+D GENES KO
#
KEGG Orthology (KO) - Yersinia pseudotuberculosis YPIII (serotype O:3)
%
!
A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:ypy00010]
D YPK_1444 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D YPK_0373 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D YPK_4126 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D YPK_3766 Inositol phosphatase/fructose-16-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D YPK_4114 fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D YPK_0853 fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D YPK_0129 ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D YPK_4118 Triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D YPK_2096 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D YPK_0852 Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D YPK_2948 phosphoglycerate mutase 1 family K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D YPK_3610 Phosphoglycerate mutase K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D YPK_4141 phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D YPK_3446 Phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D YPK_1855 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D YPK_2136 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D YPK_1843 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D YPK_3491 2-oxo-acid dehydrogenase E1 subunit, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D YPK_3490 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D YPK_3489 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPK_4081 pyridine nucleotide-disulphide oxidoreductase dimerisation region K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPK_1913 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D YPK_2571 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D YPK_2072 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D YPK_1974 Aldehyde Dehydrogenase K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-]
D YPK_3921 acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D YPK_2946 galactose mutarotase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D YPK_4187 HAD-superfamily hydrolase, subfamily IA, variant 3 K20866 yihX; glucose-1-phosphatase [EC:3.1.3.10]
D YPK_1152 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D YPK_2097 Aldose 1-epimerase K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15]
D YPK_0174 Phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D YPK_0241 glycoside hydrolase family 4 K01222 E3.2.1.86A; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D YPK_2805 glycoside hydrolase family 1 K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D YPK_1426 PTS system, glucose subfamily, IIA subunit K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D YPK_1694 PTS system, glucose-specific IIBC subunit K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199]
C 00020 Citrate cycle (TCA cycle) [PATH:ypy00020]
D YPK_2973 citrate synthase I K01647 CS; citrate synthase [EC:2.3.3.1]
D YPK_2030 aconitate hydratase 1 K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D YPK_3487 aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D YPK_1723 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D YPK_2968 2-oxoglutarate dehydrogenase, E1 subunit K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D YPK_2967 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D YPK_3489 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPK_4081 pyridine nucleotide-disulphide oxidoreductase dimerisation region K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPK_2965 succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D YPK_2966 succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D YPK_2970 succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D YPK_2969 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D YPK_2972 succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D YPK_2971 succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D YPK_3813 fumarate reductase, flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D YPK_3814 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D YPK_3815 fumarate reductase subunit C K00246 frdC; succinate dehydrogenase subunit C
D YPK_3816 fumarate reductase D subunit K00247 frdD; succinate dehydrogenase subunit D
D YPK_3404 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D YPK_1985 fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D YPK_3761 malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D YPK_0174 Phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D YPK_3491 2-oxo-acid dehydrogenase E1 subunit, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D YPK_3490 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D YPK_1913 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
C 00030 Pentose phosphate pathway [PATH:ypy00030]
D YPK_0373 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D YPK_2134 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D YPK_2933 6-phosphogluconolactonase K07404 pgl; 6-phosphogluconolactonase [EC:3.1.1.31]
D YPK_2535 6-phosphogluconate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D YPK_0229 Ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D YPK_3382 Transketolase domain protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D YPK_3383 Transketolase domain protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D YPK_0850 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D YPK_3599 transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D YPK_0858 ribose 5-phosphate isomerase K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D YPK_2769 ribose 5-phosphate isomerase K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D YPK_3422 sugar-phosphate isomerase, RpiB/LacA/LacB family K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D YPK_3627 deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D YPK_2737 deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D YPK_0418 deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D YPK_4209 ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15]
D YPK_0417 PfkB domain protein K00852 rbsK; ribokinase [EC:2.7.1.15]
D YPK_3625 phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D YPK_1152 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D YPK_3701 phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN K05774 phnN; ribose 1,5-bisphosphokinase [EC:2.7.4.23]
D YPK_2184 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D YPK_1582 6-phosphogluconate dehydratase K01690 edd; phosphogluconate dehydratase [EC:4.2.1.12]
D YPK_2132 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D YPK_0017 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D YPK_0136 carbohydrate kinase, thermoresistant glucokinase family K00851 idnK; gluconokinase [EC:2.7.1.12]
D YPK_1575 carbohydrate kinase, thermoresistant glucokinase family K00851 idnK; gluconokinase [EC:2.7.1.12]
D YPK_0101 PfkB domain protein K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]
D YPK_0853 fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D YPK_0129 ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D YPK_3766 Inositol phosphatase/fructose-16-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D YPK_4114 fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D YPK_4126 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C 00040 Pentose and glucuronate interconversions [PATH:ypy00040]
D YPK_3639 Pectinesterase K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11]
D YPK_0096 Pectate lyase K01728 pel; pectate lyase [EC:4.2.2.2]
D YPK_1802 Pectate disaccharide-lyase K01731 pelW; pectate disaccharide-lyase [EC:4.2.2.9]
D YPK_1792 Oligogalacturonide lyase K01730 ogl; oligogalacturonide lyase [EC:4.2.2.6]
D YPK_1805 Cupin 2 conserved barrel domain protein K26933 kdgF; unsaturated pyranuronate lyase [EC:4.2.99.25]
D YPK_1804 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase K01815 kduI; 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [EC:5.3.1.17]
D YPK_1803 2-deoxy-D-gluconate 3-dehydrogenase K00065 kduD; 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase [EC:1.1.1.127]
D YPK_0987 2-deoxy-D-gluconate 3-dehydrogenase K00065 kduD; 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase [EC:1.1.1.127]
D YPK_0554 Glucuronate isomerase K01812 uxaC; glucuronate isomerase [EC:5.3.1.12]
D YPK_0555 Mannitol dehydrogenase domain K00041 uxaB; tagaturonate reductase [EC:1.1.1.58]
D YPK_0556 Altronate dehydratase K01685 uxaA; altronate hydrolase [EC:4.2.1.7]
D YPK_2778 mannonate dehydratase K01686 uxuA; mannonate dehydratase [EC:4.2.1.8]
D YPK_2779 Mannitol dehydrogenase domain K00040 uxuB; fructuronate reductase [EC:1.1.1.57]
D YPK_2077 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D YPK_2536 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YPK_2537 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YPK_3403 carbohydrate kinase FGGY K00880 lyxK; L-xylulokinase [EC:2.7.1.53]
D YPK_3402 hexulose-6-phosphate isomerase K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22]
D YPK_3395 L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D YPK_2021 L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D YPK_0229 Ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D YPK_2001 L-arabinose isomerase K01804 araA; L-arabinose isomerase [EC:5.3.1.4]
D YPK_2000 L-ribulokinase K00853 araB; L-ribulokinase [EC:2.7.1.16]
D YPK_2770 xylulokinase K00854 xylB; xylulokinase [EC:2.7.1.17]
D YPK_0055 xylulokinase K00854 xylB; xylulokinase [EC:2.7.1.17]
D YPK_0056 xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
D YPK_3845 rhamnulokinase K00848 rhaB; rhamnulokinase [EC:2.7.1.5]
D YPK_3847 rhamnulose-1-phosphate aldolase K01629 rhaD; rhamnulose-1-phosphate aldolase [EC:4.1.2.19]
D YPK_1922 Mannitol dehydrogenase domain K00007 dalD; D-arabinitol 4-dehydrogenase [EC:1.1.1.11]
D YPK_0128 protein of unknown function DUF1498 K09988 lyxA; D-lyxose ketol-isomerase [EC:5.3.1.15]
D YPK_0435 FGGY-family pentulose kinase K00875 rbtK; D-ribulokinase [EC:2.7.1.47]
C 00051 Fructose and mannose metabolism [PATH:ypy00051]
D YPK_3279 ROK family protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D YPK_1986 mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D YPK_3178 Phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D YPK_1632 Phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D YPK_3181 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D YPK_3183 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D YPK_3182 NAD-dependent epimerase/dehydratase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D YPK_2508 Mandelate racemase/muconate lactonizing protein K18334 fucD; L-fuconate dehydratase [EC:4.2.1.68]
D YPK_2510 short-chain dehydrogenase/reductase SDR K18335 E1.1.1.434; 2-dehydro-3-deoxy-L-fuconate 4-dehydrogenase [EC:1.1.1.434]
D YPK_2509 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase K18336 lra6; 2,4-didehydro-3-deoxy-L-rhamnonate hydrolase [EC:3.7.1.26]
D YPK_3846 L-rhamnose isomerase K01813 rhaA; L-rhamnose isomerase [EC:5.3.1.14]
D YPK_3845 rhamnulokinase K00848 rhaB; rhamnulokinase [EC:2.7.1.5]
D YPK_3847 rhamnulose-1-phosphate aldolase K01629 rhaD; rhamnulose-1-phosphate aldolase [EC:4.1.2.19]
D YPK_4126 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D YPK_3766 Inositol phosphatase/fructose-16-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D YPK_4114 fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D YPK_0027 Mannitol dehydrogenase domain K00009 mtlD; mannitol-1-phosphate 5-dehydrogenase [EC:1.1.1.17]
D YPK_2763 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D YPK_0056 xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
D YPK_1922 Mannitol dehydrogenase domain K00007 dalD; D-arabinitol 4-dehydrogenase [EC:1.1.1.11]
D YPK_0853 fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D YPK_0129 ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D YPK_4118 Triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D YPK_3422 sugar-phosphate isomerase, RpiB/LacA/LacB family K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D YPK_2762 PTS system, fructose subfamily, IIC subunit K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D YPK_2464 PTS system, mannose/fructose/sorbose family, IIB subunit K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D YPK_2465 PTS system, mannose/fructose/sorbose family, IIC subunit K02795 manY; mannose PTS system EIIC component
D YPK_2466 PTS system, mannose/fructose/sorbose family, IID subunit K02796 manZ; mannose PTS system EIID component
D YPK_0026 PTS system, mannitol-specific IIC subunit K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]
D YPK_1554 HAD-superfamily hydrolase, subfamily IA, variant 3 K19270 hxpA; mannitol-1-/sugar-/sorbitol-6-phosphatase [EC:3.1.3.22 3.1.3.23 3.1.3.50]
D YPK_1808 HAD-superfamily hydrolase, subfamily IA, variant 3 K24204 hxpB; mannitol-1-/sugar-/sorbitol-6-/2-deoxyglucose-6-phosphatase [EC:3.1.3.22 3.1.3.23 3.1.3.50 3.1.3.68]
C 00052 Galactose metabolism [PATH:ypy00052]
D YPK_2946 galactose mutarotase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D YPK_2945 galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D YPK_2944 galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D YPK_2943 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D YPK_2536 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YPK_2537 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YPK_1152 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D YPK_1444 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D YPK_1739 glycoside hydrolase family 2 TIM barrel K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D YPK_0973 Beta-galactosidase K12308 bgaB; beta-galactosidase [EC:3.2.1.23]
D YPK_2493 glycoside hydrolase clan GH-D K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D YPK_4126 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D YPK_0982 class II aldolase, tagatose bisphosphate family K08302 gatY-kbaY; tagatose 1,6-diphosphate aldolase GatY/KbaY [EC:4.1.2.40]
D YPK_0994 D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit K16371 gatZ-kbaZ; D-tagatose-1,6-bisphosphate aldolase subunit GatZ/KbaZ
D YPK_0977 Alpha-glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D YPK_3271 alpha amylase catalytic region K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D YPK_0989 PTS system fructose subfamily IIA component K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-]
D YPK_0992 PTS system, mannose/fructose/sorbose family, IIB subunit K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-]
D YPK_0991 phosphotransferase system PTS sorbose-specific IIC subunit K02746 agaW; N-acetylgalactosamine PTS system EIIC component
D YPK_0990 PTS system mannose/fructose/sorbose family IID component K02747 agaE; N-acetylgalactosamine PTS system EIID component
D YPK_0988 N-acetylglucosamine-6-phosphate deacetylase K02079 agaA; N-acetylgalactosamine-6-phosphate deacetylase [EC:3.5.1.25]
D YPK_0993 sugar isomerase, AgaS family K02082 agaS; D-galactosamine 6-phosphate deaminase/isomerase [EC:3.5.99.-]
C 00053 Ascorbate and aldarate metabolism [PATH:ypy00053]
D YPK_2077 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D YPK_1548 putative PTS IIA-like nitrogen-regulatory protein PtsN K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D YPK_1547 phosphotransferase system lactose/cellobiose-specific IIB subunit K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D YPK_1546 putative sugar-specific permease SgaT/UlaA K03475 ulaA; ascorbate PTS system EIIC component
D YPK_3402 hexulose-6-phosphate isomerase K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22]
D YPK_3395 L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D YPK_2021 L-ribulose-5-phosphate 4-epimerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D YPK_3403 carbohydrate kinase FGGY K00880 lyxK; L-xylulokinase [EC:2.7.1.53]
C 00500 Starch and sucrose metabolism [PATH:ypy00500]
D YPK_0977 Alpha-glucosidase K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D YPK_3271 alpha amylase catalytic region K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D YPK_2536 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YPK_2537 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YPK_3072 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D YPK_0593 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D YPK_1146 phosphotransferase system PTS lactose/cellobiose-specific IIA subunit K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D YPK_1144 phosphotransferase system lactose/cellobiose-specific IIB subunit K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D YPK_1145 PTS system, lactose/cellobiose family IIC subunit K02761 celB; cellobiose PTS system EIIC component
D YPK_0241 glycoside hydrolase family 4 K01222 E3.2.1.86A; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D YPK_2805 glycoside hydrolase family 1 K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D YPK_3191 glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D YPK_0149 glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D YPK_0150 glycogen/starch synthase, ADP-glucose type K00703 glgA; starch synthase [EC:2.4.1.21]
D YPK_0147 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D YPK_0151 glycogen/starch/alpha-glucan phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D YPK_0161 glycogen/starch/alpha-glucan phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D YPK_0148 glycogen debranching enzyme GlgX K02438 glgX; glycogen debranching enzyme [EC:3.2.1.196]
D YPK_0016 alpha amylase catalytic region K01176 AMY; alpha-amylase [EC:3.2.1.1]
D YPK_0162 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25]
D YPK_1426 PTS system, glucose subfamily, IIA subunit K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D YPK_0495 PTS system, trehalose-specific IIBC subunit K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201]
D YPK_0494 alpha,alpha-phosphotrehalase K01226 treC; trehalose-6-phosphate hydrolase [EC:3.2.1.93]
D YPK_1152 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D YPK_1444 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D YPK_0373 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D YPK_3279 ROK family protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:ypy00520]
D YPK_0693 glycoside hydrolase family 18 K01183 E3.2.1.14; chitinase [EC:3.2.1.14]
D YPK_1700 glycoside hydrolase family 3 domain protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D YPK_2992 Beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D YPK_1426 PTS system, glucose subfamily, IIA subunit K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D YPK_2996 PTS system, N-acetylglucosamine-specific IIBC subunit K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D YPK_1710 ROK family protein K00884 NAGK; N-acetylglucosamine kinase [EC:2.7.1.59]
D YPK_2998 N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
D YPK_2997 glucosamine-6-phosphate isomerase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6]
D YPK_3279 ROK family protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D YPK_4229 glucosamine--fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D YPK_3734 phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D YPK_4228 UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D YPK_1249 glucokinase regulatory-like protein K07106 murQ; N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126]
D YPK_1878 protein of unknown function UPF0075 K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170]
D YPK_0518 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D YPK_0326 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D YPK_1404 ROK family protein K00885 nanK; N-acylmannosamine kinase [EC:2.7.1.60]
D YPK_1401 N-acylglucosamine-6-phosphate 2-epimerase K01788 nanE; N-acylglucosamine-6-phosphate 2-epimerase [EC:5.1.3.9]
D YPK_1400 dihydrodipicolinate synthetase K01639 E4.1.3.3; N-acetylneuraminate lyase [EC:4.1.3.3]
D YPK_4031 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D YPK_4030 nucleotide sugar dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
D YPK_1833 NAD-dependent epimerase/dehydratase K10011 arnA; UDP-4-amino-4-deoxy-L-arabinose formyltransferase / UDP-glucuronic acid dehydrogenase (UDP-4-keto-hexauronic acid decarboxylating) [EC:2.1.2.13 1.1.1.305]
D YPK_1831 DegT/DnrJ/EryC1/StrS aminotransferase K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87]
D YPK_1832 glycosyl transferase family 2 K10012 arnC; undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [EC:2.4.2.53]
D YPK_1834 polysaccharide deacetylase K13014 arnD; undecaprenyl phosphate-alpha-L-ara4FN deformylase [EC:3.5.1.-]
D YPK_1694 PTS system, glucose-specific IIBC subunit K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199]
D YPK_1444 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D YPK_1152 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D YPK_2536 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YPK_2537 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YPK_2077 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D YPK_2945 galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D YPK_2944 galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D YPK_2943 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D YPK_2464 PTS system, mannose/fructose/sorbose family, IIB subunit K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D YPK_2465 PTS system, mannose/fructose/sorbose family, IIC subunit K02795 manY; mannose PTS system EIIC component
D YPK_2466 PTS system, mannose/fructose/sorbose family, IID subunit K02796 manZ; mannose PTS system EIID component
D YPK_0373 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D YPK_1986 mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D YPK_3178 Phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D YPK_1632 Phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D YPK_3181 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D YPK_3183 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D YPK_3182 NAD-dependent epimerase/dehydratase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D YPK_3191 glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D YPK_3190 CDP-glucose 4,6-dehydratase K01709 rfbG; CDP-glucose 4,6-dehydratase [EC:4.2.1.45]
D YPK_3189 DegT/DnrJ/EryC1/StrS aminotransferase K12452 ascC; CDP-4-dehydro-6-deoxyglucose reductase, E1 [EC:1.17.1.1]
D YPK_3192 oxidoreductase FAD/NAD(P)-binding domain protein K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1]
D YPK_3188 NAD-dependent epimerase/dehydratase K12453 rfbS; CDP-paratose synthetase [EC:1.1.1.342]
D YPK_0149 glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
C 00620 Pyruvate metabolism [PATH:ypy00620]
D YPK_3921 acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D YPK_1913 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D YPK_3491 2-oxo-acid dehydrogenase E1 subunit, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D YPK_3490 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D YPK_3489 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPK_4081 pyridine nucleotide-disulphide oxidoreductase dimerisation region K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPK_2677 formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D YPK_2072 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D YPK_2571 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D YPK_1551 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D YPK_1550 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D YPK_1855 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D YPK_2136 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D YPK_1082 acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D YPK_0459 acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D YPK_0458 acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D YPK_1531 acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D YPK_2619 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D YPK_1974 Aldehyde Dehydrogenase K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-]
D YPK_2506 FMN-dependent alpha-hydroxy acid dehydrogenase K00101 lldD; L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3]
D YPK_2703 thiamine pyrophosphate protein TPP binding domain protein K00156 poxB; pyruvate dehydrogenase (quinone) [EC:1.2.5.1]
