasing system, transmembrane protein K09808 lolC_E; lipoprotein-releasing system permease protein
D YPA_1898 lipoprotein releasing system, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D YPA_1416 putative ABC transporter, ATP-binding subunit K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D YPA_2107 putative heme exporter protein D K02196 ccmD; heme exporter protein D
D YPA_2108 putative heme exporter protein C K02195 ccmC; heme exporter protein C
D YPA_2109 heme exporter protein B K02194 ccmB; heme exporter protein B
D YPA_2110 putative heme exporter protein A K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D YPA_2941 putative membrane protein K07091 lptF; lipopolysaccharide export system permease protein
D YPA_2940 putative membrane protein K11720 lptG; lipopolysaccharide export system permease protein
D YPA_3722 ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D YPA_0210 cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D YPA_0209 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D YPA_1291 lipoprotein inner membrane ABC-transporter K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D YPA_3379 ABC-transporter transmembrane protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D YPA_1292 inner membrane ABC-transporter YbtQ K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D YPA_3380 ABC-transporter transmembrane protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D YPA_0686 transport ATP-binding protein K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D YPA_2640 ABC transporter (ATP-binding protein) K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D YPA_2639 ATP transporter (ATP-binding protein) K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D YPA_3447 colicin V processing peptidase. Cysteine peptidase. MEROPS family C39 K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB
D YPA_2511 putative ABC transport protein K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter
D YPA_0102 ABC transporter protein K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D YPA_0662 transport ATP-binding protein K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D YPA_0663 transport ATP-binding protein K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D YPA_0655 putative ABC transporter ATP-binding protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D YPA_2190 putative ABC transporter, ATP-binding protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
C 02060 Phosphotransferase system (PTS) [PATH:ypa02060]
D YPA_2184 phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D YPA_2183 PTS system, phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr
D YPA_2185 PTS system, glucose-specific IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D YPA_1917 PTS system, glucose-specific IIBC component K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199]
D YPA_2469 pts system, N-acetylglucosamine-specific IIABC component K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D YPA_3710 PTS system, trehalose-specific IIBC component K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201]
D YPA_3014 PTS system, mannitol-specific IIABC component K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]
D YPA_2409 PTS system, cellobiose-specific IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D YPA_2407 PTS system, cellobiose-specific IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D YPA_2408 PTS system, cellobiose-specific IIC component K02761 celB; cellobiose PTS system EIIC component
D YPA_1130 PTS system, mannose-specific IIAB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D YPA_1129 PTS system, mannose-specific IIC component K02795 manY; mannose PTS system EIIC component
D YPA_1128 PTS system, mannose-specific IID component K02796 manZ; mannose PTS system EIID component
D YPA_0433 putative PTS permease protein K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-]
D YPA_0436 putative PTS transport protein K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-]
D YPA_0435 putative PTS permease protein K02746 agaW; N-acetylgalactosamine PTS system EIIC component
D YPA_0434 putative PTS permease protein K02747 agaE; N-acetylgalactosamine PTS system EIID component
D YPA_2058 phosphotransferase enzyme II, A component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D YPA_2059 hypothetical protein K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D YPA_2060 putative membrane protein K03475 ulaA; ascorbate PTS system EIIC component
D YPA_1015 hypothetical protein K11183 fruB; multiphosphoryl transfer protein [EC:2.7.1.202]
D YPA_1017 PTS system, fructose-specific IIBC component K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D YPA_1016 fructose-1-phosphate kinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D YPA_0483 phosphoenolpyruvate-protein phosphotransferase K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
D YPA_3716 putative phosphocarrier protein K08485 ptsO; phosphocarrier protein NPr
D YPA_3718 nitrogen regulatory IIA protein K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
C 03070 Bacterial secretion system [PATH:ypa03070]
D YPA_3129 ABC-transporter outer membrane component K12340 tolC; outer membrane protein
D YPA_CD0010 type III secretion protein K03221 yscF; type III secretion protein F
D YPA_4023 putative type III secretion apparatus K03221 yscF; type III secretion protein F
D YPA_CD0021 type III secretion protein K04056 yscO; type III secretion protein O
D YPA_CD0020 type III secretion protein K04057 yscP; type III secretion protein P
D YPA_CD0026 type III secretion protein K04059 yscX; type III secretion protein X
D YPA_CD0012 type III secretion protein K03219 yscC; type III secretion protein C
D YPA_4027 type III secretion protein K03219 yscC; type III secretion protein C
D YPA_CD0023 type III secretion outer membrane protein PopN K04058 yscW; type III secretion protein W
D YPA_CD0006 type III secretion lipoprotein K03222 yscJ; type III secretion protein J
D YPA_4020 type III secretion system apparatus lipoprotein K03222 yscJ; type III secretion protein J
D YPA_4012 putative type III secretion apparatus protein K03226 yscR; type III secretion protein R
D YPA_CD0018 Yop secretion membrane protein K03226 yscR; type III secretion protein R
D YPA_CD0017 type III secretion protein K03227 yscS; type III secretion protein S
D YPA_4011 putative type III secretion apparatus protein K03227 yscS; type III secretion protein S
D YPA_CD0016 type III secretion protein K03228 yscT; type III secretion protein T
D YPA_4010 putative type III secretion apparatus protein K03228 yscT; type III secretion protein T
D YPA_CD0015 type III secretion protein K03229 yscU; type III secretion protein U
D YPA_4009 putative type III secretion apparatus protein K03229 yscU; type III secretion protein U
D YPA_4017 secretion system apparatus protein K03230 yscV; type III secretion protein V
D YPA_CD0028 membrane-bound Yop protein K03230 yscV; type III secretion protein V
D YPA_CD0022 type III secretion system ATPase, FliI/YscN K03224 yscN; ATP synthase in type III secretion protein N [EC:7.4.2.8]
D YPA_4016 putative type III secretion system ATP synthase K03224 yscN; ATP synthase in type III secretion protein N [EC:7.4.2.8]
D YPA_CD0019 type III secretion protein K03225 yscQ; type III secretion protein Q
D YPA_4013 type III secretion system apparatus protein K03225 yscQ; type III secretion protein Q
D YPA_CD0004 type III secretion protein K03223 yscL; type III secretion protein L
D YPA_0453 general secretion pathway protein D K02453 gspD; general secretion pathway protein D
D YPA_0464 putative lipoprotein K02465 gspS; general secretion pathway protein S
D YPA_0452 general secretion pathway protein C K02452 gspC; general secretion pathway protein C
D YPA_0455 putative general protein secretion protein K02455 gspF; general secretion pathway protein F
D YPA_0456 general secretion pathway protein G K02456 gspG; general secretion pathway protein G
D YPA_0457 hypothetical protein K02457 gspH; general secretion pathway protein H
D YPA_0458 general secretion pathway protein I K02458 gspI; general secretion pathway protein I
D YPA_0459 general secretion pathway protein J K02459 gspJ; general secretion pathway protein J
D YPA_0460 general secretion pathway protein K K02460 gspK; general secretion pathway protein K
D YPA_0461 general secretion pathway protein L K02461 gspL; general secretion pathway protein L
D YPA_0454 general secretion pathway protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D YPA_0463 type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A K02464 gspO; general secretion pathway protein O [EC:3.4.23.43 2.1.1.-]
D YPA_2684 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D YPA_2683 protein translocase subunit secF K03074 secF; preprotein translocase subunit SecF
D YPA_3625 protein translocase subunit secE/sec61 gamma K03073 secE; preprotein translocase subunit SecE
D YPA_0049 protein translocase subunit secG K03075 secG; preprotein translocase subunit SecG
D YPA_3243 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY
D YPA_2685 protein translocase subunit yajC K03210 yajC; preprotein translocase subunit YajC
D YPA_4147 protein translocase subunit yidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D YPA_3537 protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D YPA_3538 hypothetical protein K13301 secM; secretion monitor
D YPA_0208 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D YPA_3475 protein translocase subunit secB K03071 secB; preprotein translocase subunit SecB
D YPA_2848 signal recognition particle subunit FFH/SRP54 (srp54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D YPA_0246 Sec-independent protein translocase protein TatA K03116 tatA; sec-independent protein translocase protein TatA
D YPA_0247 Sec-independent protein translocase TatB K03117 tatB; sec-independent protein translocase protein TatB
D YPA_0248 Sec-independent protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC
D YPA_2502 sec-independent protein translocase protein K03425 tatE; sec-independent protein translocase protein TatE
D YPA_1426 putative hemolysin activator protein K11017 shlB; hemolysin activation/secretion protein
D YPA_0023 hemolysin activator protein K11017 shlB; hemolysin activation/secretion protein
D YPA_0022 hemolysin K11016 shlA; hemolysin
D YPA_1427 putative hemolysin K11016 shlA; hemolysin
D YPA_CD0062 conserved hypothetical protein K12341 yadA; adhesin YadA
D YPA_0678 hypothetical protein K12342 yadB_C; adhesin YadB/C
D YPA_0679 hypothetical protein K12342 yadB_C; adhesin YadB/C
D YPA_3386 hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG
D YPA_0766 hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG
D YPA_0291 hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG
D YPA_2120 hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG
D YPA_3418 putative Rhs accessory genetic element K11904 vgrG; type VI secretion system secreted protein VgrG
D YPA_3409 putative Rhs accessory genetic element K11904 vgrG; type VI secretion system secreted protein VgrG
D YPA_3589 hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG
D YPA_0036 hypothetical protein K11903 hcp; type VI secretion system secreted protein Hcp
D YPA_2128 hypothetical protein K11903 hcp; type VI secretion system secreted protein Hcp
D YPA_0289 hypothetical protein K11903 hcp; type VI secretion system secreted protein Hcp
D YPA_3594 hypothetical protein K11903 hcp; type VI secretion system secreted protein Hcp
D YPA_0764 hypothetical protein K11903 hcp; type VI secretion system secreted protein Hcp
D YPA_3399 putative lipoprotein K11906 vasD; type VI secretion system protein VasD
D YPA_0783 hypothetical protein K11906 vasD; type VI secretion system protein VasD
D YPA_2127 hypothetical protein K11906 vasD; type VI secretion system protein VasD
D YPA_3583 putative lipoprotein K11906 vasD; type VI secretion system protein VasD
D YPA_2121 putative membrane protein K11891 impL; type VI secretion system protein ImpL
D YPA_3406 hypothetical protein K11891 impL; type VI secretion system protein ImpL
D YPA_0776 putative membrane protein K11891 impL; type VI secretion system protein ImpL
D YPA_3580 putative membrane protein K11891 impL; type VI secretion system protein ImpL
D YPA_3401 putative membrane protein K11892 impK; type VI secretion system protein ImpK
D YPA_2122 putative OmpA family protein K11892 impK; type VI secretion system protein ImpK
D YPA_0287 putative membrane protein K11892 impK; type VI secretion system protein ImpK
D YPA_0762 putative membrane protein K11892 impK; type VI secretion system protein ImpK
D YPA_3581 putative OmpA-family membrane protein K11892 impK; type VI secretion system protein ImpK
D YPA_2125 hypothetical protein K11892 impK; type VI secretion system protein ImpK
D YPA_0765 putative ATPase subunit of ATP-dependent protease K11907 vasG; type VI secretion system protein VasG
D YPA_2137 Clp ATPase K11907 vasG; type VI secretion system protein VasG
D YPA_3402 Clp ATPase K11907 vasG; type VI secretion system protein VasG
D YPA_3590 putative Clp ATPase K11907 vasG; type VI secretion system protein VasG
D YPA_0290 Clp ATPase K11907 vasG; type VI secretion system protein VasG
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:ypa02020]
D YPA_2697 PAS/PAC sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D YPA_2698 phosphate regulon transcriptional regulatory protein K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D YPA_2198 putative two-component response regulator K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D YPA_1647 alkaline phosphatase precursor K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D YPA_2696 phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein
D YPA_4162 putative phosphate-binding periplasmic protein K02040 pstS; phosphate transport system substrate-binding protein
D YPA_1891 sensor protein kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D YPA_1890 response regulator protein K07660 phoP; two-component system, OmpR family, response regulator PhoP
D YPA_3332 osmolarity sensor protein K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D YPA_3333 transcriptional regulatory protein K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D YPA_0936 outer membrane protein C, porin K09475 ompC; outer membrane pore protein C
D YPA_0705 putative outer membrane porin C protein K09476 ompF; outer membrane pore protein F
D YPA_3470 two component sensor kinase K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D YPA_3469 two component system response regulatory protein K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D YPA_3215 putative membrane protein K25864 mzrA; modulator protein MzrA
D YPA_1657 two-component regulatory system, sensor kinase protein K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3]
D YPA_1656 two-component regulatory system, response regulator protein K07661 rstA; two-component system, OmpR family, response regulator RstA
D YPA_2881 global stress requirement protein GsrA K04771 degP; serine protease Do [EC:3.4.21.107]
D YPA_0374 putative histidine kinase sensor K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3]
D YPA_0373 putative response regulator K07663 creB; two-component system, OmpR family, catabolic regulation response regulator CreB
D YPA_2290 hypothetical protein K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3]
D YPA_2292 two-component system response regulator K07664 baeR; two-component system, OmpR family, response regulator BaeR
D YPA_2286 putitive HlyD family secretion protein K07799 mdtA; membrane fusion protein, multidrug efflux system
D YPA_2287 AcrB/AcrD/AcrF family membrane protein K07788 mdtB; multidrug efflux pump
D YPA_2288 AcrB/AcrD/AcrF family membrane protein K07789 mdtC; multidrug efflux pump
D YPA_2289 putative membrane protein K18326 mdtD; MFS transporter, DHA2 family, multidrug resistance protein
D YPA_2234 multidrug efflux protein K18324 acrD; multidrug efflux pump
D YPA_0058 two-component system sensor protein K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3]
D YPA_0057 two-component system response regulator K07771 basR; two-component system, OmpR family, response regulator BasR
D YPA_1766 conserved hypothetical protein K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87]
D YPA_1382 putative two-component system sensor protein K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D YPA_1383 transcriptional activator K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
D YPA_1859 hypothetical protein K02403 flhD; flagellar transcriptional activator FlhD
D YPA_1858 flagellum biosynthesis transcription activator K02402 flhC; flagellar transcriptional activator FlhC
D YPA_3051 putative flagellin K02406 fliC; flagellin
D YPA_3052 putative flagellin K02406 fliC; flagellin
D YPA_3053 putative flagellin K02406 fliC; flagellin
D YPA_1218 thermoregulated motility protein K02406 fliC; flagellin
D YPA_3045 putative RNA polymerase sigma factor for flagellar operon K02405 fliA; RNA polymerase sigma factor FliA
D YPA_1219 RNA polymerase sigma factor for flagellar operon K02405 fliA; RNA polymerase sigma factor FliA
D YPA_3044 putative flagellar motor transmembrane channel protein K02556 motA; chemotaxis protein MotA
D YPA_1857 chemotaxis MotA protein K02556 motA; chemotaxis protein MotA
D YPA_2419 two-component regulatory protein sensor kinase KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D YPA_2418 two-component regulatory protein response regulator KdpE K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D YPA_2422 putative potassium-transporting ATPase A chain K01546 kdpA; potassium-transporting ATPase potassium-binding subunit
D YPA_2421 putative potassium-transporting ATPase B chain K01547 kdpB; potassium-transporting ATPase ATP-binding subunit [EC:7.2.2.6]
D YPA_2420 putative potassium-transporting ATPase C chain K01548 kdpC; potassium-transporting ATPase KdpC subunit
D YPA_2423 K+-transporting ATPase, F subunit K01545 kdpF; potassium-transporting ATPase KdpF subunit
D YPA_3748 PAS/PAC sensor hybrid histidine kinase K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D YPA_4049 aerobic respiration control protein K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA
D YPA_4143 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D YPA_2855 putative Dcu family, anaerobic C4-dicarboxylate transporter K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D YPA_2856 putative Dcu family, anaerobic C4-dicarboxylate transporter K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D YPA_2857 hypothetical protein K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D YPA_0806 NAD-dependent malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D YPA_1342 nitrate/nitrite sensor protein K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3]
D YPA_2232 nitrate/nitrite response regulator protein NarP K07685 narP; two-component system, NarL family, nitrate/nitrite response regulator NarP
D YPA_3923 succinate dehydrogenase subunit A K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D YPA_3924 succinate dehydrogenase subunit B K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D YPA_3925 fumarate reductase hydrophobic protein K00246 frdC; succinate dehydrogenase subunit C
D YPA_3926 succinate dehydrogenase subunit D K00247 frdD; succinate dehydrogenase subunit D
D YPA_3834 putative regulatory protein K07783 uhpC; MFS transporter, OPA family, sugar phosphate sensor protein UhpC
D YPA_3835 ATP-binding region, ATPase-like K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D YPA_4099 hypothetical protein K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D YPA_4100 two-component system response regulator K07686 uhpA; two-component system, NarL family, uhpT operon response regulator UhpA
D YPA_0872 putative GerR-family transcriptional regulatory protein K20264 fusR; two-component system, NarL family, response regulator FusR
D YPA_0547 putative lipoprotein K06080 rcsF; RcsF protein
D YPA_0931 two component sensor kinase/response regulator protein RcsC K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]
D YPA_0933 putative two-component sensor protein like yojN K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3]
D YPA_0934 hypothetical protein K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3]
D YPA_0932 two component response regulator component B K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB
D YPA_2880 Hpt sensor hybrid histidine kinase K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D YPA_1243 response regulator protein K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D YPA_1302 signal transduction histidine kinase K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3]
D YPA_1303 putative two-component response regulator K07688 fimZ; two-component system, NarL family, response regulator, fimbrial Z protein, FimZ
D YPA_1822 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D YPA_1826 putative membrane protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D YPA_1823 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D YPA_1821 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D YPA_1810 putative chaperone protein K07346 fimC; fimbrial chaperone protein
D YPA_1824 putative chaperone protein K07346 fimC; fimbrial chaperone protein
D YPA_0141 putative fimbrial chaperone K07346 fimC; fimbrial chaperone protein
D YPA_1812 putative outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPA_1825 outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPA_0140 putative outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPA_1022 outer membrane usher protein PsaC precursor K07347 fimD; outer membrane usher protein
D YPA_MT0069 F1 capsule anchoring protein K07347 fimD; outer membrane usher protein
D YPA_1298 fimbrial usher protein K07347 fimD; outer membrane usher protein
D YPA_2134 hypothetical protein K07347 fimD; outer membrane usher protein
D YPA_3098 putative membrane protein K02279 cpaB; pilus assembly protein CpaB
D YPA_3099 hypothetical protein K02280 cpaC; pilus assembly protein CpaC
D YPA_3101 hypothetical protein K02282 cpaE; pilus assembly protein CpaE
D YPA_3102 putative type II secretion protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D YPA_3103 putative membrane protein K12510 tadB; tight adherence protein B
D YPA_3104 hypothetical protein K12511 tadC; tight adherence protein C
D YPA_0516 (protein-PII) uridylyltransferase K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]
D YPA_2351 nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1
D YPA_3519 PAS/PAC sensor signal transduction histidine kinase K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D YPA_3520 nitrogen regulation protein K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D YPA_3517 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D YPA_1084 PAS/PAC sensor signal transduction histidine kinase K07709 zraS; two-component system, NtrC family, sensor histidine kinase HydH [EC:2.7.13.3]
D YPA_1085 Helix-turn-helix, Fis-type K07713 zraR; two-component system, NtrC family, response regulator HydG
D YPA_1083 conserved hypothetical protein K07803 zraP; zinc resistance-associated protein
D YPA_3820 C4-dicarboxylate transport protein K11103 dctA; aerobic C4-dicarboxylate transport protein
D YPA_3721 RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D YPA_2355 two-component system sensor kinase K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D YPA_2353 two-component system response regulator K07715 glrR; two-component system, NtrC family, response regulator GlrR
D YPA_r060 tke1 RNA K15841 glmY; small regulatory RNA GlmY
D YPA_1844 chemotaxis protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D YPA_2007 putative chemotactic transducer K03406 mcp; methyl-accepting chemotaxis protein
D YPA_0943 putative methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D YPA_1846 methyl-accepting chemotaxis protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D YPA_0467 putative methyl-accepting chemotaxis protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D YPA_3023 methyl-accepting chemotaxis protein II K05875 tar; methyl-accepting chemotaxis protein II, aspartate sensor receptor
D YPA_1862 hypothetical protein K05876 trg; methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor
D YPA_1863 methyl-accepting chemotaxis protein III (MCP-III) K05876 trg; methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor
D YPA_1845 hypothetical protein K05877 tap; methyl-accepting chemotaxis protein IV, peptide sensor receptor
D YPA_1880 putative methyl-accepting chemotaxis protein K03776 aer; aerotaxis receptor
D YPA_1854 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D YPA_1855 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D YPA_1842 chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D YPA_1843 protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D YPA_4028 two-component sensor/regulator K14978 ssrA; two-component system, LuxR family, secretion system sensor histidine kinase SsrA
D YPA_4029 putative two-component response regulator K14979 ssrB; two-component system, LuxR family, secretion system response regulator SsrB
D YPA_3080 sigma-54 transcriptional regulatory protein K10943 flrC; two-component system, response regulator FlrC
D YPA_2485 putative glutamate/aspartate transport ATP-binding protein K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1]
D YPA_2484 putative glutamate/aspartate transport system permease K10002 gltK; glutamate/aspartate transport system permease protein
D YPA_2483 putative glutamate/aspartate transport system permease K10003 gltJ; glutamate/aspartate transport system permease protein
D YPA_2482 putative amino acid-binding protein precursor K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D YPA_3297 cAMP-regulatory protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D YPA_0315 L-glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D YPA_1322 L-glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D YPA_0595 cytochrome D ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D YPA_0596 cytochrome D ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D YPA_1608 hypothetical protein K12530 rtxB; ATP-binding cassette, subfamily B, bacterial RtxB
D YPA_1610 hypothetical protein K12532 rtxD; membrane fusion protein, RTX toxin transport system
D YPA_1612 putative toxin transport protein K12531 rtxE; ATP-binding cassette, subfamily B, bacterial RtxE
D YPA_3129 ABC-transporter outer membrane component K12340 tolC; outer membrane protein
D YPA_0154 UDP-N-Acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D YPA_0155 putative UDP-glucose/GDP-mannose dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
D YPA_3861 putative pectinesterase K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11]
D YPA_3069 putative flagellar regulatory protein K02398 flgM; negative regulator of flagellin synthesis FlgM
D YPA_1172 negative regulator of flagellin synthesis K02398 flgM; negative regulator of flagellin synthesis FlgM
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
D YPA_0304 ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:ypa02024]
D YPA_2844 autoinducer-2 production protein K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D YPA_3911 RNA-binding protein Hfq K03666 hfq; host factor-I protein
D YPA_1568 anthranilate synthase, component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D YPA_1567 anthranilate synthase, component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D YPA_2859 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D YPA_0608 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D YPA_1755 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D YPA_2355 two-component system sensor kinase K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D YPA_2353 two-component system response regulator K07715 glrR; two-component system, NtrC family, response regulator GlrR
D YPA_1859 hypothetical protein K02403 flhD; flagellar transcriptional activator FlhD
D YPA_1858 flagellum biosynthesis transcription activator K02402 flhC; flagellar transcriptional activator FlhC
D YPA_2418 two-component regulatory protein response regulator KdpE K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D YPA_0872 putative GerR-family transcriptional regulatory protein K20264 fusR; two-component system, NarL family, response regulator FusR
D YPA_3876 putative periplasmic solute-binding protein K10555 lsrB; AI-2 transport system substrate-binding protein
D YPA_3874 putative ABC transporter permease protein K10556 lsrC; AI-2 transport system permease protein
D YPA_3875 putative ABC transporter permease protein K10557 lsrD; AI-2 transport system permease protein
D YPA_3873 putative ABC transporter ATP-binding protein K10558 lsrA; AI-2 transport system ATP-binding protein
D YPA_3869 putative carbohydrate kinase K11216 lsrK; autoinducer-2 kinase [EC:2.7.1.189]
D YPA_3870 putative transcriptional repressor K11531 lsrR; lsr operon transcriptional repressor
D YPA_3877 putative aldolase K08321 lsrF; 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase [EC:2.3.1.245]
D YPA_3878 hypothetical protein K11530 lsrG; (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase [EC:5.3.1.32]
D YPA_2021 hypothetical protein K20268 rhiA; rhizosphere induced protein
D YPA_2282 putative transport system periplasmic protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D YPA_1411 hypothetical protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D YPA_2280 putative ABC transporter permease K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D YPA_1412 putative binding-protein-dependent transport system membrane protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D YPA_2281 putative ABC transporter permease K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D YPA_1413 putative binding-protein-dependent transport system membrane protein K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D YPA_2285 putitive ABC-transporter ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D YPA_1414 hypothetical protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D YPA_0214 branched-chain amino acid-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D YPA_0217 high-affinity branched-chain amino acid transport system, permease protein K01997 livH; branched-chain amino acid transport system permease protein
D YPA_0218 high-affinity branched-chain amino acid transport system, permease protein K01998 livM; branched-chain amino acid transport system permease protein
D YPA_0219 high-affinity branched-chain amino acid transport, ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D YPA_0220 high-affinity branched-chain amino acid transport, ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D YPA_1954 N-acylhomoserine lactone synthase YpeI K22956 expI; acyl homoserine lactone synthase [EC:2.3.1.184]
D YPA_0280 N-acylhomoserine lactone synthase YspI K22956 expI; acyl homoserine lactone synthase [EC:2.3.1.184]
D YPA_1955 quorum-sensing transcriptional activator YpeR K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR
D YPA_0279 quorum-sensing transcriptional regulator K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR
D YPA_3822 periplasmic pectate lyase precursor K01728 pel; pectate lyase [EC:4.2.2.2]
D YPA_3561 putative AMP-binding enzyme-family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D YPA_1457 long-chain-fatty-acid-CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D YPA_3297 cAMP-regulatory protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D YPA_3969 zinc uptake regulator, Fur family K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D YPA_1581 GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D YPA_2677 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D YPA_2983 outer membrane efflux lipoprotein K18139 oprM; outer membrane protein, multidrug efflux system
D YPA_1539 periplasmic oligopeptide-binding protein precursor K15580 oppA; oligopeptide transport system substrate-binding protein
D YPA_1688 putative periplasmic murein peptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D YPA_1540 oligopeptide transport system permease protein K15581 oppB; oligopeptide transport system permease protein
D YPA_1541 oligopeptide transport system permease protein K15582 oppC; oligopeptide transport system permease protein
D YPA_1542 oligopeptide transport ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein
D YPA_1543 oligopeptide transport ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D YPA_2950 hypothetical protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D YPA_2951 ABC transporter, periplasmic oligo-dipeptide/nickel binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D YPA_2387 putative solute-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D YPA_2952 putative transporter, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D YPA_2388 putative membrane protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D YPA_2953 putative transporter, permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D YPA_2389 binding-protein-dependent transport protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D YPA_2954 putative ABC transporter transporter, ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D YPA_2390 putative transport ATPase K02031 ddpD; peptide/nickel transport system ATP-binding protein
D YPA_2955 putative ABC transporter, ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein
D YPA_2391 putative transport ATPase K02032 ddpF; peptide/nickel transport system ATP-binding protein
D YPA_4147 protein translocase subunit yidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D YPA_3625 protein translocase subunit secE/sec61 gamma K03073 secE; preprotein translocase subunit SecE
D YPA_0049 protein translocase subunit secG K03075 secG; preprotein translocase subunit SecG
D YPA_3243 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY
D YPA_2685 protein translocase subunit yajC K03210 yajC; preprotein translocase subunit YajC
D YPA_3537 protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D YPA_0208 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D YPA_3475 protein translocase subunit secB K03071 secB; preprotein translocase subunit SecB
D YPA_2848 signal recognition particle subunit FFH/SRP54 (srp54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:ypa02030]
D YPA_2007 putative chemotactic transducer K03406 mcp; methyl-accepting chemotaxis protein
D YPA_0943 putative methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D YPA_1846 methyl-accepting chemotaxis protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D YPA_0467 putative methyl-accepting chemotaxis protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D YPA_3023 methyl-accepting chemotaxis protein II K05875 tar; methyl-accepting chemotaxis protein II, aspartate sensor receptor
D YPA_1862 hypothetical protein K05876 trg; methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor
D YPA_1863 methyl-accepting chemotaxis protein III (MCP-III) K05876 trg; methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor
D YPA_1845 hypothetical protein K05877 tap; methyl-accepting chemotaxis protein IV, peptide sensor receptor
D YPA_1880 putative methyl-accepting chemotaxis protein K03776 aer; aerotaxis receptor
D YPA_0030 maltose-binding periplasmic protein precursor K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D YPA_0305 putative sugar ABC transporter periplasmic binding protein K10439 rbsB; ribose transport system substrate-binding protein
D YPA_1996 sugar binding protein precursor K10439 rbsB; ribose transport system substrate-binding protein
D YPA_3790 sugar-binding transport protein K10439 rbsB; ribose transport system substrate-binding protein
D YPA_0802 galactose-binding protein K10540 mglB; methyl-galactoside transport system substrate-binding protein
D YPA_3830 periplasmic dipeptide transport protein K12368 dppA; dipeptide transport system substrate-binding protein
D YPA_1855 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D YPA_1854 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D YPA_1842 chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D YPA_1841 chemotaxis protein CheZ K03414 cheZ; chemotaxis protein CheZ
