+E Transcription factors KO #

  Transcription Factors - Yersinia pestis Nepal516 (biovar Antiqua)

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D YPN_1727 transcriptional regulator, AraC family K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein D YPN_3337 transcriptional regulator, AraC family K02854 rhaR; AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR D YPN_3338 transcriptional regulator, AraC family K02855 rhaS; AraC family transcriptional regulator, L-rhamnose operon regulatory protein RhaS D YPN_1167 cel operon repressor K03490 chbR; AraC family transcriptional regulator, dual regulator of chb operon D YPN_0327 transcriptional regulator, AraC family K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator D YPN_3779 Transcriptional regulator Ada / DNA-O6-methylguanine--protein-cysteine S-methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] C LysR family D YPN_2973 glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D YPN_0076 LysR-family transcriptional regulatory protein K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC D YPN_0175 lysR-family transcriptional regulatory protein K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D YPN_0344 transcriptional activator protein NhaR K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D YPN_0052 oxidative stress transcriptional regulatory protein K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D YPN_3115 chromosome initiation inhibitor K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D YPN_0405 LysR-family transcriptional regulator LeuO K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon D YPN_1687 cys regulon transcriptional activator K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D YPN_2091 putativeLlysR-family transcriptional regulatory protein K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA D YPN_3764 transcriptional regulator K16516 galR; LysR family transcriptional regulator, regulator for genes of the gallate degradation pathway D YPN_3489 lysR-family transcriptional regulatory protein K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon D YPN_0063 LysR-family transcriptional regulatory protein K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator C DeoR family D YPN_2657 deoxyribose operon repressor K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor D YPN_3948 glycerol-3-phosphate repressor protein K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D YPN_3033 DeoR-family regulatory protein K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor D YPN_0766 deoR-family regulatory protein K02430 fucR; DeoR family transcriptional regulator, L-fucose operon activator C LacI family D YPN_3051 transcriptional regulator, LacI family K27069 lacI; LacI family transcriptional regulator, lactose operon repressor D YPN_2092 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D YPN_1743 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D YPN_3681 transcriptional regulator, AraC family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D YPN_2395 hypothetical protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D YPN_0474 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D YPN_2999 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D YPN_3197 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D YPN_3745 transcriptional regulator, LacI family K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG D YPN_0410 transcriptional regulator, LacI family K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor D YPN_3474 transcriptional regulator, LacI family K03485 treR; LacI family transcriptional regulator, trehalose operon repressor D YPN_1841 transcriptional regulator, LacI family K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor D YPN_3604 transcriptional regulator, LacI family K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor D YPN_2132 transcriptional regulator, LacI family K06146 idnR; LacI family transcriptional regulator, gluconate utilization system Gnt-II transcriptional activator C GntR family D YPN_0632 transcriptional regulator, GntR family K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein D YPN_1453 transcriptional regulator, GntR family K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D YPN_2235 transcriptional regulator, GntR family K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D YPN_1612 transcriptional regulator, GntR family K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA D YPN_0668 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D YPN_2697 transcriptional regulator, GntR family K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor D YPN_0445 transcriptional regulator, GntR family K19775 exuR; GntR family transcriptional regulator, hexuronate regulon transcriptional repressor D YPN_1293 transcriptional regulator, GntR family K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase C TetR/AcrR family D YPN_2834 TetR-family regulatory protein K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes D YPN_0959 tetR-family transcriptional regulatory protein K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor D YPN_3804 cell division inhibitor SlmA K05501 slmA; TetR/AcrR family transcriptional regulator D YPN_1833 TetR-family transcriptional regulatory protein K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D YPN_0054 TetR-family transcriptional regulatory protein K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator D YPN_2815 transcriptional