D YPK_1918 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28]
D YPK_2884 D-lactate dehydrogenase K03777 dld; D-lactate dehydrogenase (quinone) [EC:1.1.5.12]
D YPK_1869 lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D YPK_1106 hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D YPK_2652 beta-lactamase domain protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D YPK_0017 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D YPK_2562 Malate dehydrogenase (oxaloacetate-decarboxylating) K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D YPK_1391 Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)), Phosphate acetyltransferase K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D YPK_3761 malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D YPK_3404 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2]
D YPK_1985 fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D YPK_3813 fumarate reductase, flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D YPK_3814 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D YPK_3815 fumarate reductase subunit C K00246 frdC; succinate dehydrogenase subunit C
D YPK_3816 fumarate reductase D subunit K00247 frdD; succinate dehydrogenase subunit D
D YPK_4091 Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D YPK_0174 Phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D YPK_1843 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D YPK_0364 malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9]
D YPK_3535 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:ypy00630]
D YPK_0365 isocitrate lyase K01637 E4.1.3.1; isocitrate lyase [EC:4.1.3.1]
D YPK_3921 acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D YPK_0364 malate synthase A K01638 aceB; malate synthase [EC:2.3.3.9]
D YPK_3761 malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D YPK_2973 citrate synthase I K01647 CS; citrate synthase [EC:2.3.3.1]
D YPK_2030 aconitate hydratase 1 K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D YPK_3487 aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D YPK_2855 Catalase K03781 katE; catalase [EC:1.11.1.6]
D YPK_0017 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D YPK_0230 phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D YPK_4189 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D YPK_1265 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D YPK_0869 glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D YPK_0867 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D YPK_3489 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPK_4081 pyridine nucleotide-disulphide oxidoreductase dimerisation region K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPK_0868 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D YPK_0111 Glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D YPK_1616 tartrate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83]
D YPK_2132 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D YPK_0038 formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D YPK_0037 molybdopterin oxidoreductase Fe4S4 region K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D YPK_0039 formate dehydrogenase, beta subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D YPK_0040 formate dehydrogenase, gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma
D YPK_2080 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D YPK_2223 N-formylglutamate amidohydrolase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68]
C 00640 Propanoate metabolism [PATH:ypy00640]
D YPK_3921 acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D YPK_1551 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D YPK_1550 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D YPK_3489 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPK_4081 pyridine nucleotide-disulphide oxidoreductase dimerisation region K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPK_2677 formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D YPK_0463 quinone oxidoreductase, YhdH/YhfP family K19745 acuI; acrylyl-CoA reductase (NADPH) [EC:1.3.1.-]
D YPK_3933 fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D YPK_1509 fatty acid oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D YPK_1082 acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D YPK_0459 acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D YPK_0458 acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D YPK_1531 acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D YPK_1335 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D YPK_2966 succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D YPK_2965 succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D YPK_3049 methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D YPK_3487 aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D YPK_2624 methylglyoxal synthase K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3]
D YPK_0668 iron-containing alcohol dehydrogenase K08325 yqhD; NADP-dependent alcohol dehydrogenase [EC:1.1.-.-]
C 00650 Butanoate metabolism [PATH:ypy00650]
D YPK_3933 fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D YPK_1509 fatty acid oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D YPK_4244 Trans-2-enoyl-CoA reductase (NAD(+)) K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D YPK_2072 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D YPK_1616 tartrate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83]
D YPK_2970 succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D YPK_2969 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D YPK_2972 succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D YPK_2971 succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D YPK_3813 fumarate reductase, flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D YPK_3814 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D YPK_3815 fumarate reductase subunit C K00246 frdC; succinate dehydrogenase subunit C
D YPK_3816 fumarate reductase D subunit K00247 frdD; succinate dehydrogenase subunit D
D YPK_1335 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D YPK_2771 Aldehyde Dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D YPK_0486 succinic semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D YPK_2677 formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D YPK_1913 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D YPK_2608 Hydroxymethylglutaryl-coenzyme A synthase domain protein K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10]
D YPK_3531 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YPK_1950 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YPK_4061 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YPK_3530 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D YPK_1949 amino acid-binding ACT domain protein K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D YPK_4060 acetolactate synthase isozyme II small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:ypy00660]
D YPK_3531 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YPK_1950 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YPK_4061 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YPK_3530 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D YPK_1949 amino acid-binding ACT domain protein K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D YPK_4060 acetolactate synthase isozyme II small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D YPK_2268 acetyl-CoA hydrolase/transferase K18288 ict-Y; itaconate CoA-transferase [EC:2.8.3.-]
D YPK_2966 succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D YPK_2965 succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D YPK_2267 MaoC domain protein dehydratase K18290 ich-Y; itaconyl-CoA hydratase [EC:4.2.1.56]
D YPK_2266 HpcH/HpaI aldolase K18292 E4.1.3.25; (S)-citramalyl-CoA lyase [EC:4.1.3.25]
D YPK_4121 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase K10218 ligK; 4-hydroxy-4-methyl-2-oxoglutarate aldolase [EC:4.1.3.17]
D YPK_3537 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D YPK_3538 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D YPK_3536 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:ypy00562]
D YPK_1273 Inositol-phosphate phosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D YPK_1730 histidine acid phosphatase K01093 appA; 4-phytase / acid phosphatase [EC:3.1.3.26 3.1.3.2]
D YPK_3046 Inositol 2-dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D YPK_3040 Xylose isomerase domain protein TIM barrel K03335 iolE; inosose dehydratase [EC:4.2.1.44]
D YPK_3048 thiamine pyrophosphate protein domain protein TPP-binding K03336 iolD; 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) [EC:3.7.1.22]
D YPK_3039 Myo-inositol catabolism IolB domain protein K03337 iolB; 5-deoxy-glucuronate isomerase [EC:5.3.1.30]
D YPK_3041 PfkB domain protein K03338 iolC; 5-dehydro-2-deoxygluconokinase [EC:2.7.1.92]
D YPK_3049 methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D YPK_4118 Triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:ypy00190]
D YPK_1560 NADH-ubiquinone/plastoquinone oxidoreductase chain 3 K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D YPK_1561 NADH-quinone oxidoreductase, B subunit K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D YPK_1562 NADH dehydrogenase I, D subunit K13378 nuoCD; NADH-quinone oxidoreductase subunit C/D [EC:7.1.1.2]
D YPK_1563 NADH-quinone oxidoreductase, E subunit K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D YPK_1564 NADH-quinone oxidoreductase, F subunit K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D YPK_1565 NADH-quinone oxidoreductase, chain G K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D YPK_1566 NADH dehydrogenase (quinone) K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D YPK_1567 NADH-quinone oxidoreductase, chain I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D YPK_1568 NADH dehydrogenase (quinone) K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D YPK_1569 NADH-ubiquinone oxidoreductase chain 4L K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D YPK_1570 proton-translocating NADH-quinone oxidoreductase, chain L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D YPK_1571 proton-translocating NADH-quinone oxidoreductase, chain M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D YPK_1572 proton-translocating NADH-quinone oxidoreductase, chain N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D YPK_1702 FAD-dependent pyridine nucleotide-disulphide oxidoreductase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D YPK_2970 succinate dehydrogenase, flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D YPK_2969 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D YPK_2972 succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D YPK_2971 succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit
D YPK_3813 fumarate reductase, flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D YPK_3814 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D YPK_3815 fumarate reductase subunit C K00246 frdC; succinate dehydrogenase subunit C
D YPK_3816 fumarate reductase D subunit K00247 frdD; succinate dehydrogenase subunit D
D YPK_3245 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D YPK_3244 cytochrome o ubiquinol oxidase subunit IV K02300 cyoD; cytochrome o ubiquinol oxidase subunit IV
D YPK_3243 cytochrome o ubiquinol oxidase, subunit III K02299 cyoC; cytochrome o ubiquinol oxidase subunit III
D YPK_3242 cytochrome o ubiquinol oxidase, subunit I K02298 cyoB; cytochrome o ubiquinol oxidase subunit I [EC:7.1.1.3]
D YPK_3241 ubiquinol oxidase, subunit II K02297 cyoA; cytochrome o ubiquinol oxidase subunit II [EC:7.1.1.3]
D YPK_2964 cytochrome bd ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D YPK_2963 cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D YPK_2962 cyd operon protein YbgT K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7]
D YPK_4224 ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D YPK_4226 ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D YPK_4225 ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D YPK_4223 ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D YPK_4227 ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D YPK_4220 ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D YPK_4222 ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D YPK_4221 ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D YPK_3767 Inorganic diphosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D YPK_1344 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation in photosynthetic organisms
C 00720 Carbon fixation pathways in prokaryotes
C 00680 Methane metabolism [PATH:ypy00680]
D YPK_2571 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D YPK_2572 S-formylglutathione hydrolase K01070 frmB; S-formylglutathione hydrolase [EC:3.1.2.12]
D YPK_0038 formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D YPK_0037 molybdopterin oxidoreductase Fe4S4 region K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D YPK_0039 formate dehydrogenase, beta subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D YPK_0040 formate dehydrogenase, gamma subunit K00127 fdoI; formate dehydrogenase subunit gamma
D YPK_3829 formate dehydrogenase, alpha subunit K22015 fdhF; formate dehydrogenase (hydrogenase) [EC:1.17.98.4 1.17.98.-]
D YPK_1265 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D YPK_3446 Phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D YPK_4091 Phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D YPK_3761 malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D YPK_0853 fructose-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D YPK_0129 ketose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D YPK_3766 Inositol phosphatase/fructose-16-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D YPK_4114 fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D YPK_4126 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D YPK_1651 formaldehyde-activating enzyme K10713 fae; 5,6,7,8-tetrahydromethanopterin hydro-lyase [EC:4.2.1.147]
D YPK_1551 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D YPK_1550 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D YPK_3921 acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D YPK_1843 phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D YPK_2948 phosphoglycerate mutase 1 family K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D YPK_3610 Phosphoglycerate mutase K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D YPK_4141 phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D YPK_0859 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D YPK_2773 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D YPK_2671 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D YPK_3622 phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 00910 Nitrogen metabolism [PATH:ypy00910]
D YPK_1387 periplasmic nitrate reductase, large subunit K02567 napA; nitrate reductase (cytochrome) [EC:1.9.6.1]
D YPK_1388 Nitrate reductase cytochrome c-type subunit (NapB) K02568 napB; nitrate reductase (cytochrome), electron transfer subunit
D YPK_0235 nitrite reductase (NAD(P)H), large subunit K00362 nirB; nitrite reductase (NADH) large subunit [EC:1.7.1.15]
D YPK_0234 nitrite reductase (NAD(P)H), small subunit K00363 nirD; nitrite reductase (NADH) small subunit [EC:1.7.1.15]
D YPK_2701 hybrid cluster protein K05601 hcp; hydroxylamine reductase [EC:1.7.99.1]
D YPK_0119 Glutamate dehydrogenase (NADP(+)) K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D YPK_4189 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D YPK_0530 Glutamate synthase (ferredoxin) K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D YPK_0529 glutamate synthase, small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D YPK_3478 Carbonate dehydratase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
D YPK_1001 carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:ypy00920]
D YPK_1408 sulfate ABC transporter, periplasmic sulfate-binding protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein
D YPK_4125 sulfate ABC transporter, periplasmic sulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D YPK_1409 sulfate ABC transporter, inner membrane subunit K02046 cysU; sulfate/thiosulfate transport system permease protein
D YPK_1410 sulfate ABC transporter, inner membrane subunit CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D YPK_1411 sulfate ABC transporter, ATPase subunit K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D YPK_0258 taurine ABC transporter, periplasmic binding protein K15551 tauA; taurine transport system substrate-binding protein
D YPK_0260 binding-protein-dependent transport systems inner membrane component K15552 tauC; taurine transport system permease protein
D YPK_0259 ABC transporter related K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7]
D YPK_0261 Taurine dioxygenase K03119 tauD; taurine dioxygenase [EC:1.14.11.17]
D YPK_0421 aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D YPK_0423 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein
D YPK_0424 ABC transporter related K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D YPK_0422 Alkanesulfonate monooxygenase K04091 ssuD; alkanesulfonate monooxygenase [EC:1.14.14.5 1.14.14.34]
D YPK_3435 sulfate adenylyltransferase, large subunit K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D YPK_3436 sulfate adenylyltransferase, small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D YPK_3434 Adenylyl-sulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]
D YPK_3775 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D YPK_3440 phosphoadenosine phosphosulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]
D YPK_3442 sulfite reductase (NADPH) flavoprotein, alpha chain K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]
D YPK_3441 sulfite reductase (NADPH) hemoprotein, beta-component K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2]
D YPK_2866 Rhodanese domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D YPK_0159 Rhodanese domain protein K02439 glpE; thiosulfate sulfurtransferase [EC:2.8.1.1]
D YPK_4136 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D YPK_3224 Pyridoxal-5'-phosphate-dependent protein beta subunit K01738 cysK; cysteine synthase [EC:2.5.1.47]
D YPK_1429 cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D YPK_0363 Homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D YPK_4095 O-succinylhomoserine (thiol)-lyase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D YPK_3394 anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3]
D YPK_1456 anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3]
D YPK_1455 dimethylsulfoxide reductase, chain B K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B
D YPK_3393 dimethylsulfoxide reductase, chain B K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B
D YPK_3392 DMSO reductase anchor subunit (DmsC) K07308 dmsC; anaerobic dimethyl sulfoxide reductase subunit C
D YPK_1454 putative anaerobic dimethyl sulfoxide reductase, C subunit K07308 dmsC; anaerobic dimethyl sulfoxide reductase subunit C
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:ypy00061]
D YPK_1082 acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D YPK_0459 acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D YPK_0458 acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D YPK_1531 acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D YPK_1687 acyl carrier protein K02078 acpP; acyl carrier protein
D YPK_1685 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D YPK_2602 putative acyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D YPK_1684 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D YPK_2217 Beta-ketoacyl-acyl-carrier-protein synthase I K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D YPK_1520 Beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D YPK_2610 Beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D YPK_1688 3-oxoacyl-(acyl-carrier-protein) synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D YPK_2636 3-oxoacyl-(acyl-carrier-protein) synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D YPK_1686 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D YPK_2609 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D YPK_2634 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D YPK_2611 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D YPK_1077 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D YPK_4244 Trans-2-enoyl-CoA reductase (NAD(+)) K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D YPK_3532 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D YPK_2125 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:ypy00071]
D YPK_1508 acetyl-CoA C-acyltransferase FadI K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D YPK_3934 acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D YPK_3933 fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D YPK_1509 fatty acid oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D YPK_3309 Protein of unknown function DUF1974 K06445 fadE; acyl-CoA dehydrogenase [EC:1.3.99.-]
D YPK_3532 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D YPK_2125 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D YPK_1027 AMP-dependent synthetase and ligase K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20]
D YPK_2571 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D YPK_2072 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:ypy00561]
D YPK_0111 Glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D YPK_3419 Glycerone kinase K05878 dhaK; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaK [EC:2.7.1.121]
D YPK_3418 dihydroxyacetone kinase, L subunit K05879 dhaL; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaL [EC:2.7.1.121]
D YPK_4113 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D YPK_3381 carbohydrate kinase FGGY K00864 glpK; glycerol kinase [EC:2.7.1.30]
D YPK_3862 Glycerol-3-phosphate O-acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D YPK_1683 fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D YPK_0638 protein of unknown function DUF205 K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D YPK_0663 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D YPK_3861 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D YPK_2493 glycoside hydrolase clan GH-D K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
C 00564 Glycerophospholipid metabolism [PATH:ypy00564]
D YPK_4137 Glycerol-3-phosphate dehydrogenase (NAD(P)(+)) K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D YPK_3991 glycerol-3-phosphate dehydrogenase, anaerobic, A subunit K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D YPK_0152 FAD dependent oxidoreductase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D YPK_3990 glycerol-3-phosphate dehydrogenase, anaerobic, B subunit K00112 glpB; glycerol-3-phosphate dehydrogenase subunit B [EC:1.1.5.3]
D YPK_3989 glycerol-3-phosphate dehydrogenase, anaerobic, C subunit K00113 glpC; glycerol-3-phosphate dehydrogenase subunit C
D YPK_3862 Glycerol-3-phosphate O-acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D YPK_0638 protein of unknown function DUF205 K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D YPK_0663 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D YPK_3861 diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D YPK_3999 Phospholipase A(2) K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
D YPK_3995 Lysophospholipase K01048 pldB; lysophospholipase [EC:3.1.1.5]
D YPK_3958 Glycerophosphodiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D YPK_3992 glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D YPK_1027 AMP-dependent synthetase and ligase K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20]
D YPK_0105 CDP-diacylglycerol diphosphatase K01521 cdh; CDP-diacylglycerol pyrophosphatase [EC:3.6.1.26]
D YPK_3083 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D YPK_1072 Phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D YPK_3344 phospholipase D/Transphosphatidylase K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D YPK_3810 phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D YPK_2354 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D YPK_3254 phosphatidylglycerophosphatase A K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27]
