+E Transcription factors KO #

  Transcription Factors - Yersinia pestis CO92 (biovar Orientalis)

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D YPO2258 araC; arabinose operon regulatory protein K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein D YPO0333 b3906; L-rhamnose operon transcriptional activator K02854 rhaR; AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR D YPO0332 b3905; L-rhamnose operon regulatory protein K02855 rhaS; AraC family transcriptional regulator, L-rhamnose operon regulatory protein RhaS D YPO2681 celD; cel operon repressor K03490 chbR; AraC family transcriptional regulator, dual regulator of chb operon D YPO1912 ybtA; transcriptional regulator YbtA K05372 ybtA; AraC family transcriptional regulator D YPO0456 rob; putative right origin-binding protein K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator D YPCD1.49 YPCD1.49; putative thermoregulatory protein K20968 exsA; AraC family transcriptional regulator, exoenzyme S synthesis regulatory protein ExsA D YPO0072 bifunctional regulatory protein/DNA repair protein K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] C LysR family D YPO1029 gcvA; glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D YPO3889 ilvY; LysR-family transcriptional regulatory protein K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC D YPO3789 metR; lysR-family transcriptional regulatory protein K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D YPO0471 antO; transcriptional activator protein NhaR K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D YPO3915 oxyR; oxidative stress transcriptional regulatory protein K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D YPO0916 iciA; chromosome initiation inhibitor K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D YPO0535 leuO; LysR-family transcriptional regulator LeuO K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon D YPO2219 cysB; cys regulon transcriptional activator K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D YPO2497 putativeLlysR-family transcriptional regulatory protein K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA D YPO0084 possible transcriptional regulator K16516 galR; LysR family transcriptional regulator, regulator for genes of the gallate degradation pathway D YPO3683 probable lysR-family transcriptional regulatory protein K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon D YPO3904 LysR-family transcriptional regulatory protein K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator C DeoR family D YPO1322 deoR; deoxyribose operon repressor K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor D YPO0120 glpR; glycerol-3-phosphate repressor protein K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D YPO0831 DeoR-family regulatory protein K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor D YPO3327 fucR; putative deoR-family regulatory protein K02430 fucR; DeoR family transcriptional regulator, L-fucose operon activator C LacI family D YPO0849 lacI; lactose operon repressor K27069 lacI; LacI family transcriptional regulator, lactose operon repressor D YPO2283 putative LacI-family transcriptional regulatory protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D YPO4034 putative AraC-family transcriptional regulatory protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D YPO0758 LacI-family regulatory protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D YPO0795 galR; galactose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor D YPO0611 LacI-family regulatory protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D YPO2498 putative LacI-family transcriptional regulatory protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D YPO0108 cytR; transcriptional repressor K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG D YPO0543 cra; putative fructose repressor K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor D YPO3698 treR; trehalose operon repressor K03485 treR; LacI family transcriptional regulator, trehalose operon repressor D YPO2387 purR; purine nucleotide synthesis repressor K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor D YPO3955 gntR; gluconate utilization system Gnt-I transcriptional repressor K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor D YPO2537 putative LacI-family transcriptional regulatory protein K06146 idnR; LacI family transcriptional regulator, gluconate utilization system Gnt-II transcriptional activator C GntR family D YPO3456 phnF; probable gntR-family transcriptional regulatory protein K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein D YPO1973 hutC; putative GntR-family transcriptional regulatory protein K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D YPO1890 GntR-family putative transcriptional regulatory protein K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D YPO2144 fadR; fatty acid metabolism regulatory protein K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA D YPO3420 aceC; pyruvate dehydrogenase complex repressor K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D YPO1279 putative transcriptional regulatory protein K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor D YPO0576 exuR; exu regulon transcriptional regulator K19775 exuR; GntR family transcriptional regulator, hexuronate regulon transcriptional repressor D YPO2845 putative GntR-family regulatory protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase C TetR/AcrR family D YPO1167 betI; TetR-family regulatory protein K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes D YPO3131 acrR; putative tetR-family transcriptional regulatory protein K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor D YPO0046 ttk; TetR-family regulatory protein K05501 