D YPA_1843 protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D YPA_1844 chemotaxis protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D YPA_3074 puative flagellar motor switch protein K02410 fliG; flagellar motor switch protein FliG
D YPA_1205 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D YPA_3081 putative flagellar motor switch protein K02416 fliM; flagellar motor switch protein FliM
D YPA_3082 flagellar motor switch protein K02416 fliM; flagellar motor switch protein FliM
D YPA_1199 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D YPA_3083 flagellar switch protein K02417 fliN; flagellar motor switch protein FliN
D YPA_1198 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D YPA_3044 putative flagellar motor transmembrane channel protein K02556 motA; chemotaxis protein MotA
D YPA_1857 chemotaxis MotA protein K02556 motA; chemotaxis protein MotA
D YPA_3043 putative chemotaxis membrane protein K02557 motB; chemotaxis protein MotB
D YPA_1856 chemotaxis MotB protein K02557 motB; chemotaxis protein MotB
C 02040 Flagellar assembly [PATH:ypa02040]
D YPA_3079 putative flagellar hook-basal body complex protein K02408 fliE; flagellar hook-basal body complex protein FliE
D YPA_1207 flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D YPA_3078 putative flagellar M-ring protein K02409 fliF; flagellar M-ring protein FliF
D YPA_1206 flagellar M-ring protein K02409 fliF; flagellar M-ring protein FliF
D YPA_3074 puative flagellar motor switch protein K02410 fliG; flagellar motor switch protein FliG
D YPA_1205 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D YPA_3073 putative flagellar assembly protein K02411 fliH; flagellar assembly protein FliH
D YPA_1204 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D YPA_3072 putative flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D YPA_1203 flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D YPA_1202 flagellar protein FliJ K02413 fliJ; flagellar protein FliJ
D YPA_3047 putative flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK
D YPA_1201 flagellar hook-length control protein FliK K02414 fliK; flagellar hook-length control protein FliK
D YPA_3046 putative flagellar biogenesis protein K02415 fliL; flagellar protein FliL
D YPA_1200 flagellar protein FliL K02415 fliL; flagellar protein FliL
D YPA_3081 putative flagellar motor switch protein K02416 fliM; flagellar motor switch protein FliM
D YPA_3082 flagellar motor switch protein K02416 fliM; flagellar motor switch protein FliM
D YPA_1199 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D YPA_3083 flagellar switch protein K02417 fliN; flagellar motor switch protein FliN
D YPA_1198 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D YPA_1197 flagellar protein FliO K02418 fliO; flagellar protein FliO/FliZ
D YPA_3084 putative flagellar assembly protein K02419 fliP; flagellar biosynthesis protein FliP
D YPA_1196 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D YPA_3085 putative flagellar assembly protein K02420 fliQ; flagellar biosynthesis protein FliQ
D YPA_1195 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D YPA_3086 putative flagellar assembly protein K02421 fliR; flagellar biosynthesis protein FliR
D YPA_1194 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D YPA_1167 flagellar protein FlhE precursor K03516 flhE; flagellar protein FlhE
D YPA_3088 hypothetical protein K02400 flhA; flagellar biosynthesis protein FlhA
D YPA_1165 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D YPA_3087 putative flagellar assembly protein K02401 flhB; flagellar biosynthesis protein FlhB
D YPA_1164 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D YPA_3068 putative flagella basal body P-ring formation protein K02386 flgA; flagellar basal body P-ring formation protein FlgA
D YPA_1173 flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D YPA_3067 putative flagellar basal-body rod protein K02387 flgB; flagellar basal-body rod protein FlgB
D YPA_1174 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D YPA_3066 putative flagellar basal-body rod protein K02388 flgC; flagellar basal-body rod protein FlgC
D YPA_1175 flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D YPA_3065 putative basal-body rod modification protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D YPA_1176 basal-body rod modification protein FlgD K02389 flgD; flagellar basal-body rod modification protein FlgD
D YPA_3064 putative flagellar hook protein K02390 flgE; flagellar hook protein FlgE
D YPA_1177 flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE
D YPA_3063 hypothetical protein K02391 flgF; flagellar basal-body rod protein FlgF
D YPA_1178 flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D YPA_3062 putative flagellar basal-body rod protein K02392 flgG; flagellar basal-body rod protein FlgG
D YPA_1179 flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D YPA_3061 putative flagellar L-ring protein K02393 flgH; flagellar L-ring protein FlgH
D YPA_1180 flagellar L-ring protein precursor K02393 flgH; flagellar L-ring protein FlgH
D YPA_3060 putative flagellar P-ring protein K02394 flgI; flagellar P-ring protein FlgI
D YPA_1181 flagellar P-ring protein precursor K02394 flgI; flagellar P-ring protein FlgI
D YPA_3059 putative flagellar protein K02395 flgJ; peptidoglycan hydrolase FlgJ
D YPA_1182 flagellar protein FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ
D YPA_3058 putative flagellar hook-associated protein K02396 flgK; flagellar hook-associated protein 1
D YPA_1183 flagellar hook-associated protein 1 K02396 flgK; flagellar hook-associated protein 1
D YPA_3057 putative flagellar hook-associated protein K02397 flgL; flagellar hook-associated protein 3 FlgL
D YPA_1184 flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL
D YPA_3051 putative flagellin K02406 fliC; flagellin
D YPA_3052 putative flagellin K02406 fliC; flagellin
D YPA_3053 putative flagellin K02406 fliC; flagellin
D YPA_1218 thermoregulated motility protein K02406 fliC; flagellin
D YPA_3050 putative flagellar hook-associated protein K02407 fliD; flagellar hook-associated protein 2
D YPA_1217 flagellar hook-associated protein 2 K02407 fliD; flagellar hook-associated protein 2
D YPA_3049 putative flagellar protein K02422 fliS; flagellar secretion chaperone FliS
D YPA_1216 flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS
D YPA_1215 FliT K02423 fliT; flagellar protein FliT
D YPA_3044 putative flagellar motor transmembrane channel protein K02556 motA; chemotaxis protein MotA
D YPA_1857 chemotaxis MotA protein K02556 motA; chemotaxis protein MotA
D YPA_3043 putative chemotaxis membrane protein K02557 motB; chemotaxis protein MotB
D YPA_1856 chemotaxis MotB protein K02557 motB; chemotaxis protein MotB
D YPA_3069 putative flagellar regulatory protein K02398 flgM; negative regulator of flagellin synthesis FlgM
D YPA_1172 negative regulator of flagellin synthesis K02398 flgM; negative regulator of flagellin synthesis FlgM
D YPA_3070 hypothetical protein K02399 flgN; flagellar biosynthesis protein FlgN
D YPA_1171 flagella synthesis protein FlgN K02399 flgN; flagellar biosynthesis protein FlgN
D YPA_1222 putative cystine-binding periplasmic protein K02424 tcyA; L-cystine transport system substrate-binding protein
D YPA_1220 putative alternative sigma factor regulatory protein K02425 fliZ; regulator of sigma S factor FliZ
D YPA_3147 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D YPA_1859 hypothetical protein K02403 flhD; flagellar transcriptional activator FlhD
D YPA_1858 flagellum biosynthesis transcription activator K02402 flhC; flagellar transcriptional activator FlhC
D YPA_3721 RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D YPA_3080 sigma-54 transcriptional regulatory protein K10943 flrC; two-component system, response regulator FlrC
D YPA_3045 putative RNA polymerase sigma factor for flagellar operon K02405 fliA; RNA polymerase sigma factor FliA
D YPA_1219 RNA polymerase sigma factor for flagellar operon K02405 fliA; RNA polymerase sigma factor FliA
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D YPA_2874 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
D YPA_0021 methionine synthase (B12-dependent) K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection [PATH:ypa05135]
D YPA_3773 putative invasin K13735 yeeJ; adhesin/invasin
D YPA_1168 putative invasin K13735 yeeJ; adhesin/invasin
D YPA_CD0062 conserved hypothetical protein K12341 yadA; adhesin YadA
D YPA_CD0071 targeted effector protein kinase K23472 ypkA; serine/threonine protein kinase YpkA [EC:2.7.11.1]
D YPA_CD0042 YopT peptidase. Cysteine peptidase. MEROPS family C58 K08599 yopT; YopT peptidase [EC:3.4.22.-]
D YPA_CD0051 outer membrane virulence protein K23473 yopE; outer membrane virulence protein YopE
D YPA_CD0075 protein-tyrosine phosphatase Yop effector K23474 yopH; tyrosine-protein phosphatase YopH [EC:3.1.3.48]
D YPA_CD0032 Yop targeting protein K23475 yopB; transloator
D YPA_CD0033 Yop negative regulation/targeting component K23476 yopD; transloator
D YPA_CD0037 targeted effector protein K23478 yopM; outer membrane protein YopM
D YPA_CD0072 YopJ peptidase. Cysteine peptidase. MEROPS family C55 K08598 yopJ; YopJ protease family
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
D YPA_3773 putative invasin K13735 yeeJ; adhesin/invasin
D YPA_1168 putative invasin K13735 yeeJ; adhesin/invasin
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:ypa01501]
D YPA_0705 putative outer membrane porin C protein K09476 ompF; outer membrane pore protein F
D YPA_0936 outer membrane protein C, porin K09475 ompC; outer membrane pore protein C
D YPA_2656 Beta-lactamase induction signal transducer AmpG K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D YPA_1907 beta-N-acetylhexosaminidase. Glycosyl Hydrolase family 3 K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D YPA_1539 periplasmic oligopeptide-binding protein precursor K15580 oppA; oligopeptide transport system substrate-binding protein
D YPA_1688 putative periplasmic murein peptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D YPA_1540 oligopeptide transport system permease protein K15581 oppB; oligopeptide transport system permease protein
D YPA_1541 oligopeptide transport system permease protein K15582 oppC; oligopeptide transport system permease protein
D YPA_1542 oligopeptide transport ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein
D YPA_1543 oligopeptide transport ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D YPA_2985 multidrug efflux protein K03585 acrA; membrane fusion protein, multidrug efflux system
D YPA_2627 multidrug efflux protein K03585 acrA; membrane fusion protein, multidrug efflux system
D YPA_2628 multidrug efflux protein K18138 acrB; multidrug efflux pump
D YPA_2984 multidrug efflux protein K18138 acrB; multidrug efflux pump
D YPA_3357 putative integral membrane efflux protein K18138 acrB; multidrug efflux pump
D YPA_2983 outer membrane efflux lipoprotein K18139 oprM; outer membrane protein, multidrug efflux system
D YPA_3129 ABC-transporter outer membrane component K12340 tolC; outer membrane protein
D YPA_3325 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D YPA_2493 peptidoglycan glycosyltransferase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D YPA_3552 peptidoglycan synthetase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:ypa01502]
D YPA_3544 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D YPA_3964 alanine racemase (biosynthetic) K01775 alr; alanine racemase [EC:5.1.1.1]
D YPA_3550 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D YPA_3549 Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D YPA_3546 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:ypa01503]
D YPA_1891 sensor protein kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D YPA_1890 response regulator protein K07660 phoP; two-component system, OmpR family, response regulator PhoP
D YPA_4101 phosphatidylethanolamine:Kdo2-lipid A phosphoethanolamine transferase K12975 eptB; KDO II ethanolaminephosphotransferase [EC:2.7.8.42]
D YPA_1118 Antimicrobial peptide resistance and lipid A acylation PagP K12973 pagP; lipid IVA palmitoyltransferase [EC:2.3.1.251]
D YPA_1766 conserved hypothetical protein K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87]
D YPA_1765 glycosyl transferase K10012 arnC; undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [EC:2.4.2.53]
D YPA_1764 formyl transferase K10011 arnA; UDP-4-amino-4-deoxy-L-arabinose formyltransferase / UDP-glucuronic acid dehydrogenase (UDP-4-keto-hexauronic acid decarboxylating) [EC:2.1.2.13 1.1.1.305]
D YPA_1763 hypothetical protein K13014 arnD; undecaprenyl phosphate-alpha-L-ara4FN deformylase [EC:3.5.1.-]
D YPA_1762 dolichyl-phosphate-mannose-protein mannosyltransferase-family protein K07264 arnT; 4-amino-4-deoxy-L-arabinose transferase [EC:2.4.2.43]
D YPA_1761 putative membrane protein K12962 arnE; undecaprenyl phosphate-alpha-L-ara4N flippase subunit ArnE
D YPA_1760 putative membrane protein K12963 arnF; undecaprenyl phosphate-alpha-L-ara4N flippase subunit ArnF
D YPA_0058 two-component system sensor protein K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3]
D YPA_0057 two-component system response regulator K07771 basR; two-component system, OmpR family, response regulator BasR
D YPA_1723 putative membrane protein K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D YPA_1704 peptide transport periplasmic protein precursor K19226 sapA; cationic peptide transport system substrate-binding protein
D YPA_1705 peptide transport system permease protein K19227 sapB; cationic peptide transport system permease protein
D YPA_1706 peptide transport system permease protein K19228 sapC; cationic peptide transport system permease protein
D YPA_1707 peptide transport system ATP-binding protein K19229 sapD; cationic peptide transport system ATP-binding protein
D YPA_1708 peptide transport system ATP-binding protein K19230 sapF; cationic peptide transport system ATP-binding protein
D YPA_3800 metalloprotease K01406 prtC; serralysin [EC:3.4.24.40]
D YPA_0544 putative copper homeostasis lipoprotein K06079 cutF; copper homeostasis protein (lipoprotein)
D YPA_3470 two component sensor kinase K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D YPA_3469 two component system response regulatory protein K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D YPA_3914 putative N-acetylmuramoyl-L-alanine amidase-family protein K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D YPA_0495 N-acetylmuramoyl-L-alanine amidase AmiC precursor K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D YPA_1743 hypothetical protein K19236 ycfS; L,D-transpeptidase YcfS
D YPA_2881 global stress requirement protein GsrA K04771 degP; serine protease Do [EC:3.4.21.107]
D YPA_3526 secreted thiol:disulfide interchange protein DsbA K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D YPA_3302 peptidyl-prolyl cis-trans isomerase A K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D YPA_2985 multidrug efflux protein K03585 acrA; membrane fusion protein, multidrug efflux system
D YPA_2627 multidrug efflux protein K03585 acrA; membrane fusion protein, multidrug efflux system
D YPA_2628 multidrug efflux protein K18138 acrB; multidrug efflux pump
D YPA_2984 multidrug efflux protein K18138 acrB; multidrug efflux pump
D YPA_3357 putative integral membrane efflux protein K18138 acrB; multidrug efflux pump
D YPA_3129 ABC-transporter outer membrane component K12340 tolC; outer membrane protein
D YPA_0532 acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:ypa01000]
C 01001 Protein kinases [BR:ypa01001]
D YPA_1108 hypothetical protein K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D YPA_CD0071 targeted effector protein kinase K23472 ypkA; serine/threonine protein kinase YpkA [EC:2.7.11.1]
D YPA_2697 PAS/PAC sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D YPA_1891 sensor protein kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D YPA_3332 osmolarity sensor protein K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D YPA_1657 two-component regulatory system, sensor kinase protein K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3]
D YPA_3470 two component sensor kinase K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D YPA_0374 putative histidine kinase sensor K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3]
D YPA_2290 hypothetical protein K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3]
D YPA_0058 two-component system sensor protein K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3]
D YPA_1382 putative two-component system sensor protein K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D YPA_2419 two-component regulatory protein sensor kinase KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D YPA_3748 PAS/PAC sensor hybrid histidine kinase K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D YPA_2187 putative two-component system sensor kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D YPA_1342 nitrate/nitrite sensor protein K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3]
D YPA_3835 ATP-binding region, ATPase-like K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D YPA_4099 hypothetical protein K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D YPA_0933 putative two-component sensor protein like yojN K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3]
D YPA_0934 hypothetical protein K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3]
D YPA_0931 two component sensor kinase/response regulator protein RcsC K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]
D YPA_2880 Hpt sensor hybrid histidine kinase K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D YPA_1302 signal transduction histidine kinase K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3]
D YPA_3772 putative membrane protein K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D YPA_3519 PAS/PAC sensor signal transduction histidine kinase K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D YPA_1084 PAS/PAC sensor signal transduction histidine kinase K07709 zraS; two-component system, NtrC family, sensor histidine kinase HydH [EC:2.7.13.3]
D YPA_2355 two-component system sensor kinase K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D YPA_1855 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D YPA_4028 two-component sensor/regulator K14978 ssrA; two-component system, LuxR family, secretion system sensor histidine kinase SsrA
C 01009 Protein phosphatases and associated proteins [BR:ypa01009]
D YPA_3463 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D YPA_2612 heat shock protein HtpG K04079 HSP90A; molecular chaperone HtpG
D YPA_3842 phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:ypa01002]
D YPA_4069 signal peptidase II. Aspartic peptidase. MEROPS family A08 K03101 lspA; signal peptidase II [EC:3.4.23.36]
D YPA_0463 type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A K02464 gspO; general secretion pathway protein O [EC:3.4.23.43 2.1.1.-]
D YPA_3097 putative membrane protein K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D YPA_PCP0005 plasminogen activator Pla. Aspartic peptidase. MEROPS family A26 K08566 pla; plasminogen activator [EC:3.4.23.48]
D YPA_2436 pyroglutamyl-peptidase I. Cysteine peptidase. MEROPS family C15 K01304 pcp; pyroglutamyl-peptidase [EC:3.4.19.3]
D YPA_2311 GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D YPA_3447 colicin V processing peptidase. Cysteine peptidase. MEROPS family C39 K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB
D YPA_0993 spr peptidase. Cysteine peptidase. MEROPS family C40 K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13]
D YPA_1730 hypothetical protein K19303 mepH; murein DD-endopeptidase [EC:3.4.-.-]
D YPA_1759 putative lipoprotein K13695 nlpC; probable lipoprotein NlpC
D YPA_2072 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D YPA_3746 glutamate synthase (NADPH) large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D YPA_4163 glutamine--fructose-6-phosphate transaminase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D YPA_2474 asparagine synthase (glutamine-hydrolysing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D YPA_CD0072 YopJ peptidase. Cysteine peptidase. MEROPS family C55 K08598 yopJ; YopJ protease family
D YPA_2666 4-methyl-5(B-hydroxyethyl)-thiazol monophosphate biosynthesis enzyme K03152 thiJ; protein deglycase [EC:3.5.1.124]
D YPA_CD0042 YopT peptidase. Cysteine peptidase. MEROPS family C58 K08599 yopT; YopT peptidase [EC:3.4.22.-]
D YPA_1743 hypothetical protein K19236 ycfS; L,D-transpeptidase YcfS
D YPA_0701 hypothetical protein K21470 ycbB; L,D-transpeptidase YcbB
D YPA_1048 putative membrane protein K07052 K07052; CAAX protease family protein
D YPA_0281 putative membrane protein K07052 K07052; CAAX protease family protein
D YPA_0709 putative aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D YPA_3802 oligopeptidase A. Metallo peptidase. MEROPS family M03A K01414 prlC; oligopeptidase A [EC:3.4.24.70]
D YPA_3800 metalloprotease K01406 prtC; serralysin [EC:3.4.24.40]
D YPA_3689 putative phage-related protein K17733 cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]
D YPA_0491 pitrilysin. Metallo peptidase. MEROPS family M16A K01407 ptrA; protease III [EC:3.4.24.55]
D YPA_3819 putative insulinase family protease K07263 pqqL; zinc protease [EC:3.4.24.-]
D YPA_2942 PepA aminopeptidase. Metallo peptidase. MEROPS family M17 K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D YPA_2330 PepB aminopeptidase. Metallo peptidase. MEROPS family M17 K07751 pepB; PepB aminopeptidase [EC:3.4.11.23]
D YPA_2244 succinyldiaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D YPA_3367 peptidase K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4]
D YPA_1893 peptidase T. Metallo peptidase. MEROPS family M20B K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4]
D YPA_2720 Xaa-His dipeptidase. Metallo peptidase. MEROPS family M20C K01270 pepD; dipeptidase D [EC:3.4.13.-]
D YPA_2740 putative amino acid hydrolase K02083 allC; allantoate deiminase [EC:3.5.3.9]
D YPA_1445 putative M23/M37 peptidase-family protein K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-]
D YPA_2807 methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D YPA_0517 methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D YPA_3435 Xaa-Pro dipeptidase. Metallo peptidase. MEROPS family M24B K01271 pepQ; Xaa-Pro dipeptidase [EC:3.4.13.9]
D YPA_0357 aminopeptidase P. Metallo peptidase. MEROPS family M24B K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D YPA_1658 putative carboxypeptidase K01299 E3.4.17.19; carboxypeptidase Taq [EC:3.4.17.19]
D YPA_0052 membrane protease FtsH catalytic subunit K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D YPA_1815 putative heat shock protein K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D YPA_0339 putative lipoprotein K07387 K07387; metalloprotease [EC:3.4.24.-]
D YPA_2260 hypothetical protein K01423 bepA; beta-barrel assembly-enhancing protease [EC:3.4.-.-]
D YPA_0527 putative membrane protein K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D YPA_2091 murein endopeptidase. Metallo peptidase. MEROPS family M74 K07261 mepA; penicillin-insensitive murein DD-endopeptidase [EC:3.4.24.-]
D YPA_1106 hypothetical protein K09933 mtfA; MtfA peptidase
D YPA_1666 B1598 peptidase. Serine peptidase. MEROPS family S01B K04775 ydgD; protease YdgD [EC:3.4.21.-]
D YPA_2881 global stress requirement protein GsrA K04771 degP; serine protease Do [EC:3.4.21.107]
D YPA_3737 protease K04772 degQ; serine protease DegQ [EC:3.4.21.-]
D YPA_3735 DegS. Serine peptidase. MEROPS family S01B K04691 hhoB; serine protease DegS [EC:3.4.21.-]
D YPA_1152 oligopeptidase B. Serine peptidase. MEROPS family S09A K01354 ptrB; oligopeptidase B [EC:3.4.21.83]
D YPA_2498 penicillin-binding protein 6. Serine peptidase. MEROPS family S11 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D YPA_1037 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D YPA_0611 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D YPA_0887 murein-DD-endopeptidase. Serine peptidase. MEROPS family S11 K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-]
D YPA_0939 putative penicillin-binding protein K18988 ampH; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase [EC:3.4.16.4 3.4.21.-]
D YPA_0056 D-Ala-D-Ala peptidase C. Serine peptidase. MEROPS family S13 K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D YPA_2652 ATP-dependent Clp protease proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D YPA_2650 Lon-A peptidase. Serine peptidase. MEROPS family S16 K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D YPA_0724 putative Lon protease K04770 lonH; Lon-like ATP-dependent protease [EC:3.4.21.-]
D YPA_3970 SOS-response transcriptional repressor, LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D YPA_2451 signal peptidase I. Serine peptidase. MEROPS family S26A K03100 lepB; signal peptidase I [EC:3.4.21.89]
D YPA_1156 prolyl aminopeptidase. Serine peptidase. MEROPS family S33 K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D YPA_1816 C-terminal processing peptidase-1. Serine peptidase. MEROPS family S41A K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D YPA_1519 protease IV K04773 sppA; protease IV [EC:3.4.21.-]
D YPA_1574 sohB peptidase. Serine peptidase. MEROPS family S49 K04774 sohB; serine protease SohB [EC:3.4.21.-]
D YPA_3348 membrane protein K02441 glpG; rhomboid protease GlpG [EC:3.4.21.105]
D YPA_0256 HslV component of HslUV peptidase. Threonine peptidase. MEROPS family T01B K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D YPA_2690 hypothetical protein K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D YPA_2691 gamma-glutamyltransferase 1. Threonine peptidase. MEROPS family T03 K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D YPA_2294 putative protease K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D YPA_2982 hypothetical protein K24845 ubiV; O2-independent ubiquinone biosynthesis protein UbiV
D YPA_2981 putative protease K24844 ubiU; O2-independent ubiquinone biosynthesis protein UbiU
D YPA_3705 microcin-processing peptidase 1. Unknown type peptidase. MEROPS family U62 K03592 pmbA; PmbA protein
D YPA_3685 microcin-processing peptidase 2. Unknown type peptidase. MEROPS family U62 K03568 tldD; TldD protein
D YPA_0925 putative ecotin precursor K08276 eco; ecotin
D YPA_2528 putative membrane protein K06894 yfhM; alpha-2-macroglobulin
D YPA_3908 putative membrane protein K04087 hflC; modulator of FtsH protease HflC
D YPA_3909 putative membrane protein K04088 hflK; modulator of FtsH protease HflK
C 01003 Glycosyltransferases [BR:ypa01003]
D YPA_1365 putative glycosyl transferase K00720 UGCG; ceramide glucosyltransferase [EC:2.4.1.80]
D YPA_3768 glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21]
D YPA_3750 monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D YPA_2531 hypothetical protein K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D YPA_2893 penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D YPA_3325 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D YPA_2529 hypothetical protein K12551 sgtA; monofunctional glycosyltransferase [EC:2.4.99.28]
D YPA_0163 UDP-N-acetyl-D-mannosaminuronic acid transferase K02852 wecG; UDP-N-acetyl-D-mannosaminouronate:lipid I N-acetyl-D-mannosaminouronosyltransferase [EC:2.4.1.180]
D YPA_0161 hypothetical protein K12582 wecF; dTDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase [EC:2.4.1.325]
D YPA_0152 putative undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D YPA_1336 haemin storage system, HmsR protein K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:ypa01005]
D YPA_0532 acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D YPA_0533 lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D YPA_3540 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D YPA_0530 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D YPA_2570 UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D YPA_0687 lipid-A-disaccharide synthase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D YPA_1446 lipid A biosynthesis acyltransferase K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243]
D YPA_3645 putative membrane protein K12974 lpxP; KDO2-lipid IV(A) palmitoleoyltransferase [EC:2.3.1.242]
D YPA_0994 lipid-A kinase K19803 lpxT; Kdo2-lipid A phosphotransferase [EC:2.7.4.29]
D YPA_3487 3-deoxy-D-manno-octulosonic-acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D YPA_1762 dolichyl-phosphate-mannose-protein mannosyltransferase-family protein K07264 arnT; 4-amino-4-deoxy-L-arabinose transferase [EC:2.4.2.43]
D YPA_1118 Antimicrobial peptide resistance and lipid A acylation PagP K12973 pagP; lipid IVA palmitoyltransferase [EC:2.3.1.251]
D YPA_1723 putative membrane protein K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D YPA_4101 phosphatidylethanolamine:Kdo2-lipid A phosphoethanolamine transferase K12975 eptB; KDO II ethanolaminephosphotransferase [EC:2.7.8.42]
D YPA_1405 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D YPA_0694 putative 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D YPA_3725 hypothetical protein K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D YPA_3726 hypothetical protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D YPA_3486 lipopolysaccharide heptosyltransferase-1 K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D YPA_3488 lipopolysaccharide core biosynthesis glycosyl transferase K12984 waaE; (heptosyl)LPS beta-1,4-glucosyltransferase [EC:2.4.1.-]
D YPA_3485 ADP-heptose--LPS heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D YPA_3868 putative lipopolysaccharide core biosynthesis protein K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25]
D YPA_2734 phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D YPA_0551 D-alpha,beta-D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D YPA_3136 D-beta-D-heptose 1-phosphate adenylyltransferase / D-alpha,beta-D-heptose 7-phosphate 1-kinase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D YPA_3484 ADP-glyceromanno-heptose 6-epimerase precursor K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D YPA_2600 putative mannosyltransferase K13000 wbyJ; mannosyltransferase [EC:2.4.1.-]
D YPA_2598 putative mannosyltransferase K13001 wbyK; mannosyltransferase [EC:2.4.1.-]
D YPA_2593 glycosyltransferase K13002 wbyL; glycosyltransferase [EC:2.4.1.-]
D YPA_0162 4-alpha-L-fucosyltransferase K02853 wzyE; enterobacterial common antigen polymerase [EC:2.4.99.27]
D YPA_0152 putative undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:ypa01011]
D YPA_3734 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D YPA_3429 UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D YPA_3545 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D YPA_3548 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D YPA_3551 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D YPA_3544 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D YPA_3964 alanine racemase (biosynthetic) K01775 alr; alanine racemase [EC:5.1.1.1]
D YPA_0113 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D YPA_3549 Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D YPA_3546 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D YPA_3141 Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D YPA_0615 Undecaprenyl-diphosphatase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D YPA_1425 putative membrane protein K03980 murJ; putative peptidoglycan lipid II flippase
D YPA_3325 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D YPA_2893 penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D YPA_2531 hypothetical protein K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D YPA_2493 peptidoglycan glycosyltransferase K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D YPA_3552 peptidoglycan synthetase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D YPA_2498 penicillin-binding protein 6. Serine peptidase. MEROPS family S11 K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D YPA_1037 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D YPA_0611 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D YPA_0056 D-Ala-D-Ala peptidase C. Serine peptidase. MEROPS family S13 K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D YPA_0939 putative penicillin-binding protein K18988 ampH; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase [EC:3.4.16.4 3.4.21.-]
D YPA_0887 murein-DD-endopeptidase. Serine peptidase. MEROPS family S11 K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-]
D YPA_3750 monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D YPA_2529 hypothetical protein K12551 sgtA; monofunctional glycosyltransferase [EC:2.4.99.28]
D YPA_1743 hypothetical protein K19236 ycfS; L,D-transpeptidase YcfS
D YPA_0701 hypothetical protein K21470 ycbB; L,D-transpeptidase YcbB
D YPA_2091 murein endopeptidase. Metallo peptidase. MEROPS family M74 K07261 mepA; penicillin-insensitive murein DD-endopeptidase [EC:3.4.24.-]
D YPA_1730 hypothetical protein K19303 mepH; murein DD-endopeptidase [EC:3.4.-.-]
D YPA_0993 spr peptidase. Cysteine peptidase. MEROPS family C40 K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13]
D YPA_1445 putative M23/M37 peptidase-family protein K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-]
D YPA_3689 putative phage-related protein K17733 cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]
D YPA_4043 putative soluble lytic murein transglycosylase K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D YPA_0496 membrane-bound lytic murein transglycosylase A precursor K08304 mltA; peptidoglycan lytic transglycosylase A [EC:4.2.2.29]
D YPA_2147 putative membrane-bound lytic murein transglycosylase B K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D YPA_1463 putative lipoprotein K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D YPA_0310 membrane-bound lytic murein transglycosylase C K08306 mltC; peptidoglycan lytic transglycosylase C [EC:4.2.2.29]
D YPA_0556 membrane-bound lytic murein transglycosylase D precursor K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
D YPA_1782 putative membrane-bound lytic murein transglycosylase K08308 mltE; peptidoglycan lytic transglycosylase E [EC:4.2.2.29]
D YPA_2361 putative membrane protein K18691 mltF; peptidoglycan lytic transglycosylase F [EC:4.2.2.29]
D YPA_1921 hypothetical protein K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D YPA_2495 rare lipoprotein A precursor K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D YPA_3914 putative N-acetylmuramoyl-L-alanine amidase-family protein K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D YPA_0495 N-acetylmuramoyl-L-alanine amidase AmiC precursor K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D YPA_1806 N-acetylmuramoyl-L-alanine amidase K11066 amiD; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D YPA_2925 putative signalling protein in beta-lactamase regulation K03806 ampD; N-acetyl-anhydromuramoyl-L-alanine amidase [EC:3.5.1.28]
D YPA_1739 major outer membrane lipoprotein K06078 lpp; murein lipoprotein
C 01004 Lipid biosynthesis proteins [BR:ypa01004]
D YPA_0756 putative acyl transferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D YPA_1927 [Acyl-carrier-protein] S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D YPA_1928 3-oxoacyl-[acyl-carrier-protein] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D YPA_1359 hypothetical protein K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D YPA_1360 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D YPA_0748 putative beta-ketoacyl-(acyl-carrier-protein) synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D YPA_2086 3-oxoacyl-[acyl-carrier-protein] synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D YPA_1924 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D YPA_0719 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D YPA_0749 putative beta-ketoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D YPA_1926 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D YPA_0723 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D YPA_0747 putative (3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydrase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D YPA_0531 3-hydroxyacyl-[acyl-carrier-protein] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D YPA_4149 hypothetical protein K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D YPA_2575 putative acyl-CoA thioesterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D YPA_2636 acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