D YPK_2028 Phosphatidylglycerophosphatase K01096 pgpB; phosphatidylglycerophosphatase B [EC:3.1.3.27 3.6.1.75 3.1.3.4 3.6.1.27]
D YPK_1250 HAD superfamily (subfamily IF) hydrolase, YfhB K18697 pgpC; phosphatidylglycerophosphatase C [EC:3.1.3.27]
D YPK_2063 phospholipase D/Transphosphatidylase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
C 00565 Ether lipid metabolism [PATH:ypy00565]
D YPK_3999 Phospholipase A(2) K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00600 Sphingolipid metabolism [PATH:ypy00600]
D YPK_2212 putative glycosyl transferase K00720 UGCG; ceramide glucosyltransferase [EC:2.4.1.80]
D YPK_1739 glycoside hydrolase family 2 TIM barrel K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D YPK_2493 glycoside hydrolase clan GH-D K07407 E3.2.1.22B; alpha-galactosidase [EC:3.2.1.22]
D YPK_2992 Beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
C 00590 Arachidonic acid metabolism
D YPK_3999 Phospholipase A(2) K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00591 Linoleic acid metabolism
D YPK_3999 Phospholipase A(2) K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00592 alpha-Linolenic acid metabolism [PATH:ypy00592]
D YPK_3999 Phospholipase A(2) K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
D YPK_1508 acetyl-CoA C-acyltransferase FadI K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D YPK_3934 acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01040 Biosynthesis of unsaturated fatty acids [PATH:ypy01040]
D YPK_3159 Lysophospholipase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D YPK_3217 acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
D YPK_2054 thioesterase superfamily protein K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:ypy00230]
D YPK_0655 ADP-ribose diphosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D YPK_0180 NUDIX hydrolase K08312 nudE; ADP compounds hydrolase [EC:3.6.1.-]
D YPK_3625 phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7]
D YPK_1152 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D YPK_2184 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D YPK_1535 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D YPK_0356 phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D YPK_1350 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D YPK_2447 phosphoribosylglycinamide formyltransferase 2 K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21]
D YPK_1253 phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
D YPK_1351 phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D YPK_3156 phosphoribosylaminoimidazole carboxylase, ATPase subunit K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D YPK_3155 phosphoribosylaminoimidazole carboxylase, catalytic subunit K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D YPK_1364 phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D YPK_1718 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D YPK_0357 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D YPK_3199 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D YPK_0074 phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D YPK_3428 stationary-phase survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D YPK_3000 HAD-superfamily hydrolase, subfamily IIA K02566 nagD; 5'-nucleotidase [EC:3.1.3.5]
D YPK_0177 HAD-superfamily hydrolase, subfamily IA, variant 3 K20881 yrfG; GMP/IMP 5'-nucleotidase [EC:3.1.3.-]
D YPK_3176 Inosine kinase K00892 gsk; inosine kinase [EC:2.7.1.73]
D YPK_2911 xanthosine phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D YPK_3624 purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D YPK_3281 protein of unknown function DUF1255 K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2]
D YPK_3350 protein of unknown function DUF152 K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D YPK_3479 hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D YPK_1302 inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D YPK_1289 Nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D YPK_3611 protein of unknown function DUF84 K01529 yjjX; inosine/xanthosine triphosphatase [EC:3.6.1.73]
D YPK_0827 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D YPK_3291 Xanthine phosphoribosyltransferase K00769 gpt; xanthine phosphoribosyltransferase [EC:2.4.2.22]
D YPK_1303 GMP synthase, large subunit K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D YPK_3501 guanosine monophosphate reductase K00364 guaC; GMP reductase [EC:1.7.1.7]
D YPK_4176 Guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D YPK_1117 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D YPK_2848 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D YPK_1116 Ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D YPK_2849 Ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D YPK_3691 anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D YPK_3453 deoxyguanosinetriphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1]
D YPK_1557 metal dependent phosphohydrolase K08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89]
D YPK_4178 (p)ppGpp synthetase I, SpoT/RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D YPK_4037 Ppx/GppA phosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D YPK_1343 Ppx/GppA phosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D YPK_3449 (p)ppGpp synthetase I, SpoT/RelA K00951 relA; GTP pyrophosphokinase [EC:2.7.6.5]
D YPK_4015 putative adenylate cyclase K05851 cyaA; adenylate cyclase, class 1 [EC:4.6.1.1]
D YPK_1164 cyclic-AMP phosphodiesterase K01120 cpdP; 3',5'-cyclic-nucleotide phosphodiesterase [EC:3.1.4.17]
D YPK_3793 Adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D YPK_1993 adenosine deaminase K01488 add; adenosine deaminase [EC:3.5.4.4]
D YPK_1955 AMP nucleosidase K01241 amn; AMP nucleosidase [EC:3.2.2.4]
D YPK_1056 conserved hypothetical protein K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-]
D YPK_3776 2',3'-cyclic-nucleotide 2'-phosphodiesterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D YPK_3194 Nucleoside-triphosphate--adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D YPK_3448 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D YPK_0657 metallophosphoesterase K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]
D YPK_3575 bis(5'nucleosyl)-tetraphosphatase, ApaH K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41]
D YPK_3434 Adenylyl-sulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]
D YPK_3435 sulfate adenylyltransferase, large subunit K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D YPK_3436 sulfate adenylyltransferase, small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D YPK_1111 urate catabolism protein K16842 hpxB; allantoinase [EC:3.5.2.5]
D YPK_3324 amidase, hydantoinase/carbamoylase family K02083 allC; allantoate deiminase [EC:3.5.3.9]
D YPK_3325 aminotransferase class V K00839 pucG; (S)-ureidoglycine---glyoxylate transaminase [EC:2.6.1.112]
D YPK_1133 urease, alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D YPK_1132 urease, beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5]
D YPK_1131 urease, gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5]
D YPK_3332 amidohydrolase, AtzE family K22601 hpxY; oxamate carbamoyltransferase [EC:2.1.3.5]
C 00240 Pyrimidine metabolism [PATH:ypy00240]
D YPK_3582 carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D YPK_3583 carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D YPK_0500 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D YPK_0499 aspartate carbamoyltransferase, regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit
D YPK_1675 dihydroorotase, homodimeric type K01465 URA4; dihydroorotase [EC:3.5.2.3]
D YPK_2644 Dihydroorotate oxidase K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D YPK_4159 orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D YPK_2024 orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D YPK_1068 uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D YPK_1289 Nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D YPK_3448 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D YPK_0468 maf protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D YPK_0560 protein of unknown function DUF45 K07043 upp; UTP pyrophosphatase [EC:3.6.1.-]
D YPK_3447 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D YPK_2669 cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D YPK_2086 NUDIX hydrolase K08320 nudG; (d)CTP diphosphatase [EC:3.6.1.65]
D YPK_2552 uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48]
D YPK_3428 stationary-phase survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D YPK_3000 HAD-superfamily hydrolase, subfamily IIA K02566 nagD; 5'-nucleotidase [EC:3.1.3.5]
D YPK_1948 HAD-superfamily hydrolase, subfamily IA, variant 1 K08723 yjjG; pyrimidine 5'-nucleotidase [EC:3.1.3.-]
D YPK_3950 uridine phosphorylase K00757 udp; uridine phosphorylase [EC:2.4.2.3]
D YPK_3281 protein of unknown function DUF1255 K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2]
D YPK_1352 uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D YPK_3776 2',3'-cyclic-nucleotide 2'-phosphodiesterase K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D YPK_1056 conserved hypothetical protein K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-]
D YPK_2561 cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D YPK_0237 N-isopropylammelide isopropylaminohydrolase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21]
D YPK_3691 anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D YPK_2551 deoxycytidine triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D YPK_1117 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D YPK_2848 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D YPK_1116 Ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D YPK_2849 Ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D YPK_1557 metal dependent phosphohydrolase K08722 yfbR; 5'-deoxynucleotidase [EC:3.1.3.89]
D YPK_1691 dTMP kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D YPK_4157 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D YPK_3626 thymidine phosphorylase K00758 deoA; thymidine phosphorylase [EC:2.4.2.4]
D YPK_2073 Thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21]
D YPK_1036 Thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D YPK_1976 short-chain dehydrogenase/reductase SDR K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:ypy00250]
D YPK_2650 Aspartate transaminase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D YPK_1181 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D YPK_2674 L-asparaginase, type II K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D YPK_2092 L-asparaginase, type I K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D YPK_4214 Aspartate--ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1]
D YPK_3001 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D YPK_3323 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase K13566 NIT2; omega-amidase [EC:3.5.1.3]
D YPK_1558 aminotransferase class I and II K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D YPK_3825 aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1]
D YPK_2505 Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D YPK_4087 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D YPK_3793 Adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D YPK_1718 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D YPK_0500 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D YPK_0499 aspartate carbamoyltransferase, regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit
D YPK_1335 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D YPK_2771 Aldehyde Dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D YPK_0486 succinic semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D YPK_0530 Glutamate synthase (ferredoxin) K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D YPK_0529 glutamate synthase, small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D YPK_0119 Glutamate dehydrogenase (NADP(+)) K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D YPK_2369 delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D YPK_4189 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D YPK_3582 carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D YPK_3583 carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D YPK_0823 Glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D YPK_2254 Glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D YPK_4229 glucosamine--fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D YPK_1535 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:ypy00260]
D YPK_0372 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D YPK_3604 aspartate kinase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D YPK_4094 aspartate kinase K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D YPK_0141 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D YPK_3603 homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D YPK_3602 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D YPK_2705 Threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48]
D YPK_1265 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D YPK_0017 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00090 ghrB; glyoxylate/hydroxypyruvate/2-ketogluconate reductase [EC:1.1.1.79 1.1.1.81 1.1.1.215]
D YPK_0111 Glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D YPK_2948 phosphoglycerate mutase 1 family K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D YPK_3610 Phosphoglycerate mutase K15634 gpmB; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D YPK_4141 phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D YPK_0859 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D YPK_2773 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D YPK_2671 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D YPK_3622 phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D YPK_1976 short-chain dehydrogenase/reductase SDR K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
D YPK_4145 2-amino-3-ketobutyrate coenzyme A ligase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D YPK_4144 L-threonine 3-dehydrogenase K00060 tdh; threonine 3-dehydrogenase [EC:1.1.1.103]
D YPK_0869 glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D YPK_0867 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D YPK_3489 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPK_4081 pyridine nucleotide-disulphide oxidoreductase dimerisation region K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPK_0868 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D YPK_3344 phospholipase D/Transphosphatidylase K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D YPK_2917 choline dehydrogenase K00108 betA; choline dehydrogenase [EC:1.1.99.1]
D YPK_2916 betaine aldehyde dehydrogenase K00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8]
D YPK_2451 L-serine dehydratase 1 K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D YPK_4056 threonine dehydratase, biosynthetic K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D YPK_0008 Pyridoxal-5'-phosphate-dependent protein beta subunit K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D YPK_1521 aspartate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10]
D YPK_1764 alanine racemase K25317 alr; amino-acid racemase [EC:5.1.1.10]
D YPK_2047 tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D YPK_2046 tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D YPK_2547 Pyridoxal-dependent decarboxylase K13745 ddc; L-2,4-diaminobutyrate decarboxylase [EC:4.1.1.86]
C 00270 Cysteine and methionine metabolism [PATH:ypy00270]
D YPK_4136 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D YPK_3224 Pyridoxal-5'-phosphate-dependent protein beta subunit K01738 cysK; cysteine synthase [EC:2.5.1.47]
D YPK_1429 cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D YPK_0671 cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D YPK_3894 cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D YPK_1968 aminotransferase class I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D YPK_1417 aminotransferase class I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D YPK_0368 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D YPK_3952 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D YPK_0843 Methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D YPK_3483 S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D YPK_3482 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D YPK_1656 autoinducer synthesis protein K22956 expI; acyl homoserine lactone synthase [EC:2.3.1.184]
D YPK_0792 autoinducer synthesis protein K22956 expI; acyl homoserine lactone synthase [EC:2.3.1.184]
D YPK_3454 Adenosylhomocysteine nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D YPK_3317 5-methylthioribose kinase K00899 mtnK; 5-methylthioribose kinase [EC:2.7.1.100]
D YPK_3350 protein of unknown function DUF152 K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D YPK_3318 translation initiation factor, aIF-2BI family K08963 mtnA; methylthioribose-1-phosphate isomerase [EC:5.3.1.23]
D YPK_3321 methylthioribulose-1-phosphate dehydratase K08964 mtnB; methylthioribulose-1-phosphate dehydratase [EC:4.2.1.109]
D YPK_3320 2,3-diketo-5-methylthio-1-phosphopentane phosphatase K09880 mtnC; enolase-phosphatase E1 [EC:3.1.3.77]
D YPK_3319 Acireductone dioxygenase ARD K08967 mtnD; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [EC:1.13.11.53 1.13.11.54]
D YPK_3853 Aromatic-amino-acid transaminase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D YPK_1781 conserved hypothetical protein K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14]
D YPK_2321 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D YPK_3368 quorum-sensing autoinducer 2 (AI-2), LuxS K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D YPK_0372 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D YPK_3604 aspartate kinase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D YPK_4094 aspartate kinase K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D YPK_0141 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D YPK_0363 Homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D YPK_4095 O-succinylhomoserine (thiol)-lyase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D YPK_4059 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D YPK_3369 glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D YPK_0838 glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D YPK_2650 Aspartate transaminase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D YPK_2866 Rhodanese domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D YPK_1521 aspartate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10]
D YPK_1764 alanine racemase K25317 alr; amino-acid racemase [EC:5.1.1.10]
D YPK_2377 pyridoxal phosphate-dependent enzyme, D-cysteine desulfhydrase family K05396 dcyD; D-cysteine desulfhydrase [EC:4.4.1.15]
D YPK_3761 malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D YPK_2451 L-serine dehydratase 1 K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D YPK_1412 cysteine synthase B K12339 cysM; S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent) [EC:2.5.1.144]
D YPK_0859 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D YPK_2773 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D YPK_2671 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:ypy00280]
D YPK_4059 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D YPK_3489 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPK_4081 pyridine nucleotide-disulphide oxidoreductase dimerisation region K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPK_3933 fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D YPK_1509 fatty acid oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D YPK_1508 acetyl-CoA C-acyltransferase FadI K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D YPK_3934 acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D YPK_3049 methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
D YPK_2608 Hydroxymethylglutaryl-coenzyme A synthase domain protein K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:ypy00290]
D YPK_4056 threonine dehydratase, biosynthetic K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D YPK_0008 Pyridoxal-5'-phosphate-dependent protein beta subunit K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D YPK_3537 3-isopropylmalate dehydratase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D YPK_3538 3-isopropylmalate dehydratase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D YPK_3536 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D YPK_3531 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YPK_1950 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YPK_4061 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YPK_3530 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D YPK_1949 amino acid-binding ACT domain protein K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D YPK_4060 acetolactate synthase isozyme II small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D YPK_4051 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D YPK_4057 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D YPK_4059 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D YPK_0014 aminotransferase class I and II K00835 avtA; valine--pyruvate aminotransferase [EC:2.6.1.66]
D YPK_1558 aminotransferase class I and II K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D YPK_3535 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:ypy00300]
D YPK_0372 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D YPK_3604 aspartate kinase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D YPK_4094 aspartate kinase K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D YPK_0141 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D YPK_1362 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D YPK_3584 Dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D YPK_1063 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D YPK_0245 succinylornithine transaminase family K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D YPK_1372 succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D YPK_4011 Diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D YPK_1024 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D YPK_2257 putative transcriptional regulator, GntR family K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-]
D YPK_3523 UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D YPK_3522 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:ypy00310]
D YPK_2967 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D YPK_3489 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPK_4081 pyridine nucleotide-disulphide oxidoreductase dimerisation region K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPK_3933 fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D YPK_1509 fatty acid oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D YPK_1521 aspartate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10]
D YPK_1764 alanine racemase K25317 alr; amino-acid racemase [EC:5.1.1.10]
D YPK_2771 Aldehyde Dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D YPK_0486 succinic semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D YPK_2663 protein of unknown function DUF1338 K25986 ydcJ; 2-oxoadipate dioxygenase/decarboxylase [EC:1.13.11.93]
D YPK_1845 FAD linked oxidase domain protein K26063 ydiJ; (R)-2-hydroxyglutarate dehydrogenase [EC:1.1.-.-]
C 00220 Arginine biosynthesis [PATH:ypy00220]
D YPK_3684 ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D YPK_2505 Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D YPK_4087 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D YPK_1133 urease, alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D YPK_1132 urease, beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5]
D YPK_1131 urease, gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5]