slmA; TetR/AcrR family transcriptional regulator D YPO2378 TetR-family transcriptional regulatory protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D YPO3913 TetR-family transcriptional regulatory protein K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator C Lrp/AsnC family D YPO0002 asnC; regulatory protein K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D YPO1375 alsB; leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D YPO1651 AsnC-family transcriptional regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D YPO3146 probable AsnC-family regulatory protein K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator C LuxR family D YPO2457 ypeR; quorum-sensing transcriptional activator YpeR K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR D YPO0985 yspR; quorum-sensing transcriptional regulator K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR D YPO0123 malT; maltose regulon positive regulatory protein K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein C MarR family D YPO2374 slyA; MarR-family transcriptional regulatory protein K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D YPO3266 emrR; MarR-family transcriptional regulatory protein K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB C MerR family D YPO3085 cueR; putative regulatory protein K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D YPO0236 MerR-family transcriptional regulator K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA C Fur family D YPO2634 fur; ferric uptake regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D YPO0315 putative regulatory protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator C IclR family D YPO1714 kdgR; IclR-family transcriptional regulatory protein K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor C CRP/FNR family D YPO0175 cap; cAMP-regulatory protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D YPO2300 fnr; fumarate and nitrate reduction regulatory protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein C Rrf2 family D YPO2897 conserved hypothetical protein K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D YPO0379 conserved hypothetical protein K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor C ArsR family D YPO3346 arsR; arsenical resistance operon repressor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor C XRE family C PadR family C Other families D YPO2065 hexR; hex regulon repressor K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D YPO3759 bioR; bifunctional protein BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D YPO3654 fiS; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D YPO0453 rtrY; putative Trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor D YPO2785 nlp; putative DNA-binding protein K07724 ner; Ner family transcriptional regulator D YPO0524 conserved hypothetical protein K11925 sgrR; SgrR family transcriptional regulator D YPO0444 b4390; transcriptional regulator NadR K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22] D YPO0881 conserved hypothetical protein K13655 mqsA; HTH-type transcriptional regulator / antitoxin MqsA D YPO3978 putative regulatory protein K02647 cdaR; carbohydrate diacid regulator D YPO1143 modE; molybdenum transport protein ModE K02019 modE; molybdate transport system regulatory protein B Ribbon-helix-helix C CopG family C Other families D YPO0114 metJ; transcriptional repressor protein K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor D YPO1851 poaA; bifunctional PutA protein [includes: proline dehydrogenase and delta-1-pyrroline-5-carboxylate K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] B Other transcription factors C BglG family C Others D YPO3160 bolA; BolA protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D YPMT1.59c YPMT1.59c; putative DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D YPMT1.67c YPMT1.67c; putative partitioning protein B K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D YPCD1.12c YPCD1.12c; putative plasmid partitioning control protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D YPO3770 hlyT; putative regulatory protein K05785 rfaH; transcriptional antiterminator RfaH D YPO3517 argR; arginine repressor K03402 argR; transcriptional regulator of arginine metabolism D YPO2625 nagC; putative N-acetylglucosamine regulatory protein K02565 nagC; N-acetylglucosamine repressor D YPO2268 mlc; putative ROK family transcriptional regulatory protein K15545 mlc; transcriptional regulator of PTS gene D YPO4066 mtlR; mannitol operon repressor K02562 mtlR; mannitol operon repressor D YPO2344 tyrR; transcriptional regulatory protein K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport D YPO3063 gcvR; glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor D YPO2352 pspF; psp operon transcriptional activator K03974 pspF; psp operon transcriptional activator D YPO2349 pspC; phage shock protein C K03973 pspC; phage shock protein C D YPO3695 rnk; regulator of nucleoside diphosphate kinase K06140 rnk; regulator of nucleoside diphosphate kinase D YPO1904 putative transcriptional regulator K07733 alpA; prophage regulatory protein D YPO0878 putative regulatory protein K07733 alpA; prophage regulatory protein D YPO0936 conserved hypothetical protein K07735 algH; putative transcriptional regulator D YPO3397 dksA; DnaK suppressor protein homologue K06204 dksA; RNA polymerase-binding transcription factor D YPO3184 conserved hypothetical protein K07738 nrdR; transcriptional repressor NrdR D YPO3223 crl; curlin genes regulatory protein K11926 crl; sigma factor-binding protein Crl D YPO0546 conserved hypothetical protein K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 8, 2024 #
Classification taken and modified from TRANSFAC 7.0