D YPA_1554 putative acyl-CoA thioester hydrolase K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
D YPA_2646 hypothetical protein K12500 tesC; thioesterase III [EC:3.1.2.-]
D YPA_1288 yersiniabactin biosynthetic protein K04786 irp1; yersiniabactin nonribosomal peptide/polyketide synthase
D YPA_1289 yersiniabactin biosynthetic protein K04784 irp2; yersiniabactin nonribosomal peptide synthetase
D YPA_4031 acetyl-coenzyme A synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D YPA_3561 putative AMP-binding enzyme-family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D YPA_1457 long-chain-fatty-acid-CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D YPA_3972 glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D YPA_1929 phosphate:acyl-[acyl carrier protein] acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D YPA_3143 acyl-phosphate glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D YPA_3119 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins [BR:ypa01008]
D YPA_0876 putative phosphopantetheinyl transferase K02362 entD; enterobactin synthetase component D [EC:6.3.2.14 2.7.8.-]
D YPA_1288 yersiniabactin biosynthetic protein K04786 irp1; yersiniabactin nonribosomal peptide/polyketide synthase
D YPA_1289 yersiniabactin biosynthetic protein K04784 irp2; yersiniabactin nonribosomal peptide synthetase
D YPA_1285 yersiniabactin siderophore biosynthetic protein K04783 irp5; yersiniabactin salicyl-AMP ligase [EC:6.3.2.-]
D YPA_3374 putative siderophore biosysnthesis protein K12240 pchF; L-cysteine---[L-cysteinyl-carrier protein] ligase PchF [EC:6.2.1.69]
D YPA_1287 yersiniabactin biosynthetic protein YbtU K04785 irp3; yersiniabactin synthetase, thiazolinyl reductase component
D YPA_3376 hypothetical protein K12241 pchG; pyochelin biosynthesis protein PchG
D YPA_1286 yersiniabactin biosynthetic protein YbtT K05374 irp4; yersiniabactin synthetase, thioesterase component
C 01006 Prenyltransferases [BR:ypa01006]
D YPA_2670 farnesyl-diphosphate synthase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D YPA_0063 octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D YPA_0525 Undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D YPA_3912 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D YPA_0254 1,4-Dihydroxy-2-naphtoate prenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D YPA_3973 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D YPA_2662 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
C 01007 Amino acid related enzymes [BR:ypa01007]
D YPA_2173 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D YPA_2467 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D YPA_2899 putative glutamyl-tRNA synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D YPA_1715 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D YPA_3312 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D YPA_2568 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D YPA_1428 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D YPA_0816 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D YPA_4068 Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D YPA_2944 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D YPA_2487 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D YPA_0381 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D YPA_1435 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D YPA_0707 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D YPA_2318 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D YPA_3011 glycyl-tRNA synthetase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D YPA_3012 glycyl-tRNA synthetase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D YPA_0669 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D YPA_0545 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D YPA_1778 Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D YPA_2840 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D YPA_1773 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D YPA_1772 phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D YPA_0704 L-aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D YPA_3003 valine-pyruvate aminotransferase K00835 avtA; valine--pyruvate aminotransferase [EC:2.6.1.66]
D YPA_2049 aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D YPA_2164 aminotransferase K14261 alaC; alanine-synthesizing transaminase [EC:2.6.1.-]
D YPA_3963 aromatic amino acid aminotransferase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D YPA_0843 histidinol phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D YPA_3483 2-amino-3-ketobutyrate coenzyme A ligase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D YPA_1059 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D YPA_2195 putative aminotransferase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D YPA_3299 aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D YPA_1344 succinylornithine aminotransferase K00840 astC; succinylornithine aminotransferase [EC:2.6.1.81]
D YPA_2283 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D YPA_1057 adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D YPA_2889 glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D YPA_0123 branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D YPA_0680 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D YPA_2744 hypothetical protein K00839 pucG; (S)-ureidoglycine---glyoxylate transaminase [EC:2.6.1.112]
D YPA_1766 conserved hypothetical protein K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87]
D YPA_0159 putative lipopolysaccharide biosynthesis protein K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:ypa00194]
D YPA_4165 ATP synthase epsilon subunit protein K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D YPA_4166 ATP synthase beta subunit protein K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D YPA_4167 ATP synthase gamma subunit protein K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D YPA_4168 ATP synthase alpha subunit protein K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D YPA_4169 ATP synthase delta subunit protein K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D YPA_4170 ATP synthase subunit B protein K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D YPA_4171 ATP synthase subunit C protein K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D YPA_4172 ATP synthase subunit B protein K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D YPA_4173 ATP synthase protein I K02116 atpI; ATP synthase protein I
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:ypa03000]
D YPA_1618 transcriptional regulator, AraC family K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein
D YPA_3949 transcriptional regulator, AraC family K02854 rhaR; AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR
D YPA_3950 transcriptional regulator, AraC family K02855 rhaS; AraC family transcriptional regulator, L-rhamnose operon regulatory protein RhaS
D YPA_2410 cel operon repressor K03490 chbR; AraC family transcriptional regulator, dual regulator of chb operon
D YPA_1290 transcriptional regulator, AraC family K05372 ybtA; AraC family transcriptional regulator
D YPA_4047 transcriptional regulator, AraC family K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D YPA_CD0014 thermoregulatory protein K20968 exsA; AraC family transcriptional regulator, exoenzyme S synthesis regulatory protein ExsA
D YPA_3471 DNA-O6-methylguanine--protein-cysteine S-methyltransferase / Transcriptional regulator Ada K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D YPA_0500 glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D YPA_0131 LysR-family transcriptional regulatory protein K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D YPA_0235 lysR-family transcriptional regulatory protein K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D YPA_4065 transcriptional activator protein NhaR K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D YPA_0107 oxidative stress transcriptional regulatory protein K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D YPA_0351 chromosome initiation inhibitor K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D YPA_3562 LysR-family transcriptional regulator LeuO K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon
D YPA_1578 cys regulon transcriptional activator K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D YPA_1992 putativeLlysR-family transcriptional regulatory protein K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA
D YPA_3457 transcriptional regulator K16516 galR; LysR family transcriptional regulator, regulator for genes of the gallate degradation pathway
D YPA_3696 lysR-family transcriptional regulatory protein K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon
D YPA_0118 LysR-family transcriptional regulatory protein K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
D YPA_0613 deoxyribose operon repressor K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor
D YPA_3349 glycerol-3-phosphate repressor protein K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D YPA_0439 DeoR-family regulatory protein K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor
D YPA_2817 putative deoR-family regulatory protein K02430 fucR; DeoR family transcriptional regulator, L-fucose operon activator
D YPA_0421 transcriptional regulator, LacI family K27069 lacI; LacI family transcriptional regulator, lactose operon repressor
D YPA_3392 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D YPA_1993 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D YPA_1102 hypothetical protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D YPA_4124 transcriptional regulator, AraC family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D YPA_0474 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D YPA_1630 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D YPA_3179 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D YPA_0258 transcriptional regulator, LacI family K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D YPA_3557 transcriptional regulator, LacI family K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D YPA_3711 transcriptional regulator, LacI family K03485 treR; LacI family transcriptional regulator, trehalose operon repressor
D YPA_1732 transcriptional regulator, LacI family K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
D YPA_3784 transcriptional regulator, LacI family K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D YPA_2029 transcriptional regulator, LacI family K06146 idnR; LacI family transcriptional regulator, gluconate utilization system Gnt-II transcriptional activator
D YPA_2958 transcriptional regulator, GntR family K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein
D YPA_1355 transcriptional regulator, GntR family K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D YPA_1266 transcriptional regulator, GntR family K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D YPA_1503 transcriptional regulator, GntR family K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D YPA_2922 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D YPA_0997 transcriptional regulator, GntR family K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor
D YPA_3212 transcriptional regulator, GntR family K19775 exuR; GntR family transcriptional regulator, hexuronate regulon transcriptional repressor
D YPA_2284 transcriptional regulator, GntR family K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D YPA_1075 TetR-family regulatory protein K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D YPA_2626 putative tetR-family transcriptional regulatory protein K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D YPA_3496 cell division inhibitor SlmA K05501 slmA; TetR/AcrR family transcriptional regulator
D YPA_1724 TetR-family transcriptional regulatory protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D YPA_0109 TetR-family transcriptional regulatory protein K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
D YPA_1094 transcriptional regulator, TetR family K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
D YPA_0002 regulatory protein K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D YPA_0665 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D YPA_1872 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D YPA_2641 transcriptional regulator, AsnC family K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
D YPA_1955 quorum-sensing transcriptional activator YpeR K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR
D YPA_0279 quorum-sensing transcriptional regulator K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR
D YPA_3346 maltose regulon positive regulatory protein K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
D YPA_1720 MarR-family transcriptional regulatory protein K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D YPA_2757 MarR-family transcriptional regulatory protein K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB
D YPA_2580 putative regulatory protein K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D YPA_3237 MerR-family transcriptional regulator K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA
D YPA_2463 ferric uptake regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D YPA_3969 zinc uptake regulator, Fur family K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D YPA_0020 repressor of aceBA operon K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D YPA_1807 IclR-family transcriptional regulatory protein K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D YPA_3297 cAMP-regulatory protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D YPA_1649 fumarate and nitrate reduction regulatory protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D YPA_2338 transcriptional regulator, BadM/Rrf2 family K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D YPA_3905 transcriptional regulator, BadM/Rrf2 family K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D YPA_2798 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D YPA_1448 hex regulon repressor K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D YPA_3428 bifunctional protein BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D YPA_3666 DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D YPA_4044 Trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor
D YPA_2532 putative DNA-binding protein K07724 ner; Ner family transcriptional regulator
D YPA_0065 putative DNA-binding protein K07724 ner; Ner family transcriptional regulator
D YPA_3572 hypothetical protein K11925 sgrR; SgrR family transcriptional regulator
D YPA_3840 transcriptional regulator NadR K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D YPA_0391 hypothetical protein K13655 mqsA; HTH-type transcriptional regulator / antitoxin MqsA
D YPA_3806 transcriptional regulator, CdaR family K02647 cdaR; carbohydrate diacid regulator
D YPA_1050 molybdenum transport protein ModE K02019 modE; molybdate transport system regulatory protein
D YPA_4118 conserved hypothetical protein K07726 K07726; putative transcriptional regulator
D YPA_0262 transcriptional repressor protein K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
D YPA_1229 L-proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D YPA_2654 transcriptional regulator BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D YPA_MT0090 DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D YPA_MT0082 partitioning protein B K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D YPA_CD0049 plasmid partitioning control protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D YPA_3440 putative regulatory protein K05785 rfaH; transcriptional antiterminator RfaH
D YPA_0067 transcriptional regulator, ArgR family K03402 argR; transcriptional regulator of arginine metabolism
D YPA_2472 putative N-acetylglucosamine regulatory protein K02565 nagC; N-acetylglucosamine repressor
D YPA_1628 putative ROK family transcriptional regulatory protein K15545 mlc; transcriptional regulator of PTS gene
D YPA_3016 mannitol repressor, MtlR K02562 mtlR; mannitol operon repressor
D YPA_1693 transcriptional regulatory protein K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D YPA_2254 glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor
D YPA_1702 psp operon transcriptional activator K03974 pspF; psp operon transcriptional activator
D YPA_1699 phage shock protein C K03973 pspC; phage shock protein C
D YPA_3870 putative transcriptional repressor K11531 lsrR; lsr operon transcriptional repressor
D YPA_3708 regulator of nucleoside diphosphate kinase K06140 rnk; regulator of nucleoside diphosphate kinase
D YPA_1281 hypothetical protein K07733 alpA; prophage regulatory protein
D YPA_0395 putative regulatory protein K07733 alpA; prophage regulatory protein
D YPA_0571 transcriptional regulator K07733 alpA; prophage regulatory protein
D YPA_0329 hypothetical protein K07735 algH; putative transcriptional regulator
D YPA_2898 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D YPA_2678 hypothetical protein K07738 nrdR; transcriptional repressor NrdR
D YPA_2715 curlin genes regulatory protein K11926 crl; sigma factor-binding protein Crl
D YPA_3555 hypothetical protein K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:ypa03021]
D YPA_3239 DNA-directed RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D YPA_3619 DNA-directed RNA polymerase beta chain K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D YPA_3618 DNA-directed RNA polymerase beta' chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D YPA_3503 DNA-directed RNA polymerase, omega chain K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D YPA_3147 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D YPA_2788 RNA polymerase sigma factor RpoS K03087 rpoS; RNA polymerase nonessential primary-like sigma factor
D YPA_2445 RNA polymerase sigma E factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D YPA_0211 RNA polymerase sigma-32 factor K03089 rpoH; RNA polymerase sigma-32 factor
D YPA_3721 RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D YPA_3045 putative RNA polymerase sigma factor for flagellar operon K02405 fliA; RNA polymerase sigma factor FliA
D YPA_1219 RNA polymerase sigma factor for flagellar operon K02405 fliA; RNA polymerase sigma factor FliA
D YPA_3578 RNA polymerase associated helicase K03580 hepA; ATP-dependent helicase HepA [EC:5.6.2.-]
D YPA_0047 N utilization substance protein A K02600 nusA; transcription termination/antitermination protein NusA
D YPA_2675 N utilization substance protein B K03625 nusB; transcription antitermination protein NusB
D YPA_3624 transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG
D YPA_3742 putative stringent starvation protein A K03599 sspA; stringent starvation protein A
D YPA_3743 putative stringent starvation protein B K03600 sspB; stringent starvation protein B
D YPA_2446 sigma E factor negative regulatory protein K03597 rseA; sigma-E factor negative regulatory protein RseA
D YPA_2447 sigma E factor regulatory protein K03598 rseB; sigma-E factor negative regulatory protein RseB
D YPA_2448 sigma E factor regulatory protein K03803 rseC; sigma-E factor negative regulatory protein RseC
D YPA_2898 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D YPA_0055 transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D YPA_3334 transcription elongation factor GreB K04760 greB; transcription elongation factor GreB
D YPA_0151 transcription termination factor Rho K03628 rho; transcription termination factor Rho
D YPA_0540 hypothetical protein K19000 rof; Rho-binding antiterminator
C 03019 Messenger RNA biogenesis [BR:ypa03019]
D YPA_1935 RNAse E K08300 rne; ribonuclease E [EC:3.1.26.12]
D YPA_3682 RNAse G K08301 rng; ribonuclease G [EC:3.1.26.-]
D YPA_2452 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D YPA_3904 RNAse R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D YPA_3918 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D YPA_0149 putative DEAD-box helicase K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
D YPA_1095 DEAD/DEAH box helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D YPA_0882 helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D YPA_2990 cold-shock dead-box protein A K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D YPA_0189 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D YPA_2874 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D YPA_2992 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D YPA_0151 transcription termination factor Rho K03628 rho; transcription termination factor Rho
D YPA_3463 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D YPA_4062 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D YPA_3931 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D YPA_3911 RNA-binding protein Hfq K03666 hfq; host factor-I protein
D YPA_2273 polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D YPA_2900 poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D YPA_0482 hypothetical protein K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D YPA_3677 diguanylate cyclase/phosphodiesterase K18765 csrD; RNase E specificity factor CsrD
D YPA_0253 S-adenosylmethionine:2-demethylmenaquinone methyltransferase K02553 rraA; regulator of ribonuclease activity A
D YPA_2946 hypothetical protein K09893 rraB; regulator of ribonuclease activity B
D YPA_3717 hypothetical protein K06958 rapZ; RNase adapter protein RapZ
D YPA_1668 ATP-dependent helicase K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
D YPA_1671 ATP-dependent helicase HrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
D YPA_2894 ATP-dependent helicase K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6]
D YPA_r060 tke1 RNA K15841 glmY; small regulatory RNA GlmY
D YPA_r024 regulatory RNA csrB K18515 csrB; small regulatory RNA CsrB
D YPA_r083 regulatory RNA CsrC K18516 csrC; small regulatory RNA CsrC
D YPA_r084 Spot 42 RNA K18527 spf; small regulatory RNA Spot 42
C 03041 Spliceosome
C 03011 Ribosome [BR:ypa03011]
D YPA_0683 SSU ribosomal protein S1P K02945 RP-S1; small subunit ribosomal protein S1
D YPA_0518 SSU ribosomal protein S2P K02967 RP-S2; small subunit ribosomal protein S2
D YPA_3257 SSU ribosomal protein S3P K02982 RP-S3; small subunit ribosomal protein S3
D YPA_3240 SSU ribosomal protein S4P K02986 RP-S4; small subunit ribosomal protein S4
D YPA_3246 SSU ribosomal protein S5P K02988 RP-S5; small subunit ribosomal protein S5
D YPA_0089 SSU ribosomal protein S6P K02990 RP-S6; small subunit ribosomal protein S6
D YPA_3271 SSU ribosomal protein S7P K02992 RP-S7; small subunit ribosomal protein S7
D YPA_3249 SSU ribosomal protein S8P K02994 RP-S8; small subunit ribosomal protein S8
D YPA_3741 SSU ribosomal protein S9P K02996 RP-S9; small subunit ribosomal protein S9
D YPA_3264 SSU ribosomal protein S10P K02946 RP-S10; small subunit ribosomal protein S10
D YPA_3241 SSU ribosomal protein S11P K02948 RP-S11; small subunit ribosomal protein S11
D YPA_3272 SSU ribosomal protein S12P K02950 RP-S12; small subunit ribosomal protein S12
D YPA_3242 SSU ribosomal protein S13P K02952 RP-S13; small subunit ribosomal protein S13
D YPA_3250 SSU ribosomal protein S14P K02954 RP-S14; small subunit ribosomal protein S14
D YPA_0043 SSU ribosomal protein S15P K02956 RP-S15; small subunit ribosomal protein S15
D YPA_2849 SSU ribosomal protein S16P K02959 RP-S16; small subunit ribosomal protein S16
D YPA_3254 SSU ribosomal protein S17P K02961 RP-S17; small subunit ribosomal protein S17
D YPA_0087 SSU ribosomal protein S18P K02963 RP-S18; small subunit ribosomal protein S18
D YPA_3259 SSU ribosomal protein S19P K02965 RP-S19; small subunit ribosomal protein S19
D YPA_4066 SSU ribosomal protein S20P K02968 RP-S20; small subunit ribosomal protein S20
D YPA_3145 SSU ribosomal protein S21P K02970 RP-S21; small subunit ribosomal protein S21
D YPA_3622 LSU ribosomal protein L1P K02863 RP-L1; large subunit ribosomal protein L1
D YPA_3260 LSU ribosomal protein L2P K02886 RP-L2; large subunit ribosomal protein L2
D YPA_3263 LSU ribosomal protein L3P K02906 RP-L3; large subunit ribosomal protein L3
D YPA_3262 LSU ribosomal protein L4P K02926 RP-L4; large subunit ribosomal protein L4
D YPA_3251 LSU ribosomal protein L5P K02931 RP-L5; large subunit ribosomal protein L5
D YPA_3248 LSU ribosomal protein L6P K02933 RP-L6; large subunit ribosomal protein L6
D YPA_0086 LSU ribosomal protein L9P K02939 RP-L9; large subunit ribosomal protein L9
D YPA_3621 LSU ribosomal protein L10P K02864 RP-L10; large subunit ribosomal protein L10
D YPA_3623 LSU ribosomal protein L11P K02867 RP-L11; large subunit ribosomal protein L11
D YPA_3620 LSU ribosomal protein L12P K02935 RP-L7; large subunit ribosomal protein L7/L12
D YPA_3740 LSU ribosomal protein L13P K02871 RP-L13; large subunit ribosomal protein L13
D YPA_3253 LSU ribosomal protein L14P K02874 RP-L14; large subunit ribosomal protein L14
D YPA_3244 LSU ribosomal protein L15P K02876 RP-L15; large subunit ribosomal protein L15
D YPA_3256 LSU ribosomal protein L16P K02878 RP-L16; large subunit ribosomal protein L16
D YPA_3238 LSU ribosomal protein L17P K02879 RP-L17; large subunit ribosomal protein L17
D YPA_3247 LSU ribosomal protein L18P K02881 RP-L18; large subunit ribosomal protein L18
D YPA_2852 LSU ribosomal protein L19P K02884 RP-L19; large subunit ribosomal protein L19
D YPA_1775 LSU ribosomal protein L20P K02887 RP-L20; large subunit ribosomal protein L20
D YPA_0062 LSU ribosomal protein L21P K02888 RP-L21; large subunit ribosomal protein L21
D YPA_3258 LSU ribosomal protein L22P K02890 RP-L22; large subunit ribosomal protein L22
D YPA_3261 LSU ribosomal protein L23P K02892 RP-L23; large subunit ribosomal protein L23
D YPA_3252 LSU ribosomal protein L24P K02895 RP-L24; large subunit ribosomal protein L24
D YPA_0061 LSU ribosomal protein L27P K02899 RP-L27; large subunit ribosomal protein L27
D YPA_3492 LSU ribosomal protein L28P K02902 RP-L28; large subunit ribosomal protein L28
D YPA_3255 LSU ribosomal protein L29P K02904 RP-L29; large subunit ribosomal protein L29
D YPA_3245 LSU ribosomal protein L30P K02907 RP-L30; large subunit ribosomal protein L30
D YPA_0260 LSU ribosomal protein L31P K02909 RP-L31; large subunit ribosomal protein L31
D YPA_2629 LSU ribosomal protein L31P K02909 RP-L31; large subunit ribosomal protein L31
D YPA_1930 LSU ribosomal protein L32P K02911 RP-L32; large subunit ribosomal protein L32
D YPA_3491 LSU ribosomal protein L33P K02913 RP-L33; large subunit ribosomal protein L33
D YPA_4144 LSU ribosomal protein L34P K02914 RP-L34; large subunit ribosomal protein L34
D YPA_1776 LSU ribosomal protein L35P K02916 RP-L35; large subunit ribosomal protein L35
D YPA_2630 LSU ribosomal protein L36P K02919 RP-L36; large subunit ribosomal protein L36
D YPA_0982 LSU ribosomal protein L25P K02897 RP-L25; large subunit ribosomal protein L25
D YPA_r004 5S RNA K01985 5SrRNA; 5S ribosomal RNA
D YPA_r078 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPA_r012 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPA_r028 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPA_r089 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPA_r069 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPA_r085 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPA_r009 16S RNA K01977 16SrRNA; 16S ribosomal RNA
D YPA_r073 16S RNA K01977 16SrRNA; 16S ribosomal RNA
D YPA_r025 16S RNA K01977 16SrRNA; 16S ribosomal RNA
D YPA_r082 16S RNA K01977 16SrRNA; 16S ribosomal RNA
D YPA_r001 16S RNA K01977 16SrRNA; 16S ribosomal RNA
D YPA_r088 16S RNA K01977 16SrRNA; 16S ribosomal RNA
D YPA_r093 16S RNA K01977 16SrRNA; 16S ribosomal RNA
D YPA_r011 23S RNA K01980 23SrRNA; 23S ribosomal RNA
D YPA_r003 23S RNA K01980 23SrRNA; 23S ribosomal RNA
D YPA_r086 23S RNA K01980 23SrRNA; 23S ribosomal RNA
D YPA_r070 23S RNA K01980 23SrRNA; 23S ribosomal RNA
D YPA_r027 23S RNA K01980 23SrRNA; 23S ribosomal RNA
D YPA_r079 23S RNA K01980 23SrRNA; 23S ribosomal RNA
D YPA_r090 23S RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:ypa03009]
D YPA_2452 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D YPA_1108 hypothetical protein K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D YPA_3918 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D YPA_2453 putative GTP-binding protein K03595 era; GTPase
D YPA_0059 putative GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-]
D YPA_2898 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D YPA_0047 N utilization substance protein A K02600 nusA; transcription termination/antitermination protein NusA
D YPA_2675 N utilization substance protein B K03625 nusB; transcription antitermination protein NusB
D YPA_3624 transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG
D YPA_0984 ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D YPA_4086 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D YPA_3233 hypothetical protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D YPA_3857 16S rRNA m(2)G 1207 methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D YPA_0207 hypothetical protein K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D YPA_0331 hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D YPA_4174 glucose inhibited division protein B K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D YPA_3554 hypothetical protein K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D YPA_3755 putative tetrapyrrole methylase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D YPA_3801 hypothetical protein K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
D YPA_1122 rRNA (guanine-N1-)-methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D YPA_3903 putative methylase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D YPA_0053 ribosomal RNA large subunit methyltransferase J K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D YPA_2011 hypothetical protein K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181]
D YPA_3200 16S rRNA m(2)G 1207 methyltransferase K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174]
D YPA_2492 hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D YPA_0737 SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D YPA_3804 hypothetical protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D YPA_0713 hypothetical protein K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D YPA_0502 hypothetical protein K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D YPA_2322 hypothetical protein K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D YPA_0626 23S rRNA (uracil-5-)-methyltransferase RumB K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189]
D YPA_4091 ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D YPA_1571 ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D YPA_1934 ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D YPA_2768 ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D YPA_1884 ribosomal large subunit pseudouridine synthase E K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D YPA_2760 putative tRNA/rRNA methyltransferase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
D YPA_3855 SSU ribosomal protein S18P alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D YPA_1423 ribosomal-protein-alanine acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
D YPA_2850 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
D YPA_0676 hypothetical protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
D YPA_3668 LSU ribosomal protein L11P methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D YPA_2093 hypothetical protein K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
D YPA_1892 hypothetical protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
D YPA_1935 RNAse E K08300 rne; ribonuclease E [EC:3.1.26.12]
D YPA_3682 RNAse G K08301 rng; ribonuclease G [EC:3.1.26.-]
D YPA_0328 hypothetical protein K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D YPA_1148 ATP-dependent RNA helicase K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
D YPA_2990 cold-shock dead-box protein A K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D YPA_2442 ATP-dependent RNA helicase K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7]
D YPA_3919 hypothetical protein K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D YPA_2315 putative GTP-binding protein K03977 engA; GTPase
D YPA_3910 GTP-binding protein K03665 hflX; GTPase
D YPA_3227 hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D YPA_3504 guanosine-3',5'-bisbis(diphosphate) 3'-pyrophosphydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D YPA_0045 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D YPA_0048 hypothetical protein K09748 rimP; ribosome maturation factor RimP
D YPA_2566 hypothetical protein K14761 rlbA; ribosome-associated protein
D YPA_2491 hypothetical protein K09710 ybeB; ribosome-associated protein
D YPA_2479 hypothetical protein K07042 ybeY; probable rRNA maturation factor
D YPA_0054 hypothetical protein K07574 yhbY; RNA-binding protein
D YPA_3017 hypothetical protein K14762 yibL; ribosome-associated protein
D YPA_3704 hypothetical protein K09889 yjgA; ribosome-associated protein
D YPA_3719 SSU ribosomal protein S30P / sigma 54 modulation protein K05808 hpf; ribosome hibernation promoting factor
D YPA_3720 putative sigma N modulation factor K05808 hpf; ribosome hibernation promoting factor
D YPA_2770 SSU ribosomal protein S30P / sigma 54 modulation protein K05809 raiA; ribosome-associated inhibitor A
D YPA_1393 hypothetical protein K06942 ychF; ribosome-binding ATPase
D YPA_1931 hypothetical protein K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:ypa03016]
D YPA_3140 tRNA nucleotidyltransferase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D YPA_2173 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D YPA_0545 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D YPA_4068 Isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D YPA_2487 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D YPA_0816 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D YPA_2467 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D YPA_1428 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D YPA_0381 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D YPA_1435 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D YPA_2840 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D YPA_0707 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D YPA_1778 Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D YPA_0669 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D YPA_2568 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D YPA_2944 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D YPA_2318 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D YPA_1773 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D YPA_1772 phenylalanyl-tRNA synthetase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D YPA_1715 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D YPA_3312 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D YPA_3513 hypothetical protein K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D YPA_1911 hypothetical protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D YPA_0313 tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D YPA_0546 hypothetical protein K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-]
D YPA_2078 tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D YPA_0044 tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D YPA_2784 hypothetical protein K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D YPA_2337 putative aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YPA_1498 putative aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YPA_3227 hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D YPA_3912 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D YPA_4148 tRNA modification GTPase trmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D YPA_4175 glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D YPA_1521 selenophosphate synthase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D YPA_0079 inositol monophosphatase family protein K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D YPA_4145 ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D YPA_r098 rnpB; RNA component of RNaseP K01978 rnpB; M1 RNA