D YPK_0823 Glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D YPK_2254 Glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D YPK_4189 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D YPK_0119 Glutamate dehydrogenase (NADP(+)) K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D YPK_2650 Aspartate transaminase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D YPK_1558 aminotransferase class I and II K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D YPK_1045 amino-acid N-acetyltransferase K14682 argAB; amino-acid N-acetyltransferase [EC:2.3.1.1]
D YPK_4088 acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D YPK_4089 N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D YPK_0245 succinylornithine transaminase family K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D YPK_4090 acetylornithine deacetylase (ArgE) K01438 argE; acetylornithine deacetylase [EC:3.5.1.16]
C 00330 Arginine and proline metabolism [PATH:ypy00330]
D YPK_0237 N-isopropylammelide isopropylaminohydrolase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21]
D YPK_2860 Lysine decarboxylase K01584 adiA; arginine decarboxylase [EC:4.1.1.19]
D YPK_0845 arginine decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19]
D YPK_0834 agmatine deiminase K10536 aguA; agmatine deiminase [EC:3.5.3.12]
D YPK_0835 N-carbamoylputrescine amidase K12251 aguB; N-carbamoylputrescine amidase [EC:3.5.1.53]
D YPK_0811 Ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
D YPK_3482 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
D YPK_3483 S-adenosylmethionine decarboxylase proenzyme K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D YPK_1349 GCN5-related N-acetyltransferase K00657 speG; diamine N-acetyltransferase [EC:2.3.1.57]
D YPK_2228 arginine N-succinyltransferase K00673 astA; arginine N-succinyltransferase [EC:2.3.1.109]
D YPK_2226 succinylarginine dihydrolase K01484 astB; succinylarginine dihydrolase [EC:3.5.3.23]
D YPK_2229 succinylornithine transaminase family K00840 astC; succinylornithine aminotransferase [EC:2.6.1.81]
D YPK_2227 succinylglutamic semialdehyde dehydrogenase K06447 astD; succinylglutamic semialdehyde dehydrogenase [EC:1.2.1.71]
D YPK_2225 succinylglutamate desuccinylase K05526 astE; succinylglutamate desuccinylase [EC:3.5.1.96]
D YPK_0831 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D YPK_2369 delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D YPK_3288 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D YPK_3287 gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D YPK_2440 proline iminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D YPK_2650 Aspartate transaminase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
C 00340 Histidine metabolism [PATH:ypy00340]
D YPK_2525 ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D YPK_2532 phosphoribosyl-ATP diphosphatase K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31]
D YPK_2530 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D YPK_2529 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D YPK_2531 imidazoleglycerol phosphate synthase, cyclase subunit K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D YPK_2528 histidinol-phosphatase K01089 hisB; imidazoleglycerol-phosphate dehydratase / histidinol-phosphatase [EC:4.2.1.19 3.1.3.15]
D YPK_2527 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D YPK_2526 Histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D YPK_0077 histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3]
D YPK_0076 urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49]
D YPK_2222 imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7]
D YPK_2220 formiminoglutamate deiminase K05603 hutF; formimidoylglutamate deiminase [EC:3.5.3.13]
D YPK_2223 N-formylglutamate amidohydrolase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68]
C 00350 Tyrosine metabolism [PATH:ypy00350]
D YPK_2650 Aspartate transaminase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D YPK_2527 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D YPK_3853 Aromatic-amino-acid transaminase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D YPK_2867 Aromatic-L-amino-acid decarboxylase K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105]
D YPK_2571 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D YPK_2072 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D YPK_2453 4-hydroxyphenylacetate 3-monooxygenase, oxygenase subunit K00483 hpaB; 4-hydroxyphenylacetate 3-monooxygenase [EC:1.14.14.9]
D YPK_2452 4-hydroxyphenylacetate 3-monooxygenase, reductase subunit K00484 hpaC; flavin reductase (NADH) [EC:1.5.1.36]
D YPK_2458 3,4-dihydroxyphenylacetate 2,3-dioxygenase K00455 hpaD; 3,4-dihydroxyphenylacetate 2,3-dioxygenase [EC:1.13.11.15]
D YPK_2459 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase K00151 hpaE; 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase [EC:1.2.1.60]
D YPK_2457 5-carboxymethyl-2-hydroxymuconate isomerase K01826 hpaF; 5-carboxymethyl-2-hydroxymuconate isomerase [EC:5.3.3.10]
D YPK_2460 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase,HpaG2 subunit K05921 hpaG; 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase [EC:4.1.1.68 5.3.3.-]
D YPK_2461 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, HpaG1 subunit K05921 hpaG; 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase [EC:4.1.1.68 5.3.3.-]
D YPK_2456 2-oxo-hepta-3-ene-1,7-dioic acid hydratase K02509 hpaH; 2-oxo-hept-3-ene-1,7-dioate hydratase [EC:4.2.1.-]
D YPK_2455 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase K02510 hpaI; 4-hydroxy-2-oxoheptanedioate aldolase [EC:4.1.2.52]
D YPK_2771 Aldehyde Dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D YPK_0486 succinic semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00360 Phenylalanine metabolism [PATH:ypy00360]
D YPK_2867 Aromatic-L-amino-acid decarboxylase K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105]
D YPK_2650 Aspartate transaminase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D YPK_2527 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D YPK_3853 Aromatic-amino-acid transaminase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D YPK_2107 D-amino-acid dehydrogenase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
D YPK_3388 catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21]
C 00380 Tryptophan metabolism [PATH:ypy00380]
D YPK_2967 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D YPK_3489 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPK_4081 pyridine nucleotide-disulphide oxidoreductase dimerisation region K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPK_3933 fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D YPK_1509 fatty acid oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D YPK_2867 Aromatic-L-amino-acid decarboxylase K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105]
D YPK_2855 Catalase K03781 katE; catalase [EC:1.11.1.6]
D YPK_3388 catalase/peroxidase HPI K03782 katG; catalase-peroxidase [EC:1.11.1.21]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:ypy00400]
D YPK_1841 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D YPK_3357 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D YPK_2949 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D YPK_0226 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D YPK_0460 3-dehydroquinate dehydratase, type II K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D YPK_0321 shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D YPK_0225 Shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D YPK_3282 Shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D YPK_2670 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D YPK_1514 Chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D YPK_2042 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D YPK_2043 glutamine amidotransferase of anthranilate synthase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D YPK_2044 anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D YPK_2045 Indole-3-glycerol-phosphate synthase., Phosphoribosylanthranilate isomerase K13498 trpCF; indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase [EC:4.1.1.48 5.3.1.24]
D YPK_2047 tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D YPK_2046 tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D YPK_3356 chorismate mutase K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12]
D YPK_2709 chorismate mutase K04093 pheA1; chorismate mutase [EC:5.4.99.5]
D YPK_3355 chorismate mutase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D YPK_3412 Arogenate dehydratase K01713 pheC; cyclohexadienyl dehydratase [EC:4.2.1.51 4.2.1.91]
D YPK_2650 Aspartate transaminase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D YPK_2527 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D YPK_3853 Aromatic-amino-acid transaminase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:ypy00410]
D YPK_3474 aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D YPK_1335 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D YPK_3473 pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D YPK_3933 fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D YPK_1509 fatty acid oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D YPK_3049 methylmalonate-semialdehyde dehydrogenase K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
C 00430 Taurine and hypotaurine metabolism [PATH:ypy00430]
D YPK_3269 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D YPK_0261 Taurine dioxygenase K03119 tauD; taurine dioxygenase [EC:1.14.11.17]
D YPK_1550 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D YPK_1551 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism [PATH:ypy00440]
D YPK_3696 phosphonate metabolism K06164 phnI; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI [EC:2.7.8.37]
D YPK_3694 phosphonate C-P lyase system protein PhnG K06166 phnG; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnG [EC:2.7.8.37]
D YPK_3695 phosphonate C-P lyase system protein PhnH K06165 phnH; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnH [EC:2.7.8.37]
D YPK_3699 phosphonate C-P lyase system protein PhnL K05780 phnL; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [EC:2.7.8.37]
D YPK_3700 phosphonate metabolism protein PhnM K06162 phnM; alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase [EC:3.6.1.63]
D YPK_3697 phosphonate metabolism PhnJ K06163 phnJ; alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase [EC:4.7.1.1]
D YPK_3702 phosphonate metabolism protein PhnP K06167 phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]
C 00450 Selenocompound metabolism [PATH:ypy00450]
D YPK_4095 O-succinylhomoserine (thiol)-lyase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D YPK_0671 cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D YPK_3894 cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D YPK_1968 aminotransferase class I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D YPK_1417 aminotransferase class I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D YPK_0368 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D YPK_3952 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D YPK_1851 cysteine desulfurase, SufS subfamily K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D YPK_2687 thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D YPK_3435 sulfate adenylyltransferase, large subunit K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D YPK_3436 sulfate adenylyltransferase, small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D YPK_2089 selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D YPK_0042 L-seryl-tRNA(Sec) selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D YPK_2554 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:ypy00460]
D YPK_3072 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D YPK_0593 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D YPK_3269 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D YPK_2674 L-asparaginase, type II K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D YPK_2092 L-asparaginase, type I K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D YPK_4214 Aspartate--ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1]
D YPK_1265 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:ypy00470]
D YPK_3854 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D YPK_3516 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D YPK_1521 aspartate racemase K25316 racX; amino-acid racemase [EC:5.1.1.10]
D YPK_1764 alanine racemase K25317 alr; amino-acid racemase [EC:5.1.1.10]
D YPK_0823 Glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D YPK_2254 Glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D YPK_4072 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D YPK_3520 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D YPK_1904 Mandelate racemase/muconate lactonizing protein K19802 ycjG; L-Ala-D/L-Glu epimerase / N-acetyl-D-glutamate racemase [EC:5.1.1.20 5.1.1.25]
D YPK_2377 pyridoxal phosphate-dependent enzyme, D-cysteine desulfhydrase family K05396 dcyD; D-cysteine desulfhydrase [EC:4.4.1.15]
D YPK_4011 Diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D YPK_1024 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D YPK_2717 conserved hypothetical protein K23120 cntL; histidine 2-aminobutanoyltransferase [EC:2.5.1.152 2.5.1.-]
D YPK_2716 conserved hypothetical protein K23122 cntM; staphylopine/pseudopaline/yersinopine synthase [EC:1.5.1.52 1.5.1.-]
D YPK_2107 D-amino-acid dehydrogenase K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
C 00480 Glutathione metabolism [PATH:ypy00480]
D YPK_3269 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D YPK_1169 LamB/YcsF family protein K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9]
D YPK_1167 Allophanate hydrolase subunit 1 K23123 pxpB; 5-oxoprolinase (ATP-hydrolysing) subunit B [EC:3.5.2.9]
D YPK_1168 urea amidolyase related protein K23124 pxpC; 5-oxoprolinase (ATP-hydrolysing) subunit C [EC:3.5.2.9]
D YPK_3369 glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D YPK_0838 glutathione synthetase K01920 gshB; glutathione synthase [EC:6.3.2.3]
D YPK_3679 Leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D YPK_1284 PepB aminopeptidase K07751 pepB; PepB aminopeptidase [EC:3.4.11.23]
D YPK_2645 aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D YPK_3295 aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D YPK_1883 Glutathione S-transferase domain K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D YPK_2747 Glutathione S-transferase domain K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D YPK_0114 glutathione-disulfide reductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7]
D YPK_1723 isocitrate dehydrogenase, NADP-dependent K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D YPK_2535 6-phosphogluconate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D YPK_2134 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D YPK_1829 Glutathione peroxidase K00432 gpx; glutathione peroxidase [EC:1.11.1.9]
D YPK_4080 glutaredoxin-family domain protein K24136 pgdX; glutathione-dependent peroxiredoxin [EC:1.11.1.27]
D YPK_0811 Ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
D YPK_3482 spermidine synthase K00797 speE; spermidine synthase [EC:2.5.1.16]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation [PATH:ypy00511]
D YPK_1739 glycoside hydrolase family 2 TIM barrel K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D YPK_2992 Beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
C 00540 Lipopolysaccharide biosynthesis [PATH:ypy00540]
D YPK_1078 acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D YPK_3512 UDP-3-0-acyl N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D YPK_1076 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D YPK_3154 UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D YPK_1079 lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D YPK_2664 tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D YPK_0510 KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D YPK_2175 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D YPK_0509 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D YPK_2660 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D YPK_4149 Three-deoxy-D-manno-octulosonic-acid transferase domain protein K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D YPK_1665 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D YPK_2138 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243]
D YPK_2783 phosphoesterase PA-phosphatase related K19803 lpxT; Kdo2-lipid A phosphotransferase [EC:2.7.4.29]
D YPK_1873 protein of unknown function DUF1705 K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D YPK_0080 sulfatase K12975 eptB; KDO II ethanolaminephosphotransferase [EC:2.7.8.42]
D YPK_2476 Antimicrobial peptide resistance and lipid A acylation PagP K12973 pagP; lipid IVA palmitoyltransferase [EC:2.3.1.251]
D YPK_1835 glycosyl transferase family 39 K07264 arnT; 4-amino-4-deoxy-L-arabinose transferase [EC:2.4.2.43]
D YPK_0430 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase K12974 lpxP; KDO2-lipid IV(A) palmitoleoyltransferase [EC:2.3.1.242]
D YPK_3308 phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D YPK_0645 rfaE bifunctional protein K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D YPK_1097 D,D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D YPK_4146 ADP-L-glycero-D-manno-heptose-6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D YPK_4148 lipopolysaccharide heptosyltransferase I K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D YPK_4147 lipopolysaccharide heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D YPK_3647 lipopolysaccharide heptosyltransferase III K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25]
C 00542 O-Antigen repeat unit biosynthesis [PATH:ypy00542]
D YPK_4033 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:ypy00541]
D YPK_2536 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YPK_2537 UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YPK_2943 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D YPK_2077 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D YPK_4028 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D YPK_4029 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D YPK_4026 TDP-4-keto-6-deoxy-D-glucose transaminase K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59]
D YPK_4027 TDP-D-fucosamine acetyltransferase K16704 rffC; dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase [EC:2.3.1.210]
D YPK_3191 glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D YPK_3190 CDP-glucose 4,6-dehydratase K01709 rfbG; CDP-glucose 4,6-dehydratase [EC:4.2.1.45]
D YPK_3189 DegT/DnrJ/EryC1/StrS aminotransferase K12452 ascC; CDP-4-dehydro-6-deoxyglucose reductase, E1 [EC:1.17.1.1]
D YPK_3192 oxidoreductase FAD/NAD(P)-binding domain protein K00523 ascD; CDP-4-dehydro-6-deoxyglucose reductase, E3 [EC:1.17.1.1]
D YPK_3188 NAD-dependent epimerase/dehydratase K12453 rfbS; CDP-paratose synthetase [EC:1.1.1.342]
D YPK_1986 mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D YPK_3178 Phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D YPK_1632 Phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D YPK_3181 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D YPK_3183 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D YPK_3182 NAD-dependent epimerase/dehydratase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D YPK_4228 UDP-N-acetylglucosamine pyrophosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D YPK_4031 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D YPK_4030 nucleotide sugar dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
C 00550 Peptidoglycan biosynthesis [PATH:ypy00550]
D YPK_0518 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D YPK_0326 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D YPK_3517 UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D YPK_3520 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D YPK_3523 UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D YPK_3516 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D YPK_3522 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D YPK_1071 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D YPK_0640 undecaprenol kinase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D YPK_2736 Undecaprenyl-diphosphatase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D YPK_3521 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D YPK_3518 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D YPK_0535 monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D YPK_0219 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D YPK_3463 penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D YPK_3054 penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D YPK_3021 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D YPK_3524 Peptidoglycan glycosyltransferase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D YPK_3024 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D YPK_2740 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D YPK_3740 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
C 00552 Teichoic acid biosynthesis [PATH:ypy00552]
D YPK_0640 undecaprenol kinase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D YPK_2736 Undecaprenyl-diphosphatase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D YPK_4033 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:ypy00543]
D YPK_4033 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D YPK_4022 glycosyl transferase, WecB/TagA/CpsF family K02852 wecG; UDP-N-acetyl-D-mannosaminouronate:lipid I N-acetyl-D-mannosaminouronosyltransferase [EC:2.4.1.180]
D YPK_4024 4-alpha-L-fucosyltransferase K12582 wecF; dTDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase [EC:2.4.1.325]
D YPK_2239 glycosyl transferase family 2 K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-]
D YPK_2238 haemin storage system, HmsS protein K11937 pgaD; biofilm PGA synthesis protein PgaD
D YPK_4136 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:ypy00730]
D YPK_0347 thiamine biosynthesis protein ThiC K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D YPK_1321 phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D YPK_0345 UBA/THIF-type NAD/FAD binding protein K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73]
D YPK_2115 aminotransferase class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YPK_1276 cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YPK_3250 thiamine biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D YPK_0342 thiazole biosynthesis protein ThiH K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19]
D YPK_3253 deoxyxylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D YPK_0343 thiazole biosynthesis family protein K03149 thiG; thiazole synthase [EC:2.8.1.10]
D YPK_0346 thiamine-phosphate pyrophosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D YPK_3255 thiamine-monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D YPK_3809 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D YPK_1946 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D YPK_1699 thiamine kinase K07251 thiK; thiamine kinase [EC:2.7.1.89]
D YPK_3194 Nucleoside-triphosphate--adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:ypy00740]
D YPK_2029 GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D YPK_3258 riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D YPK_4008 HAD-superfamily hydrolase, subfamily IA, variant 1 K20862 yigB; FMN hydrolase / 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.102 3.1.3.104]
D YPK_0649 3,4-dihydroxy-2-butanone 4-phosphate synthase K02858 ribB; 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12]
D YPK_3257 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D YPK_1857 riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D YPK_3589 riboflavin biosynthesis protein RibF K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D YPK_1730 histidine acid phosphatase K01093 appA; 4-phytase / acid phosphatase [EC:3.1.3.26 3.1.3.2]
D YPK_2452 4-hydroxyphenylacetate 3-monooxygenase, reductase subunit K00484 hpaC; flavin reductase (NADH) [EC:1.5.1.36]
D YPK_3935 oxidoreductase FAD/NAD(P)-binding domain protein K05368 fre; NAD(P)H-flavin reductase [EC:1.5.1.41]
