+E Transcription factors KO
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Transcription Factors - Yersinia pseudotuberculosis PB1/+ (serotype 1B)
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D YPTS_1903 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D YPTS_2247 transcriptional regulator, AraC family K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein
D YPTS_0412 transcriptional regulator, AraC family K02854 rhaR; AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR
D YPTS_0411 transcriptional regulator, AraC family K02855 rhaS; AraC family transcriptional regulator, L-rhamnose operon regulatory protein RhaS
D YPTS_3044 transcriptional regulator, AraC family K03490 chbR; AraC family transcriptional regulator, dual regulator of chb operon
D YPTS_1714 transcriptional regulator, AraC family K05372 ybtA; AraC family transcriptional regulator
D YPTS_0621 transcriptional regulator, AraC family K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D YPTS_0069 transcriptional regulator, AraC family K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
C LysR family
D YPTS_3138 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D YPTS_0153 transcriptional regulator, LysR family K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D YPTS_0263 transcriptional regulator, LysR family K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D YPTS_0638 transcriptional regulator, LysR family K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D YPTS_0126 transcriptional regulator, LysR family K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D YPTS_3323 transcriptional regulator, LysR family K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D YPTS_0700 transcriptional regulator, LysR family K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon
D YPTS_2211 transcriptional regulator, LysR family K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D YPTS_2628 transcriptional regulator, LysR family K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA
D YPTS_0084 transcriptional regulator, LysR family K16516 galR; LysR family transcriptional regulator, regulator for genes of the gallate degradation pathway
D YPTS_3735 transcriptional regulator, LysR family K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon
D YPTS_0140 transcriptional regulator, LysR family K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
C DeoR family
D YPTS_1450 transcriptional regulator, DeoR family K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor
D YPTS_3975 transcriptional regulator, DeoR family K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D YPTS_3196 transcriptional regulator, DeoR family K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor
D YPTS_0838 transcriptional regulator, DeoR family K02430 fucR; DeoR family transcriptional regulator, L-fucose operon activator
C LacI family
D YPTS_3216 transcriptional regulator, LacI family K27069 lacI; LacI family transcriptional regulator, lactose operon repressor
D YPTS_3406 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D YPTS_1729 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D YPTS_4104 transcriptional regulator, AraC family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D YPTS_2629 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D YPTS_2279 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D YPTS_3626 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D YPTS_3166 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D YPTS_0102 transcriptional regulator, LacI family K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D YPTS_0704 transcriptional regulator, LacI family K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D YPTS_3721 transcriptional regulator, LacI family K03485 treR; LacI family transcriptional regulator, trehalose operon repressor
D YPTS_2374 transcriptional regulator, LacI family K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
D YPTS_3997 transcriptional regulator, LacI family K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D YPTS_2664 transcriptional regulator, LacI family K06146 idnR; LacI family transcriptional regulator, gluconate utilization system Gnt-II transcriptional activator
C GntR family
D YPTS_0547 transcriptional regulator, GntR family K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein
D YPTS_2022 transcriptional regulator, histidine utilization repressor, GntR family K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D YPTS_1958 transcriptional regulator, GntR family K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D YPTS_2254 transcriptional regulator, GntR family K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D YPTS_2134 fatty acid metabolism transcriptional regulator FadR K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D YPTS_0742 GntR domain protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D YPTS_1405 GntR domain protein K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor
D YPTS_3665 regulatory protein GntR HTH K19775 exuR; GntR family transcriptional regulator, hexuronate regulon transcriptional repressor
D YPTS_2917 transcriptional regulator, GntR family with aminotransferase domain protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
C TetR/AcrR family
D YPTS_1277 transcriptional regulator, TetR family K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D YPTS_1027 transcriptional regulator, TetR family K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D YPTS_0045 transcriptional regulator, TetR family K05501 slmA; TetR/AcrR family transcriptional regulator
D YPTS_2365 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D YPTS_0129 transcriptional regulator, TetR family K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