D YPA_1728 RNAse T K03683 rnt; ribonuclease T [EC:3.1.13.-]
D YPA_3498 RNAse PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D YPA_1595 exoribonuclease II K01147 rnb; exoribonuclease II [EC:3.1.13.1]
D YPA_1458 ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5]
D YPA_2895 putative 2'-5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
D YPA_3838 ATPase K06020 ettA; energy-dependent translational throttle protein EttA
D YPA_3011 glycyl-tRNA synthetase alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D YPA_3012 glycyl-tRNA synthetase beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D YPA_2899 putative glutamyl-tRNA synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D YPA_2583 hypothetical protein K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D YPA_2362 tRNA-adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D YPA_3968 hypothetical protein K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
D YPA_3667 hypothetical protein K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D YPA_0885 hypothetical protein K05541 dusC; tRNA-dihydrouridine synthase C [EC:1.-.-.-]
D YPA_2477 tRNA-i(6)A37 thiotransferase enzyme MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D YPA_1432 hypothetical protein K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
D YPA_1431 hypothetical protein K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-]
D YPA_0696 putative methyltransferase K06219 smtA; tRNA 5-carboxymethoxyuridine methyltransferase [EC:2.1.1.-]
D YPA_0111 tRNA (uracil-5-)-methyltransferase K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35]
D YPA_2851 tRNA (Guanine37-N(1)-) methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D YPA_2760 putative tRNA/rRNA methyltransferase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
D YPA_3505 tRNA (guanosine-2'-O-)-methyltransferase K00556 trmH; tRNA (guanosine-2'-O-)-methyltransferase [EC:2.1.1.34]
D YPA_2339 putative SpoU-family rRNA methylase K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200]
D YPA_3472 putative methyltransferase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D YPA_2443 hypothetical protein K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223]
D YPA_0512 tRNA pseudouridine synthase C K06175 truC; tRNA pseudouridine65 synthase [EC:5.4.99.26]
D YPA_4091 ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D YPA_1886 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D YPA_1684 hypothetical protein K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D YPA_0201 hypothetical protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D YPA_3273 hypothetical protein K07237 tusB; tRNA 2-thiouridine synthesizing protein B
D YPA_3274 hypothetical protein K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D YPA_3275 hypothetical protein K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D YPA_0739 putative sulfite reductase subunit protein K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D YPA_2335 hypothetical protein K13628 iscA; iron-sulfur cluster assembly protein
D YPA_0370 hypothetical protein K06980 ygfZ; tRNA-modifying protein YgfZ
D YPA_2087 hypothetical protein K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
D YPA_2687 S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D YPA_2645 hypothetical protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D YPA_2871 putative 6-pyruvoyl tetrahydrobiopterin synthase family protein K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D YPA_2872 hypothetical protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D YPA_0508 hypothetical protein K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D YPA_3917 putative iron-sulfur cluster-binding protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D YPA_2686 queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D YPA_2667 thiamine biosynthesis protein K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D YPA_0538 hypothetical protein K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D YPA_2247 putative acetyltransferase K06957 tmcA; tRNA(Met) cytidine acetyltransferase [EC:2.3.1.193]
D YPA_1455 hypothetical protein K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D YPA_3144 O-sialoglycoprotein endopeptidase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D YPA_3915 hypothetical protein K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D YPA_0497 hypothetical protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D YPA_3904 RNAse R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D YPA_2992 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:ypa03012]
D YPA_1588 translation initiation factor 1 (eIF-1/SUI1) K03113 EIF1; translation initiation factor 1
D YPA_0046 bacterial translation initiation factor 2 (bIF-2) K02519 infB; translation initiation factor IF-2
D YPA_1777 bacterial translation initiation factor 3 (bIF-3) K02520 infC; translation initiation factor IF-3
D YPA_3284 ATPase K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D YPA_0520 translation elongation factor Ts (EF-Ts) K02357 tsf; elongation factor Ts
D YPA_3626 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu
D YPA_3269 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu
D YPA_3270 translation elongation factor 2 (EF-2/EF-G) K02355 fusA; elongation factor G
D YPA_3032 selenocysteine-specific translation elongation factor SelB K03833 selB; selenocysteine-specific elongation factor
D YPA_1401 bacterial peptide chain release factor 1 (bRF-1) K02835 prfA; peptide chain release factor 1
D YPA_0523 ribosome recycling factor K02838 frr; ribosome recycling factor
D YPA_1402 putative protoporphyrinogen oxidase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D YPA_1394 peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D YPA_0660 bacterial translation initiation factor 1 (bIF-1) K02518 infA; translation initiation factor IF-1
D YPA_3928 translation elongation factor P (EF-P) K02356 efp; elongation factor P
D YPA_1000 putative elongation factor P K02356 efp; elongation factor P
D YPA_3922 putative lysyl-tRNA synthetase K04568 epmA; elongation factor P--(R)-beta-lysine ligase [EC:6.3.1.-]
D YPA_3929 L-lysine 2,3-aminomutase K19810 epmB; L-lysine 2,3-aminomutase [EC:5.4.3.-]
D YPA_2089 hypothetical protein K09906 epmC; elongation factor P hydroxylase [EC:1.14.-.-]
D YPA_0380 bacterial peptide chain release factor 2 (bRF-2) K02836 prfB; peptide chain release factor 2
D YPA_3854 bacterial peptide chain release factor 3 (bRF-3) K02837 prfC; peptide chain release factor 3
D YPA_3236 hypothetical protein K09890 arfA; alternative ribosome-rescue factor
D YPA_0543 hypothetical protein K15034 yaeJ; ribosome-associated protein
C 03110 Chaperones and folding catalysts [BR:ypa03110]
D YPA_0658 ATP-dependent Clp protease ATP-binding subunit ClpA K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA
D YPA_2766 Clp ATPase K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D YPA_2651 ATP-dependent Clp protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D YPA_0255 ATP-binding heat shock protein K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D YPA_2612 heat shock protein HtpG K04079 HSP90A; molecular chaperone HtpG
D YPA_4062 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D YPA_2333 chaperone protein HscA K04044 hscA; molecular chaperone HscA
D YPA_2276 putative heat shock protein K04046 yegD; hypothetical chaperone protein
D YPA_3931 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D YPA_4063 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D YPA_4090 DnaJ-like protein K05801 djlA; DnaJ like chaperone protein
D YPA_2334 chaperone protein HscB K04082 hscB; molecular chaperone HscB
D YPA_3330 heat-shock chaperonin K04083 hslO; molecular chaperone Hsp33
D YPA_0585 heat shock protein GrpE K03687 GRPE; molecular chaperone GrpE
D YPA_3000 heat shock protein K04080 ibpA; molecular chaperone IbpA
D YPA_3001 heat shock protein K04081 ibpB; molecular chaperone IbpB
D YPA_3329 heat shock protein 15 K04762 hslR; ribosome-associated heat shock protein Hsp15
D YPA_3932 10 kDa chaperonin K04078 groES; chaperonin GroES
D YPA_2881 global stress requirement protein GsrA K04771 degP; serine protease Do [EC:3.4.21.107]
D YPA_0052 membrane protease FtsH catalytic subunit K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D YPA_4172 ATP synthase subunit B protein K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D YPA_1810 putative chaperone protein K07346 fimC; fimbrial chaperone protein
D YPA_1824 putative chaperone protein K07346 fimC; fimbrial chaperone protein
D YPA_0141 putative fimbrial chaperone K07346 fimC; fimbrial chaperone protein
D YPA_3475 protein translocase subunit secB K03071 secB; preprotein translocase subunit SecB
D YPA_3468 hypothetical protein K06006 cpxP; periplasmic protein CpxP/Spy
D YPA_1083 conserved hypothetical protein K07803 zraP; zinc resistance-associated protein
D YPA_2402 hypothetical protein K19778 hdeB; acid stress chaperone HdeB
D YPA_2822 hypothetical protein K23349 dmsD; putative dimethyl sulfoxide reductase chaperone
D YPA_2157 hypothetical protein K23349 dmsD; putative dimethyl sulfoxide reductase chaperone
D YPA_2464 beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D YPA_3302 peptidyl-prolyl cis-trans isomerase A K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D YPA_2569 peptidyl-prolyl cis-trans isomerase B K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D YPA_2648 peptidyl-prolyl cis-trans isomerase D K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D YPA_3277 peptidyl-prolyl cis-trans isomerase K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]
D YPA_0082 FKBP-type peptidyl-prolyl cis-trans isomerase K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8]
D YPA_4070 FKBP-type peptidyl-prolyl cis-trans isomerase K03774 slpA; FKBP-type peptidyl-prolyl cis-trans isomerase SlpA [EC:5.2.1.8]
D YPA_3279 peptidyl-prolyl cis-trans isomerase K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D YPA_0145 peptidyl-prolyl cis-trans isomerase C K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
D YPA_4088 survival protein SurA precursor (peptidyl-prolyl cis-trans isomerase) K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D YPA_0150 thioredoxin 1 K03671 TXN; thioredoxin
D YPA_2761 thioredoxin 2 K03672 trxC; thioredoxin 2 [EC:1.8.1.8]
D YPA_2577 putative thioredoxin K05838 ybbN; putative thioredoxin
D YPA_0618 glutaredoxin 1 K03674 grxA; glutaredoxin 1
D YPA_3476 glutaredoxin K03676 grxC; glutaredoxin 3
D YPA_1729 hypothetical protein K07390 grxD; monothiol glutaredoxin
D YPA_3526 secreted thiol:disulfide interchange protein DsbA K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D YPA_1501 disulfide bond formation protein B K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9]
D YPA_0378 thiol:disulfide interchange protein DsbC K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D YPA_3937 thiol:disulfide interchange protein K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16]
D YPA_2104 thiol:disulfide interchange protein DsbE K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE
C 04131 Membrane trafficking [BR:ypa04131]
D YPA_2323 nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D YPA_1514 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D YPA_1041 phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D YPA_1447 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D YPA_1738 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D YPA_2612 heat shock protein HtpG K04079 HSP90A; molecular chaperone HtpG
C 04121 Ubiquitin system [BR:ypa04121]
C 03051 Proteasome [BR:ypa03051]
D YPA_2612 heat shock protein HtpG K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:ypa03032]
D YPA_0559 RNase HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D YPA_3604 bacterial nucleoid protein HU alpha subunit K05787 hupA; DNA-binding protein HU-alpha
D YPA_2649 bacterial nucleoid protein HU beta subunit K03530 hupB; DNA-binding protein HU-beta
D YPA_1771 integration host factor alpha-subunit K04764 ihfA; integration host factor subunit alpha
D YPA_0684 integration host factor beta-subunit K05788 ihfB; integration host factor subunit beta
D YPA_4143 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D YPA_3965 primary replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D YPA_3146 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D YPA_3960 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D YPA_MT0059 DNA polymerase III K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D YPA_0535 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D YPA_4142 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D YPA_2943 DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D YPA_2489 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D YPA_1919 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D YPA_0560 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D YPA_2616 DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D YPA_3856 DNA polymerase III, psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D YPA_1157 DNA polymerase III, theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D YPA_0534 RNase HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D YPA_3525 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D YPA_3501 putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D YPA_2178 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D YPA_1625 DNA replication terminus site binding protein K10748 tus; DNA replication terminus site-binding protein
D YPA_3315 DNA adenine methylase Dam K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D YPA_2413 negative regulator of replication initiation SeqA K03645 seqA; negative modulator of initiation of replication
D YPA_2262 regulatory inactivation of DnaA Hda protein K10763 hda; DnaA-homolog protein
D YPA_0930 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D YPA_4140 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D YPA_3120 DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D YPA_3123 DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D YPA_1577 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D YPA_1522 DNA topoisomerase III K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:ypa03036]
D YPA_2452 RNAse III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D YPA_1533 nucleoid protein H-NS K03746 hns; DNA-binding protein H-NS
D YPA_3604 bacterial nucleoid protein HU alpha subunit K05787 hupA; DNA-binding protein HU-alpha
D YPA_2649 bacterial nucleoid protein HU beta subunit K03530 hupB; DNA-binding protein HU-beta
D YPA_1771 integration host factor alpha-subunit K04764 ihfA; integration host factor subunit alpha
D YPA_0684 integration host factor beta-subunit K05788 ihfB; integration host factor subunit beta
D YPA_4047 transcriptional regulator, AraC family K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D YPA_4143 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D YPA_3752 DnaA-interacting protein DiaA K12961 diaA; DnaA initiator-associating protein
D YPA_0736 hypothetical protein K11940 hspQ; heat shock protein HspQ
D YPA_2002 putative DNA-binding protein K04047 dps; starvation-inducible DNA-binding protein
D YPA_3666 DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D YPA_3911 RNA-binding protein Hfq K03666 hfq; host factor-I protein
D YPA_0351 chromosome initiation inhibitor K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D YPA_0665 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D YPA_1872 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D YPA_0980 putative nucleoid-associated protein K06899 ndpA; nucleoid-associated protein
D YPA_0699 bacterial condensin subunit MukB K03632 mukB; chromosome partition protein MukB
D YPA_0698 bacterial condensin subunit MukE K03804 mukE; chromosome partition protein MukE
D YPA_0697 bacterial condensin subunit MukF K03633 mukF; chromosome partition protein MukF
D YPA_3542 cell division protein FtsA K03590 ftsA; cell division protein FtsA
D YPA_2781 cell division protein FtsB K05589 ftsB; cell division protein FtsB
D YPA_0209 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D YPA_3552 peptidoglycan synthetase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D YPA_0666 DNA translocase FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D YPA_3553 putative cell division protein K03586 ftsL; cell division protein FtsL
D YPA_0257 cell division protein FtsN K03591 ftsN; cell division protein FtsN
D YPA_3543 cell division protein FtsQ K03589 ftsQ; cell division protein FtsQ
D YPA_3547 cell division protein FtsW K03588 ftsW; cell division protein FtsW
D YPA_0210 cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D YPA_3541 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D YPA_2179 cell division protein ZipA K03528 zipA; cell division protein ZipA
D YPA_0355 cell division protein ZapA K09888 zapA; cell division protein ZapA
D YPA_3449 hypothetical protein K09892 zapB; cell division protein ZapB
D YPA_0711 hypothetical protein K18657 zapC; cell division protein ZapC
D YPA_2932 hypothetical protein K18778 zapD; cell division protein ZapD
D YPA_3739 hypothetical protein K06916 zapE; cell division protein ZapE
D YPA_0083 hypothetical protein K07269 ytfB; cell division protein YtfB
D YPA_3914 putative N-acetylmuramoyl-L-alanine amidase-family protein K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D YPA_0495 N-acetylmuramoyl-L-alanine amidase AmiC precursor K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D YPA_2985 multidrug efflux protein K03585 acrA; membrane fusion protein, multidrug efflux system
D YPA_2627 multidrug efflux protein K03585 acrA; membrane fusion protein, multidrug efflux system
D YPA_1461 septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D YPA_1460 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D YPA_1459 cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor
D YPA_0728 SOS cell division inhibitor SulA K13053 sulA; cell division inhibitor SulA
D YPA_3496 cell division inhibitor SlmA K05501 slmA; TetR/AcrR family transcriptional regulator
D YPA_2413 negative regulator of replication initiation SeqA K03645 seqA; negative modulator of initiation of replication
D YPA_3678 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D YPA_3679 rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC
D YPA_3680 rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD
D YPA_2494 rod shape-determining protein K05837 rodA; rod shape determining protein RodA
D YPA_CD0048 plasmid partitioning transcription repressor K03496 parA; chromosome partitioning protein
D YPA_MT0081 partitioning protein A K03496 parA; chromosome partitioning protein
D YPA_MT0090 DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D YPA_MT0082 partitioning protein B K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D YPA_CD0049 plasmid partitioning control protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D YPA_3120 DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D YPA_3123 DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D YPA_4175 glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D YPA_4174 glucose inhibited division protein B K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D YPA_0179 tyrosine recombinase XerC subunit K03733 xerC; integrase/recombinase XerC
D YPA_0377 tyrosine recombinase XerD subunit K04763 xerD; integrase/recombinase XerD
D YPA_0817 hypothetical protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D YPA_3157 conserved hypothetical protein K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D YPA_3523 cell division checkpoint GTPase YihA K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:ypa03400]
D YPA_1648 putative methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D YPA_2426 Deoxyribodipyrimidine photo-lyase type I K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D YPA_2437 Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D YPA_0312 A/G-specific DNA-adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D YPA_1598 DNA-(apurinic or apyrimidinic site) lyase / endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D YPA_3536 mutator protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D YPA_3495 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D YPA_3471 DNA-O6-methylguanine--protein-cysteine S-methyltransferase / Transcriptional regulator Ada K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D YPA_1210 putative glycosidase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D YPA_3010 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D YPA_3490 DNA-(apurinic or apyrimidinic site) lyase / Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D YPA_1525 Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D YPA_1023 Endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D YPA_3606 Endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
D YPA_0379 exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D YPA_3501 putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D YPA_2178 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D YPA_3525 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D YPA_3961 Excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
D YPA_1063 Excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
D YPA_1244 Excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
D YPA_0181 ATP-dependent DNA helicase UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D YPA_3619 DNA-directed RNA polymerase beta chain K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D YPA_3618 DNA-directed RNA polymerase beta' chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D YPA_3239 DNA-directed RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D YPA_3503 DNA-directed RNA polymerase, omega chain K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D YPA_1900 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D YPA_2789 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D YPA_3913 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D YPA_0481 DNA mismatch repair protein MutH K03573 mutH; DNA mismatch repair protein MutH
D YPA_0853 Exodeoxyribonuclease I subunit C K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D YPA_2313 Exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D YPA_2669 Exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D YPA_MT0059 DNA polymerase III K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D YPA_0535 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D YPA_4142 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D YPA_2943 DNA polymerase III, chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D YPA_2489 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D YPA_1919 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D YPA_0560 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D YPA_2616 DNA polymerase III, gamma subunit / DNA polymerase III, tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D YPA_3856 DNA polymerase III, psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D YPA_1157 DNA polymerase III, theta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D YPA_3960 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D YPA_3315 DNA adenine methylase Dam K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D YPA_0492 DNA helicase/exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D YPA_0490 DNA helicase/exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D YPA_0493 DNA helicase/exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D YPA_2838 RecA protein K03553 recA; recombination protein RecA
D YPA_1440 Holliday junction DNA helicase subunit RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D YPA_1441 Holliday junction DNA helicase subunit RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D YPA_1438 Holliday junction endonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D YPA_0259 replication restart DNA helicase PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D YPA_0088 restart primosome assembly protein PriB K02686 priB; primosomal replication protein N
D YPA_2619 restart primosome assembly protein PriC K04067 priC; primosomal replication protein N''
D YPA_2700 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50
D YPA_2699 Exodeoxyribonuclease I subunit D K03547 sbcD; DNA repair protein SbcD/Mre11
D YPA_3841 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D YPA_4141 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
D YPA_3506 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D YPA_2454 DNA replication and repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D YPA_2614 DNA replication and repair protein RecR K06187 recR; recombination protein RecR
D YPA_0583 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D YPA_2705 recombination associated protein RdgC K03554 rdgC; recombination associated protein RdgC
D YPA_1965 CRISPR-associated protein, Cas1 family K15342 cas1; CRISP-associated protein Cas1
D YPA_0983 putative DEAD box helicase family protein K19789 radD; DNA repair protein RadD
D YPA_3301 hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
D YPA_0930 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D YPA_4140 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D YPA_1577 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D YPA_3604 bacterial nucleoid protein HU alpha subunit K05787 hupA; DNA-binding protein HU-alpha
D YPA_2649 bacterial nucleoid protein HU beta subunit K03530 hupB; DNA-binding protein HU-beta
D YPA_3666 DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D YPA_1771 integration host factor alpha-subunit K04764 ihfA; integration host factor subunit alpha
D YPA_0684 integration host factor beta-subunit K05788 ihfB; integration host factor subunit beta
D YPA_0189 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D YPA_1533 nucleoid protein H-NS K03746 hns; DNA-binding protein H-NS
D YPA_2721 DNA-damage-inducible protein P K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D YPA_3970 SOS-response transcriptional repressor, LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D YPA_3577 DNA damage-inducible DNA polymerase II K02336 polB; DNA polymerase II [EC:2.7.7.7]
D YPA_1941 DNA-damage-inducible protein I K12149 dinI; DNA-damage-inducible protein I
D YPA_2839 putative regulatory protein K03565 recX; regulatory protein
D YPA_0146 ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D YPA_0732 putative helicase IV K03658 helD; DNA helicase IV [EC:5.6.2.4]
D YPA_0920 putative ATP-dependent helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D YPA_1454 putative DEAD box family helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D YPA_0928 ribonucleoside-diphosphate reductase class Ia alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D YPA_2377 ribonucleoside-diphosphate reductase class Ib alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D YPA_0927 ribonucleoside-diphosphate reductase class Ia beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D YPA_2376 ribonucleoside-diphosphate reductase class Ib beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:ypa03029]
D YPA_0046 bacterial translation initiation factor 2 (bIF-2) K02519 infB; translation initiation factor IF-2
D YPA_1777 bacterial translation initiation factor 3 (bIF-3) K02520 infC; translation initiation factor IF-3
D YPA_0520 translation elongation factor Ts (EF-Ts) K02357 tsf; elongation factor Ts
D YPA_3626 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu
D YPA_3269 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu
D YPA_3270 translation elongation factor 2 (EF-2/EF-G) K02355 fusA; elongation factor G
D YPA_2453 putative GTP-binding protein K03595 era; GTPase
D YPA_1715 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D YPA_2487 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D YPA_1435 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D YPA_1428 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D YPA_3960 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D YPA_0528 putative surface antigen K07277 SAM50; outer membrane protein insertion porin family
D YPA_4062 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D YPA_0585 heat shock protein GrpE K03687 GRPE; molecular chaperone GrpE
D YPA_3931 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D YPA_3932 10 kDa chaperonin K04078 groES; chaperonin GroES
D YPA_4063 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D YPA_2337 putative aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YPA_1498 putative aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YPA_2334 chaperone protein HscB K04082 hscB; molecular chaperone HscB
D YPA_1729 hypothetical protein K07390 grxD; monothiol glutaredoxin
D YPA_0817 hypothetical protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D YPA_2662 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D YPA_4147 protein translocase subunit yidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D YPA_2612 heat shock protein HtpG K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:ypa02000]
D YPA_1291 lipoprotein inner membrane ABC-transporter K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D YPA_3379 ABC-transporter transmembrane protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D YPA_1292 inner membrane ABC-transporter YbtQ K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D YPA_3380 ABC-transporter transmembrane protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D YPA_0686 transport ATP-binding protein K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D YPA_2640 ABC transporter (ATP-binding protein) K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D YPA_2639 ATP transporter (ATP-binding protein) K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D YPA_1608 hypothetical protein K12530 rtxB; ATP-binding cassette, subfamily B, bacterial RtxB
D YPA_1612 putative toxin transport protein K12531 rtxE; ATP-binding cassette, subfamily B, bacterial RtxE
D YPA_3447 colicin V processing peptidase. Cysteine peptidase. MEROPS family C39 K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB
D YPA_2511 putative ABC transport protein K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter
D YPA_1109 putative ABC transporter (ATP-binding protein) K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D YPA_0102 ABC transporter protein K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D YPA_0662 transport ATP-binding protein K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D YPA_0663 transport ATP-binding protein K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D YPA_0655 putative ABC transporter ATP-binding protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D YPA_2190 putative ABC transporter, ATP-binding protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D YPA_0714 ABC transporter ATP-binding protein K15738 uup; ABC transport system ATP-binding/permease protein
D YPA_2204 thiosulfate-binding protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein
D YPA_3462 exported sulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D YPA_2203 sulfate transport system permease protein CysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D YPA_2202 sulfate transport system permease protein CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D YPA_2201 sulfate transport ATP-binding protein K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D YPA_3461 hypothetical protein K02020 modA; molybdate transport system substrate-binding protein
D YPA_1052 molybdate-binding periplasmic protein precursor K02020 modA; molybdate transport system substrate-binding protein
D YPA_1053 molybdenum transport system permease protein ModB K02018 modB; molybdate transport system permease protein
D YPA_1054 molybdenum transport ATP-binding protein ModC K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D YPA_1049 putative molybdenum transport ATP-binding protein modF K05776 modF; molybdate transport system ATP-binding protein
D YPA_3290 putative taurine-binding periplasmic protein precursor K15551 tauA; taurine transport system substrate-binding protein
D YPA_3288 putative taurine transport system permease protein K15552 tauC; taurine transport system permease protein
D YPA_3289 putative taurine transport ATP-binding protein K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7]
D YPA_3637 putative aliphatic sulfonates binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D YPA_3639 putative aliphatic sulfonates transport permease protein K15554 ssuC; sulfonate transport system permease protein
D YPA_3640 putative aliphatic sulfonates transport ATP-binding protein K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D YPA_2241 hypothetical protein K02012 afuA; iron(III) transport system substrate-binding protein
D YPA_2148 iron(III)-binding periplasmic protein K02012 afuA; iron(III) transport system substrate-binding protein
D YPA_2240 putative binding protein-dependent transport system, inner-membrane component K02011 afuB; iron(III) transport system permease protein
D YPA_2149 iron(III)-transport system permease K02011 afuB; iron(III) transport system permease protein
D YPA_2150 iron(III)-transport ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D YPA_2239 ABC-transporter, ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D YPA_3573 thiamine-binding periplasmic protein K02064 thiB; thiamine transport system substrate-binding protein
D YPA_3574 thiamine transport system permease protein K02063 thiP; thiamine transport system permease protein
D YPA_3575 thiamine transport ATP-binding protein K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]
D YPA_0621 putrescine-binding periplasmic protein precursor K11073 potF; putrescine transport system substrate-binding protein
D YPA_0624 putrescine transport system permease protein K11074 potI; putrescine transport system permease protein
D YPA_0623 putrescine transport system permease protein K11075 potH; putrescine transport system permease protein
D YPA_0622 putrescine transport ATP-binding protein K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16]
D YPA_2282 putative transport system periplasmic protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D YPA_1411 hypothetical protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D YPA_2280 putative ABC transporter permease K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D YPA_1412 putative binding-protein-dependent transport system membrane protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D YPA_2281 putative ABC transporter permease K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D YPA_1413 putative binding-protein-dependent transport system membrane protein K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D YPA_2285 putitive ABC-transporter ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D YPA_1414 hypothetical protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D YPA_2373 glycine betaine-binding periplasmic protein K02002 proX; glycine betaine/proline transport system substrate-binding protein
D YPA_2374 glycine betaine/L-proline transport system permease K02001 proW; glycine betaine/proline transport system permease protein
D YPA_2375 glycine betaine/L-proline transport ATP-binding protein K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D YPA_0907 hypothetical protein K05845 opuC; osmoprotectant transport system substrate-binding protein
D YPA_0908 ABC type periplasmic choline/glycine/betaine binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein
D YPA_0909 putative ABC transport integral membrane subunit K05846 opuBD; osmoprotectant transport system permease protein
D YPA_0911 putative ABC transport integral membrane subunit K05846 opuBD; osmoprotectant transport system permease protein
D YPA_0910 putative ABC transport ATP-binding subunit K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D YPA_1634 hypothetical protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D YPA_1635 putative transport system permease K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D YPA_1636 taurine ATP-binding component of a transport system K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D YPA_0030 maltose-binding periplasmic protein precursor K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D YPA_0029 maltose transport system permease protein MalF K10109 malF; maltose/maltodextrin transport system permease protein