D YPK_0655 ADP-ribose diphosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D YPK_1721 NUDIX hydrolase K12152 nudJ; phosphatase NudJ [EC:3.6.1.-]
D YPK_1536 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00750 Vitamin B6 metabolism [PATH:ypy00750]
D YPK_1880 pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
D YPK_1882 pyridoxal kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35]
D YPK_0851 D-erythrose-4-phosphate dehydrogenase K03472 epd; D-erythrose 4-phosphate dehydrogenase [EC:1.2.1.72]
D YPK_1527 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K03473 pdxB; erythronate-4-phosphate dehydrogenase [EC:1.1.1.290]
D YPK_2671 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D YPK_3572 4-hydroxythreonine-4-phosphate dehydrogenase K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262]
D YPK_1192 pyridoxal phosphate biosynthetic protein PdxJ K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2]
D YPK_3602 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
C 00760 Nicotinate and nicotinamide metabolism [PATH:ypy00760]
D YPK_1181 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D YPK_2953 quinolinate synthetase complex, A subunit K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D YPK_3497 nicotinate-nucleotide pyrophosphorylase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D YPK_2647 nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D YPK_2911 xanthosine phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D YPK_3624 purine nucleoside phosphorylase K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D YPK_3620 transcriptional regulator, XRE family K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D YPK_3428 stationary-phase survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D YPK_3000 HAD-superfamily hydrolase, subfamily IIA K02566 nagD; 5'-nucleotidase [EC:3.1.3.5]
D YPK_3018 nicotinate (nicotinamide) nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D YPK_3448 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D YPK_0349 NAD(+) diphosphatase K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]
D YPK_1261 NAD+ synthetase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
D YPK_3376 CinA domain protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D YPK_2093 Nicotinamidase K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-]
D YPK_1711 Silent information regulator protein Sir2 K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D YPK_2975 ATP-NAD/AcoX kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D YPK_4078 pyridine nucleotide-disulphide oxidoreductase dimerisation region K00322 sthA; NAD(P) transhydrogenase [EC:1.6.1.1]
D YPK_1941 NAD(P) transhydrogenase, alpha subunit K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D YPK_1942 NAD(P)(+) transhydrogenase (AB-specific) K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1]
D YPK_2771 Aldehyde Dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D YPK_0486 succinic semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00770 Pantothenate and CoA biosynthesis [PATH:ypy00770]
D YPK_3531 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YPK_1950 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YPK_4061 acetolactate synthase, large subunit, biosynthetic type K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YPK_3530 acetolactate synthase, small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D YPK_1949 amino acid-binding ACT domain protein K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D YPK_4060 acetolactate synthase isozyme II small subunit K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D YPK_4051 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D YPK_4057 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D YPK_3472 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D YPK_3248 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D YPK_3473 pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D YPK_0328 pantothenate kinase K00867 coaA; type I pantothenate kinase [EC:2.7.1.33]
D YPK_4156 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D YPK_3448 MazG family protein K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D YPK_4151 pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D YPK_3503 dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D YPK_1193 holo-acyl-carrier-protein synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D YPK_3266 (Acyl-carrier-protein) phosphodiesterase K08682 acpH; acyl carrier protein phosphodiesterase [EC:3.1.4.14]
D YPK_4059 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D YPK_3474 aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
C 00780 Biotin metabolism [PATH:ypy00780]
D YPK_2929 biotin biosynthesis protein BioC K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197]
D YPK_1520 Beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D YPK_2610 Beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D YPK_1688 3-oxoacyl-(acyl-carrier-protein) synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D YPK_2636 3-oxoacyl-(acyl-carrier-protein) synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D YPK_1686 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D YPK_2609 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D YPK_2611 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D YPK_1077 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D YPK_0165 bioH protein K02170 bioH; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85]
D YPK_2930 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D YPK_2932 adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D YPK_2928 dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D YPK_1980 dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D YPK_2931 biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6]
D YPK_0327 bifunctional BirA, biotin operon repressor/biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D YPK_1026 molybdopterin oxidoreductase K08351 bisC; biotin/methionine sulfoxide reductase [EC:1.-.-.-]
C 00785 Lipoic acid metabolism [PATH:ypy00785]
D YPK_3026 lipoate-protein ligase B K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D YPK_3027 lipoic acid synthetase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D YPK_1839 lipoyltransferase and lipoate-protein ligase K03800 lplA; lipoate---protein ligase [EC:6.3.1.20]
D YPK_3489 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPK_4081 pyridine nucleotide-disulphide oxidoreductase dimerisation region K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPK_3491 2-oxo-acid dehydrogenase E1 subunit, homodimeric type K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D YPK_3490 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D YPK_2968 2-oxoglutarate dehydrogenase, E1 subunit K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D YPK_2967 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D YPK_0869 glycine dehydrogenase K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D YPK_0867 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D YPK_0868 glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:ypy00790]
D YPK_2568 GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D YPK_1946 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D YPK_2147 NUDIX hydrolase K08310 nudB; dihydroneopterin triphosphate diphosphatase [EC:3.6.1.67]
D YPK_0639 dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D YPK_3471 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D YPK_3735 dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D YPK_3578 Dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D YPK_1532 FolC bifunctional protein K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D YPK_2029 GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D YPK_0244 glutamine amidotransferase of anthranilate synthase K01664 pabA; para-aminobenzoate synthetase component II [EC:2.6.1.85]
D YPK_2449 para-aminobenzoate synthase, subunit I K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85]
D YPK_1689 aminodeoxychorismate lyase K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
D YPK_3443 queuosine biosynthesis protein QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D YPK_3444 Radical SAM domain protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D YPK_3227 exsB protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D YPK_1057 7-cyano-7-deazaguanine reductase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D YPK_2922 molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D YPK_2921 molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D YPK_2919 molybdopterin biosynthesis MoaE protein K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D YPK_3598 molybdenum cofactor synthesis domain protein K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D YPK_2578 molybdenum cofactor synthesis domain protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D YPK_4199 molybdopterin-guanine dinucleotide biosynthesis protein A K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77]
C 00670 One carbon pool by folate [PATH:ypy00670]
D YPK_3578 Dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D YPK_3150 Methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D YPK_1265 Glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D YPK_1350 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D YPK_0357 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D YPK_0315 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D YPK_0867 glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D YPK_0368 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D YPK_1036 Thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D YPK_2080 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D YPK_4093 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D YPK_3884 methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D YPK_0860 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:ypy00860]
D YPK_1437 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D YPK_2180 glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D YPK_3459 glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D YPK_3938 Porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D YPK_4016 porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D YPK_4017 Uroporphyrinogen-III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D YPK_0351 uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D YPK_1393 Coproporphyrinogen oxidase K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3]
D YPK_4192 oxygen-independent coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3]
D YPK_3929 Protoporphyrinogen oxidase K00230 hemG; menaquinone-dependent protoporphyrinogen oxidase [EC:1.3.5.3]
D YPK_3193 Ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D YPK_4018 protein of unknown function DUF513 hemX K02496 hemX; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D YPK_3437 uroporphyrin-III C-methyltransferase K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]
D YPK_0232 uroporphyrin-III C-methyltransferase K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]
D YPK_3245 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D YPK_2038 cob(I)alamin adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D YPK_0281 bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:ypy00130]
D YPK_3864 Chorismate lyase K03181 ubiC; chorismate lyase [EC:4.1.3.40]
D YPK_3863 4-hydroxybenzoate polyprenyl transferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D YPK_3936 UbiD family decarboxylase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98]
D YPK_1536 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D YPK_0865 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family K18800 ubiI; 2-polyprenylphenol 6-hydroxylase [EC:1.14.13.240]
D YPK_2847 ubiquinone biosynthesis O-methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
D YPK_0864 2-polyprenyl-6-methoxyphenol 4-hydroxylase K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
D YPK_3945 ubiquinone/menaquinone biosynthesis methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D YPK_3004 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family K03184 ubiF; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60]
D YPK_1588 isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
D YPK_1589 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9]
D YPK_1590 alpha/beta hydrolase fold K08680 menH; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [EC:4.2.99.20]
D YPK_1592 Mandelate racemase/muconate lactonizing protein K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113]
D YPK_1593 O-succinylbenzoate-CoA ligase K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26]
D YPK_1591 naphthoate synthase K01661 menB; naphthoate synthase [EC:4.1.3.36]
D YPK_1846 thioesterase superfamily protein K19222 menI; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28]
D YPK_4105 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D YPK_2363 flavoprotein WrbA K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D YPK_1727 NmrA family protein K19267 qorB; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:ypy00900]
D YPK_3253 deoxyxylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D YPK_1070 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D YPK_3431 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D YPK_2182 4-diphosphocytidyl-2C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D YPK_3430 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D YPK_1293 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D YPK_3585 hydroxymethylbutenyl pyrophosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D YPK_2608 Hydroxymethylglutaryl-coenzyme A synthase domain protein K01641 HMGCS; hydroxymethylglutaryl-CoA synthase [EC:2.3.3.10]
D YPK_1536 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D YPK_3252 Polyprenyl synthetase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D YPK_3758 Polyprenyl synthetase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D YPK_1071 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation [PATH:ypy00907]
D YPK_3933 fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D YPK_1509 fatty acid oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D YPK_1508 acetyl-CoA C-acyltransferase FadI K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D YPK_3934 acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D YPK_3382 Transketolase domain protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D YPK_3383 Transketolase domain protein K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D YPK_0850 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:ypy00523]
D YPK_4028 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D YPK_4029 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides [PATH:ypy01053]
D YPK_1588 isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
D YPK_2495 4'-phosphopantetheinyl transferase K02362 entD; enterobactin synthetase component D [EC:6.3.2.14 2.7.8.-]
D YPK_0752 amino acid adenylation domain protein K12240 pchF; L-cysteine---[L-cysteinyl-carrier protein] ligase PchF [EC:6.2.1.69]
D YPK_0754 thiazolinyl imide reductase K12241 pchG; pyochelin biosynthesis protein PchG
C 01055 Biosynthesis of vancomycin group antibiotics
D YPK_4029 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids [PATH:ypy00946]
D YPK_3072 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D YPK_0593 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis [PATH:ypy00332]
D YPK_3288 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D YPK_3287 gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:ypy00261]
D YPK_3435 sulfate adenylyltransferase, large subunit K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D YPK_3436 sulfate adenylyltransferase, small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D YPK_0372 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D YPK_3604 aspartate kinase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D YPK_4094 aspartate kinase K12525 metL; bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3]
D YPK_0141 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D YPK_1362 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D YPK_3584 Dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:ypy00521]
D YPK_1444 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
D YPK_1152 phosphoglucomutase, alpha-D-glucose phosphate-specific K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D YPK_1273 Inositol-phosphate phosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D YPK_3046 Inositol 2-dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369]
D YPK_4028 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D YPK_4029 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D YPK_1444 glucokinase K00845 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis [PATH:ypy00525]
D YPK_4028 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D YPK_4029 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:ypy00401]
D YPK_3356 chorismate mutase K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12]
D YPK_2650 Aspartate transaminase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D YPK_2527 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D YPK_3853 Aromatic-amino-acid transaminase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D YPK_2042 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D YPK_2043 glutamine amidotransferase of anthranilate synthase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D YPK_1685 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D YPK_2602 putative acyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D YPK_1686 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D YPK_2609 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D YPK_1687 acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:ypy00999]
D YPK_0843 Methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D YPK_0321 shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D YPK_3072 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
D YPK_0593 glycoside hydrolase family 3 domain protein K05349 bglX; beta-glucosidase [EC:3.2.1.21]
C 00997 Biosynthesis of various other secondary metabolites [PATH:ypy00997]
D YPK_0783 L-lysine 6-monooxygenase (NADPH) K03897 iucD; lysine N6-hydroxylase [EC:1.14.13.59]
D YPK_0785 putative siderophore biosynthesis protein IucB K03896 iucB; acetyl CoA:N6-hydroxylysine acetyl transferase [EC:2.3.1.102]
D YPK_0786 IucA/IucC family protein K03894 iucA; N2-citryl-N6-acetyl-N6-hydroxylysine synthase [EC:6.3.2.38]
D YPK_0784 IucA/IucC family protein K03895 iucC; aerobactin synthase [EC:6.3.2.39]
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:ypy00362]
D YPK_1508 acetyl-CoA C-acyltransferase FadI K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D YPK_3934 acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D YPK_0102 4-oxalocrotonate tautomerase family enzyme K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D YPK_2194 Carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
D YPK_0448 Carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
D YPK_4120 LmbE family protein K16515 galB; 4-oxalomesaconate hydratase [EC:4.2.1.83]
D YPK_4121 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase K10218 ligK; 4-hydroxy-4-methyl-2-oxoglutarate aldolase [EC:4.1.3.17]
D YPK_1509 fatty acid oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D YPK_3933 fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
C 00627 Aminobenzoate degradation [PATH:ypy00627]
D YPK_2619 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D YPK_1536 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00364 Fluorobenzoate degradation [PATH:ypy00364]
D YPK_3951 Carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00625 Chloroalkane and chloroalkene degradation [PATH:ypy00625]
D YPK_2571 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D YPK_2072 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:ypy00361]
D YPK_3951 Carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00623 Toluene degradation [PATH:ypy00623]
D YPK_3951 Carboxymethylenebutenolidase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45]
C 00622 Xylene degradation
D YPK_0102 4-oxalocrotonate tautomerase family enzyme K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00633 Nitrotoluene degradation [PATH:ypy00633]
D YPK_1871 NADH:flavin oxidoreductase/NADH oxidase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]
D YPK_2906 NADH:flavin oxidoreductase/NADH oxidase K10680 nemA; N-ethylmaleimide reductase [EC:1.-.-.-]
C 00642 Ethylbenzene degradation
D YPK_1508 acetyl-CoA C-acyltransferase FadI K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D YPK_3934 acetyl-CoA C-acyltransferase FadA K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 00643 Styrene degradation
C 00791 Atrazine degradation
D YPK_1133 urease, alpha subunit K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D YPK_1132 urease, beta subunit K01429 ureB; urease subunit beta [EC:3.5.1.5]
D YPK_1131 urease, gamma subunit K01430 ureA; urease subunit gamma [EC:3.5.1.5]
C 00930 Caprolactam degradation [PATH:ypy00930]
D YPK_3933 fatty oxidation complex, alpha subunit FadB K01825 fadB; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8]
D YPK_1509 fatty acid oxidation complex, alpha subunit FadJ K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
D YPK_0102 4-oxalocrotonate tautomerase family enzyme K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00626 Naphthalene degradation [PATH:ypy00626]
D YPK_2571 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D YPK_2072 iron-containing alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:ypy03020]
D YPK_0340 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D YPK_0341 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D YPK_0308 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D YPK_4177 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:ypy03010]
D YPK_2668 ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D YPK_1066 ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D YPK_0289 ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D YPK_0307 ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D YPK_0300 ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D YPK_3784 ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D YPK_0276 ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D YPK_0297 ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D YPK_0525 ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D YPK_0282 ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D YPK_0306 ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D YPK_0275 ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D YPK_0305 ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D YPK_0296 ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D YPK_3727 ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D YPK_3364 ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D YPK_0292 ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D YPK_3782 ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D YPK_0287 ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D YPK_3590 ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D YPK_0636 ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D YPK_0336 ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D YPK_0286 ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D YPK_0283 ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D YPK_0284 ribosomal protein L4/L1e K02926 RP-L4; large subunit ribosomal protein L4
D YPK_0295 ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D YPK_0298 ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D YPK_0338 ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D YPK_3781 ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D YPK_0337 ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D YPK_0335 ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D YPK_0524 ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D YPK_0293 ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D YPK_0302 ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D YPK_0290 ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D YPK_0309 ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D YPK_0299 ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D YPK_3361 ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D YPK_1823 ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D YPK_3757 ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D YPK_0288 ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D YPK_0285 Ribosomal protein L25/L23 K02892 RP-L23; large subunit ribosomal protein L23