D YPTS_1293 transcriptional regulator, TetR family K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
C Lrp/AsnC family
D YPTS_4169 transcriptional regulator, AsnC family K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D YPTS_1500 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D YPTS_2500 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D YPTS_1011 transcriptional regulator, AsnC family K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
C LuxR family
D YPTS_2593 transcriptional regulator, LuxR family K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR
D YPTS_3395 transcriptional regulator, LuxR family K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR
D YPTS_3972 ATP-dependent transcriptional regulator, MalT-like, LuxR family K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
C MarR family
D YPTS_0899 transcriptional regulator, MarR family K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB
C MerR family
D YPTS_1071 transcriptional regulator, MerR family K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D YPTS_3863 transcriptional regulator, MerR family K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA
C Fur family
D YPTS_1182 ferric uptake regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D YPTS_0394 ferric uptake regulator, Fur family K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
C IclR family
D YPTS_3840 transcriptional regulator, IclR family K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D YPTS_2441 transcriptional regulator, IclR family K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
C CRP/FNR family
D YPTS_3921 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D YPTS_2300 transcriptional regulator, Crp/Fnr family K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
C Rrf2 family
D YPTS_2968 transcriptional regulator, BadM/Rrf2 family K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D YPTS_0460 transcriptional regulator, BadM/Rrf2 family K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
C ArsR family
D YPTS_0820 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
C XRE family
C PadR family
C Other families
D YPTS_2108 transcriptional regulator, RpiR family K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D YPTS_0291 bifunctional BirA, biotin operon repressor/biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D YPTS_3765 transcriptional regulator, Fis family K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D YPTS_0618 Trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor
D YPTS_1121 putative transcriptional regulator, Nlp K07724 ner; Ner family transcriptional regulator
D YPTS_0491 putative transcriptional regulator, Nlp K07724 ner; Ner family transcriptional regulator
D YPTS_0692 extracellular solute-binding protein family 5 K11925 sgrR; SgrR family transcriptional regulator
D YPTS_0610 transcriptional regulator, XRE family K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D YPTS_3247 transcriptional regulator, XRE family K13655 mqsA; HTH-type transcriptional regulator / antitoxin MqsA
D YPTS_2270 GAF modulated sigma54 specific transcriptional regulator, Fis family K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D YPTS_2267 sigma54 specific transcriptional regulator, Fis family K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D YPTS_4033 transcriptional regulator, CdaR K02647 cdaR; carbohydrate diacid regulator
D YPTS_1253 transcriptional regulator, ModE family K02019 modE; molybdate transport system regulatory protein
B Ribbon-helix-helix
C CopG family
C Other families
D YPTS_0107 methionine repressor, MetJ K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
D YPTS_1854 delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
C Others
D YPTS_0997 BolA family protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D YPTS_4257 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D YPTS_0279 transcriptional acivator RfaH K05785 rfaH; transcriptional antiterminator RfaH
D YPTS_0489 arginine repressor, ArgR K03402 argR; transcriptional regulator of arginine metabolism
D YPTS_1175 ROK family protein K02565 nagC; N-acetylglucosamine repressor
D YPTS_2261 ROK family protein K15545 mlc; transcriptional regulator of PTS gene
D YPTS_4140 mannitol repressor, MtlR K02562 mtlR; mannitol operon repressor
D YPTS_2339 transcriptional regulator, TyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D YPTS_2890 glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor
D YPTS_2348 sigma54 specific transcriptional regulator, Fis family K03974 pspF; psp operon transcriptional activator
D YPTS_2345 phage shock protein C, PspC K03973 pspC; phage shock protein C
D YPTS_0577 transcriptional regulator, DeoR family K11531 lsrR; lsr operon transcriptional repressor
D YPTS_3724 GreA/GreB family elongation factor K06140 rnk; regulator of nucleoside diphosphate kinase
D YPTS_1706 phage transcriptional regulator, AlpA K07733 alpA; prophage regulatory protein
D YPTS_1206 phage transcriptional regulator, AlpA K07733 alpA; prophage regulatory protein
D YPTS_3243 phage transcriptional regulator, AlpA K07733 alpA; prophage regulatory protein
D YPTS_3341 protein of unknown function DUF179 K07735 algH; putative transcriptional regulator
D YPTS_0765 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor
D YPTS_0974 ATP-cone domain protein K07738 nrdR; transcriptional repressor NrdR
D YPTS_0945 transcriptional regulator Crl K11926 crl; sigma factor-binding protein Crl
D YPTS_0706 MraZ protein K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 8, 2024
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Classification taken and modified from TRANSFAC 7.0