regulator, TetR family K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity C Lrp/AsnC family D YPN_0002 regulatory protein K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D YPN_2605 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D YPN_1979 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D YPN_0944 transcriptional regulator, AsnC family K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator C LuxR family D YPN_2053 quorum-sensing transcriptional activator YpeR K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR D YPN_3183 quorum-sensing transcriptional regulator K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR D YPN_3945 maltose regulon positive regulatory protein K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein C MarR family D YPN_1831 MarR-family transcriptional regulatory protein K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D YPN_0830 MarR-family transcriptional regulatory protein K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB C MerR family D YPN_1004 regulatory protein K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D YPN_3833 MerR-family transcriptional regulator K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA C Fur family D YPN_1120 ferric uptake regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D YPN_3354 zinc uptake regulator, Fur family K09823 zur; Fur family transcriptional regulator, zinc uptake regulator C IclR family D YPN_0017 repressor of aceBA operon K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D YPN_1916 IclR-family transcriptional regulatory protein K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor C CRP/FNR family D YPN_3892 cAMP-regulatory protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D YPN_1761 fumarate and nitrate reduction regulatory protein K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein C Rrf2 family D YPN_1240 transcriptional regulator, BadM/Rrf2 family K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D YPN_3292 transcriptional regulator, BadM/Rrf2 family K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor C ArsR family D YPN_0748 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor C XRE family C PadR family C Other families D YPN_1542 hex regulon repressor K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D YPN_0206 bifunctional protein BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D YPN_3518 DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D YPN_0324 Trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor D YPN_3259 DNA-binding protein K07724 ner; Ner family transcriptional regulator D YPN_1054 DNA-binding protein K07724 ner; Ner family transcriptional regulator D YPN_0398 hypothetical protein K11925 sgrR; SgrR family transcriptional regulator D YPN_0315 transcriptional regulator NadR K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22] D YPN_3080 hypothetical protein K13655 mqsA; HTH-type transcriptional regulator / antitoxin MqsA D YPN_3627 transcriptional regulator, CdaR family K02647 cdaR; carbohydrate diacid regulator D YPN_2858 molybdenum transport protein ModE K02019 modE; molybdate transport system regulatory protein D YPN_3675 conserved hypothetical protein K07726 K07726; putative transcriptional regulator B Ribbon-helix-helix C CopG family C Other families D YPN_3741 transcriptional repressor protein K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor D YPN_2272 L-proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] B Other transcription factors C BglG family C Others D YPN_0931 transcriptional regulator BolA K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D YPN_MT0094 DNA-binding protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D YPN_MT0086 partitioning protein B K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D YPN_0194 regulatory protein K05785 rfaH; transcriptional antiterminator RfaH D YPN_3261 transcriptional regulator, ArgR family K03402 argR; transcriptional regulator of arginine metabolism D YPN_1111 N-acetylglucosamine regulatory protein K02565 nagC; N-acetylglucosamine repressor D YPN_1740 ROK family transcriptional regulatory protein K15545 mlc; transcriptional regulator of PTS gene D YPN_3713 mannitol repressor, MtlR K02562 mtlR; mannitol operon repressor D YPN_1804 transcriptional regulatory protein K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport D YPN_1322 glycine cleavage system transcriptional repressor K03567 gcvR; glycine cleavage system transcriptional repressor D YPN_1813 psp operon transcriptional activator K03974 pspF; psp operon transcriptional activator D YPN_1810 phage shock protein C K03973 pspC; phage shock protein C D YPN_0285 transcriptional repressor K11531 lsrR; lsr operon transcriptional repressor D YPN_3477 regulator of nucleoside diphosphate kinase K06140 rnk; regulator of nucleoside diphosphate kinase D YPN_3077 regulatory protein K07733 alpA; prophage regulatory protein D YPN_2905 transcriptional regulator K07733 alpA; prophage regulatory protein D YPN_3133 hypothetical protein K07735 algH; putative transcriptional regulator D YPN_0693 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor D YPN_0904 hypothetical protein K07738 nrdR; transcriptional repressor NrdR D YPN_0870 curlin genes regulatory protein K11926 crl; sigma factor-binding protein Crl D YPN_0412 hypothetical protein K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 8, 2024 #
Classification taken and modified from TRANSFAC 7.0