D YPK_0294 ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D YPK_2795 ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D YPK_3756 ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D YPK_4154 ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D YPK_0291 ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D YPK_0301 ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D YPK_4098 ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D YPK_3210 ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D YPK_1682 ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D YPK_4153 ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D YPK_4249 ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D YPK_1822 ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D YPK_3211 ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D YPK_0304 ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D YPK_R0085 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPK_R0089 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPK_R0090 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPK_R0091 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPK_R0086 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPK_R0087 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPK_R0088 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPK_R0098 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPK_R0094 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPK_R0097 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPK_R0096 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPK_R0095 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPK_R0092 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPK_R0093 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:ypy00970]
D YPK_R0004 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YPK_R0060 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YPK_R0047 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YPK_R0078 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YPK_R0079 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YPK_R0061 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YPK_R0042 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YPK_R0019 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YPK_R0055 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YPK_R0056 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YPK_R0057 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YPK_R0058 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YPK_R0024 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D YPK_R0026 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D YPK_R0025 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D YPK_R0013 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D YPK_R0040 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D YPK_R0014 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D YPK_R0073 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D YPK_R0030 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D YPK_R0031 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D YPK_R0033 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D YPK_R0009 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D YPK_R0038 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D YPK_R0012 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D YPK_R0039 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D YPK_R0007 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YPK_R0011 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YPK_R0048 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YPK_R0050 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YPK_R0049 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YPK_R0072 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YPK_R0043 tRNA-His K14226 tRNA-His; tRNA His
D YPK_R0003 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D YPK_R0046 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D YPK_R0059 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D YPK_R0051 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPK_R0029 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPK_R0053 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPK_R0044 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPK_R0034 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPK_R0035 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPK_R0036 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPK_R0074 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPK_R0018 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YPK_R0065 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YPK_R0064 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YPK_R0062 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YPK_R0063 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YPK_R0071 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YPK_R0066 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YPK_R0067 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YPK_R0028 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPK_R0032 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPK_R0084 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPK_R0052 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPK_R0080 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPK_R0081 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPK_R0082 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPK_R0037 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D YPK_R0083 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D YPK_R0002 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D YPK_R0045 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D YPK_R0027 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D YPK_R0070 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YPK_R0054 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YPK_R0068 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YPK_R0022 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YPK_R0023 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YPK_R0008 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D YPK_R0010 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D YPK_R0005 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D YPK_R0069 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D YPK_R0041 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D YPK_R0006 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D YPK_R0020 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D YPK_R0021 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D YPK_R0015 tRNA-Val K14237 tRNA-Val; tRNA Val
D YPK_R0017 tRNA-Val K14237 tRNA-Val; tRNA Val
D YPK_R0016 tRNA-Val K14237 tRNA-Val; tRNA Val
D YPK_R0075 tRNA-Val K14237 tRNA-Val; tRNA Val
D YPK_R0076 tRNA-Val K14237 tRNA-Val; tRNA Val
D YPK_R0077 tRNA-Val K14237 tRNA-Val; tRNA Val
D YPK_R0001 tRNA-Sec K14238 tRNA-Sec; tRNA Sec
D YPK_1437 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D YPK_2994 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D YPK_3373 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D YPK_2148 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D YPK_2648 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D YPK_0022 glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D YPK_0023 glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D YPK_1820 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D YPK_2681 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D YPK_0042 L-seryl-tRNA(Sec) selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D YPK_3152 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D YPK_2554 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D YPK_0315 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D YPK_3681 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D YPK_3015 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D YPK_3588 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D YPK_0924 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D YPK_2155 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D YPK_1091 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D YPK_1294 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D YPK_1824 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D YPK_1825 phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D YPK_1881 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D YPK_0231 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:ypy03060]
D YPK_0303 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D YPK_0333 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D YPK_3733 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D YPK_3262 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D YPK_3261 protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D YPK_3263 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D YPK_4246 60 kDa inner membrane insertion protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D YPK_3509 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D YPK_4138 protein-export protein SecB K03071 secB; preprotein translocase subunit SecB
D YPK_3510 secretion monitor family proten K13301 secM; secretion monitor
D YPK_3365 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D YPK_3979 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D YPK_3942 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA
D YPK_3941 twin-arginine translocation protein, TatB subunit K03117 tatB; sec-independent protein translocase protein TatB
D YPK_3940 Sec-independent protein translocase, TatC subunit K03118 tatC; sec-independent protein translocase protein TatC
D YPK_3028 twin-arginine translocation protein, TatA/E family subunit K03425 tatE; sec-independent protein translocase protein TatE
D YPK_1188 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D YPK_3587 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:ypy04122]
D YPK_2115 aminotransferase class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YPK_1276 cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YPK_2866 Rhodanese domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D YPK_3986 SirA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D YPK_0274 sulfur relay protein TusB/DsrH K07237 tusB; tRNA 2-thiouridine synthesizing protein B
D YPK_0273 sulfur relay protein TusC/DsrF K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D YPK_0272 sulfur relay protein TusD/DsrE K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D YPK_2618 sulfur relay protein, TusE/DsrC/DsvC family K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D YPK_1720 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D YPK_2919 molybdopterin biosynthesis MoaE protein K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D YPK_2922 molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D YPK_2920 molybdopterin converting factor, subunit 1 K03636 moaD; sulfur-carrier protein
D YPK_2579 molybdopterin synthase sulfurylase MoeB K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]
D YPK_2921 molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D YPK_3598 molybdenum cofactor synthesis domain protein K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D YPK_3250 thiamine biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D YPK_0344 thiamine biosynthesis protein ThiS K03154 thiS; sulfur carrier protein
D YPK_0345 UBA/THIF-type NAD/FAD binding protein K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73]
C 03050 Proteasome
C 03018 RNA degradation [PATH:ypy03018]
D YPK_1033 NUDIX hydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D YPK_1677 ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12]
D YPK_4036 DEAD/DEAH box helicase domain protein K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
D YPK_3446 Phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D YPK_3726 Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D YPK_2891 helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D YPK_2898 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D YPK_3791 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D YPK_3724 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D YPK_3998 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D YPK_4034 transcription termination factor Rho K03628 rho; transcription termination factor Rho
D YPK_4126 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D YPK_3594 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D YPK_3822 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D YPK_3799 RNA chaperone Hfq K03666 hfq; host factor-I protein
D YPK_1344 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D YPK_3470 poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:ypy03030]
D YPK_2439 DNA polymerase II beta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D YPK_1109 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D YPK_1081 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D YPK_3198 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D YPK_1692 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D YPK_3017 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D YPK_3635 DNA polymerase III psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D YPK_3680 DNA-directed DNA polymerase K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D YPK_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D YPK_3855 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D YPK_0635 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D YPK_3850 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D YPK_1108 Ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D YPK_1080 Ribonuclease H K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D YPK_4195 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D YPK_4175 DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D YPK_1432 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:ypy03410]
D YPK_2013 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D YPK_1173 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D YPK_0820 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D YPK_4152 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D YPK_2387 HhH-GPD family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D YPK_0021 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D YPK_2085 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D YPK_2756 apurinic endonuclease Apn1 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D YPK_4195 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D YPK_0922 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D YPK_4175 DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D YPK_1432 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:ypy03420]
D YPK_1706 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D YPK_3851 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
D YPK_2926 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
D YPK_2355 excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C
D YPK_4007 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D YPK_3145 conserved hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D YPK_4195 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D YPK_4175 DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D YPK_1432 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:ypy03430]
D YPK_3424 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D YPK_3801 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D YPK_1032 DNA mismatch repair endonuclease mutH K03573 mutH; DNA mismatch repair protein MutH
D YPK_4007 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D YPK_3145 conserved hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D YPK_2516 Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D YPK_1301 exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D YPK_3251 exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D YPK_0922 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D YPK_3850 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D YPK_1081 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D YPK_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D YPK_3198 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D YPK_3017 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D YPK_1692 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D YPK_1109 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D YPK_2439 DNA polymerase II beta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D YPK_3680 DNA-directed DNA polymerase K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D YPK_3635 DNA polymerase III psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D YPK_4175 DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D YPK_1432 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D YPK_0228 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D YPK_0181 D12 class N6 adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D YPK_2320 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D YPK_0888 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
C 03440 Homologous recombination [PATH:ypy03440]
D YPK_0922 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D YPK_3850 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D YPK_0003 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
D YPK_1191 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D YPK_3196 recombination protein RecR K06187 recR; recombination protein RecR
D YPK_3375 recA protein K03553 recA; recombination protein RecA
D YPK_4195 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D YPK_2144 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D YPK_2143 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D YPK_2145 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D YPK_4180 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D YPK_4173 putative transcriptional regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D YPK_1043 exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D YPK_1041 exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D YPK_1044 exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D YPK_1081 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D YPK_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D YPK_3198 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D YPK_3017 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D YPK_1692 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D YPK_1109 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D YPK_2439 DNA polymerase II beta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D YPK_3680 DNA-directed DNA polymerase K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D YPK_3635 DNA polymerase III psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D YPK_4099 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D YPK_3783 primosomal replication protein N K02686 priB; primosomal replication protein N
D YPK_3202 Primosomal replication priB and priC K04067 priC; primosomal replication protein N''
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1 [PATH:ypy03250]
D YPK_0242 peptidyl-prolyl cis-trans isomerase cyclophilin type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus and Lyssavirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:ypy02010]
D YPK_1408 sulfate ABC transporter, periplasmic sulfate-binding protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein
D YPK_4125 sulfate ABC transporter, periplasmic sulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D YPK_1409 sulfate ABC transporter, inner membrane subunit K02046 cysU; sulfate/thiosulfate transport system permease protein
D YPK_1410 sulfate ABC transporter, inner membrane subunit CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D YPK_1411 sulfate ABC transporter, ATPase subunit K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D YPK_0258 taurine ABC transporter, periplasmic binding protein K15551 tauA; taurine transport system substrate-binding protein
D YPK_0260 binding-protein-dependent transport systems inner membrane component K15552 tauC; taurine transport system permease protein
D YPK_0259 ABC transporter related K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7]
D YPK_0421 aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D YPK_0423 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein
D YPK_0424 ABC transporter related K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D YPK_2937 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D YPK_4123 extracellular solute-binding protein family 1 K02020 modA; molybdate transport system substrate-binding protein
D YPK_2936 molybdate ABC transporter, inner membrane subunit K02018 modB; molybdate transport system permease protein
D YPK_2935 molybdate ABC transporter, ATPase subunit K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D YPK_2940 ABC transporter related K05776 modF; molybdate transport system ATP-binding protein
D YPK_1463 extracellular solute-binding protein family 1 K02012 afuA; iron(III) transport system substrate-binding protein
D YPK_1375 extracellular solute-binding protein family 1 K02012 afuA; iron(III) transport system substrate-binding protein
D YPK_1462 binding-protein-dependent transport systems inner membrane component K02011 afuB; iron(III) transport system permease protein
D YPK_1376 binding-protein-dependent transport systems inner membrane component K02011 afuB; iron(III) transport system permease protein
D YPK_1377 ABC transporter related K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D YPK_1461 ABC transporter related K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D YPK_3542 thiamine ABC transporter, periplasmic binding protein K02064 thiB; thiamine transport system substrate-binding protein
D YPK_3543 thiamine ABC transporter, inner membrane subunit K02063 thiP; thiamine transport system permease protein
D YPK_3544 ABC transporter, ATPase subunit, ThiQ subfamily K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]
D YPK_2730 extracellular solute-binding protein family 1 K11073 potF; putrescine transport system substrate-binding protein
D YPK_2727 Ornithine carbamoyltransferase K11074 potI; putrescine transport system permease protein
D YPK_2728 binding-protein-dependent transport systems inner membrane component K11075 potH; putrescine transport system permease protein
D YPK_2729 spermidine/putrescine ABC transporter ATPase subunit K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16]
D YPK_1113 Substrate-binding region of ABC-type glycine betaine transport system K02002 proX; glycine betaine/proline transport system substrate-binding protein
D YPK_1114 binding-protein-dependent transport systems inner membrane component K02001 proW; glycine betaine/proline transport system permease protein
D YPK_1115 glycine betaine/L-proline ABC transporter, ATPase subunit K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D YPK_2865 Substrate-binding region of ABC-type glycine betaine transport system K05845 opuC; osmoprotectant transport system substrate-binding protein
D YPK_2862 binding-protein-dependent transport systems inner membrane component K05846 opuBD; osmoprotectant transport system permease protein
D YPK_2864 binding-protein-dependent transport systems inner membrane component K05846 opuBD; osmoprotectant transport system permease protein
D YPK_2863 ABC transporter related K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D YPK_0378 extracellular solute-binding protein family 1 K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D YPK_0377 Fructose-bisphosphate aldolase K10109 malF; maltose/maltodextrin transport system permease protein
D YPK_0376 binding-protein-dependent transport systems inner membrane component K10110 malG; maltose/maltodextrin transport system permease protein