D YPA_0028 maltose transport system permease protein MalG K10110 malG; maltose/maltodextrin transport system permease protein
D YPA_0032 maltose/maltodextrin transport ATP-binding protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPA_1976 putative mannitol transport ATP-binding protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPA_0413 sugar transport ATP-binding protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPA_1273 ABC-type sugar transport systems, ATPase components K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPA_1272 putative binding-protein-dependent transport system, ATP-binding component K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPA_3181 putative transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPA_2971 putative sugar ABC transporter, ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPA_0414 putative sugar-binding protein K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein
D YPA_0415 putative maltodextrin transport permease K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D YPA_0416 putative maltodextrin permease protein K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D YPA_1615 L-arabinose-binding periplasmic protein precursor K10537 araF; L-arabinose transport system substrate-binding protein
D YPA_1617 L-arabinose transport system permease protein K10538 araH; L-arabinose transport system permease protein
D YPA_1616 L-arabinose transport ATP-binding protein K10539 araG; L-arabinose transport system ATP-binding protein [EC:7.5.2.12]
D YPA_1802 putative sugar-binding protein K10192 togB; oligogalacturonide transport system substrate-binding protein
D YPA_1799 putative ABC sugar transporter (permease) K10193 togM; oligogalacturonide transport system permease protein
D YPA_1800 putative sugar ABC transporter (permease) K10194 togN; oligogalacturonide transport system permease protein
D YPA_1801 putative sugar ABC transporter K10195 togA; oligogalacturonide transport system ATP-binding protein
D YPA_0802 galactose-binding protein K10540 mglB; methyl-galactoside transport system substrate-binding protein
D YPA_0804 galactoside permease K10541 mglC; methyl-galactoside transport system permease protein
D YPA_0803 galactoside transport ATP-binding protein K10542 mglA; methyl-galactoside transport system ATP-binding protein [EC:7.5.2.11]
D YPA_4127 sugar-binding periplasmic protein K10543 xylF; D-xylose transport system substrate-binding protein
D YPA_4125 sugar transport system permease protein K10544 xylH; D-xylose transport system permease protein
D YPA_4126 sugar transport ATP-binding protein K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10]
D YPA_0305 putative sugar ABC transporter periplasmic binding protein K10439 rbsB; ribose transport system substrate-binding protein
D YPA_1996 sugar binding protein precursor K10439 rbsB; ribose transport system substrate-binding protein
D YPA_3790 sugar-binding transport protein K10439 rbsB; ribose transport system substrate-binding protein
D YPA_0307 putative sugar transport system permease protein K10440 rbsC; ribose transport system permease protein
D YPA_1994 putative sugar transport system, permease protein K10440 rbsC; ribose transport system permease protein
D YPA_3791 sugar transport system permease protein K10440 rbsC; ribose transport system permease protein
D YPA_0306 putative sugar transport ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D YPA_1995 putative sugar transport system, ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D YPA_3792 sugar transport ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D YPA_0114 putative periplasmic protein precursor K23508 ytfQ; galactofuranose transport system substrate-binding protein
D YPA_0117 putative sugar transport system permease K23509 ytfT; galactofuranose transport system permease protein
D YPA_0116 putative sugar transport system permease K23509 ytfT; galactofuranose transport system permease protein
D YPA_0115 putative sugar transport system ATP-binding protein K10820 ytfR; galactofuranose transport system ATP-binding protein [EC:7.5.2.9]
D YPA_2826 putative sugar ABC transporter, periplasmic protein K17202 eryG; erythritol transport system substrate-binding protein
D YPA_2829 putative sugar ABC transporter, permease protein K17203 eryF; erythritol transport system permease protein
D YPA_2828 putative sugar ABC transporter, ATP-binding protein K17204 eryE; erythritol transport system ATP-binding protein
D YPA_0410 sugar-binding periplasmic protein K17205 xltC; putative xylitol transport system substrate-binding protein
D YPA_0411 sugar transport system permease K17206 xltB; putative xylitol transport system permease protein
D YPA_0412 sugar transport ATP-binding protein K17207 xltA; putative xylitol transport system ATP-binding protein
D YPA_2520 putative sugar-binding periplasmic protein K17208 ibpA; inositol transport system substrate-binding protein
D YPA_2518 sugar transport system permease protein K17209 iatP; inositol transport system permease protein
D YPA_2519 sugar transport ATP-binding protein K17210 iatA; inositol transport system ATP-binding protein
D YPA_0228 glycerol-3-phosphate-binding periplasmic protein K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein
D YPA_0229 sn-glycerol-3-phosphate transport system, permease protein K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein
D YPA_0230 sn-glycerol-3-phosphate transport system, permease protein K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein
D YPA_0231 sn-glycerol-3-phosphate transport, ATP-binding protein K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10]
D YPA_3876 putative periplasmic solute-binding protein K10555 lsrB; AI-2 transport system substrate-binding protein
D YPA_3874 putative ABC transporter permease protein K10556 lsrC; AI-2 transport system permease protein
D YPA_3875 putative ABC transporter permease protein K10557 lsrD; AI-2 transport system permease protein
D YPA_3873 putative ABC transporter ATP-binding protein K10558 lsrA; AI-2 transport system ATP-binding protein
D YPA_3730 putative membrane protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D YPA_3729 putative membrane protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D YPA_3728 putative ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D YPA_3731 hypothetical protein K07323 mlaC; phospholipid transport system substrate-binding protein
D YPA_3732 putative anti-sigma B factor antagonist K07122 mlaB; phospholipid transport system transporter-binding protein
D YPA_3178 putative sugar binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D YPA_2974 putative sugar binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D YPA_1973 putative solute-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D YPA_1269 putative exported solute-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D YPA_3177 putative permease protein K02025 ABC.MS.P; multiple sugar transport system permease protein
D YPA_2973 sugar transport system, permease protein K02025 ABC.MS.P; multiple sugar transport system permease protein
D YPA_1972 sugar ABC transporter, permease protein K02025 ABC.MS.P; multiple sugar transport system permease protein
D YPA_1270 putative binding-protein-dependent transport system, inner membrane component K02025 ABC.MS.P; multiple sugar transport system permease protein
D YPA_3176 putative permease K02026 ABC.MS.P1; multiple sugar transport system permease protein
D YPA_2972 sugar transport system, permease protein K02026 ABC.MS.P1; multiple sugar transport system permease protein
D YPA_1971 sugar ABC transporter, permease protein K02026 ABC.MS.P1; multiple sugar transport system permease protein
D YPA_1271 putative binding-protein-dependent transport system, inner membrane component K02026 ABC.MS.P1; multiple sugar transport system permease protein
D YPA_2816 putative sugar ABC transporter, periplasmic protein K02058 ABC.SS.S; simple sugar transport system substrate-binding protein
D YPA_3646 putative periplasmic binding protein K02058 ABC.SS.S; simple sugar transport system substrate-binding protein
D YPA_0812 putative sugar ABC transporter K02058 ABC.SS.S; simple sugar transport system substrate-binding protein
D YPA_1011 putative periplasmic carbohydrate-binding transport protein K02058 ABC.SS.S; simple sugar transport system substrate-binding protein
D YPA_1188 putative sugar-binding periplasmic protein K02058 ABC.SS.S; simple sugar transport system substrate-binding protein
D YPA_2812 putative sugar ABC transporter, permease protein K02057 ABC.SS.P; simple sugar transport system permease protein
D YPA_2813 putative sugar ABC transporter, permease protein K02057 ABC.SS.P; simple sugar transport system permease protein
D YPA_3633 putative carbohydrate transport protein K02057 ABC.SS.P; simple sugar transport system permease protein
D YPA_3648 putative branched-chain amino acid transport system, permease component K02057 ABC.SS.P; simple sugar transport system permease protein
D YPA_3649 putative ABC transporter, permease protein K02057 ABC.SS.P; simple sugar transport system permease protein
D YPA_0848 ribose transport system, permease protein K02057 ABC.SS.P; simple sugar transport system permease protein
D YPA_1013 putative ABC transport integral membrane subunit K02057 ABC.SS.P; simple sugar transport system permease protein
D YPA_1187 putative sugar transport system permease protein K02057 ABC.SS.P; simple sugar transport system permease protein
D YPA_1190 putative sugar ABC transporter, permease K02057 ABC.SS.P; simple sugar transport system permease protein
D YPA_2814 putative sugar ABC transporter, ATP-binding protein K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPA_3647 ABC transporter ATP binding protein K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPA_0849 ATPase K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPA_0850 hypothetical protein K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPA_1012 putative ABC transport ATP-binding subunit K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPA_1189 putative sugar ABC transporter, ATP-binding protein K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPA_2696 phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein
D YPA_4162 putative phosphate-binding periplasmic protein K02040 pstS; phosphate transport system substrate-binding protein
D YPA_2272 putative phosphate transport system permease K02037 pstC; phosphate transport system permease protein
D YPA_4161 putative phosphate transport system permease K02037 pstC; phosphate transport system permease protein
D YPA_2271 putative phosphate transport system permease K02038 pstA; phosphate transport system permease protein
D YPA_4160 putative phosphate transport system permease K02038 pstA; phosphate transport system permease protein
D YPA_2270 putative phosphate transport ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D YPA_4159 putative phosphate transport ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D YPA_0895 putative substrate-binding periplasmic transport protein K02044 phnD; phosphonate transport system substrate-binding protein
D YPA_0896 putative ABC transport membrane permease K02042 phnE; phosphonate transport system permease protein
D YPA_0897 putative ABC transport membrane permease K02042 phnE; phosphonate transport system permease protein
D YPA_0894 putative ABC transport ATP-binding subunit K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D YPA_2066 histidine transport system permease protein HisM K10015 hisM; histidine transport system permease protein
D YPA_2067 histidine transport system permease protein HisQ K10016 hisQ; histidine transport system permease protein
D YPA_2065 histidine transport ATP-binding protein HisP K10017 hisP; histidine transport system ATP-binding protein [EC:7.4.2.1]
D YPA_2068 histidine-binding periplasmic protein K10014 hisJ; histidine transport system substrate-binding protein
D YPA_2004 putative glutamine-binding periplasmic protein K10036 glnH; glutamine transport system substrate-binding protein
D YPA_2005 putative glutamine transport system permease K10037 glnP; glutamine transport system permease protein
D YPA_2006 putative glutamine transport ATP-binding protein K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1]
D YPA_0627 hypothetical protein K09996 artJ; arginine transport system substrate-binding protein
D YPA_0638 arginine-binding periplasmic protein 1 precursor K09997 artI; arginine transport system substrate-binding protein
D YPA_0636 arginine transport system permease protein K09998 artM; arginine transport system permease protein
D YPA_0637 arginine transport system permease protein K09999 artQ; arginine transport system permease protein
D YPA_0639 arginine transport ATP-binding protein K10000 artP; arginine transport system ATP-binding protein [EC:7.4.2.1]
D YPA_2482 putative amino acid-binding protein precursor K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D YPA_2484 putative glutamate/aspartate transport system permease K10002 gltK; glutamate/aspartate transport system permease protein
D YPA_2483 putative glutamate/aspartate transport system permease K10003 gltJ; glutamate/aspartate transport system permease protein
D YPA_2485 putative glutamate/aspartate transport ATP-binding protein K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1]
D YPA_1222 putative cystine-binding periplasmic protein K02424 tcyA; L-cystine transport system substrate-binding protein
D YPA_1223 putative amino-acid ABC transporter (permease) K10009 tcyB; L-cystine transport system permease protein
D YPA_1224 putative amino-acid ABC transporter (ATP-binding protein) K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D YPA_0214 branched-chain amino acid-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D YPA_0217 high-affinity branched-chain amino acid transport system, permease protein K01997 livH; branched-chain amino acid transport system permease protein
D YPA_0218 high-affinity branched-chain amino acid transport system, permease protein K01998 livM; branched-chain amino acid transport system permease protein
D YPA_0219 high-affinity branched-chain amino acid transport, ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D YPA_0220 high-affinity branched-chain amino acid transport, ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D YPA_1034 hypothetical protein K02073 metQ; D-methionine transport system substrate-binding protein
D YPA_0548 putative lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein
D YPA_1036 putative ABC transport integral membrane subunit K02072 metI; D-methionine transport system permease protein
D YPA_0549 ABC transporter permease protein K02072 metI; D-methionine transport system permease protein
D YPA_0550 ABC transporter ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein
D YPA_1035 putative ABC transport ATP-binding subunit K02071 metN; D-methionine transport system ATP-binding protein
D YPA_0899 putative substrate-binding periplasmic transport protein K11959 urtA; urea transport system substrate-binding protein
D YPA_0900 putative Branched-chain amino acid transport system, permease component K11960 urtB; urea transport system permease protein
D YPA_0901 putative Branched-chain amino acid transport system, permease component K11961 urtC; urea transport system permease protein
D YPA_0902 putative ABC transport ATP-binding subunit K11962 urtD; urea transport system ATP-binding protein
D YPA_0903 putative ABC transport ATP-binding subunit K11963 urtE; urea transport system ATP-binding protein
D YPA_1062 putative amino acid transporter K11963 urtE; urea transport system ATP-binding protein
D YPA_2748 putative amino acid ABC transporter, periplasmic protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D YPA_4156 putative periplasmic solute-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D YPA_2746 putative amino acid ABC transporter, permease protein K02029 ABC.PA.P; polar amino acid transport system permease protein
D YPA_2747 putative amino acid ABC transporter, permease protein K02029 ABC.PA.P; polar amino acid transport system permease protein
D YPA_4154 putative amino acid transport system permease K02029 ABC.PA.P; polar amino acid transport system permease protein
D YPA_4155 ABC transporter permease K02029 ABC.PA.P; polar amino acid transport system permease protein
D YPA_2745 putative amino acid ABC transporter, ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D YPA_1539 periplasmic oligopeptide-binding protein precursor K15580 oppA; oligopeptide transport system substrate-binding protein
D YPA_1688 putative periplasmic murein peptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D YPA_1540 oligopeptide transport system permease protein K15581 oppB; oligopeptide transport system permease protein
D YPA_1541 oligopeptide transport system permease protein K15582 oppC; oligopeptide transport system permease protein
D YPA_1542 oligopeptide transport ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein
D YPA_1543 oligopeptide transport ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D YPA_3830 periplasmic dipeptide transport protein K12368 dppA; dipeptide transport system substrate-binding protein
D YPA_3829 dipeptide transport system permease protein K12369 dppB; dipeptide transport system permease protein
D YPA_3828 dipeptide transport system permease protein K12370 dppC; dipeptide transport system permease protein
D YPA_3827 dipeptide transport ATP-binding protein K12371 dppD; dipeptide transport system ATP-binding protein
D YPA_3826 dipeptide transport ATP-binding protein K12372 dppF; dipeptide transport system ATP-binding protein
D YPA_1704 peptide transport periplasmic protein precursor K19226 sapA; cationic peptide transport system substrate-binding protein
D YPA_1705 peptide transport system permease protein K19227 sapB; cationic peptide transport system permease protein
D YPA_1706 peptide transport system permease protein K19228 sapC; cationic peptide transport system permease protein
D YPA_1707 peptide transport system ATP-binding protein K19229 sapD; cationic peptide transport system ATP-binding protein
D YPA_1708 peptide transport system ATP-binding protein K19230 sapF; cationic peptide transport system ATP-binding protein
D YPA_2950 hypothetical protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D YPA_2951 ABC transporter, periplasmic oligo-dipeptide/nickel binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D YPA_2387 putative solute-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D YPA_2952 putative transporter, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D YPA_2388 putative membrane protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D YPA_2953 putative transporter, permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D YPA_2389 binding-protein-dependent transport protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D YPA_2954 putative ABC transporter transporter, ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D YPA_2390 putative transport ATPase K02031 ddpD; peptide/nickel transport system ATP-binding protein
D YPA_2955 putative ABC transporter, ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein
D YPA_2391 putative transport ATPase K02032 ddpF; peptide/nickel transport system ATP-binding protein
D YPA_0991 putative substrate-binding transport protein K13893 yejA; microcin C transport system substrate-binding protein
D YPA_0990 putative ABC transporter integral membrane subunit K13894 yejB; microcin C transport system permease protein
D YPA_0989 putative ABC transporter integral membrane subunit K13895 yejE; microcin C transport system permease protein
D YPA_0988 putative ABC transporter ATP-binding subunit K13896 yejF; microcin C transport system ATP-binding protein
D YPA_2891 ferrichrome-binding periplasmic protein precursor K23227 fhuD; ferric hydroxamate transport system substrate-binding protein
D YPA_2890 ferrichrome transport system permease protein FhuB K23228 fhuB; ferric hydroxamate transport system permease protein
D YPA_2892 ferrichrome transport ATP-binding protein FhuC K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16]
D YPA_4001 hemin-binding periplasmic protein K25132 hmuT; heme transport system substrate-binding protein
D YPA_4002 hemin transport system permease protein HmuU K25133 hmuU; heme transport system permease protein
D YPA_4003 hemin transport system ATP-binding protein K10834 hmuV; heme transport system ATP-binding protein [EC:7.6.2.5]
D YPA_3092 periplasmic binding protein K23185 fepB; ferric enterobactin transport system substrate-binding protein
D YPA_0830 putative iron-siderophore transport system, periplasmic binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein
D YPA_0829 putative iron-siderophore transport system, transmembrane component K23186 fepD; iron-siderophore transport system permease protein
D YPA_0828 putative iron-siderophore transport system, membrane permease component K23187 fepG; iron-siderophore transport system permease protein
D YPA_0827 putative iron-siderophore transport system, ATP-binding component K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-]
D YPA_4113 putative iron transport protein K25282 yclQ; iron-siderophore transport system substrate-binding protein
D YPA_4115 putative iron transport permease K25283 yclO; iron-siderophore transport system permease protein
D YPA_4114 putative iron transport permease K25284 yclN; iron-siderophore transport system permease protein
D YPA_4116 putative iron ABC transporter, ATP-binding protein K25285 yclP; iron-siderophore transport system ATP-binding protein [EC:7.2.2.-]
D YPA_1027 putative periplasmic substrate-binding transport protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D YPA_0309 hypothetical protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D YPA_0630 FecCD transport family protein K02015 ABC.FEV.P; iron complex transport system permease protein
D YPA_1028 putative FecCD-family membrane transport protein K02015 ABC.FEV.P; iron complex transport system permease protein
D YPA_0631 putative transport ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D YPA_1029 putative siderophore ABC transporter, ATP-binding subunit K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D YPA_2884 putative priplasmic metal binding protein K06858 btuF; vitamin B12 transport system substrate-binding protein
D YPA_1769 puative vitamin B12 transport system permease protein K06073 btuC; vitamin B12 transport system permease protein
D YPA_1767 putative vitamin B12 transport ATP-binding protein K06074 btuD; vitamin B12 transport system ATP-binding protein [EC:7.6.2.8]
D YPA_1444 exported high-affinity zinc uptake system protein K09815 znuA; zinc transport system substrate-binding protein
D YPA_1442 high-affinity zinc uptake system membrane protein K09816 znuB; zinc transport system permease protein
D YPA_1443 high-affinity zinc uptake system ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D YPA_1783 periplasmic-binding protein K11604 sitA; manganese/iron transport system substrate-binding protein
D YPA_1785 chelated iron transport system membrane protein K11605 sitC; manganese/iron transport system permease protein
D YPA_1786 chelated iron transport system membrane protein K11606 sitD; manganese/iron transport system permease protein
D YPA_1784 ATP-binding transport protein K11607 sitB; manganese/iron transport system ATP-binding protein
D YPA_2941 putative membrane protein K07091 lptF; lipopolysaccharide export system permease protein
D YPA_2940 putative membrane protein K11720 lptG; lipopolysaccharide export system permease protein
D YPA_3722 ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D YPA_1090 ABC transporter multidrug efflux pump, permease subunit K25180 ybhR; drug efflux transport system permease protein
D YPA_1091 ABC transporter multidrug efflux pump, permease subunit K25181 ybhS; drug efflux transport system permease protein
D YPA_1092 ATPase K25182 ybhF; drug efflux transport system ATP-binding protein
D YPA_1093 membrane-fusion protein K25183 ybhG; membrane fusion protein YbhG
D YPA_1899 lipoprotein releasing system, transmembrane protein K09808 lolC_E; lipoprotein-releasing system permease protein
D YPA_1897 lipoprotein releasing system, transmembrane protein K09808 lolC_E; lipoprotein-releasing system permease protein
D YPA_1898 lipoprotein releasing system, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D YPA_1416 putative ABC transporter, ATP-binding subunit K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D YPA_2107 putative heme exporter protein D K02196 ccmD; heme exporter protein D
D YPA_2108 putative heme exporter protein C K02195 ccmC; heme exporter protein C
D YPA_2109 heme exporter protein B K02194 ccmB; heme exporter protein B
D YPA_2110 putative heme exporter protein A K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D YPA_0210 cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D YPA_0209 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D YPA_2907 putative ABC transporter, integral membrane protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D YPA_2908 putative ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D YPA_2573 putative permease K02004 ABC.CD.P; putative ABC transport system permease protein
D YPA_1327 putative membrane protein K02004 ABC.CD.P; putative ABC transport system permease protein
D YPA_1328 putative membrane protein K02004 ABC.CD.P; putative ABC transport system permease protein
D YPA_0795 putative membrane protein K02004 ABC.CD.P; putative ABC transport system permease protein
D YPA_0793 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D YPA_2574 putative ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D YPA_1329 ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D YPA_1747 Iron-regulated ABC transporter ATPase subunit SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein
D YPA_1620 putative membrane protein K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7
D YPA_3391 Sodium:sulfate symporter K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5
D YPA_1737 putative transport protein K26939 norM; MATE family, multidrug efflux pump
D YPA_0867 putative sugar transporter K26937 dinF; MATE family, multidrug efflux pump
D YPA_0879 hypothetical protein K02532 lacY; MFS transporter, OHS family, lactose permease
D YPA_3571 hypothetical protein K03291 MFS.SET; MFS transporter, SET family, sugar efflux transporter
D YPA_1082 MFS family xanthosine permease K11537 xapB; MFS transporter, NHS family, xanthosine permease
D YPA_1080 hypothetical protein K11537 xapB; MFS transporter, NHS family, xanthosine permease
D YPA_4059 putative transport protein K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D YPA_2205 putative sugar transporter K03290 nanT; MFS transporter, SHS family, sialic acid transporter
D YPA_0423 putative sugar transporter K08191 exuT; MFS transporter, ACS family, aldohexuronate transporter
D YPA_3211 ExuT transport protein K08191 exuT; MFS transporter, ACS family, aldohexuronate transporter
D YPA_1140 putative 4-hydroxyphenylacetate permease K02511 hpaX; MFS transporter, ACS family, 4-hydroxyphenylacetate permease
D YPA_0859 putative transmembrane transporter K26580 rhmT; MFS transporter, ACS family, inner membrane transport protein
D YPA_2344 putative transport permease protein K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter
D YPA_3834 putative regulatory protein K07783 uhpC; MFS transporter, OPA family, sugar phosphate sensor protein UhpC
D YPA_0477 putative membrane protein K08227 lplT; MFS transporter, LPLT family, lysophospholipid transporter
D YPA_2656 Beta-lactamase induction signal transducer AmpG K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D YPA_0985 drug resistance translocator protein K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D YPA_1506 putative multidrug resistance protein K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D YPA_3037 multidrug translocase K08160 mdfA; MFS transporter, DHA1 family, multidrug/chloramphenicol efflux transport protein
D YPA_1422 putative membrane protein K08162 mdtH; MFS transporter, DHA1 family, multidrug resistance protein
D YPA_0471 putative sugar transport protein K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein
D YPA_2759 multidrug resistance protein B K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D YPA_1809 putative transport protein K08169 yebQ; MFS transporter, DHA2 family, multidrug resistance protein
D YPA_2289 putative membrane protein K18326 mdtD; MFS transporter, DHA2 family, multidrug resistance protein
D YPA_2588 putative membrane efflux protein K08223 fsr; MFS transporter, FSR family, fosmidomycin resistance protein
D YPA_1626 putative membrane protein K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein
D YPA_1853 putative membrane protein K26602 yihN; MFS transporter, GlpU family, inner membrane protein
D YPA_0670 putative membrane protein K08219 UMF2; MFS transporter, UMF2 family, putative MFS family transporter protein
D YPA_0671 MFS superfamily transporter K08219 UMF2; MFS transporter, UMF2 family, putative MFS family transporter protein
D YPA_1293 putative signal transducer K05373 ybtX; MFS transporter, putative signal transducer
D YPA_3306 conserved integral membrane protein K06141 tsgA; MFS transporter, TsgA protein
D YPA_1957 putative transporter protein K08368 yaaU; MFS transporter, putative metabolite transport protein
D YPA_2184 phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D YPA_0483 phosphoenolpyruvate-protein phosphotransferase K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
D YPA_2183 PTS system, phosphocarrier protein K02784 ptsH; phosphocarrier protein HPr
D YPA_3716 putative phosphocarrier protein K08485 ptsO; phosphocarrier protein NPr
D YPA_3880 phosphoenolpyruvate--protein phosphotransferase K23991 ptsA; multiphosphoryl transfer protein [EC:2.7.3.9 2.7.1.-]
D YPA_1015 hypothetical protein K11183 fruB; multiphosphoryl transfer protein [EC:2.7.1.202]
D YPA_2185 PTS system, glucose-specific IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D YPA_1917 PTS system, glucose-specific IIBC component K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199]
D YPA_0419 PTS transport protein K02778 ptsGb; glucose PTS system EIIB component [EC:2.7.1.199]
D YPA_2469 pts system, N-acetylglucosamine-specific IIABC component K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D YPA_3710 PTS system, trehalose-specific IIBC component K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201]
D YPA_1017 PTS system, fructose-specific IIBC component K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D YPA_3883 PTS system, IIB component K11202 fryB; fructose-like PTS system EIIB component [EC:2.7.1.-]
D YPA_3882 PTS system, IIB component K11202 fryB; fructose-like PTS system EIIB component [EC:2.7.1.-]
D YPA_3881 PTS system, IIC component K11203 fryC; fructose-like PTS system EIIC or EIIBC or EIIABC component
D YPA_3014 PTS system, mannitol-specific IIABC component K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]
D YPA_2409 PTS system, cellobiose-specific IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D YPA_2407 PTS system, cellobiose-specific IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D YPA_2408 PTS system, cellobiose-specific IIC component K02761 celB; cellobiose PTS system EIIC component
D YPA_1130 PTS system, mannose-specific IIAB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D YPA_1129 PTS system, mannose-specific IIC component K02795 manY; mannose PTS system EIIC component
D YPA_1128 PTS system, mannose-specific IID component K02796 manZ; mannose PTS system EIID component
D YPA_0433 putative PTS permease protein K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-]
D YPA_0436 putative PTS transport protein K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-]
D YPA_0435 putative PTS permease protein K02746 agaW; N-acetylgalactosamine PTS system EIIC component
D YPA_0434 putative PTS permease protein K02747 agaE; N-acetylgalactosamine PTS system EIID component
D YPA_2058 phosphotransferase enzyme II, A component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D YPA_2059 hypothetical protein K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D YPA_2060 putative membrane protein K03475 ulaA; ascorbate PTS system EIIC component
D YPA_3718 nitrogen regulatory IIA protein K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
D YPA_3450 glycerol uptake facilitator protein K02440 glpF; glycerol uptake facilitator
D YPA_2403 putative potassium channel protein K10716 kch; voltage-gated potassium channel
D YPA_2637 ammonium transporter K03320 amt; ammonium transporter, Amt family
D YPA_1713 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D YPA_1031 putative glutathione S-transferase-family protein K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D YPA_3742 putative stringent starvation protein A K03599 sspA; stringent starvation protein A
D YPA_2196 putative membrane protein K07114 yfbK; Ca-activated chloride channel homolog
D YPA_0675 putative formate transporter 1 K06212 focA; formate transporter
D YPA_3310 putative nitrite transporter K02598 nirC; nitrite transporter
D YPA_3235 mechanosensitive ion channel K03282 mscL; large conductance mechanosensitive channel
D YPA_2624 putative potassium efflux system K05802 mscK; potassium-dependent mechanosensitive channel
D YPA_2621 putative potassium efflux system K05802 mscK; potassium-dependent mechanosensitive channel
D YPA_3921 putative membrane transport protein K22051 mscM; miniconductance mechanosensitive channel
D YPA_0345 putative membrane protein K03442 mscS; small conductance mechanosensitive channel
D YPA_1966 putative membrane protein K16053 ybdG; miniconductance mechanosensitive channel
D YPA_2275 putative divalent cation transport protein K06213 mgtE; magnesium transporter
D YPA_2400 putative urea transporter K08717 utp; urea transporter
D YPA_3044 putative flagellar motor transmembrane channel protein K02556 motA; chemotaxis protein MotA
D YPA_1857 chemotaxis MotA protein K02556 motA; chemotaxis protein MotA
D YPA_3043 putative chemotaxis membrane protein K02557 motB; chemotaxis protein MotB
D YPA_1856 chemotaxis MotB protein K02557 motB; chemotaxis protein MotB
D YPA_3110 MotA/TolQ/ExbB proton channel family protein K03561 exbB; biopolymer transport protein ExbB
D YPA_3109 ExbD/TolR-family transport protein K03559 exbD; biopolymer transport protein ExbD
D YPA_0599 TolQ colicin import protein K03562 tolQ; biopolymer transport protein TolQ
D YPA_0600 TolR colicin import membrane protein K03560 tolR; biopolymer transport protein TolR
D YPA_0185 magnesium and cobalt transport protein K03284 corA; magnesium transporter
D YPA_1687 CorA-like Mg2+ transporter protein K16074 zntB; zinc transporter
D YPA_2503 camphor resistance protein CrcB K06199 crcB; fluoride exporter
D YPA_2405 putative membrane protein K06199 crcB; fluoride exporter
D YPA_2404 putative membrane protein K06199 crcB; fluoride exporter
D YPA_0076 putative membrane protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D YPA_2846 putative membrane protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D YPA_0705 putative outer membrane porin C protein K09476 ompF; outer membrane pore protein F
D YPA_0919 outer membrane protein C2 K11929 phoE; outer membrane pore protein E
D YPA_0936 outer membrane protein C, porin K09475 ompC; outer membrane pore protein C
D YPA_0033 maltoporin K02024 lamB; maltoporin
D YPA_0420 maltoporin K02024 lamB; maltoporin
D YPA_0727 putative outer membrane porin A protein K03286 TC.OOP; OmpA-OmpF porin, OOP family
D YPA_2345 attachment invasion locus protein K16078 ail; attachment invasion locus protein
D YPA_2100 putative long-chain fatty acid transport protein K06076 fadL; long-chain fatty acid transport protein
D YPA_1812 putative outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPA_1825 outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPA_0140 putative outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPA_1022 outer membrane usher protein PsaC precursor K07347 fimD; outer membrane usher protein