D YPK_0380 ABC transporter related K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPK_1631 ABC transporter related K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPK_0967 ABC transporter related K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPK_2277 ABC transporter related K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPK_0586 ABC transporter related K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPK_3706 ABC transporter related K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPK_0968 extracellular solute-binding protein family 1 K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein
D YPK_0970 binding-protein-dependent transport systems inner membrane component K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D YPK_0971 binding-protein-dependent transport systems inner membrane component K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D YPK_1798 extracellular solute-binding protein family 1 K10192 togB; oligogalacturonide transport system substrate-binding protein
D YPK_1801 binding-protein-dependent transport systems inner membrane component K10193 togM; oligogalacturonide transport system permease protein
D YPK_1800 binding-protein-dependent transport systems inner membrane component K10194 togN; oligogalacturonide transport system permease protein
D YPK_1799 ABC transporter related K10195 togA; oligogalacturonide transport system ATP-binding protein
D YPK_0515 toluene tolerance family protein K07323 mlaC; phospholipid transport system substrate-binding protein
D YPK_0514 Mammalian cell entry related domain protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D YPK_0513 protein of unknown function DUF140 K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D YPK_0516 putative anti-sigma B factor antagonist K07122 mlaB; phospholipid transport system transporter-binding protein
D YPK_0512 ABC transporter related K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D YPK_1611 Monosaccharide-transporting ATPase K10439 rbsB; ribose transport system substrate-binding protein
D YPK_0127 periplasmic binding protein/LacI transcriptional regulator K10439 rbsB; ribose transport system substrate-binding protein
D YPK_0812 periplasmic binding protein/LacI transcriptional regulator K10439 rbsB; ribose transport system substrate-binding protein
D YPK_0814 Monosaccharide-transporting ATPase K10440 rbsC; ribose transport system permease protein
D YPK_0126 Monosaccharide-transporting ATPase K10440 rbsC; ribose transport system permease protein
D YPK_1613 Monosaccharide-transporting ATPase K10440 rbsC; ribose transport system permease protein
D YPK_0813 ABC transporter related K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D YPK_1612 ABC transporter related K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D YPK_0125 ABC transporter related K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D YPK_4210 RbsD or FucU transport K06726 rbsD; D-ribose pyranase [EC:5.4.99.62]
D YPK_1999 Monosaccharide-transporting ATPase K10537 araF; L-arabinose transport system substrate-binding protein
D YPK_1997 Monosaccharide-transporting ATPase K10538 araH; L-arabinose transport system permease protein
D YPK_1998 ABC transporter related K10539 araG; L-arabinose transport system ATP-binding protein [EC:7.5.2.12]
D YPK_4068 periplasmic binding protein/LacI transcriptional regulator K23508 ytfQ; galactofuranose transport system substrate-binding protein
D YPK_4065 Monosaccharide-transporting ATPase K23509 ytfT; galactofuranose transport system permease protein
D YPK_4066 Monosaccharide-transporting ATPase K23509 ytfT; galactofuranose transport system permease protein
D YPK_4067 ABC transporter related K10820 ytfR; galactofuranose transport system ATP-binding protein [EC:7.5.2.9]
D YPK_2566 periplasmic binding protein/LacI transcriptional regulator K10540 mglB; methyl-galactoside transport system substrate-binding protein
D YPK_2564 Monosaccharide-transporting ATPase K10541 mglC; methyl-galactoside transport system permease protein
D YPK_2565 ABC transporter related K10542 mglA; methyl-galactoside transport system ATP-binding protein [EC:7.5.2.11]
D YPK_0057 D-xylose ABC transporter, periplasmic substrate-binding protein K10543 xylF; D-xylose transport system substrate-binding protein
D YPK_0059 Monosaccharide-transporting ATPase K10544 xylH; D-xylose transport system permease protein
D YPK_0058 D-xylose ABC transporter, ATPase subunit K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10]
D YPK_1963 periplasmic binding protein/LacI transcriptional regulator K17202 eryG; erythritol transport system substrate-binding protein
D YPK_3387 periplasmic binding protein/LacI transcriptional regulator K17202 eryG; erythritol transport system substrate-binding protein
D YPK_1962 Monosaccharide-transporting ATPase K17203 eryF; erythritol transport system permease protein
D YPK_3384 Monosaccharide-transporting ATPase K17203 eryF; erythritol transport system permease protein
D YPK_1961 ABC transporter related K17204 eryE; erythritol transport system ATP-binding protein
D YPK_3385 ABC transporter related K17204 eryE; erythritol transport system ATP-binding protein
D YPK_0964 periplasmic binding protein/LacI transcriptional regulator K17205 xltC; putative xylitol transport system substrate-binding protein
D YPK_0965 Monosaccharide-transporting ATPase K17206 xltB; putative xylitol transport system permease protein
D YPK_0966 ABC transporter related K17207 xltA; putative xylitol transport system ATP-binding protein
D YPK_3045 Monosaccharide-transporting ATPase K17208 ibpA; inositol transport system substrate-binding protein
D YPK_3043 Monosaccharide-transporting ATPase K17209 iatP; inositol transport system permease protein
D YPK_3044 ABC transporter related K17210 iatA; inositol transport system ATP-binding protein
D YPK_3962 extracellular solute-binding protein family 1 K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein
D YPK_3961 binding-protein-dependent transport systems inner membrane component K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein
D YPK_3960 binding-protein-dependent transport systems inner membrane component K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein
D YPK_3959 ABC transporter related K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10]
D YPK_4231 phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D YPK_3274 phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein
D YPK_4232 phosphate ABC transporter, inner membrane subunit PstC K02037 pstC; phosphate transport system permease protein
D YPK_1345 binding-protein-dependent transport systems inner membrane component K02037 pstC; phosphate transport system permease protein
D YPK_4233 phosphate ABC transporter, inner membrane subunit PstA K02038 pstA; phosphate transport system permease protein
D YPK_1346 phosphate ABC transporter, inner membrane subunit PstA K02038 pstA; phosphate transport system permease protein
D YPK_4234 phosphate ABC transporter, ATPase subunit K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D YPK_1347 phosphate ABC transporter, ATPase subunit K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D YPK_2877 phosphonate ABC transporter, periplasmic phosphonate binding protein K02044 phnD; phosphonate transport system substrate-binding protein
D YPK_2876 phosphonate ABC transporter, inner membrane subunit K02042 phnE; phosphonate transport system permease protein
D YPK_2875 phosphonate ABC transporter, inner membrane subunit K02042 phnE; phosphonate transport system permease protein
D YPK_2878 phosphonate ABC transporter, ATPase subunit K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D YPK_1540 polar amino acid ABC transporter, inner membrane subunit K10015 hisM; histidine transport system permease protein
D YPK_1539 polar amino acid ABC transporter, inner membrane subunit K10016 hisQ; histidine transport system permease protein
D YPK_1541 ABC transporter related K10017 hisP; histidine transport system ATP-binding protein [EC:7.4.2.1]
D YPK_1538 cationic amino acid ABC transporter, periplasmic binding protein K10014 hisJ; histidine transport system substrate-binding protein
D YPK_1600 cationic amino acid ABC transporter, periplasmic binding protein K10036 glnH; glutamine transport system substrate-binding protein
D YPK_1599 polar amino acid ABC transporter, inner membrane subunit K10037 glnP; glutamine transport system permease protein
D YPK_1598 ABC transporter related K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1]
D YPK_2724 cationic amino acid ABC transporter, periplasmic binding protein K09996 artJ; arginine transport system substrate-binding protein
D YPK_2711 cationic amino acid ABC transporter, periplasmic binding protein K09997 artI; arginine transport system substrate-binding protein
D YPK_2713 polar amino acid ABC transporter, inner membrane subunit K09998 artM; arginine transport system permease protein
D YPK_2712 polar amino acid ABC transporter, inner membrane subunit K09999 artQ; arginine transport system permease protein
D YPK_2710 ABC transporter related K10000 artP; arginine transport system ATP-binding protein [EC:7.4.2.1]
D YPK_3010 extracellular solute-binding protein family 3 K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D YPK_3012 polar amino acid ABC transporter, inner membrane subunit K10002 gltK; glutamate/aspartate transport system permease protein
D YPK_3011 polar amino acid ABC transporter, inner membrane subunit K10003 gltJ; glutamate/aspartate transport system permease protein
D YPK_3013 ABC transporter related K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1]
D YPK_2376 extracellular solute-binding protein family 3 K02424 tcyA; L-cystine transport system substrate-binding protein
D YPK_2375 polar amino acid ABC transporter, inner membrane subunit K10009 tcyB; L-cystine transport system permease protein
D YPK_2374 ABC transporter related K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D YPK_3974 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D YPK_3973 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D YPK_3972 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D YPK_3971 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D YPK_3970 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D YPK_2743 NLPA lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein
D YPK_1094 lipoprotein, YaeC family K02073 metQ; D-methionine transport system substrate-binding protein
D YPK_2741 binding-protein-dependent transport systems inner membrane component K02072 metI; D-methionine transport system permease protein
D YPK_1095 binding-protein-dependent transport systems inner membrane component K02072 metI; D-methionine transport system permease protein
D YPK_1096 D-methionine ABC transporter, ATPase subunit K02071 metN; D-methionine transport system ATP-binding protein
D YPK_2742 ABC transporter related K02071 metN; D-methionine transport system ATP-binding protein
D YPK_2873 urea ABC transporter, urea binding protein K11959 urtA; urea transport system substrate-binding protein
D YPK_2872 urea ABC transporter, permease protein UrtB K11960 urtB; urea transport system permease protein
D YPK_2871 urea ABC transporter, permease protein UrtC K11961 urtC; urea transport system permease protein
D YPK_2870 urea ABC transporter, ATP-binding protein UrtD K11962 urtD; urea transport system ATP-binding protein
D YPK_2869 urea ABC transporter, ATP-binding protein UrtE K11963 urtE; urea transport system ATP-binding protein
D YPK_2927 ABC transporter related K11963 urtE; urea transport system ATP-binding protein
D YPK_2070 extracellular solute-binding protein family 5 K15580 oppA; oligopeptide transport system substrate-binding protein
D YPK_1906 extracellular solute-binding protein family 5 K15580 oppA; oligopeptide transport system substrate-binding protein
D YPK_2069 Alkaline phosphatase K15581 oppB; oligopeptide transport system permease protein
D YPK_2068 binding-protein-dependent transport systems inner membrane component K15582 oppC; oligopeptide transport system permease protein
D YPK_2067 oligopeptide/dipeptide ABC transporter, ATPase subunit K15583 oppD; oligopeptide transport system ATP-binding protein
D YPK_2066 oligopeptide/dipeptide ABC transporter, ATPase subunit K10823 oppF; oligopeptide transport system ATP-binding protein
D YPK_0088 4-phytase K12368 dppA; dipeptide transport system substrate-binding protein
D YPK_0089 Alkaline phosphatase K12369 dppB; dipeptide transport system permease protein
D YPK_0090 binding-protein-dependent transport systems inner membrane component K12370 dppC; dipeptide transport system permease protein
D YPK_0091 oligopeptide/dipeptide ABC transporter, ATPase subunit K12371 dppD; dipeptide transport system ATP-binding protein
D YPK_0092 oligopeptide/dipeptide ABC transporter, ATPase subunit K12372 dppF; dipeptide transport system ATP-binding protein
D YPK_1892 extracellular solute-binding protein family 5 K19226 sapA; cationic peptide transport system substrate-binding protein
D YPK_1891 binding-protein-dependent transport systems inner membrane component K19227 sapB; cationic peptide transport system permease protein
D YPK_1890 binding-protein-dependent transport systems inner membrane component K19228 sapC; cationic peptide transport system permease protein
D YPK_1889 oligopeptide/dipeptide ABC transporter, ATPase subunit K19229 sapD; cationic peptide transport system ATP-binding protein
D YPK_1888 ABC transporter related K19230 sapF; cationic peptide transport system ATP-binding protein
D YPK_2786 extracellular solute-binding protein family 5 K13893 yejA; microcin C transport system substrate-binding protein
D YPK_2787 binding-protein-dependent transport systems inner membrane component K13894 yejB; microcin C transport system permease protein
D YPK_2788 binding-protein-dependent transport systems inner membrane component K13895 yejE; microcin C transport system permease protein
D YPK_2789 ABC transporter related K13896 yejF; microcin C transport system ATP-binding protein
D YPK_0698 periplasmic binding protein K23185 fepB; ferric enterobactin transport system substrate-binding protein
D YPK_2540 periplasmic binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein
D YPK_2541 transport system permease protein K23186 fepD; iron-siderophore transport system permease protein
D YPK_2542 transport system permease protein K23187 fepG; iron-siderophore transport system permease protein
D YPK_2543 ABC transporter related K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-]
D YPK_3461 periplasmic binding protein K23227 fhuD; ferric hydroxamate transport system substrate-binding protein
D YPK_3460 transport system permease protein K23228 fhuB; ferric hydroxamate transport system permease protein
D YPK_3462 ABC transporter related K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16]
D YPK_3455 periplasmic binding protein K06858 btuF; vitamin B12 transport system substrate-binding protein
D YPK_1828 transport system permease protein K06073 btuC; vitamin B12 transport system permease protein
D YPK_1830 ABC transporter related K06074 btuD; vitamin B12 transport system ATP-binding protein [EC:7.6.2.8]
D YPK_2140 periplasmic solute binding protein K09815 znuA; zinc transport system substrate-binding protein
D YPK_2142 ABC-3 protein K09816 znuB; zinc transport system permease protein
D YPK_2141 ABC transporter related K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D YPK_1815 periplasmic solute binding protein K11604 sitA; manganese/iron transport system substrate-binding protein
D YPK_1813 ABC-3 protein K11605 sitC; manganese/iron transport system permease protein
D YPK_1812 ABC-3 protein K11606 sitD; manganese/iron transport system permease protein
D YPK_1814 ABC transporter related K11607 sitB; manganese/iron transport system ATP-binding protein
D YPK_3653 autoinducer AI-2 ABC transporter, periplasmic AI-2-binding protein K10555 lsrB; AI-2 transport system substrate-binding protein
D YPK_3651 Monosaccharide-transporting ATPase K10556 lsrC; AI-2 transport system permease protein
D YPK_3652 Monosaccharide-transporting ATPase K10557 lsrD; AI-2 transport system permease protein
D YPK_3650 ABC transporter related K10558 lsrA; AI-2 transport system ATP-binding protein
D YPK_1707 lipoprotein releasing system, transmembrane protein, LolC/E family K09808 lolC_E; lipoprotein-releasing system permease protein
D YPK_1709 lipoprotein releasing system, transmembrane protein LolE K09808 lolC_E; lipoprotein-releasing system permease protein
D YPK_1708 lipoprotein releasing system, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D YPK_1499 heme exporter protein CcmD K02196 ccmD; heme exporter protein D
D YPK_1498 heme exporter protein CcmC K02195 ccmC; heme exporter protein C
D YPK_1497 heme exporter protein CcmB K02194 ccmB; heme exporter protein B
D YPK_1496 heme exporter protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D YPK_3678 permease YjgP/YjgQ family protein K07091 lptF; lipopolysaccharide export system permease protein
D YPK_3677 permease YjgP/YjgQ family protein K11720 lptG; lipopolysaccharide export system permease protein
D YPK_0506 ABC transporter related K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D YPK_3977 protein insertion ABC transporter, inner membrane subunit FtsX K09811 ftsX; cell division transport system permease protein
D YPK_3978 Type II (General) Secretory Pathway (IISP) Family protein K09812 ftsE; cell division transport system ATP-binding protein
D YPK_0757 ABC transporter related K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D YPK_0758 ABC transporter related K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D YPK_2665 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D YPK_3222 ABC transporter related K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D YPK_3221 ABC transporter related K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D YPK_4110 ABC transporter related K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB
D YPK_3037 ABC transporter related K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter
D YPK_4084 type I secretion system ATPase K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D YPK_2689 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D YPK_2688 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D YPK_2695 ABC transporter related K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D YPK_1422 ABC transporter related K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
C 02060 Phosphotransferase system (PTS) [PATH:ypy02060]
D YPK_1427 phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D YPK_1428 Phosphotransferase system, phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr
D YPK_1426 PTS system, glucose subfamily, IIA subunit K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D YPK_1694 PTS system, glucose-specific IIBC subunit K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199]
D YPK_2996 PTS system, N-acetylglucosamine-specific IIBC subunit K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D YPK_0495 PTS system, trehalose-specific IIBC subunit K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201]
D YPK_0026 PTS system, mannitol-specific IIC subunit K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]
D YPK_1146 phosphotransferase system PTS lactose/cellobiose-specific IIA subunit K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D YPK_1144 phosphotransferase system lactose/cellobiose-specific IIB subunit K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D YPK_1145 PTS system, lactose/cellobiose family IIC subunit K02761 celB; cellobiose PTS system EIIC component
D YPK_2464 PTS system, mannose/fructose/sorbose family, IIB subunit K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D YPK_2465 PTS system, mannose/fructose/sorbose family, IIC subunit K02795 manY; mannose PTS system EIIC component
D YPK_2466 PTS system, mannose/fructose/sorbose family, IID subunit K02796 manZ; mannose PTS system EIID component
D YPK_0989 PTS system fructose subfamily IIA component K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-]
D YPK_0992 PTS system, mannose/fructose/sorbose family, IIB subunit K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-]
D YPK_0991 phosphotransferase system PTS sorbose-specific IIC subunit K02746 agaW; N-acetylgalactosamine PTS system EIIC component
D YPK_0990 PTS system mannose/fructose/sorbose family IID component K02747 agaE; N-acetylgalactosamine PTS system EIID component
D YPK_1548 putative PTS IIA-like nitrogen-regulatory protein PtsN K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D YPK_1547 phosphotransferase system lactose/cellobiose-specific IIB subunit K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D YPK_1546 putative sugar-specific permease SgaT/UlaA K03475 ulaA; ascorbate PTS system EIIC component
D YPK_2764 phosphocarrier, HPr family K11183 fruB; multiphosphoryl transfer protein [EC:2.7.1.202]
D YPK_2762 PTS system, fructose subfamily, IIC subunit K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D YPK_2763 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D YPK_1034 PTSINtr with GAF domain, PtsP K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
D YPK_0501 Phosphotransferase system, phosphocarrier protein HPr K08485 ptsO; phosphocarrier protein NPr
D YPK_0503 PTS IIA-like nitrogen-regulatory protein PtsN K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
C 03070 Bacterial secretion system [PATH:ypy03070]
D YPK_0654 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein
D YPK_3913 type III secretion system needle protein K03221 yscF; type III secretion protein F
D YPK_3917 type III secretion outer membrane pore, YscC/HrcC family K03219 yscC; type III secretion protein C
D YPK_3910 type III secretion apparatus lipoprotein, YscJ/HrcJ family K03222 yscJ; type III secretion protein J
D YPK_3902 Yop virulence translocation R K03226 yscR; type III secretion protein R
D YPK_3901 type III secretion protein, HrpO family K03227 yscS; type III secretion protein S
D YPK_3900 type III secretion protein SpaR/YscT/HrcT K03228 yscT; type III secretion protein T
D YPK_3899 type III secretion protein, YscU/HrpY family K03229 yscU; type III secretion protein U
D YPK_3907 type III secretion protein, HrcV family K03230 yscV; type III secretion protein V
D YPK_3906 ATPase, FliI/YscN family K03224 yscN; ATP synthase in type III secretion protein N [EC:7.4.2.8]
D YPK_3903 type III secretion system apparatus protein YscQ/HrcQ K03225 yscQ; type III secretion protein Q
D YPK_1004 general secretion pathway protein D K02453 gspD; general secretion pathway protein D
D YPK_1015 putative lipoprotein K02465 gspS; general secretion pathway protein S
D YPK_1003 general secretion pathway protein C K02452 gspC; general secretion pathway protein C
D YPK_1006 type II secretion system protein K02455 gspF; general secretion pathway protein F
D YPK_1007 general secretion pathway protein G K02456 gspG; general secretion pathway protein G
D YPK_1008 general secretion pathway protein H K02457 gspH; general secretion pathway protein H
D YPK_1009 type II secretion system protein I/J K02458 gspI; general secretion pathway protein I
D YPK_1010 general secretion pathway protein J K02459 gspJ; general secretion pathway protein J
D YPK_1011 general secretion pathway protein K K02460 gspK; general secretion pathway protein K
D YPK_1012 general secretion pathway protein L K02461 gspL; general secretion pathway protein L
D YPK_1005 type II secretion system protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D YPK_1014 Prepilin peptidase K02464 gspO; general secretion pathway protein O [EC:3.4.23.43 2.1.1.-]
D YPK_3262 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D YPK_3261 protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D YPK_0333 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D YPK_3733 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D YPK_0303 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D YPK_3263 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D YPK_4246 60 kDa inner membrane insertion protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D YPK_3509 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D YPK_3510 secretion monitor family proten K13301 secM; secretion monitor