D YPA_MT0069 F1 capsule anchoring protein K07347 fimD; outer membrane usher protein
D YPA_1298 fimbrial usher protein K07347 fimD; outer membrane usher protein
D YPA_2134 hypothetical protein K07347 fimD; outer membrane usher protein
D YPA_3360 putative autotransporter protein K12678 aidA-I; autotransporter family porin
D YPA_0112 putative vitamin B12 receptor protein K16092 btuB; vitamin B12 transporter
D YPA_0101 hemophore HasA K12545 hasA; heme acquisition protein HasA
D YPA_0100 putative TonB dependent receptor protein K16152 hasR; heme acquisition protein HasR
D YPA_1284 pesticin/yersiniabactin receptor protein K15721 fyuA; pesticin/yersiniabactin receptor
D YPA_0831 putative iron-siderophore receptor K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid
D YPA_2803 hypothetical protein K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins
D YPA_1030 putative outer membrane protein K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins
D YPA_3999 hemin receptor precursor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D YPA_2804 putative exogenous ferric siderophore receptor; Iha adhesin K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D YPA_1125 ferrichrome receptor protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D YPA_0308 putative hydroxamate-type ferrisiderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D YPA_3305 putative membrane receptor protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D YPA_3368 putative TonB-dependent outer membrane receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D YPA_0270 putative ferric siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D YPA_3129 ABC-transporter outer membrane component K12340 tolC; outer membrane protein
D YPA_2983 outer membrane efflux lipoprotein K18139 oprM; outer membrane protein, multidrug efflux system
D YPA_0528 putative surface antigen K07277 SAM50; outer membrane protein insertion porin family
D YPA_2316 putative lipoprotein K17713 bamB; outer membrane protein assembly factor BamB
D YPA_2252 lipoprotein K07287 bamC; outer membrane protein assembly factor BamC
D YPA_2769 putative lipoprotein K05807 bamD; outer membrane protein assembly factor BamD
D YPA_0582 hypothetical protein K06186 bamE; outer membrane protein assembly factor BamE
D YPA_0074 hypothetical protein K07278 tamA; translocation and assembly module TamA
D YPA_0073 hypothetical protein K09800 tamB; translocation and assembly module TamB
D YPA_3823 hypothetical protein K22110 kdgM; oligogalacturonate-specific porin family protein
D YPA_1803 hypothetical protein K22110 kdgM; oligogalacturonate-specific porin family protein
D YPA_3723 hypothetical protein K09774 lptA; lipopolysaccharide export system protein LptA
D YPA_3724 hypothetical protein K11719 lptC; lipopolysaccharide export system protein LptC
D YPA_4089 organic solvent tolerance protein precursor K04744 lptD; LPS-assembly protein
D YPA_2488 rare lipoprotein B precursor K03643 lptE; LPS-assembly lipoprotein
D YPA_CD0032 Yop targeting protein K23475 yopB; transloator
D YPA_CD0033 Yop negative regulation/targeting component K23476 yopD; transloator
D YPA_3944 hypothetical protein K19298 subB; subtilase cytotoxin, subunit B
D YPA_2480 putative membrane protein K06189 corC; hemolysin (HlyC) family protein
D YPA_0809 putative membrane protein K06518 cidA; holin-like protein
D YPA_0941 putative transport protein K16210 togT; oligogalacturonide transporter
D YPA_1026 putative lysine-specific permease K11733 lysP; lysine-specific permease
D YPA_2923 aromatic amino acid transport protein K11734 aroP; aromatic amino acid transport protein AroP
D YPA_1117 aromatic amino acid transport protein K11734 aroP; aromatic amino acid transport protein AroP
D YPA_2694 proline-specific permease K11736 proY; proline-specific permease ProY
D YPA_1238 D-serine/D-alanine/glycine transporter K11737 cycA; D-serine/D-alanine/glycine transporter
D YPA_1319 L-asparagine permease K11738 ansP; L-asparagine permease
D YPA_4103 amino acid permease K16234 hutT; histidine transporter
D YPA_1654 putative amino acid antiporter K03758 arcD; arginine:ornithine antiporter / lysine permease
D YPA_0912 putative amino acid permease K03759 adiC; arginine:agmatine antiporter
D YPA_3135 putative permease K16263 yjeH; amino acid efflux transporter
D YPA_0607 putative cation transport protein K16264 czcD; cobalt-zinc-cadmium efflux system protein
D YPA_3464 putative integral membrane protein K13283 fieF; ferrous-iron efflux pump FieF
D YPA_2628 multidrug efflux protein K18138 acrB; multidrug efflux pump
D YPA_2984 multidrug efflux protein K18138 acrB; multidrug efflux pump
D YPA_3357 putative integral membrane efflux protein K18138 acrB; multidrug efflux pump
D YPA_2234 multidrug efflux protein K18324 acrD; multidrug efflux pump
D YPA_2287 AcrB/AcrD/AcrF family membrane protein K07788 mdtB; multidrug efflux pump
D YPA_2288 AcrB/AcrD/AcrF family membrane protein K07789 mdtC; multidrug efflux pump
D YPA_1682 quaternary ammonium compound-resistance protein K03297 emrE; small multidrug resistance pump
D YPA_3927 putative chaperone K11741 sugE; quaternary ammonium compound-resistance protein SugE
D YPA_1452 putative integral membrane protein K11742 mdtI; spermidine export protein MdtI
D YPA_1451 putative integral membrane protein K11743 mdtJ; spermidine export protein MdtJ
D YPA_2417 putative membrane protein K08978 TC.BAT1; bacterial/archaeal transporter family protein
D YPA_1999 putative membrane protein K11939 rhtA; inner membrane transporter RhtA
D YPA_3947 L-rhamnose-proton symport protein K02856 rhaT; L-rhamnose-H+ transport protein
D YPA_0186 putative membrane protein K05786 rarD; chloramphenicol-sensitive protein RarD
D YPA_1761 putative membrane protein K12962 arnE; undecaprenyl phosphate-alpha-L-ara4N flippase subunit ArnE
D YPA_3383 putative gluconate transporter K16321 gntP; high-affinity gluconate transporter
D YPA_3783 putative gluconate permease K06155 gntT; Gnt-I system high-affinity gluconate transporter
D YPA_3807 GntP family permease K03299 TC.GNTP; gluconate:H+ symporter, GntP family
D YPA_3935 anaerobic C4-dicarboxylate transporter K07791 dcuA; anaerobic C4-dicarboxylate transporter DcuA
D YPA_2855 putative Dcu family, anaerobic C4-dicarboxylate transporter K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D YPA_2856 putative Dcu family, anaerobic C4-dicarboxylate transporter K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D YPA_2857 hypothetical protein K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D YPA_1076 high-affinity choline transport protein K02168 betT; choline/glycine/proline betaine transport protein
D YPA_1341 calcium/proton antiporter K07300 chaA; Ca2+:H+ antiporter
D YPA_3727 putative sodium/calcium exchanger protein K07301 yrbG; cation:H+ antiporter
D YPA_3795 phosphate transport protein K16322 pit; low-affinity inorganic phosphate transporter
D YPA_3669 sodium/pantothenate symporter K14392 panF; sodium/pantothenate symporter
D YPA_1231 proline permease K11928 putP; sodium/proline symporter
D YPA_4033 putative transmembrane transport protein K14393 actP; cation/acetate symporter
D YPA_4030 proton glutamate symport protein K11102 gltP; proton glutamate symport protein
D YPA_3820 C4-dicarboxylate transport protein K11103 dctA; aerobic C4-dicarboxylate transport protein
D YPA_3204 putative symporter protein K07862 sstT; serine/threonine transporter
D YPA_3507 sodium/glutamate symport carrier protein K03312 gltS; glutamate:Na+ symporter, ESS family
D YPA_4064 sodium-proton antiporter K03313 nhaA; Na+:H+ antiporter, NhaA family
D YPA_1502 Na+/H+ antiporter K03314 nhaB; Na+:H+ antiporter, NhaB family
D YPA_3643 putative putative Na(+)/H(+) exchanger protein K24163 nhaK; monovalent cation/hydrogen antiporter
D YPA_3281 potassium-efflux system protein K11747 kefB; glutathione-regulated potassium-efflux system protein KefB
D YPA_3282 hypothetical protein K11748 kefG; glutathione-regulated potassium-efflux system ancillary protein KefG
D YPA_2589 putative potassium antiporter K26735 KEA4_5_6; K+:H+ antiporter
D YPA_3431 Trk system potassium uptake protein TrkH K03498 trkH; trk/ktr system potassium uptake protein
D YPA_3234 trk system potassium uptake protein K03499 trkA; trk/ktr system potassium uptake protein
D YPA_3508 putative membrane permease K16345 xanP; xanthine permease XanP
D YPA_3642 putative xanthine/uracil permease K06901 pbuG; adenine/guanine/hypoxanthine permease
D YPA_4152 Xanthine/uracil permeases family protein K06901 pbuG; adenine/guanine/hypoxanthine permease
D YPA_2172 nucleoside permease K11535 nupC; nucleoside transport protein
D YPA_0923 tyrosine-specific transport protein K03834 tyrP; tyrosine-specific transport protein
D YPA_1001 putative tryptophan-specific transport protein K03835 mtr; tryptophan-specific transport protein
D YPA_0612 serine transporter K03837 sdaC; serine transporter
D YPA_4005 putative transmembrane transport protein K26603 yhjV; inner membrane transport protein
D YPA_2888 putative chloride channel protein K03281 clcA; chloride channel protein, CIC family
D YPA_2401 putative nickel transport protein K07241 hoxN; nickel/cobalt transporter (NiCoT) family protein
D YPA_1409 hypothetical protein K03321 TC.SULP; sulfate permease, SulP family
D YPA_2171 manganese transport protein MntH K03322 mntH; manganese transport protein
D YPA_2797 arsenical pump membrane protein K03893 arsB; arsenical pump membrane protein
D YPA_0160 putative lipopolysaccharide biosynthesis protein K16693 wzxE; enterobacterial common antigen flippase
D YPA_1425 putative membrane protein K03980 murJ; putative peptidoglycan lipid II flippase
D YPA_0233 putative membrane protein K13936 mdcF; malonate transporter and related proteins
D YPA_2314 putative membrane protein K13936 mdcF; malonate transporter and related proteins
D YPA_0009 potassium transport protein K03549 kup; KUP system potassium uptake protein
D YPA_0346 putative LysE type translocator K06895 lysE; L-lysine exporter family protein LysE/ArgO
D YPA_0349 putative LysE/YggA type lysine exporter K06895 lysE; L-lysine exporter family protein LysE/ArgO
D YPA_0191 putative homoserine/homoserine lactone efflux protein K05834 rhtB; homoserine/homoserine lactone efflux protein
D YPA_0190 threonine efflux protein K05835 rhtC; threonine efflux protein
D YPA_4076 putative LysE type translocator K05835 rhtC; threonine efflux protein
D YPA_2755 putative amino acid transporter K26605 azlC; branched chain amino acid efflux pump
D YPA_2756 putative membrane protein K26606 azlD; branched chain amino acid efflux pump
D YPA_3699 putative membrane protein K03468 aaeB; p-hydroxybenzoic acid efflux pump subunit AaeB
D YPA_3172 putative membrane protein K15547 mdtO; multidrug resistance protein MdtO
D YPA_2259 putative membrane protein K03548 perM; putative permease
D YPA_0200 putative membrane protein K09125 yhhQ; queuosine precursor transporter
D YPA_1781 multiple antibiotic resistance protein K05595 marC; multiple antibiotic resistance protein
D YPA_3547 cell division protein FtsW K03588 ftsW; cell division protein FtsW
D YPA_1126 putative membrane protein K23242 mntP; manganese efflux pump family protein
D YPA_1232 putative membrane protein K07243 FTR; high-affinity iron transporter
D YPA_1324 putative membrane protein K07243 FTR; high-affinity iron transporter
D YPA_1233 hypothetical protein K07224 efeO; iron uptake system component EfeO
D YPA_1234 hypothetical protein K16301 efeB; deferrochelatase/peroxidase EfeB [EC:1.11.1.-]
D YPA_1325 hypothetical protein K07230 p19; periplasmic iron binding protein
D YPA_2341 putative membrane protein K08970 rcnA; nickel/cobalt transporter (NicO) family protein
D YPA_1552 TonB protein K03832 tonB; periplasmic protein TonB
D YPA_0104 putative membrane protein K03832 tonB; periplasmic protein TonB
D YPA_0603 peptidoglycan-associated lipoprotein Pal K03640 pal; peptidoglycan-associated lipoprotein
D YPA_0601 TolA colicin import membrane protein K03646 tolA; colicin import membrane protein
D YPA_0602 TolB colicin import protein K03641 tolB; TolB protein
D YPA_2819 anaerobic dimethyl sulfoxide reductase chain A K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3]
D YPA_2154 putative dimethyl sulfoxide reductase chain A protein K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3]
D YPA_2820 anaerobic dimethyl sulfoxide reductase chain B K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B
D YPA_2155 putative dimethyl sulfoxide reductase chain B protein K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B
D YPA_2821 anaerobic dimethyl sulfoxide reductase chain C K07308 dmsC; anaerobic dimethyl sulfoxide reductase subunit C
D YPA_2156 putative dimethyl sulfoxide reductase chain C protein K07308 dmsC; anaerobic dimethyl sulfoxide reductase subunit C
D YPA_0475 putative biotin sulfoxide reductas2 K08351 bisC; biotin/methionine sulfoxide reductase [EC:1.-.-.-]
D YPA_2758 multidrug resistance protein A K03543 emrA; membrane fusion protein, multidrug efflux system
D YPA_3171 putative HlyD family secretion protein K15549 mdtN; membrane fusion protein, multidrug efflux system
D YPA_0103 HlyD family secretion protein K12537 hasE; membrane fusion protein, type I secretion system
D YPA_1610 hypothetical protein K12532 rtxD; membrane fusion protein, RTX toxin transport system
D YPA_3446 hypothetical protein K13408 cvaA; membrane fusion protein
D YPA_2985 multidrug efflux protein K03585 acrA; membrane fusion protein, multidrug efflux system
D YPA_2627 multidrug efflux protein K03585 acrA; membrane fusion protein, multidrug efflux system
D YPA_1051 putative membrane protein K25859 acrZ; accessory protein, multidrug efflux pump
D YPA_2286 putitive HlyD family secretion protein K07799 mdtA; membrane fusion protein, multidrug efflux system
D YPA_0654 putative HlyD family secretion protein K13888 macA; membrane fusion protein, macrolide-specific efflux system
D YPA_2189 putative HlyD family secretion protein K13888 macA; membrane fusion protein, macrolide-specific efflux system
D YPA_3698 putative HlyD family secretion protein K15548 aaeA; p-hydroxybenzoic acid efflux pump subunit AaeA
D YPA_0606 intergral membrane NMN transport protein PnuC K03811 pnuC; nicotinamide mononucleotide transporter
D YPA_3336 hypothetical ferrous iron transport protein A K04758 feoA; ferrous iron transport protein A
D YPA_3337 ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B
D YPA_3338 hypothetical protein K07490 feoC; ferrous iron transport protein C
D YPA_3797 universal stress protein B K06144 uspB; universal stress protein B
D YPA_2105 putative cytochrome c-type biogenesis protein K02198 ccmF; cytochrome c-type biogenesis protein CcmF
D YPA_1861 Mg(2+) transport ATPase protein C K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein
D YPA_1681 putative membrane protein K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein
D YPA_1160 putative copper resistance protein D K07245 pcoD; copper resistance protein D
D YPA_1159 putative copper resistance protein K07156 copC; copper resistance protein C
D YPA_1512 hypothetical protein K07274 mipA; MipA family protein
C 02044 Secretion system [BR:ypa02044]
D YPA_3129 ABC-transporter outer membrane component K12340 tolC; outer membrane protein
D YPA_1608 hypothetical protein K12530 rtxB; ATP-binding cassette, subfamily B, bacterial RtxB
D YPA_1612 putative toxin transport protein K12531 rtxE; ATP-binding cassette, subfamily B, bacterial RtxE
D YPA_1610 hypothetical protein K12532 rtxD; membrane fusion protein, RTX toxin transport system
D YPA_0102 ABC transporter protein K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D YPA_0103 HlyD family secretion protein K12537 hasE; membrane fusion protein, type I secretion system
D YPA_3446 hypothetical protein K13408 cvaA; membrane fusion protein
D YPA_3447 colicin V processing peptidase. Cysteine peptidase. MEROPS family C39 K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB
D YPA_0452 general secretion pathway protein C K02452 gspC; general secretion pathway protein C
D YPA_0453 general secretion pathway protein D K02453 gspD; general secretion pathway protein D
D YPA_0454 general secretion pathway protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D YPA_0455 putative general protein secretion protein K02455 gspF; general secretion pathway protein F
D YPA_0456 general secretion pathway protein G K02456 gspG; general secretion pathway protein G
D YPA_0457 hypothetical protein K02457 gspH; general secretion pathway protein H
D YPA_0458 general secretion pathway protein I K02458 gspI; general secretion pathway protein I
D YPA_0459 general secretion pathway protein J K02459 gspJ; general secretion pathway protein J
D YPA_0460 general secretion pathway protein K K02460 gspK; general secretion pathway protein K
D YPA_0461 general secretion pathway protein L K02461 gspL; general secretion pathway protein L
D YPA_0463 type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A K02464 gspO; general secretion pathway protein O [EC:3.4.23.43 2.1.1.-]
D YPA_0464 putative lipoprotein K02465 gspS; general secretion pathway protein S
D YPA_2321 putative fimbrial biogenesis protein K02656 pilF; type IV pilus assembly protein PilF
D YPA_0325 hypothetical protein K02669 pilT; twitching motility protein PilT
D YPA_3097 putative membrane protein K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D YPA_3098 putative membrane protein K02279 cpaB; pilus assembly protein CpaB
D YPA_3099 hypothetical protein K02280 cpaC; pilus assembly protein CpaC
D YPA_3101 hypothetical protein K02282 cpaE; pilus assembly protein CpaE
D YPA_3102 putative type II secretion protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D YPA_3103 putative membrane protein K12510 tadB; tight adherence protein B
D YPA_3104 hypothetical protein K12511 tadC; tight adherence protein C
D YPA_3105 hypothetical protein K12512 tadD; tight adherence protein D
D YPA_3106 putative membrane protein K12513 tadE; tight adherence protein E
D YPA_3107 hypothetical protein K12514 tadF; tight adherence protein F
D YPA_3108 putative membrane protein K12515 tadG; tight adherence protein G
D YPA_0486 hypothetical protein K02679 ppdA; prepilin peptidase dependent protein A
D YPA_0487 putative prepilin peptidase dependent protein K02680 ppdB; prepilin peptidase dependent protein B
D YPA_0489 putative prepilin peptidase dependent protein K02681 ppdC; prepilin peptidase dependent protein C
D YPA_2927 putative prepilin peptidase dependent protein D precursor K02682 ppdD; prepilin peptidase dependent protein D
D YPA_2928 putative type II secretion system protein K02504 hofB; protein transport protein HofB
D YPA_2929 putative type II secretion system protein K02505 hofC; protein transport protein HofC
D YPA_3324 hypothetical protein K12288 hofM; pilus assembly protein HofM
D YPA_3323 putative membrane protein K12289 hofN; pilus assembly protein HofN
D YPA_3322 putative membrane protein K12290 hofO; pilus assembly protein HofO
D YPA_3321 putative membrane protein K12291 hofP; pilus assembly protein HofP
D YPA_3319 putative membrane transport protein K02507 hofQ; protein transport protein HofQ
D YPA_0322 putative membrane protein K02221 yggT; YggT family protein
D YPA_2647 hypothetical protein K02237 comEA; competence protein ComEA
D YPA_0685 putative membrane protein K02238 comEC; competence protein ComEC
D YPA_CD0012 type III secretion protein K03219 yscC; type III secretion protein C
D YPA_4027 type III secretion protein K03219 yscC; type III secretion protein C
D YPA_CD0011 type III secretion protein K03220 yscD; type III secretion protein D
D YPA_4026 putative type-III secretion protein K03220 yscD; type III secretion protein D
D YPA_CD0010 type III secretion protein K03221 yscF; type III secretion protein F
D YPA_4023 putative type III secretion apparatus K03221 yscF; type III secretion protein F
D YPA_CD0007 type III secretion protein K04053 yscI; type III secretion protein I
D YPA_CD0006 type III secretion lipoprotein K03222 yscJ; type III secretion protein J
D YPA_4020 type III secretion system apparatus lipoprotein K03222 yscJ; type III secretion protein J
D YPA_CD0005 type III secretion protein K04054 yscK; type III secretion protein K
D YPA_CD0004 type III secretion protein K03223 yscL; type III secretion protein L
D YPA_CD0022 type III secretion system ATPase, FliI/YscN K03224 yscN; ATP synthase in type III secretion protein N [EC:7.4.2.8]
D YPA_4016 putative type III secretion system ATP synthase K03224 yscN; ATP synthase in type III secretion protein N [EC:7.4.2.8]
D YPA_CD0021 type III secretion protein K04056 yscO; type III secretion protein O
D YPA_CD0020 type III secretion protein K04057 yscP; type III secretion protein P
D YPA_CD0019 type III secretion protein K03225 yscQ; type III secretion protein Q
D YPA_4013 type III secretion system apparatus protein K03225 yscQ; type III secretion protein Q
D YPA_4012 putative type III secretion apparatus protein K03226 yscR; type III secretion protein R
D YPA_CD0018 Yop secretion membrane protein K03226 yscR; type III secretion protein R
D YPA_CD0017 type III secretion protein K03227 yscS; type III secretion protein S
D YPA_4011 putative type III secretion apparatus protein K03227 yscS; type III secretion protein S
D YPA_CD0016 type III secretion protein K03228 yscT; type III secretion protein T
D YPA_4010 putative type III secretion apparatus protein K03228 yscT; type III secretion protein T
D YPA_CD0015 type III secretion protein K03229 yscU; type III secretion protein U
D YPA_4009 putative type III secretion apparatus protein K03229 yscU; type III secretion protein U
D YPA_4017 secretion system apparatus protein K03230 yscV; type III secretion protein V
D YPA_CD0028 membrane-bound Yop protein K03230 yscV; type III secretion protein V
D YPA_CD0023 type III secretion outer membrane protein PopN K04058 yscW; type III secretion protein W
D YPA_CD0026 type III secretion protein K04059 yscX; type III secretion protein X
D YPA_CD0013 hypothetical protein K04049 yscB; type III secretion protein B
D YPA_CD0081 type III secretion protein K04050 yscE; type III secretion protein E
D YPA_CD0009 type III secretion protein K04051 yscG; type III secretion protein G
D YPA_CD0008 type III secretion protein K04052 yscH; type III secretion protein H
D YPA_CD0003 type III secretion regulatory protein K04055 yscM; type III secretion protein M
D YPA_CD0027 type III secretion protein K04060 yscY; type III secretion protein Y
D YPA_3088 hypothetical protein K02400 flhA; flagellar biosynthesis protein FlhA
D YPA_1165 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D YPA_3087 putative flagellar assembly protein K02401 flhB; flagellar biosynthesis protein FlhB
D YPA_1164 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D YPA_3078 putative flagellar M-ring protein K02409 fliF; flagellar M-ring protein FliF
D YPA_1206 flagellar M-ring protein K02409 fliF; flagellar M-ring protein FliF
D YPA_3073 putative flagellar assembly protein K02411 fliH; flagellar assembly protein FliH
D YPA_1204 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D YPA_3072 putative flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D YPA_1203 flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D YPA_3083 flagellar switch protein K02417 fliN; flagellar motor switch protein FliN
D YPA_1198 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D YPA_1197 flagellar protein FliO K02418 fliO; flagellar protein FliO/FliZ
D YPA_3084 putative flagellar assembly protein K02419 fliP; flagellar biosynthesis protein FliP
D YPA_1196 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D YPA_3085 putative flagellar assembly protein K02420 fliQ; flagellar biosynthesis protein FliQ
D YPA_1195 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D YPA_3086 putative flagellar assembly protein K02421 fliR; flagellar biosynthesis protein FliR
D YPA_1194 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D YPA_0378 thiol:disulfide interchange protein DsbC K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D YPA_3360 putative autotransporter protein K12678 aidA-I; autotransporter family porin
D YPA_CD0062 conserved hypothetical protein K12341 yadA; adhesin YadA
D YPA_0678 hypothetical protein K12342 yadB_C; adhesin YadB/C
D YPA_0679 hypothetical protein K12342 yadB_C; adhesin YadB/C
D YPA_1426 putative hemolysin activator protein K11017 shlB; hemolysin activation/secretion protein
D YPA_0023 hemolysin activator protein K11017 shlB; hemolysin activation/secretion protein
D YPA_0022 hemolysin K11016 shlA; hemolysin
D YPA_1427 putative hemolysin K11016 shlA; hemolysin
D YPA_2121 putative membrane protein K11891 impL; type VI secretion system protein ImpL
D YPA_3406 hypothetical protein K11891 impL; type VI secretion system protein ImpL
D YPA_0776 putative membrane protein K11891 impL; type VI secretion system protein ImpL
D YPA_3580 putative membrane protein K11891 impL; type VI secretion system protein ImpL
D YPA_3401 putative membrane protein K11892 impK; type VI secretion system protein ImpK
D YPA_2122 putative OmpA family protein K11892 impK; type VI secretion system protein ImpK
D YPA_0287 putative membrane protein K11892 impK; type VI secretion system protein ImpK
D YPA_0762 putative membrane protein K11892 impK; type VI secretion system protein ImpK
D YPA_3581 putative OmpA-family membrane protein K11892 impK; type VI secretion system protein ImpK
D YPA_2125 hypothetical protein K11892 impK; type VI secretion system protein ImpK
D YPA_0286 hypothetical protein K11893 impJ; type VI secretion system protein ImpJ
D YPA_0761 hypothetical protein K11893 impJ; type VI secretion system protein ImpJ
D YPA_2126 hypothetical protein K11893 impJ; type VI secretion system protein ImpJ
D YPA_3400 hypothetical protein K11893 impJ; type VI secretion system protein ImpJ
D YPA_3582 hypothetical protein K11893 impJ; type VI secretion system protein ImpJ
D YPA_2139 hypothetical protein K11895 impH; type VI secretion system protein ImpH
D YPA_3397 hypothetical protein K11895 impH; type VI secretion system protein ImpH
D YPA_0782 hypothetical protein K11895 impH; type VI secretion system protein ImpH
D YPA_3591 hypothetical protein K11895 impH; type VI secretion system protein ImpH
D YPA_0040 hypothetical protein K11896 impG; type VI secretion system protein ImpG
D YPA_2138 hypothetical protein K11896 impG; type VI secretion system protein ImpG
D YPA_0781 hypothetical protein K11896 impG; type VI secretion system protein ImpG
D YPA_3592 hypothetical protein K11896 impG; type VI secretion system protein ImpG
D YPA_2116 hypothetical protein K11897 impF; type VI secretion system protein ImpF
D YPA_3593 hypothetical protein K11897 impF; type VI secretion system protein ImpF
D YPA_2129 hypothetical protein K11900 impC; type VI secretion system protein ImpC
D YPA_0760 hypothetical protein K11900 impC; type VI secretion system protein ImpC
D YPA_0038 hypothetical protein K11900 impC; type VI secretion system protein ImpC
D YPA_0285 hypothetical protein K11900 impC; type VI secretion system protein ImpC
D YPA_3595 conserved hypothetical protein K11900 impC; type VI secretion system protein ImpC
D YPA_2130 hypothetical protein K11901 impB; type VI secretion system protein ImpB
D YPA_0037 hypothetical protein K11901 impB; type VI secretion system protein ImpB
D YPA_0284 hypothetical protein K11901 impB; type VI secretion system protein ImpB
D YPA_0759 hypothetical protein K11901 impB; type VI secretion system protein ImpB
D YPA_4095 hypothetical protein K11901 impB; type VI secretion system protein ImpB
D YPA_2140 hypothetical protein K11902 impA; type VI secretion system protein ImpA
D YPA_4094 hypothetical protein K11902 impA; type VI secretion system protein ImpA
D YPA_0036 hypothetical protein K11903 hcp; type VI secretion system secreted protein Hcp
D YPA_2128 hypothetical protein K11903 hcp; type VI secretion system secreted protein Hcp
D YPA_0289 hypothetical protein K11903 hcp; type VI secretion system secreted protein Hcp
D YPA_3594 hypothetical protein K11903 hcp; type VI secretion system secreted protein Hcp
D YPA_0764 hypothetical protein K11903 hcp; type VI secretion system secreted protein Hcp
D YPA_3386 hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG
D YPA_0766 hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG
D YPA_0291 hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG
D YPA_2120 hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG
D YPA_3418 putative Rhs accessory genetic element K11904 vgrG; type VI secretion system secreted protein VgrG
D YPA_3409 putative Rhs accessory genetic element K11904 vgrG; type VI secretion system secreted protein VgrG
D YPA_3589 hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG
D YPA_0039 hypothetical protein K11905 K11905; type VI secretion system protein
D YPA_0784 hypothetical protein K11905 K11905; type VI secretion system protein
D YPA_3399 putative lipoprotein K11906 vasD; type VI secretion system protein VasD
D YPA_0783 hypothetical protein K11906 vasD; type VI secretion system protein VasD
D YPA_2127 hypothetical protein K11906 vasD; type VI secretion system protein VasD
D YPA_3583 putative lipoprotein K11906 vasD; type VI secretion system protein VasD
D YPA_0765 putative ATPase subunit of ATP-dependent protease K11907 vasG; type VI secretion system protein VasG
D YPA_2137 Clp ATPase K11907 vasG; type VI secretion system protein VasG
D YPA_3402 Clp ATPase K11907 vasG; type VI secretion system protein VasG
D YPA_3590 putative Clp ATPase K11907 vasG; type VI secretion system protein VasG
D YPA_0290 Clp ATPase K11907 vasG; type VI secretion system protein VasG
D YPA_0777 hypothetical protein K11910 vasJ; type VI secretion system protein VasJ
D YPA_3405 hypothetical protein K11910 vasJ; type VI secretion system protein VasJ
D YPA_0785 hypothetical protein K11911 vasL; type VI secretion system protein VasL
D YPA_3407 hypothetical protein K11911 vasL; type VI secretion system protein VasL
D YPA_3408 hypothetical protein K11911 vasL; type VI secretion system protein VasL
D YPA_3398 hypothetical protein K11894 impI; type VI secretion system protein ImpI
D YPA_2117 hypothetical protein K11898 impE; type VI secretion system protein ImpE
D YPA_3404 hypothetical protein K11909 vasI; type VI secretion system protein VasI
D YPA_1811 putative fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D YPA_1814 putative fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D YPA_1300 fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D YPA_0142 putative fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D YPA_2136 frimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D YPA_1810 putative chaperone protein K07346 fimC; fimbrial chaperone protein
D YPA_1824 putative chaperone protein K07346 fimC; fimbrial chaperone protein
D YPA_0141 putative fimbrial chaperone K07346 fimC; fimbrial chaperone protein
D YPA_1812 putative outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPA_1825 outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPA_0140 putative outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPA_1022 outer membrane usher protein PsaC precursor K07347 fimD; outer membrane usher protein
D YPA_MT0069 F1 capsule anchoring protein K07347 fimD; outer membrane usher protein
D YPA_1298 fimbrial usher protein K07347 fimD; outer membrane usher protein
D YPA_2134 hypothetical protein K07347 fimD; outer membrane usher protein
D YPA_1822 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D YPA_1826 putative membrane protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D YPA_1823 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D YPA_1821 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D YPA_3095 outer membrane usher protein K12518 papC; outer membrane usher protein PapC
D YPA_4134 hypothetical protein K12518 papC; outer membrane usher protein PapC
D YPA_3094 fimbrial chaperone protein K12519 papD; chaperone protein PapD
D YPA_3537 protein translocase subunit secA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D YPA_3475 protein translocase subunit secB K03071 secB; preprotein translocase subunit SecB
D YPA_2684 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D YPA_3625 protein translocase subunit secE/sec61 gamma K03073 secE; preprotein translocase subunit SecE
D YPA_2683 protein translocase subunit secF K03074 secF; preprotein translocase subunit SecF
D YPA_0049 protein translocase subunit secG K03075 secG; preprotein translocase subunit SecG
D YPA_3538 hypothetical protein K13301 secM; secretion monitor
D YPA_3243 protein translocase subunit secY/sec61 alpha K03076 secY; preprotein translocase subunit SecY
D YPA_2848 signal recognition particle subunit FFH/SRP54 (srp54) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D YPA_0208 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D YPA_2685 protein translocase subunit yajC K03210 yajC; preprotein translocase subunit YajC
D YPA_4147 protein translocase subunit yidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D YPA_0246 Sec-independent protein translocase protein TatA K03116 tatA; sec-independent protein translocase protein TatA
D YPA_0247 Sec-independent protein translocase TatB K03117 tatB; sec-independent protein translocase protein TatB
D YPA_0248 Sec-independent protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC
D YPA_2502 sec-independent protein translocase protein K03425 tatE; sec-independent protein translocase protein TatE
C 02042 Bacterial toxins [BR:ypa02042]
D YPA_3944 hypothetical protein K19298 subB; subtilase cytotoxin, subunit B
D YPA_3686 putative insecticidal toxin K11021 tccC; insecticidal toxin complex protein TccC
D YPA_3687 putative insecticidal toxin K11021 tccC; insecticidal toxin complex protein TccC
D YPA_1660 putative insecticidal toxin complex K11021 tccC; insecticidal toxin complex protein TccC
D YPA_1726 insecticial toxin K11021 tccC; insecticidal toxin complex protein TccC
D YPA_0076 putative membrane protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D YPA_2846 putative membrane protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D YPA_0022 hemolysin K11016 shlA; hemolysin
D YPA_1427 putative hemolysin K11016 shlA; hemolysin
D YPA_1426 putative hemolysin activator protein K11017 shlB; hemolysin activation/secretion protein
D YPA_0023 hemolysin activator protein K11017 shlB; hemolysin activation/secretion protein
D YPA_0368 putative hemolysin III K11068 hlyIII; hemolysin III
D YPA_MT0075 murine toxin K11009 ymt; murine toxin
C 02022 Two-component system [BR:ypa02022]
D YPA_2697 PAS/PAC sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D YPA_2698 phosphate regulon transcriptional regulatory protein K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D YPA_2198 putative two-component response regulator K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D YPA_1891 sensor protein kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D YPA_1890 response regulator protein K07660 phoP; two-component system, OmpR family, response regulator PhoP
D YPA_3332 osmolarity sensor protein K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D YPA_3333 transcriptional regulatory protein K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D YPA_1657 two-component regulatory system, sensor kinase protein K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3]
D YPA_1656 two-component regulatory system, response regulator protein K07661 rstA; two-component system, OmpR family, response regulator RstA
D YPA_3470 two component sensor kinase K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D YPA_3469 two component system response regulatory protein K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D YPA_0374 putative histidine kinase sensor K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3]
D YPA_0373 putative response regulator K07663 creB; two-component system, OmpR family, catabolic regulation response regulator CreB
D YPA_2290 hypothetical protein K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3]
D YPA_2292 two-component system response regulator K07664 baeR; two-component system, OmpR family, response regulator BaeR
D YPA_0058 two-component system sensor protein K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3]
D YPA_0057 two-component system response regulator K07771 basR; two-component system, OmpR family, response regulator BasR
D YPA_1382 putative two-component system sensor protein K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D YPA_1383 transcriptional activator K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
D YPA_2419 two-component regulatory protein sensor kinase KdpD K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D YPA_2418 two-component regulatory protein response regulator KdpE K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D YPA_3748 PAS/PAC sensor hybrid histidine kinase K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D YPA_4049 aerobic respiration control protein K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA
D YPA_2187 putative two-component system sensor kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D YPA_2188 putative two-component system response regulator K02483 K02483; two-component system, OmpR family, response regulator
D YPA_1342 nitrate/nitrite sensor protein K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3]
D YPA_2232 nitrate/nitrite response regulator protein NarP K07685 narP; two-component system, NarL family, nitrate/nitrite response regulator NarP
D YPA_3835 ATP-binding region, ATPase-like K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D YPA_4099 hypothetical protein K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D YPA_4100 two-component system response regulator K07686 uhpA; two-component system, NarL family, uhpT operon response regulator UhpA
D YPA_0872 putative GerR-family transcriptional regulatory protein K20264 fusR; two-component system, NarL family, response regulator FusR
D YPA_0931 two component sensor kinase/response regulator protein RcsC K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]
D YPA_0933 putative two-component sensor protein like yojN K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3]
D YPA_0934 hypothetical protein K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3]
D YPA_0932 two component response regulator component B K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB
D YPA_2880 Hpt sensor hybrid histidine kinase K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D YPA_1243 response regulator protein K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D YPA_1302 signal transduction histidine kinase K07679 evgS; two-component system, NarL family, sensor histidine kinase EvgS [EC:2.7.13.3]
D YPA_1303 putative two-component response regulator K07688 fimZ; two-component system, NarL family, response regulator, fimbrial Z protein, FimZ
D YPA_3772 putative membrane protein K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D YPA_2858 two-component system response regulator K02477 K02477; two-component system, LytTR family, response regulator
D YPA_3519 PAS/PAC sensor signal transduction histidine kinase K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D YPA_3520 nitrogen regulation protein K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D YPA_1084 PAS/PAC sensor signal transduction histidine kinase K07709 zraS; two-component system, NtrC family, sensor histidine kinase HydH [EC:2.7.13.3]
D YPA_1085 Helix-turn-helix, Fis-type K07713 zraR; two-component system, NtrC family, response regulator HydG
D YPA_2355 two-component system sensor kinase K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D YPA_2353 two-component system response regulator K07715 glrR; two-component system, NtrC family, response regulator GlrR
D YPA_1855 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D YPA_1842 chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D YPA_1843 protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D YPA_4028 two-component sensor/regulator K14978 ssrA; two-component system, LuxR family, secretion system sensor histidine kinase SsrA
D YPA_4029 putative two-component response regulator K14979 ssrB; two-component system, LuxR family, secretion system response regulator SsrB
D YPA_3080 sigma-54 transcriptional regulatory protein K10943 flrC; two-component system, response regulator FlrC
D YPA_1531 response regulator K02485 rssB; two-component system, response regulator
C 02035 Bacterial motility proteins [BR:ypa02035]
D YPA_1855 chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D YPA_1854 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D YPA_1844 chemotaxis protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D YPA_1843 protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D YPA_1842 chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D YPA_1841 chemotaxis protein CheZ K03414 cheZ; chemotaxis protein CheZ
D YPA_2007 putative chemotactic transducer K03406 mcp; methyl-accepting chemotaxis protein
D YPA_0943 putative methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D YPA_1846 methyl-accepting chemotaxis protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D YPA_0467 putative methyl-accepting chemotaxis protein K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D YPA_3023 methyl-accepting chemotaxis protein II K05875 tar; methyl-accepting chemotaxis protein II, aspartate sensor receptor
D YPA_1862 hypothetical protein K05876 trg; methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor
D YPA_1863 methyl-accepting chemotaxis protein III (MCP-III) K05876 trg; methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor
D YPA_1845 hypothetical protein K05877 tap; methyl-accepting chemotaxis protein IV, peptide sensor receptor
D YPA_1880 putative methyl-accepting chemotaxis protein K03776 aer; aerotaxis receptor
D YPA_3073 putative flagellar assembly protein K02411 fliH; flagellar assembly protein FliH
D YPA_1204 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D YPA_3072 putative flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D YPA_1203 flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D YPA_1202 flagellar protein FliJ K02413 fliJ; flagellar protein FliJ
D YPA_1197 flagellar protein FliO K02418 fliO; flagellar protein FliO/FliZ
D YPA_3084 putative flagellar assembly protein K02419 fliP; flagellar biosynthesis protein FliP
D YPA_1196 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D YPA_3085 putative flagellar assembly protein K02420 fliQ; flagellar biosynthesis protein FliQ
D YPA_1195 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D YPA_3086 putative flagellar assembly protein K02421 fliR; flagellar biosynthesis protein FliR
D YPA_1194 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D YPA_3088 hypothetical protein K02400 flhA; flagellar biosynthesis protein FlhA
D YPA_1165 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D YPA_3087 putative flagellar assembly protein K02401 flhB; flagellar biosynthesis protein FlhB
D YPA_1164 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D YPA_1167 flagellar protein FlhE precursor K03516 flhE; flagellar protein FlhE
D YPA_3074 puative flagellar motor switch protein K02410 fliG; flagellar motor switch protein FliG
D YPA_1205 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D YPA_3081 putative flagellar motor switch protein K02416 fliM; flagellar motor switch protein FliM
D YPA_3082 flagellar motor switch protein K02416 fliM; flagellar motor switch protein FliM
D YPA_1199 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D YPA_3083 flagellar switch protein K02417 fliN; flagellar motor switch protein FliN
D YPA_1198 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D YPA_3078 putative flagellar M-ring protein K02409 fliF; flagellar M-ring protein FliF
D YPA_1206 flagellar M-ring protein K02409 fliF; flagellar M-ring protein FliF
D YPA_3060 putative flagellar P-ring protein K02394 flgI; flagellar P-ring protein FlgI
D YPA_1181 flagellar P-ring protein precursor K02394 flgI; flagellar P-ring protein FlgI
D YPA_3068 putative flagella basal body P-ring formation protein K02386 flgA; flagellar basal body P-ring formation protein FlgA
D YPA_1173 flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D YPA_3061 putative flagellar L-ring protein K02393 flgH; flagellar L-ring protein FlgH
D YPA_1180 flagellar L-ring protein precursor K02393 flgH; flagellar L-ring protein FlgH
D YPA_3046 putative flagellar biogenesis protein K02415 fliL; flagellar protein FliL
D YPA_1200 flagellar protein FliL K02415 fliL; flagellar protein FliL
D YPA_3079 putative flagellar hook-basal body complex protein K02408 fliE; flagellar hook-basal body complex protein FliE
D YPA_1207 flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D YPA_3047 putative flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK
D YPA_1201 flagellar hook-length control protein FliK K02414 fliK; flagellar hook-length control protein FliK
D YPA_3067 putative flagellar basal-body rod protein K02387 flgB; flagellar basal-body rod protein FlgB
D YPA_1174 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D YPA_3066 putative flagellar basal-body rod protein K02388 flgC; flagellar basal-body rod protein FlgC
D YPA_1175 flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D YPA_3065 putative basal-body rod modification protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D YPA_1176 basal-body rod modification protein FlgD K02389 flgD; flagellar basal-body rod modification protein FlgD
D YPA_3063 hypothetical protein K02391 flgF; flagellar basal-body rod protein FlgF
D YPA_1178 flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D YPA_3062 putative flagellar basal-body rod protein K02392 flgG; flagellar basal-body rod protein FlgG
D YPA_1179 flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D YPA_3059 putative flagellar protein K02395 flgJ; peptidoglycan hydrolase FlgJ
D YPA_1182 flagellar protein FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ
D YPA_3064 putative flagellar hook protein K02390 flgE; flagellar hook protein FlgE
D YPA_1177 flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE
D YPA_3058 putative flagellar hook-associated protein K02396 flgK; flagellar hook-associated protein 1
D YPA_1183 flagellar hook-associated protein 1 K02396 flgK; flagellar hook-associated protein 1
D YPA_3057 putative flagellar hook-associated protein K02397 flgL; flagellar hook-associated protein 3 FlgL
D YPA_1184 flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL
D YPA_3070 hypothetical protein K02399 flgN; flagellar biosynthesis protein FlgN
D YPA_1171 flagella synthesis protein FlgN K02399 flgN; flagellar biosynthesis protein FlgN
D YPA_2268 conserved hypothetical protein K18475 fliB; lysine-N-methylase [EC:2.1.1.-]
D YPA_2269 hypothetical protein K18475 fliB; lysine-N-methylase [EC:2.1.1.-]
D YPA_3051 putative flagellin K02406 fliC; flagellin
D YPA_3052 putative flagellin K02406 fliC; flagellin
D YPA_3053 putative flagellin K02406 fliC; flagellin
D YPA_1218 thermoregulated motility protein K02406 fliC; flagellin
D YPA_3050 putative flagellar hook-associated protein K02407 fliD; flagellar hook-associated protein 2
D YPA_1217 flagellar hook-associated protein 2 K02407 fliD; flagellar hook-associated protein 2
D YPA_3049 putative flagellar protein K02422 fliS; flagellar secretion chaperone FliS
D YPA_1216 flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS
D YPA_1215 FliT K02423 fliT; flagellar protein FliT
D YPA_1859 hypothetical protein K02403 flhD; flagellar transcriptional activator FlhD
D YPA_1858 flagellum biosynthesis transcription activator K02402 flhC; flagellar transcriptional activator FlhC
D YPA_3045 putative RNA polymerase sigma factor for flagellar operon K02405 fliA; RNA polymerase sigma factor FliA
D YPA_1219 RNA polymerase sigma factor for flagellar operon K02405 fliA; RNA polymerase sigma factor FliA
D YPA_3044 putative flagellar motor transmembrane channel protein K02556 motA; chemotaxis protein MotA
D YPA_1857 chemotaxis MotA protein K02556 motA; chemotaxis protein MotA
D YPA_3043 putative chemotaxis membrane protein K02557 motB; chemotaxis protein MotB
D YPA_1856 chemotaxis MotB protein K02557 motB; chemotaxis protein MotB
D YPA_3080 sigma-54 transcriptional regulatory protein K10943 flrC; two-component system, response regulator FlrC
D YPA_1222 putative cystine-binding periplasmic protein K02424 tcyA; L-cystine transport system substrate-binding protein
D YPA_1220 putative alternative sigma factor regulatory protein K02425 fliZ; regulator of sigma S factor FliZ
D YPA_3069 putative flagellar regulatory protein K02398 flgM; negative regulator of flagellin synthesis FlgM
D YPA_1172 negative regulator of flagellin synthesis K02398 flgM; negative regulator of flagellin synthesis FlgM
D YPA_0325 hypothetical protein K02669 pilT; twitching motility protein PilT
D YPA_2321 putative fimbrial biogenesis protein K02656 pilF; type IV pilus assembly protein PilF
D YPA_3097 putative membrane protein K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D YPA_3098 putative membrane protein K02279 cpaB; pilus assembly protein CpaB
D YPA_3099 hypothetical protein K02280 cpaC; pilus assembly protein CpaC
D YPA_3101 hypothetical protein K02282 cpaE; pilus assembly protein CpaE
D YPA_3102 putative type II secretion protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D YPA_1811 putative fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D YPA_1814 putative fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D YPA_1300 fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D YPA_0142 putative fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D YPA_2136 frimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D YPA_1810 putative chaperone protein K07346 fimC; fimbrial chaperone protein
D YPA_1824 putative chaperone protein K07346 fimC; fimbrial chaperone protein
D YPA_0141 putative fimbrial chaperone K07346 fimC; fimbrial chaperone protein
D YPA_1812 putative outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPA_1825 outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPA_0140 putative outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPA_1022 outer membrane usher protein PsaC precursor K07347 fimD; outer membrane usher protein
D YPA_MT0069 F1 capsule anchoring protein K07347 fimD; outer membrane usher protein
D YPA_1298 fimbrial usher protein K07347 fimD; outer membrane usher protein
D YPA_2134 hypothetical protein K07347 fimD; outer membrane usher protein
D YPA_1822 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D YPA_1826 putative membrane protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D YPA_1823 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D YPA_1821 hypothetical protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:ypa04812]
D YPA_3678 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D YPA_3541 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D YPA_3542 cell division protein FtsA K03590 ftsA; cell division protein FtsA
D YPA_1461 septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D YPA_1460 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D YPA_1459 cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor
D YPA_CD0048 plasmid partitioning transcription repressor K03496 parA; chromosome partitioning protein
D YPA_MT0081 partitioning protein A K03496 parA; chromosome partitioning protein
D YPA_MT0090 DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D YPA_MT0082 partitioning protein B K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D YPA_CD0049 plasmid partitioning control protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:ypa04147]
D YPA_2612 heat shock protein HtpG K04079 HSP90A; molecular chaperone HtpG
D YPA_2874 enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D YPA_1514 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D YPA_0343 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D YPA_1447 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D YPA_1738 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D YPA_3302 peptidyl-prolyl cis-trans isomerase A K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D YPA_2689 putative alkyl hydroperoxide reductase subunit c K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24]
D YPA_3931 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D YPA_4062 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D YPA_0026 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D YPA_2312 inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D YPA_3626 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu
D YPA_3269 translation elongation factor 1A (EF-1A/EF-Tu) K02358 tuf; elongation factor Tu
D YPA_1911 hypothetical protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D YPA_1620 putative membrane protein K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7
D YPA_3561 putative AMP-binding enzyme-family protein K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D YPA_1457 long-chain-fatty-acid-CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D YPA_2611 Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D YPA_4107 putative phosphoribosyl transferase protein K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D YPA_2617 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D YPA_0099 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D YPA_0866 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D YPA_0865 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D YPA_0905 putative pyridoxal-dependent decarboxylase K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105]
D YPA_0070 D-fructose 1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D YPA_1045 galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D YPA_3771 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D YPA_3451 hypothetical protein K00864 glpK; glycerol kinase [EC:2.7.1.30]
D YPA_2832 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D YPA_3517 L-glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D YPA_3441 porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D YPA_1647 alkaline phosphatase precursor K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D YPA_1004 putative D-isomer specific 2-hydroxyacid dehydrogenase family protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D YPA_0353 D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D YPA_3601 IMP cyclohydrolase / phosphoribosylaminoimidazolecarboxamide formyltransferase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D YPA_2919 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPA_0105 putative pyridine nucleotide-disulphide oxidoreductase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPA_1449 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D YPA_3456 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D YPA_1041 phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
C 02048 Prokaryotic defense system [BR:ypa02048]
D YPA_1965 CRISPR-associated protein, Cas1 family K15342 cas1; CRISP-associated protein Cas1
D YPA_1964 CRISPR-associated helicase, Cas3 family K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
D YPA_1963 CRISPR-associated protein, Csy1 family K19127 csy1; CRISPR-associated protein Csy1
D YPA_1962 CRISPR-associated protein, Csy2 family K19128 csy2; CRISPR-associated protein Csy2
D YPA_1961 CRISPR-associated protein, Csy3 family K19129 csy3; CRISPR-associated protein Csy3
D YPA_1960 CRISPR-associated protein, Csy4 family K19130 csy4; CRISPR-associated endonuclease Csy4 [EC:3.1.-.-]
D YPA_3315 DNA adenine methylase Dam K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D YPA_MT0084 DNA methylase K07319 yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D YPA_3897 hypothetical protein K07452 mcrB; 5-methylcytosine-specific restriction enzyme B [EC:3.1.21.-]
D YPA_3896 hypothetical protein K19147 mcrC; 5-methylcytosine-specific restriction enzyme subunit McrC
D YPA_3415 conserved hypothetical protein K19048 symE; toxic protein SymE
D YPA_0388 hypothetical protein K06218 relE; mRNA interferase RelE/StbE
D YPA_3641 putative DNA-damage-inducible protein K07473 dinJ; DNA-damage-inducible protein J
D YPA_2162 hypothetical protein K18843 hicB; antitoxin HicB
D YPA_2633 modulating protein YmoA (histone-like protein) K05839 hha; haemolysin expression modulating protein
D YPA_2632 hypothetical protein K19162 tomB; hha toxicity modulator TomB
D YPA_1699 phage shock protein C K03973 pspC; phage shock protein C
D YPA_1700 phage shock protein B K03970 pspB; phage shock protein B
D YPA_CD0085 hypothetical protein K19092 parE1_3_4; toxin ParE1/3/4
D YPA_CD0050 hypothetical protein K07746 parD1_3_4; antitoxin ParD1/3/4
D YPA_1209 hypothetical protein K07341 doc; death on curing protein
D YPA_0390 hypothetical protein K13651 mqsR; motility quorum-sensing regulator / GCU-specific mRNA interferase toxin
D YPA_0391 hypothetical protein K13655 mqsA; HTH-type transcriptional regulator / antitoxin MqsA
D YPA_2949 hypothetical protein K19334 tabA; biofilm protein TabA
D YPA_2033 hypothetical protein K19334 tabA; biofilm protein TabA
D YPA_1942 hypothetical protein K12148 bssS; biofilm regulator BssS
D YPA_3541 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D YPA_3678 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D YPA_3120 DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D YPA_3123 DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D YPA_2173 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D YPA_0372 hypothetical protein K19168 cptA; toxin CptA
D YPA_0371 hypothetical protein K09159 cptB; antitoxin CptB
D YPA_2337 putative aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YPA_1498 putative aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels [BR:ypa04040]
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules [BR:ypa04090]
C 01504 Antimicrobial resistance genes [BR:ypa01504]
D YPA_3037 multidrug translocase K08160 mdfA; MFS transporter, DHA1 family, multidrug/chloramphenicol efflux transport protein
D YPA_1382 putative two-component system sensor protein K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D YPA_1383 transcriptional activator K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
D YPA_1891 sensor protein kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D YPA_1890 response regulator protein K07660 phoP; two-component system, OmpR family, response regulator PhoP
D YPA_2985 multidrug efflux protein K03585 acrA; membrane fusion protein, multidrug efflux system
D YPA_2627 multidrug efflux protein K03585 acrA; membrane fusion protein, multidrug efflux system
D YPA_2628 multidrug efflux protein K18138 acrB; multidrug efflux pump
D YPA_2984 multidrug efflux protein K18138 acrB; multidrug efflux pump
D YPA_3357 putative integral membrane efflux protein K18138 acrB; multidrug efflux pump
D YPA_2983 outer membrane efflux lipoprotein K18139 oprM; outer membrane protein, multidrug efflux system
D YPA_2580 putative regulatory protein K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D YPA_3129 ABC-transporter outer membrane component K12340 tolC; outer membrane protein
D YPA_0705 putative outer membrane porin C protein K09476 ompF; outer membrane pore protein F
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins [BR:ypa00536]
D YPA_1986 putative hemolysin K15125 fhaB; filamentous hemagglutinin
D YPA_3190 putative adhesin K15125 fhaB; filamentous hemagglutinin
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:ypa00537]
D YPA_1647 alkaline phosphatase precursor K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:ypa03100]
D YPA_r071 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YPA_r080 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YPA_r091 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YPA_r059 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YPA_r067 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YPA_r015 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YPA_r055 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YPA_r036 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D YPA_r048 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D YPA_r041 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D YPA_r013 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D YPA_r029 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D YPA_r030 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D YPA_r046 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D YPA_r063 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D YPA_r064 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D YPA_r066 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D YPA_r002 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D YPA_r010 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D YPA_r026 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D YPA_r087 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D YPA_r095 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YPA_r021 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YPA_r045 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YPA_r101 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YPA_r102 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YPA_r016 tRNA-His K14226 tRNA-His; tRNA His
D YPA_r072 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D YPA_r092 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D YPA_r081 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D YPA_r007 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPA_r062 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPA_r074 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPA_r017 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPA_r100 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPA_r047 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPA_r032 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YPA_r056 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YPA_r033 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YPA_r044 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YPA_r034 pseudogene K14229 tRNA-Lys; tRNA Lys
D YPA_r061 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPA_r065 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPA_r077 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPA_r006 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPA_r022 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPA_r023 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPA_r019 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D YPA_r103 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D YPA_r018 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D YPA_r099 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D YPA_r040 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D YPA_r038 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YPA_r050 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YPA_r049 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YPA_r035 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YPA_r094 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D YPA_r005 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D YPA_r039 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D YPA_r097 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D YPA_r014 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D YPA_r051 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D YPA_r096 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D YPA_r057 tRNA-Val K14237 tRNA-Val; tRNA Val
D YPA_r058 tRNA-Val K14237 tRNA-Val; tRNA Val
D YPA_r052 tRNA-Val K14237 tRNA-Val; tRNA Val
D YPA_r053 tRNA-Val K14237 tRNA-Val; tRNA Val
D YPA_r104 tRNA-Sec K14238 tRNA-Sec; tRNA Sec
D YPA_r009 16S RNA K01977 16SrRNA; 16S ribosomal RNA
D YPA_r073 16S RNA K01977 16SrRNA; 16S ribosomal RNA
D YPA_r025 16S RNA K01977 16SrRNA; 16S ribosomal RNA
D YPA_r082 16S RNA K01977 16SrRNA; 16S ribosomal RNA
D YPA_r001 16S RNA K01977 16SrRNA; 16S ribosomal RNA
D YPA_r088 16S RNA K01977 16SrRNA; 16S ribosomal RNA
D YPA_r093 16S RNA K01977 16SrRNA; 16S ribosomal RNA
D YPA_r011 23S RNA K01980 23SrRNA; 23S ribosomal RNA
D YPA_r003 23S RNA K01980 23SrRNA; 23S ribosomal RNA
D YPA_r086 23S RNA K01980 23SrRNA; 23S ribosomal RNA
D YPA_r070 23S RNA K01980 23SrRNA; 23S ribosomal RNA
D YPA_r027 23S RNA K01980 23SrRNA; 23S ribosomal RNA
D YPA_r079 23S RNA K01980 23SrRNA; 23S ribosomal RNA
D YPA_r090 23S RNA K01980 23SrRNA; 23S ribosomal RNA
D YPA_r004 5S RNA K01985 5SrRNA; 5S ribosomal RNA
D YPA_r078 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPA_r012 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPA_r028 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPA_r089 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPA_r069 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPA_r085 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YPA_r068 ffs; SRP RNA K01983 ffs; SRP RNA
D YPA_r098 rnpB; RNA component of RNaseP K01978 rnpB; M1 RNA
D YPA_r031 ssrA; ssrA K15035 ssrA; transfer-messenger RNA
D YPA_r060 tke1 RNA K15841 glmY; small regulatory RNA GlmY
D YPA_r024 regulatory RNA csrB K18515 csrB; small regulatory RNA CsrB
D YPA_r083 regulatory RNA CsrC K18516 csrC; small regulatory RNA CsrC
D YPA_r084 Spot 42 RNA K18527 spf; small regulatory RNA Spot 42
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D YPA_2031 gluconate 5-dehydrogenase K00046 idnO; gluconate 5-dehydrogenase [EC:1.1.1.69]
D YPA_3115 putative aldo/keto reductase family protein K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346]
D YPA_2551 putative aldo/keto reductase K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346]
D YPA_0553 putative aldo/keto reductase K06222 dkgB; 2,5-diketo-D-gluconate reductase B [EC:1.1.1.346]
D YPA_1597 hypothetical protein K22025 denD; D-erythronate 2-dehydrogenase [EC:1.1.1.410]
D YPA_0851 putative dehydrogenase K08317 hcxA; hydroxycarboxylate dehydrogenase A [EC:1.1.1.-]
D YPA_2169 putative ion channel protein K19265 gpr; L-glyceraldehyde 3-phosphate reductase [EC:1.1.1.-]
D YPA_2792 putative Zinc-binding dehydrogenase K23271 eltD; erythritol/L-threitol dehydrogenase [EC:1.1.1.-]
D YPA_3976 putative oxidoreductase K26080 E1.1.3.29; N-acylhexosamine oxidase [EC:1.1.3.29]
D YPA_1959 putative oxidoreductase K23107 yajO; 1-deoxyxylulose-5-phosphate synthase [EC:1.1.-.-]
D YPA_3199 2,4-dienoyl-CoA reductase K00219 fadH; 2,4-dienoyl-CoA reductase (NADPH2) [EC:1.3.1.34]
D YPA_1945 putative sarcosine oxidase K02846 solA; N-methyl-L-tryptophan oxidase [EC:1.5.3.-]
D YPA_3966 quinone oxidoreductase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D YPA_1869 Zinc-binding dehydrogenase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D YPA_3121 putative modulator of drug activity K03923 mdaB; NADPH dehydrogenase (quinone) [EC:1.6.5.10]
D YPA_1672 acyl carrier protein phosphodiesterase K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17]
D YPA_0075 peptide methionine sulfoxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D YPA_1515 hypothetical protein K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D YPA_3652 putative glutathione S-transferase K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-]
D YPA_3758 hypothetical protein K07393 ECM4; glutathionyl-hydroquinone reductase [EC:1.8.5.7]
D YPA_3675 hypothetical protein K07147 msrP; methionine sulfoxide reductase catalytic subunit [EC:1.8.-.-]
D YPA_2823 cytochrome B561 K12262 cybB; superoxide oxidase [EC:1.10.3.17]
D YPA_2801 putative cytochrome C peroxidase K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5]
D YPA_2255 bacterioferritin comigratory protein K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D YPA_1691 thiol peroxidase (atypical 2-Cys peroxiredoxin) K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D YPA_2213 hypothetical protein K07223 yfeX; porphyrinogen peroxidase [EC:1.11.1.-]
D YPA_3785 hypothetical protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D YPA_1507 hypothetical protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D YPA_2348 flavohemoprotein K05916 hmp; nitric oxide dioxygenase [EC:1.14.12.17]
D YPA_1989 putative dioxygenase alpha subunit K22443 cntA; carnitine monooxygenase subunit [EC:1.14.13.239]
D YPA_1988 putative dioxygenase beta subunit K22444 cntB; carnitine monooxygenase subunit [EC:1.14.13.239]
D YPA_0824 putative siderophore biosynthetic enzyme K27501 alcA; putrescine N-hydroxylase [EC:1.14.13.252]
D YPA_1158 ferritin K02217 ftnA; ferritin [EC:1.16.3.2]
D YPA_2911 cell division protein SufI K14588 cueO; cuproxidase [EC:1.16.3.4]
D YPA_3453 ferredoxin--NADP reductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D YPA_2261 putative arsenate reductase K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1]
D YPA_2957 ribonucleoside-triphosphate reductase class III activase subunit K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4]
D YPA_0672 pyruvate formate-lyase 1 activating enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D YPA_0648 putative oxidoreductase K11933 hcr; NADH oxidoreductase Hcr [EC:1.-.-.-]
D YPA_2786 protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D YPA_1735 cyclopropane-fatty-acyl-phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D YPA_2001 puative trans-aconitate methyltransferase K00598 tam; trans-aconitate 2-methyltransferase [EC:2.1.1.144]
D YPA_1332 putative tellurite resistance protein K16868 tehB; tellurite methyltransferase [EC:2.1.1.265]
D YPA_3995 coproporphyrinogen III oxidase, anaerobic K21936 chuW; anaerobilin synthase [EC:2.1.1.342]
D YPA_2481 putative apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D YPA_2978 putative acetyltransferase K03824 yhbS; putative acetyltransferase [EC:2.3.1.-]
D YPA_3009 putative acetyltransferase K03826 yiaC; putative acetyltransferase [EC:2.3.1.-]
D YPA_2945 putative acetyltransferase K03828 yjgM; putative acetyltransferase [EC:2.3.1.-]
D YPA_0144 hypothetical protein K22757 QCT; glutaminyl-peptide cyclotransferase [EC:2.3.2.5]
D YPA_0661 putative leucyl/phenylalanyl-tRNA-protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6]
D YPA_3180 hypothetical protein K21298 E2.4.1.333; 1,2-beta-oligoglucan phosphorylase [EC:2.4.1.333]
D YPA_1970 hypothetical protein K20885 K20885; beta-1,2-mannobiose phosphorylase / 1,2-beta-oligomannan phosphorylase [EC:2.4.1.339 2.4.1.340]
D YPA_2762 hypothetical protein K05812 DTWD2; tRNA-uridine aminocarboxypropyltransferase [EC:2.5.1.25]
D YPA_0484 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D YPA_2724 thiamine biosynthesis lipoprotein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D YPA_0949 hypothetical protein K21948 otnK; 3-dehydrotetronate 4-kinase [EC:2.7.1.217]
D YPA_1754 hypothetical protein K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33]
D YPA_3137 glutamate-ammonia-ligase adenylyltransferase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]
D YPA_1757 hypothetical protein K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108]
D YPA_1756 conserved hypothetical protein K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108]
D YPA_0019 isocitrate dehydrogenase kinase/phosphatase K00906 aceK; isocitrate dehydrogenase kinase/phosphatase [EC:2.7.11.5 3.1.3.-]
D YPA_0598 hypothetical protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D YPA_1569 hypothetical protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D YPA_2096 putative phosphohistidine phosphatase K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D YPA_0992 putative membrane protein K26148 K26148; c-di-GMP phosphodiesterase [EC:3.1.4.52]
D YPA_3824 diguanylate cyclase/phosphodiesterase K26149 K26149; c-di-GMP phosphodiesterase [EC:3.1.4.52]
D YPA_2238 putative sulfatase K01138 K01138; uncharacterized sulfatase [EC:3.1.6.-]
D YPA_0428 putative sulfatase K01138 K01138; uncharacterized sulfatase [EC:3.1.6.-]
D YPA_0440 putative sulfatase K01138 K01138; uncharacterized sulfatase [EC:3.1.6.-]
D YPA_0333 endonuclease I K01150 endA; deoxyribonuclease I [EC:3.1.21.1]
D YPA_3850 putative metalloenzyme K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D YPA_1918 putative deoxyribonuclease K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D YPA_0249 Sec-independent protein translocase TatD K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D YPA_2460 hypothetical protein K01175 ybfF; esterase [EC:3.1.-.-]
D YPA_2716 hypothetical protein K11750 frsA; esterase FrsA [EC:3.1.-.-]
D YPA_3825 Cellulase K20542 bcsZ; endoglucanase [EC:3.2.1.4]
D YPA_0417 putative galactosidase K01224 E3.2.1.89; arabinogalactan endo-1,4-beta-galactosidase [EC:3.2.1.89]
D YPA_1839 N-acetylmuramoyl-L-alanine amidase K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D YPA_3231 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D YPA_0869 putative polysaccharide deacetylase K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104]
D YPA_2411 hypothetical protein K03478 chbG; chitin disaccharide deacetylase [EC:3.5.1.105]
D YPA_1150 hypothetical protein K09900 E3.5.1.135; N4-acetylcytidine amidohydrolase [EC:3.5.1.135]
D YPA_3713 hypothetical protein K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D YPA_3138 hypothetical protein K18446 ygiF; triphosphatase [EC:3.6.1.25]
D YPA_2643 putative haloacid dehalogenase-like hydrolase K11938 cof; HMP-PP phosphatase [EC:3.6.1.-]
D YPA_2223 hypothetical protein K12945 nudK; GDP-mannose pyrophosphatase NudK [EC:3.6.1.-]
D YPA_2226 conserved hypothetical protein K12945 nudK; GDP-mannose pyrophosphatase NudK [EC:3.6.1.-]
D YPA_1932 hypothetical protein K25422 yceF; 7-methyl-GTP pyrophosphatase [EC:3.6.1.-]
D YPA_0005 hypothetical protein K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D YPA_0950 putative class II aldolase-family protein K22130 otnC; 3-dehydro-4-phosphotetronate decarboxylase [EC:4.1.1.104]
D YPA_1592 putative transaldolase K08313 fsaA; fructose-6-phosphate aldolase 1 [EC:4.1.2.-]
D YPA_3916 hypothetical protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D YPA_0445 hypothetical protein K08961 K08961; chondroitin-sulfate-ABC endolyase/exolyase [EC:4.2.2.20 4.2.2.21]
D YPA_0499 cysteine desulfurase K01766 csdA; cysteine sulfinate desulfinase [EC:4.4.1.-]
D YPA_1237 hypothetical protein K17948 nanM; N-acetylneuraminate epimerase [EC:5.1.3.24]
D YPA_3959 hypothetical protein K03534 rhaM; L-rhamnose mutarotase [EC:5.1.3.32]
D YPA_0952 hypothetical protein K22131 otnI; 2-dehydrotetronate isomerase [EC:5.3.1.35]
D YPA_0069 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45]
D YPA_1601 putative integral membrane protein K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2]
D YPA_1603 putative iron-sulfur binding NADH dehydrogenase K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2]
D YPA_1604 putative iron-sulfur protein K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2]
D YPA_2730 NADH-ubiquinone oxidoreductase subunit A K00346 nqrA; Na+-transporting NADH:ubiquinone oxidoreductase subunit A [EC:7.2.1.1]
D YPA_2729 NADH-ubiquinone oxidoreductase subunit B K00347 nqrB; Na+-transporting NADH:ubiquinone oxidoreductase subunit B [EC:7.2.1.1]
D YPA_2728 Na+-translocating NADH-quinone reductase subunit C K00348 nqrC; Na+-transporting NADH:ubiquinone oxidoreductase subunit C [EC:7.2.1.1]
D YPA_2727 Na+-translocating NADH-quinone reductase subunit D K00349 nqrD; Na+-transporting NADH:ubiquinone oxidoreductase subunit D [EC:7.2.1.1]
D YPA_2726 Na+-translocating NADH-quinone reductase subunit E K00350 nqrE; Na+-transporting NADH:ubiquinone oxidoreductase subunit E [EC:7.2.1.1]
D YPA_1317 putative Na(+)-translocating NADH-quinone reductase subunit E K00350 nqrE; Na+-transporting NADH:ubiquinone oxidoreductase subunit E [EC:7.2.1.1]
D YPA_2725 NADH-uniquinone oxidoreductase subunit F K00351 nqrF; Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:7.2.1.1]
D YPA_0202 putative P-type cation-translocating membrane ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]
D YPA_1860 Mg(2+) transport ATPase protein B K01531 mgtA; P-type Mg2+ transporter [EC:7.2.2.14]
C 99981 Carbohydrate metabolism
D YPA_2896 sugar fermentation stimulation protein K06206 sfsA; sugar fermentation stimulation protein A
C 99982 Energy metabolism
D YPA_3025 putative formate dehydrogenase K02379 fdhD; FdhD protein
D YPA_2332 adrenodoxin family ferredoxin K04755 fdx; ferredoxin, 2Fe-2S
D YPA_0926 putative iron-sulphur binding protein K11107 yfaE; ferredoxin
D YPA_1600 hypothetical protein K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G
D YPA_1599 putative membrane protein K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E
D YPA_1605 putative membrane protein K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A
D YPA_3939 4Fe-4S ferrodoxin K05796 hydN; electron transport protein HydN
D YPA_0001 putative flavoprotein K06205 mioC; MioC protein
D YPA_0376 flavodoxin 2 K03840 fldB; flavodoxin II
D YPA_2336 NifU family protein K04488 iscU; nitrogen fixation protein NifU and related proteins
D YPA_3707 putative cytochrome K15536 cybC; soluble cytochrome b562
D YPA_2824 putative cytochrome B562 K15536 cybC; soluble cytochrome b562
D YPA_2230 periplasmic nitrate reductase chaperone NapD K02570 napD; periplasmic nitrate reductase NapD
D YPA_2231 periplasmic nitrate reductase maturation protein NapF K02572 napF; ferredoxin-type protein NapF
D YPA_2462 flavodoxin 1 K03839 fldA; flavodoxin I
D YPA_2227 periplasmic nitrate reductase subunit NapC K02569 napC; cytochrome c-type protein NapC
C 99983 Lipid metabolism
D YPA_3902 putative acyl-CoA dehydrogenase K09456 aidB; putative acyl-CoA dehydrogenase
C 99984 Nucleotide metabolism
D YPA_2378 NrdI-like protein K03647 nrdI; protein involved in ribonucleotide reduction
C 99985 Amino acid metabolism
D YPA_2180 putative membrane protein K06203 cysZ; CysZ protein
D YPA_0537 hypothetical protein K08234 yaeR; glyoxylase I family protein
D YPA_1689 hypothetical protein K14054 mpaA; murein peptide amidase A
D YPA_0324 hypothetical protein K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
D YPA_1584 putative membrane protein K08992 lapA; lipopolysaccharide assembly protein A
D YPA_1585 hypothetical protein K19804 lapB; lipopolysaccharide assembly protein B
D YPA_0673 hypothetical protein K07270 K07270; glycosyl transferase, family 25
C 99987 Cofactor metabolism
D YPA_0169 putative protoheme IX biogenesis protein K02498 hemY; HemY protein
D YPA_0245 2-octaprenylphenol hydroxylase K03688 ubiB; ubiquinone biosynthesis protein
D YPA_0244 hypothetical protein K03690 ubiJ; ubiquinone biosynthesis accessory factor UbiJ
D YPA_3134 hypothetical protein K09806 ubiK; ubiquinone biosynthesis accessory factor UbiK
D YPA_2979 putative lipid carrier protein K24843 ubiT; O2-independent ubiquinone biosynthesis accessory factor UbiT
D YPA_3530 molybdopterin-guanine dinucleotide biosynthesis protein B K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein
D YPA_3366 putative integral membrane efflux protein K12942 abgT; aminobenzoyl-glutamate transport protein
C 99988 Secondary metabolism
D YPA_3118 cell division protein SufI K04753 sufI; suppressor of ftsI
C 99999 Others
D YPA_3221 putative membrane protein K15977 K15977; putative oxidoreductase
D YPA_2763 putative acetyltransferase K09181 yfiQ; acetyltransferase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D YPA_3703 putative ribonuclease inhibitor K03623 yhcO; ribonuclease inhibitor
D YPA_3656 cold-shock DNA-binding protein family K03704 cspA; cold shock protein
D YPA_3657 cold-shock DNA-binding protein family K03704 cspA; cold shock protein
D YPA_0656 cold-shock DNA-binding protein family K03704 cspA; cold shock protein
D YPA_0692 cold-shock DNA-binding protein family K03704 cspA; cold shock protein
D YPA_1865 cold-shock DNA-binding protein family K03704 cspA; cold shock protein
D YPA_1120 cold-shock DNA-binding protein family K03704 cspA; cold shock protein
D YPA_2504 cold shock protein E (CspE) K03704 cspA; cold shock protein
D YPA_2386 cold-shock DNA-binding protein family K03704 cspA; cold shock protein
D YPA_3610 regulator of sigma D K07740 rsd; regulator of sigma D
D YPA_2638 nitrogen regulatory protein P-II K04752 glnK; nitrogen regulatory protein P-II 2
D YPA_3335 hypothetical protein K06959 tex; protein Tex
C 99974 Translation
C 99975 Protein processing
D YPA_1679 putative heat shock protein K03668 hslJ; heat shock protein HslJ
D YPA_0657 hypothetical protein K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D YPA_2653 Trigger factor K03545 tig; trigger factor
D YPA_3674 putative membrane protein K17247 msrQ; methionine sulfoxide reductase heme-binding subunit
D YPA_3030 putative formate dehydrogenase formation protein K02380 fdhE; FdhE protein
D YPA_2395 urease accessory protein K03187 ureE; urease accessory protein
D YPA_2396 urease accessory protein K03188 ureF; urease accessory protein
D YPA_2397 urease accessory protein K03189 ureG; urease accessory protein
D YPA_2398 hypothetical protein K03190 ureD; urease accessory protein
D YPA_0579 SsrA-binding protein K03664 smpB; SsrA-binding protein
D YPA_2379 ribonucleoside-diphosphate reductase class Ib glutaredoxin subunit K06191 nrdH; glutaredoxin-like protein NrdH
D YPA_0120 putative magnesium chelatase family protein K07391 comM; magnesium chelatase family protein
D YPA_3160 hypothetical protein K07396 K07396; putative protein-disulfide isomerase
D YPA_0468 hypothetical protein K07396 K07396; putative protein-disulfide isomerase
D YPA_3296 hypothetical protein K07397 yhfA; putative redox protein
D YPA_3342 hypothetical protein K07400 nfuA; Fe/S biogenesis protein NfuA
D YPA_4025 putative type III secretion apparatus K18984 ssaE; secretion system chaperone SsaE
C 99976 Replication and repair
D YPA_2634 putative 6-O-methylguanine DNA methyltransferase family protein K07443 ybaZ; methylated-DNA-protein-cysteine methyltransferase related protein
D YPA_0506 exodeoxyribonuclease IX K01146 xni; protein Xni
D YPA_3493 putative DNA repair protein K03630 radC; DNA repair protein RadC
D YPA_0242 putative DNA recombination protein K09760 rmuC; DNA recombination protein RmuC
D YPA_0651 hypothetical protein K07459 ybjD; putative ATP-dependent endonuclease of the OLD family
D YPA_3753 hypothetical protein K07460 yraN; putative endonuclease
D YPA_2977 hypothetical protein K07461 K07461; putative endonuclease
D YPA_3230 hypothetical protein K04096 smf; DNA processing protein
D YPA_3149 hypothetical protein K07474 xtmA; phage terminase small subunit
D YPA_3150 hypothetical protein K07474 xtmA; phage terminase small subunit
D YPA_0668 Recombination protein MgsA K07478 ycaJ; putative ATPase
D YPA_3228 putative DNA-binding protein K07479 yrdD; putative DNA topoisomerase
D YPA_0392 plasmid and phage DNA primase K06919 K06919; putative DNA primase/helicase
D YPA_3945 putative transposase K07480 insB; insertion element IS1 protein InsB
D YPA_0300 insertion sequence protein K07480 insB; insertion element IS1 protein InsB
D YPA_CD0045 hypothetical protein K07483 K07483; transposase
D YPA_CD0065 hypothetical protein K07483 K07483; transposase
D YPA_0268 insertion element IS1661 DNA-binding protein K07483 K07483; transposase
D YPA_4137 insertion element IS1661 DNA-binding protein K07483 K07483; transposase
D YPA_3395 insertion element IS1661 DNA-binding protein K07483 K07483; transposase
D YPA_1007 insertion element IS1661 DNA-binding protein K07483 K07483; transposase
D YPA_3039 insertion element IS1661 DNA-binding protein K07483 K07483; transposase
D YPA_0042 insertion element IS1661 DNA-binding protein K07483 K07483; transposase
D YPA_2994 insertion element IS1661 DNA-binding protein K07483 K07483; transposase
D YPA_CD0063 hypothetical protein K07483 K07483; transposase
D YPA_3350 insertion element IS1661 DNA-binding protein K07483 K07483; transposase
D YPA_3761 insertion element IS1661 DNA-binding protein K07483 K07483; transposase
D YPA_CD0074 conserved hypothetical protein K07484 K07484; transposase
D YPA_MT0072 transposase K07486 K07486; transposase
D YPA_0293 insertion sequence protein K07489 K07489; transposase
D YPA_0299 insertion sequence protein K07489 K07489; transposase
D YPA_0283 insertion element protein K07489 K07489; transposase
D YPA_0085 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_0510 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_0337 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_MT0038 transposase K07491 rayT; REP-associated tyrosine transposase
D YPA_4080 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_3833 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_3736 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_3563 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_3524 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_3363 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_3268 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_3205 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_2918 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_2815 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_2771 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_2681 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_2567 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_2468 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_2367 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_2263 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_2251 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_2174 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_1923 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_1692 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_1072 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_0815 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_0726 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_0718 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_0212 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_0168 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_1482 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_1659 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_1703 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_1933 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_2682 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_3518 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_3558 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_3617 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_3655 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_3796 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_4072 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_0341 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_0521 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_0578 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_0659 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_0700 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_0883 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_0981 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_1081 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_1169 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_1415 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_1439 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_2186 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_2356 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_2672 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_2772 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_2845 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_2853 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_2934 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_3096 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_3433 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_3448 transposase for the IS1541 insertion element K07491 rayT; REP-associated tyrosine transposase
D YPA_0441 putative transposase K07491 rayT; REP-associated tyrosine transposase
D YPA_0937 putative transposase K07491 rayT; REP-associated tyrosine transposase
D YPA_1740 putative transposase K07491 rayT; REP-associated tyrosine transposase
D YPA_1916 putative transposase K07491 rayT; REP-associated tyrosine transposase
D YPA_2310 putative transposase K07491 rayT; REP-associated tyrosine transposase
D YPA_0789 transposase for the IS285 insertion element K07493 K07493; putative transposase
D YPA_0856 transposase for the IS285 insertion element K07493 K07493; putative transposase
D YPA_0143 transposase for the IS285 insertion element K07493 K07493; putative transposase
D YPA_0880 transposase for the IS285 insertion element K07493 K07493; putative transposase
D YPA_1101 transposase for the IS285 insertion element K07493 K07493; putative transposase
D YPA_1370 transposase for the IS285 insertion element K07493 K07493; putative transposase
D YPA_1495 transposase for the IS285 insertion element K07493 K07493; putative transposase
D YPA_1528 transposase for the IS285 insertion element K07493 K07493; putative transposase
D YPA_1553 transposase for the IS285 insertion element K07493 K07493; putative transposase
D YPA_1791 transposase for the IS285 insertion element K07493 K07493; putative transposase
D YPA_1902 transposase for the IS285 insertion element K07493 K07493; putative transposase
D YPA_1946 transposase for the IS285 insertion element K07493 K07493; putative transposase
D YPA_2133 transposase for the IS285 insertion element K07493 K07493; putative transposase
D YPA_2302 transposase for the IS285 insertion element K07493 K07493; putative transposase
D YPA_2382 transposase for the IS285 insertion element K07493 K07493; putative transposase
D YPA_2530 transposase for the IS285 insertion element K07493 K07493; putative transposase
D YPA_2544 transposase for the IS285 insertion element K07493 K07493; putative transposase
D YPA_3531 putative transposase K07493 K07493; putative transposase
D YPA_1260 hypothetical protein K07493 K07493; putative transposase
D YPA_1937 putative transposase K07493 K07493; putative transposase
D YPA_1943 putative transposase K07493 K07493; putative transposase
D YPA_1944 putative transposase K07493 K07493; putative transposase
D YPA_MT0071 transposase K07493 K07493; putative transposase
D YPA_3599 putative transposase K07497 K07497; putative transposase
D YPA_3600 Helix-turn-helix, Fis-type K07497 K07497; putative transposase
D YPA_2458 IS1400 transposase A K07497 K07497; putative transposase
D YPA_CD0080 transposase ORFA K07497 K07497; putative transposase
D YPA_CD0057 transposase K07497 K07497; putative transposase
D YPA_CD0053 hypothetical protein K07497 K07497; putative transposase
D YPA_CD0046 hypothetical protein K07497 K07497; putative transposase
D YPA_CD0077 transposase K07497 K07497; putative transposase
D YPA_1391 putative integrase core domain protein K07497 K07497; putative transposase
D YPA_CD0066 conserved hypothetical protein K07497 K07497; putative transposase
D YPA_1006 transposase for insertion sequence IS1661 K07497 K07497; putative transposase
D YPA_2993 transposase for insertion sequence IS1661 K07497 K07497; putative transposase
D YPA_0267 transposase for insertion sequence IS1661 K07497 K07497; putative transposase
D YPA_CD0058 transposase K07497 K07497; putative transposase
D YPA_CD0073 hypothetical protein K07497 K07497; putative transposase
D YPA_3394 transposase for insertion sequence IS1661 K07497 K07497; putative transposase
D YPA_3762 transposase for insertion sequence IS1661 K07497 K07497; putative transposase
D YPA_4138 transposase for insertion sequence IS1661 K07497 K07497; putative transposase
D YPA_3038 transposase for insertion sequence IS1661 K07497 K07497; putative transposase
D YPA_0041 transposase for insertion sequence IS1661 K07497 K07497; putative transposase
D YPA_1250 putative transposase K07497 K07497; putative transposase
D YPA_CD0060 hypothetical protein K07497 K07497; putative transposase
D YPA_CD0078 transposase K07497 K07497; putative transposase
D YPA_3353 transposase for insertion sequence IS1661 K07497 K07497; putative transposase
D YPA_1466 hypothetical protein K14059 int; integrase
C 99979 Viral proteins
C 99998 Others
D YPA_1701 phage shock protein A K03969 pspA; phage shock protein A
D YPA_1698 phage shock protein K03971 pspD; phage shock protein D
D YPA_2615 hypothetical protein K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D YPA_0164 putative permease protein K03293 TC.AAT; amino acid transporter, AAT family
D YPA_1990 putative BCCT-family transporter K03451 TC.BCT; betaine/carnitine transporter, BCCT family
D YPA_1710 putative proton dependent peptide transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D YPA_2192 putative permease K03307 TC.SSS; solute:Na+ symporter, SSS family
D YPA_2695 branched-chain amino acid transport system II carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family
D YPA_0561 putative permease K03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family
D YPA_3849 putative Na+ dependent nucleoside transporter-family protein K03317 TC.CNT; concentrative nucleoside transporter, CNT family
D YPA_3460 putative membrane transport protein K03319 TC.DASS; divalent anion:Na+ symporter, DASS family
D YPA_3002 putative membrane protein K07085 K07085; putative transport protein
D YPA_0617 TrkA, Potassium channel-family protein K07085 K07085; putative transport protein
C 99978 Cell growth
D YPA_1555 putative intracellular septation protein K06190 ispZ; intracellular septation protein
D YPA_0199 putative lipoprotein K27311 dcrB; inner membrane lipoprotein DcrB
D YPA_0081 hypothetical protein K07322 ytfE; regulator of cell morphogenesis and NO signaling
D YPA_1504 hypothetical protein K06415 spoVR; stage V sporulation protein R
D YPA_3479 putative membrane protein K22719 envC; murein hydrolase activator
C 99993 Cell motility
D YPA_1909 putative lipoprotein K07337 K07337; penicillin-binding protein activator
D YPA_0729 hypothetical protein K07343 tfoX; DNA transformation protein and related proteins
D YPA_1813 putative chaperone protein K15540 ecpD; chaperone protein EcpD
D YPA_2135 putative pili chaperone protein K15540 ecpD; chaperone protein EcpD
D YPA_0509 Syd protein K15723 syd; SecY interacting protein Syd
C 99995 Signaling proteins
D YPA_2924 putative membrane-bound sensory transducer in beta-lactamase regulation K03807 ampE; AmpE protein
D YPA_3986 putative tellurite resistance protein K05792 terA; tellurite resistance protein TerA
D YPA_3982 tellurium resistance protein K05795 terD; tellurium resistance protein TerD
D YPA_3983 tellurium resistance protein K05795 terD; tellurium resistance protein TerD
D YPA_3987 tellurium resistance protein K05791 terZ; tellurium resistance protein TerZ
D YPA_1817 activator of osmoprotectant transporter ProP K03607 proQ; ProP effector
D YPA_3798 universal stress protein A K06149 uspA; universal stress protein A
D YPA_1650 putative stress protein K14055 uspE; universal stress protein E
D YPA_0240 putative carbon starvation protein K06200 cstA; carbon starvation protein
D YPA_1594 putative carbon starvation protein A K06200 cstA; carbon starvation protein
D YPA_3516 putative GTPase K06207 typA; GTP-binding protein
D YPA_2478 hypothetical protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D YPA_1340 putative phosphate starvation-inducible protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D YPA_1511 hypothetical protein K07180 prkA; serine protein kinase
D YPA_3139 hypothetical protein K07184 ygiM; SH3 domain protein
D YPA_3843 putative membrane protein K07186 smp; membrane protein
D YPA_2664 hypothetical protein K09767 yajQ; cyclic-di-GMP-binding protein
C 99992 Structural proteins
D YPA_0667 putative outer-membrane lipoproteins carrier protein K03634 lolA; outer membrane lipoprotein carrier protein
D YPA_1399 putative lipoprotein K02494 lolB; outer membrane lipoprotein LolB
D YPA_2101 VacJ lipoprotein K04754 mlaA; phospholipid-binding lipoprotein MlaA
D YPA_0153 putative lipopolysaccharide biosynthesis protein K05790 wzzE; lipopolysaccharide biosynthesis protein WzzE
D YPA_1719 putative lipoprotein K06077 slyB; outer membrane lipoprotein SlyB
D YPA_3659 outer membrane lipoprotein K06077 slyB; outer membrane lipoprotein SlyB
D YPA_0529 cationic 19 kDa outer membrane protein precursor K06142 hlpA; outer membrane protein
D YPA_2787 lipoprotein K06194 nlpD; lipoprotein NlpD
D YPA_2991 lipoprotein NlpI K05803 nlpI; lipoprotein NlpI
D YPA_1560 hypothetical protein K07275 ompW; outer membrane protein
D YPA_2854 hypothetical protein K07283 ydiY; putative salt-induced outer membrane protein
D YPA_1456 putative lipoprotein K07285 slp; outer membrane lipoprotein
D YPA_2655 putative lipoprotein K07286 yajG; uncharacterized lipoprotein
D YPA_0820 hypothetical protein K07289 asmA; AsmA protein
D YPA_3815 hypothetical protein K07290 yhjG; AsmA family protein
D YPA_2579 putative membrane protein K07340 ybbJ; inner membrane protein
D YPA_0794 hypothetical protein K02005 ABC.CD.TX; HlyD family secretion protein
D YPA_1948 putative membrane protein K11744 tqsA; AI-2 transport protein TqsA
D YPA_1589 osmotically inducible lipoprotein B precursor K04062 osmB; osmotically inducible lipoprotein OsmB
D YPA_0375 putative membrane protein K06143 creD; inner membrane protein
D YPA_2106 putative cytochrome c-type biogenesis protein K02197 ccmE; cytochrome c-type biogenesis protein CcmE
D YPA_2103 putative cytochrome c-type biogenesis protein K02200 ccmH; cytochrome c-type biogenesis protein CcmH
D YPA_2320 putative DNA-binding protein K15539 rodZ; cytoskeleton protein RodZ
D YPA_3697 putative membrane protein K21695 aaeX; protein AaeX
D YPA_3198 putative membrane protein K21908 hdeD; membrane protein HdeD
C 99994 Others
D YPA_4158 phosphate uptake regulator, PhoU K02039 phoU; phosphate transport system protein
D YPA_3985 tellurite resistance protein K05793 terB; tellurite resistance protein TerB
D YPA_3984 tellurium resistance protein K05794 terC; tellurite resistance protein TerC
D YPA_3936 putative cation tolerance protein K03926 cutA; periplasmic divalent cation tolerance protein
D YPA_1430 putative copper homeostasis protein K06201 cutC; copper homeostasis protein
D YPA_2963 phosphonates transport ATP-binding protein K05781 phnK; putative phosphonate transport system ATP-binding protein
D YPA_4085 ApaG protein K06195 apaG; ApaG protein
D YPA_0175 frataxin-like protein K06202 cyaY; iron-sulfur cluster assembly protein CyaY
D YPA_4000 hemin transport protein K07225 hmuS; putative hemin transport protein
D YPA_3996 heme utilization protein HuvX K07227 chuX; heme iron utilization protein
D YPA_2625 hypothetical protein K06039 ychN; uncharacterized protein involved in oxidation of intracellular sulfur
B
B 09194 Poorly characterized
C 99996 General function prediction only
D YPA_2073 colicin V production protein K03558 cvpA; membrane protein required for colicin V production
D YPA_0716 putative paraquat-inducible protein B K06192 pqiB; paraquat-inducible protein B
D YPA_1424 putative oxidoreductase K03810 mviM; virulence factor
D YPA_2765 putative lipoprotein K05811 yfiM; putative lipoprotein
D YPA_3853 osmotically inducible protein Y K04065 osmY; hyperosmotically inducible periplasmic protein
D YPA_1419 hypothetical protein K04477 ycdX; putative hydrolase
D YPA_2438 hypothetical protein K06866 grcA; autonomous glycyl radical cofactor
D YPA_2887 hypothetical protein K15724 erpA; iron-sulfur cluster insertion protein
D YPA_1749 FeS assembly scaffold SufA K05997 sufA; Fe-S cluster assembly protein SufA
D YPA_1748 Iron-regulated ABC transporter membrane component SufB K09014 sufB; Fe-S cluster assembly protein SufB
D YPA_1746 Iron-regulated ABC transporter permease protein SufD K09015 sufD; Fe-S cluster assembly protein SufD
D YPA_2236 putative membrane protein K07038 K07038; inner membrane protein
D YPA_1804 putative membrane protein K07038 K07038; inner membrane protein
D YPA_3514 tRNA-processing RNAse BN K07058 K07058; membrane protein
D YPA_3813 putative membrane protein K07058 K07058; membrane protein
D YPA_3933 putative membrane protein K07113 fxsA; UPF0716 protein FxsA
D YPA_1744 Cysteine desulfuration protein SufE K02426 sufE; cysteine desulfuration protein SufE
D YPA_0498 hypothetical protein K02426 sufE; cysteine desulfuration protein SufE
D YPA_1949 hypothetical protein K07146 K07146; UPF0176 protein
D YPA_1887 hypothetical protein K07153 hflD; high frequency lysogenization protein
D YPA_0822 putative ferric iron reductase K13255 fhuF; ferric iron reductase protein FhuF
D YPA_2112 hypothetical protein K03744 lemA; LemA protein
D YPA_3278 hypothetical protein K03745 slyX; SlyX protein
D YPA_3229 hypothetical protein K03747 smg; Smg protein
D YPA_4048 hypothetical protein K05805 creA; CreA protein
D YPA_0334 hypothetical protein K02742 sprT; SprT protein
D YPA_2074 putative membrane protein K03749 dedD; DedD protein
D YPA_3316 conserved hypothetical membrane protein K03112 damX; DamX protein
D YPA_0805 hypothetical protein K03748 sanA; SanA protein
D YPA_2077 putative membrane protein K03975 dedA; membrane-associated protein
D YPA_0715 putative paraquat-inducible protein A K03808 pqiA; paraquat-inducible protein A
D YPA_1819 putative membrane protein K03808 pqiA; paraquat-inducible protein A
D YPA_2022 putative membrane protein K05594 elaB; ElaB protein
D YPA_1696 putative membrane protein K08990 ycjF; putative membrane protein
D YPA_0206 putative membrane protein K08993 yhhL; putative membrane protein
D YPA_2527 putative membrane protein K08996 yagU; putative membrane protein
D YPA_1530 hypothetical protein K09858 K09858; SEC-C motif domain protein
D YPA_2635 putative lipoprotein K09914 K09914; putative lipoprotein
D YPA_0034 maltose operon periplasmic protein K05775 malM; maltose operon periplasmic protein
D YPA_0027 putative membrane protein K13256 psiE; protein PsiE
D YPA_2114 hypothetical protein K06193 phnA; protein PhnA
C 99997 Function unknown
D YPA_2805 hypothetical protein K06867 K06867; uncharacterized protein
D YPA_2440 putative phospholipase A accessory protein K06867 K06867; uncharacterized protein
D YPA_3358 enterotoxin-like protein K06867 K06867; uncharacterized protein
D YPA_0792 putative heme-binding protein K06871 K06871; uncharacterized protein
D YPA_2237 putative sulfatase modifier protein K06871 K06871; uncharacterized protein
D YPA_0429 putative regulatory protein K06871 K06871; uncharacterized protein
D YPA_2538 putative membrane protein K06887 K06887; uncharacterized protein
D YPA_2308 hypothetical protein K06887 K06887; uncharacterized protein
D YPA_1249 hypothetical protein K06887 K06887; uncharacterized protein
D YPA_2152 hypothetical protein K06887 K06887; uncharacterized protein
D YPA_0976 hypothetical protein K06887 K06887; uncharacterized protein
D YPA_0091 hypothetical protein K06889 K06889; uncharacterized protein
D YPA_1384 hypothetical protein K06889 K06889; uncharacterized protein
D YPA_1070 putative membrane protein K06890 K06890; uncharacterized protein
D YPA_1071 putative membrane protein K06890 K06890; uncharacterized protein
D YPA_1255 hypothetical protein K06903 W; Bacteriophage baseplate protein W
D YPA_1252 putative major tail sheath protein K06907 FI; Bacteriophage tail sheath protein
D YPA_1697 hypothetical protein K06918 K06918; uncharacterized protein
D YPA_MT0083 DNA-binding protein K06921 K06921; uncharacterized protein
D YPA_0735 hypothetical protein K06929 K06929; uncharacterized protein
D YPA_1722 hypothetical protein K06938 K06938; uncharacterized protein
D YPA_1002 hypothetical protein K06940 K06940; uncharacterized protein
D YPA_1805 putative transport protein K06956 K06956; uncharacterized protein
D YPA_3124 hypothetical protein K07000 K07000; uncharacterized protein
D YPA_1906 hypothetical protein K07000 K07000; uncharacterized protein
D YPA_0978 putative membrane protein K07014 K07014; uncharacterized protein
D YPA_3292 hypothetical protein K07019 K07019; uncharacterized protein
D YPA_4061 putative membrane protein K07034 K07034; uncharacterized protein
D YPA_2249 putative membrane protein K07054 K07054; uncharacterized protein
D YPA_3280 hypothetical protein K07070 K07070; uncharacterized protein
D YPA_2064 hypothetical protein K07071 K07071; uncharacterized protein
D YPA_2090 putative membrane protein K07090 K07090; uncharacterized protein
D YPA_2062 hypothetical protein K07095 K07095; uncharacterized protein
D YPA_0078 hypothetical protein K07109 K07109; uncharacterized protein
D YPA_4008 putative integral membrane protein K07112 K07112; uncharacterized protein
D YPA_3754 hypothetical protein K07121 K07121; uncharacterized protein
D YPA_1371 hypothetical protein K07126 K07126; uncharacterized protein
D YPA_MT0028 hypothetical protein K07128 K07128; uncharacterized protein
D YPA_MT0030 ABC transporter ATP-binding protein K07128 K07128; uncharacterized protein
D YPA_1433 putative membrane protein K07136 K07136; uncharacterized protein
D YPA_3747 hypothetical protein K07139 K07139; uncharacterized protein
D YPA_0712 putative iron-sulfur binding protein K07140 K07140; MOSC domain-containing protein
D YPA_0801 hypothetical protein K07148 K07148; uncharacterized protein
D YPA_4146 Protein of unknown function DUF37 K08998 K08998; uncharacterized protein
D YPA_0321 hypothetical protein K09131 K09131; uncharacterized protein
D YPA_2499 hypothetical protein K09158 K09158; uncharacterized protein
D YPA_1465 hypothetical protein K09160 K09160; uncharacterized protein
D YPA_2053 hypothetical protein K09161 K09161; uncharacterized protein
D YPA_2221 hypothetical protein K09768 K09768; uncharacterized protein
D YPA_1551 hypothetical protein K09780 K09780; uncharacterized protein
D YPA_1510 hypothetical protein K09786 K09786; uncharacterized protein
D YPA_2618 hypothetical protein K09790 K09790; uncharacterized protein
D YPA_0693 hypothetical protein K09791 K09791; uncharacterized protein
D YPA_3480 hypothetical protein K09798 K09798; uncharacterized protein
D YPA_3481 conserved hypothetical protein K09798 K09798; uncharacterized protein
D YPA_0581 hypothetical protein K09801 K09801; uncharacterized protein
D YPA_0855 hypothetical protein K09802 K09802; uncharacterized protein
D YPA_1257 conserved hypothetical protein K09803 K09803; uncharacterized protein
D YPA_0350 hypothetical protein K09807 K09807; uncharacterized protein
D YPA_0652 putative virulence factor K09824 virK; uncharacterized protein
D YPA_2723 hypothetical protein K05952 K05952; uncharacterized protein
D YPA_0717 putative lipoprotein protein K09857 K09857; uncharacterized protein
D YPA_4054 hypothetical protein K09861 K09861; uncharacterized protein
D YPA_2933 hypothetical protein K09862 K09862; uncharacterized protein
D YPA_3605 hypothetical protein K09891 K09891; uncharacterized protein
D YPA_3522 hypothetical protein K09894 K09894; uncharacterized protein
D YPA_0356 hypothetical protein K09895 K09895; uncharacterized protein
D YPA_3528 hypothetical protein K09896 K09896; uncharacterized protein
D YPA_0119 hypothetical protein K09897 K09897; uncharacterized protein
D YPA_3293 hypothetical protein K09898 K09898; uncharacterized protein
D YPA_2054 hypothetical protein K09899 K09899; uncharacterized protein
D YPA_1545 hypothetical protein K09901 K09901; uncharacterized protein
D YPA_1462 hypothetical protein K09902 K09902; uncharacterized protein
D YPA_0979 hypothetical protein K09904 K09904; uncharacterized protein
D YPA_1429 hypothetical protein K09907 K09907; uncharacterized protein
D YPA_3738 putative membrane protein K09908 K09908; uncharacterized protein
D YPA_0734 hypothetical protein K09909 K09909; uncharacterized protein
D YPA_2916 hypothetical protein K09910 K09910; uncharacterized protein
D YPA_0725 hypothetical protein K09911 K09911; uncharacterized protein
D YPA_0871 hypothetical protein K09912 K09912; uncharacterized protein
D YPA_1516 hypothetical protein K09916 K09916; uncharacterized protein
D YPA_1146 hypothetical protein K09917 K09917; uncharacterized protein
D YPA_1149 hypothetical protein K09918 K09918; uncharacterized protein
D YPA_3127 hypothetical protein K09920 K09920; uncharacterized protein
D YPA_0178 hypothetical protein K09921 K09921; uncharacterized protein
D YPA_0314 hypothetical protein K09923 K09923; uncharacterized protein
D YPA_3907 putative membrane protein K09937 K09937; uncharacterized protein
D YPA_2293 hypothetical protein K09946 K09946; uncharacterized protein
D YPA_2177 hypothetical protein K09954 K09954; uncharacterized protein
D YPA_2175 hypothetical protein K09962 K09962; uncharacterized protein
D YPA_2582 hypothetical protein K09973 K09973; uncharacterized protein
D YPA_1357 hypothetical protein K09975 K09975; uncharacterized protein
D YPA_1675 hypothetical protein K09978 K09978; uncharacterized protein
D YPA_2969 hypothetical protein K09979 K09979; uncharacterized protein
D YPA_1550 conserved hypothetical protein K09981 K09981; uncharacterized protein
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: May 11, 2024