D YPK_3979 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D YPK_4138 protein-export protein SecB K03071 secB; preprotein translocase subunit SecB
D YPK_3365 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D YPK_3942 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA
D YPK_3941 twin-arginine translocation protein, TatB subunit K03117 tatB; sec-independent protein translocase protein TatB
D YPK_3940 Sec-independent protein translocase, TatC subunit K03118 tatC; sec-independent protein translocase protein TatC
D YPK_3028 twin-arginine translocation protein, TatA/E family subunit K03425 tatE; sec-independent protein translocase protein TatE
D YPK_2157 Hemolysin activator HlyB domain protein K11017 shlB; hemolysin activation/secretion protein
D YPK_2156 filamentous haemagglutinin domain protein K11016 shlA; hemolysin
D YPK_2673 Haemagluttinin domain protein K12342 yadB_C; adhesin YadB/C
D YPK_2672 conserved hypothetical protein K12342 yadB_C; adhesin YadB/C
D YPK_0764 type VI secretion system Vgr family protein K11904 vgrG; type VI secretion system secreted protein VgrG
D YPK_0805 type VI secretion system Vgr family protein K11904 vgrG; type VI secretion system secreted protein VgrG
D YPK_1486 type VI secretion system Vgr family protein K11904 vgrG; type VI secretion system secreted protein VgrG
D YPK_0401 type VI secretion system Vgr family protein K11904 vgrG; type VI secretion system secreted protein VgrG
D YPK_3558 type VI secretion system Vgr family protein K11904 vgrG; type VI secretion system secreted protein VgrG
D YPK_0385 type VI secretion system effector, Hcp1 family K11903 hcp; type VI secretion system secreted protein Hcp
D YPK_1481 type VI secretion system effector, Hcp1 family K11903 hcp; type VI secretion system secreted protein Hcp
D YPK_0803 type VI secretion system effector, Hcp1 family K11903 hcp; type VI secretion system secreted protein Hcp
D YPK_3563 protein of unknown function DUF796 K11903 hcp; type VI secretion system secreted protein Hcp
D YPK_0392 putative lipoprotein K11906 vasD; type VI secretion system protein VasD
D YPK_2585 conserved hypothetical protein K11906 vasD; type VI secretion system protein VasD
D YPK_1482 conserved hypothetical protein K11906 vasD; type VI secretion system protein VasD
D YPK_3553 putative lipoprotein K11906 vasD; type VI secretion system protein VasD
D YPK_1485 type VI secretion protein IcmF K11891 impL; type VI secretion system protein ImpL
D YPK_0399 type VI secretion protein IcmF K11891 impL; type VI secretion system protein ImpL
D YPK_2591 ImcF domain protein K11891 impL; type VI secretion system protein ImpL
D YPK_3550 type VI secretion protein IcmF K11891 impL; type VI secretion system protein ImpL
D YPK_0394 conserved hypothetical protein K11892 impK; type VI secretion system protein ImpK
D YPK_1484 type VI secretion system OmpA/MotB family protein K11892 impK; type VI secretion system protein ImpK
D YPK_0801 conserved hypothetical protein K11892 impK; type VI secretion system protein ImpK
D YPK_3551 type IV / VI secretion system protein, DotU family K11892 impK; type VI secretion system protein ImpK
D YPK_1474 type VI secretion ATPase, ClpV1 family K11907 vasG; type VI secretion system protein VasG
D YPK_0395 type VI secretion ATPase, ClpV1 family K11907 vasG; type VI secretion system protein VasG
D YPK_3559 type VI secretion ATPase, ClpV1 family K11907 vasG; type VI secretion system protein VasG
D YPK_0804 type VI secretion ATPase, ClpV1 family K11907 vasG; type VI secretion system protein VasG
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:ypy02020]
D YPK_3275 PAS/PAC sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D YPK_3276 two component transcriptional regulator, winged helix family K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D YPK_1414 two component transcriptional regulator, winged helix family K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D YPK_1946 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D YPK_4231 phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D YPK_3274 phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein
D YPK_1714 integral membrane sensor signal transduction histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D YPK_1715 two component transcriptional regulator, winged helix family K07660 phoP; two-component system, OmpR family, response regulator PhoP
D YPK_1972 protein of unknown function DUF6 transmembrane K07790 pagO; putative membrane protein PagO
D YPK_0173 integral membrane sensor signal transduction histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D YPK_0172 two component transcriptional regulator, winged helix family K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D YPK_2839 porin Gram-negative type K09475 ompC; outer membrane pore protein C
D YPK_2649 porin Gram-negative type K09476 ompF; outer membrane pore protein F
D YPK_4133 integral membrane sensor signal transduction histidine kinase K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D YPK_4132 two component transcriptional regulator, winged helix family K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D YPK_0549 conserved hypothetical protein K25864 mzrA; modulator protein MzrA
D YPK_1936 integral membrane sensor signal transduction histidine kinase K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3]
D YPK_1937 two component transcriptional regulator, winged helix family K07661 rstA; two-component system, OmpR family, response regulator RstA
D YPK_3452 protease Do K04771 degP; serine protease Do [EC:3.4.21.107]
D YPK_0879 integral membrane sensor signal transduction histidine kinase K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3]
D YPK_0878 two component transcriptional regulator, winged helix family K07663 creB; two-component system, OmpR family, catabolic regulation response regulator CreB
D YPK_1328 integral membrane sensor signal transduction histidine kinase K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3]
D YPK_1327 two component transcriptional regulator, winged helix family K07664 baeR; two-component system, OmpR family, response regulator BaeR
D YPK_1332 efflux transporter, RND family, MFP subunit K07799 mdtA; membrane fusion protein, multidrug efflux system
D YPK_1331 acriflavin resistance protein K07788 mdtB; multidrug efflux pump
D YPK_1330 acriflavin resistance protein K07789 mdtC; multidrug efflux pump
D YPK_1329 major facilitator superfamily MFS_1 K18326 mdtD; MFS transporter, DHA2 family, multidrug resistance protein
D YPK_1382 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18324 acrD; multidrug efflux pump
D YPK_3742 integral membrane sensor signal transduction histidine kinase K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3]
D YPK_3741 two component transcriptional regulator, winged helix family K07771 basR; two-component system, OmpR family, response regulator BasR
D YPK_1831 DegT/DnrJ/EryC1/StrS aminotransferase K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87]
D YPK_2193 heavy metal sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D YPK_2192 two component heavy metal response transcriptional regulator, winged helix family K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
D YPK_1745 flagellar transcriptional activator K02403 flhD; flagellar transcriptional activator FlhD
D YPK_1746 flagellar transcriptional activator FlhC K02402 flhC; flagellar transcriptional activator FlhC
D YPK_0726 flagellin domain protein K02406 fliC; flagellin
D YPK_2381 flagellin domain protein K02406 fliC; flagellin
D YPK_0728 flagellin domain protein K02406 fliC; flagellin
D YPK_2380 RNA polymerase, sigma 28 subunit, FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA
D YPK_1747 chemotaxis protein MotA K02556 motA; chemotaxis protein MotA
D YPK_0730 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA
D YPK_1156 osmosensitive K+ channel signal transduction histidine kinase K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D YPK_1155 two component transcriptional regulator, winged helix family K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D YPK_1159 potassium-transporting ATPase, A subunit K01546 kdpA; potassium-transporting ATPase potassium-binding subunit
D YPK_1158 K+-transporting ATPase, B subunit K01547 kdpB; potassium-transporting ATPase ATP-binding subunit [EC:7.2.2.6]
D YPK_1157 potassium-transporting ATPase, C subunit K01548 kdpC; potassium-transporting ATPase KdpC subunit
D YPK_0533 multi-sensor hybrid histidine kinase K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D YPK_3606 two component transcriptional regulator, winged helix family K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA
D YPK_0001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D YPK_3359 anaerobic c4-dicarboxylate antiporter, Dcu family K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D YPK_2562 Malate dehydrogenase (oxaloacetate-decarboxylating) K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D YPK_2232 integral membrane sensor signal transduction histidine kinase K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3]
D YPK_1384 two component transcriptional regulator, LuxR family K07685 narP; two-component system, NarL family, nitrate/nitrite response regulator NarP
D YPK_3813 fumarate reductase, flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D YPK_3814 succinate dehydrogenase and fumarate reductase iron-sulfur protein K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D YPK_3815 fumarate reductase subunit C K00246 frdC; succinate dehydrogenase subunit C
D YPK_3816 fumarate reductase D subunit K00247 frdD; succinate dehydrogenase subunit D
D YPK_0083 phosphoglycerate transporter K07783 uhpC; MFS transporter, OPA family, sugar phosphate sensor protein UhpC
D YPK_0082 integral membrane sensor signal transduction histidine kinase K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D YPK_0081 two component transcriptional regulator, LuxR family K07686 uhpA; two-component system, NarL family, uhpT operon response regulator UhpA
D YPK_2499 two component transcriptional regulator, LuxR family K20264 fusR; two-component system, NarL family, response regulator FusR
D YPK_1093 putative lipoprotein K06080 rcsF; RcsF protein
D YPK_2844 integral membrane sensor hybrid histidine kinase K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]
D YPK_2842 multi-sensor signal transduction histidine kinase K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3]
D YPK_2843 two component transcriptional regulator, LuxR family K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB
D YPK_3451 multi-sensor hybrid histidine kinase K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D YPK_2356 two component transcriptional regulator, LuxR family K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D YPK_3372 carbon storage regulator, CsrA K03563 csrA; carbon storage regulator
D YPK_2269 two component transcriptional regulator, LuxR family K07688 fimZ; two-component system, NarL family, response regulator, fimbrial Z protein, FimZ
D YPK_1777 Spore coat U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D YPK_1773 Spore coat U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D YPK_1776 Spore coat U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D YPK_1778 Spore coat U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D YPK_1790 pili assembly chaperone K07346 fimC; fimbrial chaperone protein
D YPK_1775 chaperone protein K07346 fimC; fimbrial chaperone protein
D YPK_4043 pili assembly chaperone K07346 fimC; fimbrial chaperone protein
D YPK_4044 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPK_1774 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPK_1788 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPK_2757 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPK_1477 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPK_2274 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPK_0686 putative membrane protein K02279 cpaB; pilus assembly protein CpaB
D YPK_0685 type II and III secretion system protein K02280 cpaC; pilus assembly protein CpaC
D YPK_0683 conserved hypothetical protein K02282 cpaE; pilus assembly protein CpaE
D YPK_0682 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D YPK_0681 type II secretion system protein K12510 tadB; tight adherence protein B
D YPK_0680 type II secretion system protein K12511 tadC; tight adherence protein C
D YPK_1064 UTP-GlnB uridylyltransferase, GlnD K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]
D YPK_1262 nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1
D YPK_4190 signal transduction histidine kinase, nitrogen specific, NtrB K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D YPK_4191 nitrogen metabolism transcriptional regulator, NtrC, Fis Family K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D YPK_4189 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D YPK_2908 signal transduction histidine kinase, nitrogen specific, NtrB K07709 zraS; two-component system, NtrC family, sensor histidine kinase HydH [EC:2.7.13.3]
D YPK_2907 two component, sigma54 specific, transcriptional regulator, Fis family K07713 zraR; two-component system, NtrC family, response regulator HydG
D YPK_2909 conserved hypothetical protein K07803 zraP; zinc resistance-associated protein
D YPK_0098 sodium:dicarboxylate symporter K11103 dctA; aerobic C4-dicarboxylate transport protein
D YPK_0505 RNA polymerase, sigma 54 subunit, RpoN K03092 rpoN; RNA polymerase sigma-54 factor
D YPK_1257 integral membrane sensor signal transduction histidine kinase K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D YPK_1259 two component, sigma54 specific, transcriptional regulator, Fis family K07715 glrR; two-component system, NtrC family, response regulator GlrR
D YPK_1756 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D YPK_1597 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03406 mcp; methyl-accepting chemotaxis protein
D YPK_2833 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein
D YPK_1753 methyl-accepting chemotaxis sensory transducer K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D YPK_1018 methyl-accepting chemotaxis sensory transducer K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D YPK_0034 methyl-accepting chemotaxis sensory transducer K05875 tar; methyl-accepting chemotaxis protein II, aspartate sensor receptor
D YPK_1742 methyl-accepting chemotaxis sensory transducer K05876 trg; methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor
D YPK_1726 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03776 aer; aerotaxis receptor
D YPK_1750 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D YPK_1749 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D YPK_1758 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D YPK_1757 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D YPK_3918 multi-sensor hybrid histidine kinase K14978 ssrA; two-component system, LuxR family, secretion system sensor histidine kinase SsrA
D YPK_3919 two component transcriptional regulator, LuxR family K14979 ssrB; two-component system, LuxR family, secretion system response regulator SsrB
D YPK_0709 sigma54 specific transcriptional regulator, Fis family K10943 flrC; two-component system, response regulator FlrC
D YPK_3013 ABC transporter related K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1]
D YPK_3012 polar amino acid ABC transporter, inner membrane subunit K10002 gltK; glutamate/aspartate transport system permease protein
D YPK_3011 polar amino acid ABC transporter, inner membrane subunit K10003 gltJ; glutamate/aspartate transport system permease protein
D YPK_3010 extracellular solute-binding protein family 3 K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D YPK_0248 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D YPK_0823 Glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D YPK_2254 Glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D YPK_2964 cytochrome bd ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D YPK_2963 cytochrome d ubiquinol oxidase, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D YPK_2962 cyd operon protein YbgT K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7]
D YPK_2004 type I secretion system ATPase K12530 rtxB; ATP-binding cassette, subfamily B, bacterial RtxB
D YPK_2003 type I secretion membrane fusion protein, HlyD family K12532 rtxD; membrane fusion protein, RTX toxin transport system
D YPK_2002 type I secretion system ATPase K12531 rtxE; ATP-binding cassette, subfamily B, bacterial RtxE
D YPK_0654 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein
D YPK_4031 UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D YPK_4030 nucleotide sugar dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
D YPK_3639 Pectinesterase K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11]
D YPK_2427 anti-sigma-28 factor, FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
D YPK_0717 putative flagellar regulatory protein K02398 flgM; negative regulator of flagellin synthesis FlgM
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
D YPK_0811 Ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:ypy02024]
D YPK_3368 quorum-sensing autoinducer 2 (AI-2), LuxS K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D YPK_3799 RNA chaperone Hfq K03666 hfq; host factor-I protein
D YPK_2042 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D YPK_2043 glutamine amidotransferase of anthranilate synthase K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D YPK_1841 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D YPK_3357 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D YPK_2949 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D YPK_1257 integral membrane sensor signal transduction histidine kinase K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D YPK_1259 two component, sigma54 specific, transcriptional regulator, Fis family K07715 glrR; two-component system, NtrC family, response regulator GlrR
D YPK_1745 flagellar transcriptional activator K02403 flhD; flagellar transcriptional activator FlhD
D YPK_1746 flagellar transcriptional activator FlhC K02402 flhC; flagellar transcriptional activator FlhC
D YPK_1155 two component transcriptional regulator, winged helix family K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D YPK_2499 two component transcriptional regulator, LuxR family K20264 fusR; two-component system, NarL family, response regulator FusR
D YPK_3653 autoinducer AI-2 ABC transporter, periplasmic AI-2-binding protein K10555 lsrB; AI-2 transport system substrate-binding protein
D YPK_3651 Monosaccharide-transporting ATPase K10556 lsrC; AI-2 transport system permease protein
D YPK_3652 Monosaccharide-transporting ATPase K10557 lsrD; AI-2 transport system permease protein
D YPK_3650 ABC transporter related K10558 lsrA; AI-2 transport system ATP-binding protein
D YPK_3648 carbohydrate kinase FGGY K11216 lsrK; autoinducer-2 kinase [EC:2.7.1.189]
D YPK_3649 transcriptional regulator, DeoR family K11531 lsrR; lsr operon transcriptional repressor
D YPK_3654 deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase K08321 lsrF; 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase [EC:2.3.1.245]
D YPK_3655 Antibiotic biosynthesis monooxygenase K11530 lsrG; (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase [EC:5.3.1.32]
D YPK_1586 protein RhiA K20268 rhiA; rhizosphere induced protein
D YPK_1336 extracellular solute-binding protein family 1 K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D YPK_2171 extracellular solute-binding protein family 1 K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D YPK_2170 binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D YPK_1338 binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D YPK_1337 binding-protein-dependent transport systems inner membrane component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D YPK_2169 binding-protein-dependent transport systems inner membrane component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D YPK_1333 spermidine/putrescine ABC transporter ATPase subunit K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D YPK_2168 ABC transporter related K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D YPK_3974 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D YPK_3973 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D YPK_3972 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D YPK_3971 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D YPK_3970 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D YPK_1656 autoinducer synthesis protein K22956 expI; acyl homoserine lactone synthase [EC:2.3.1.184]
D YPK_0792 autoinducer synthesis protein K22956 expI; acyl homoserine lactone synthase [EC:2.3.1.184]
D YPK_1655 transcriptional regulator, LuxR family K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR
D YPK_0791 transcriptional regulator, LuxR family K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR
D YPK_0096 Pectate lyase K01728 pel; pectate lyase [EC:4.2.2.2]
D YPK_3532 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D YPK_2125 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D YPK_0248 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D YPK_3859 ferric uptake regulator, Fur family K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D YPK_2029 GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D YPK_3258 riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D YPK_3717 RND efflux system, outer membrane lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system
D YPK_2070 extracellular solute-binding protein family 5 K15580 oppA; oligopeptide transport system substrate-binding protein
D YPK_1906 extracellular solute-binding protein family 5 K15580 oppA; oligopeptide transport system substrate-binding protein
D YPK_2069 Alkaline phosphatase K15581 oppB; oligopeptide transport system permease protein
D YPK_2068 binding-protein-dependent transport systems inner membrane component K15582 oppC; oligopeptide transport system permease protein
D YPK_2067 oligopeptide/dipeptide ABC transporter, ATPase subunit K15583 oppD; oligopeptide transport system ATP-binding protein
D YPK_2066 oligopeptide/dipeptide ABC transporter, ATPase subunit K10823 oppF; oligopeptide transport system ATP-binding protein
D YPK_1125 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D YPK_3686 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D YPK_1126 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein
D YPK_3687 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein
D YPK_1127 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D YPK_3688 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D YPK_1128 ABC transporter related K02031 ddpD; peptide/nickel transport system ATP-binding protein
D YPK_3689 ABC transporter related K02031 ddpD; peptide/nickel transport system ATP-binding protein
D YPK_3690 ABC transporter related K02032 ddpF; peptide/nickel transport system ATP-binding protein
D YPK_1129 ABC transporter related K02032 ddpF; peptide/nickel transport system ATP-binding protein
D YPK_4246 60 kDa inner membrane insertion protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D YPK_0333 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D YPK_3733 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D YPK_0303 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D YPK_3263 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D YPK_3509 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D YPK_3979 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D YPK_4138 protein-export protein SecB K03071 secB; preprotein translocase subunit SecB
D YPK_3365 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:ypy02030]
D YPK_1597 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03406 mcp; methyl-accepting chemotaxis protein
D YPK_2833 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein
D YPK_1753 methyl-accepting chemotaxis sensory transducer K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D YPK_1018 methyl-accepting chemotaxis sensory transducer K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D YPK_0034 methyl-accepting chemotaxis sensory transducer K05875 tar; methyl-accepting chemotaxis protein II, aspartate sensor receptor
D YPK_1742 methyl-accepting chemotaxis sensory transducer K05876 trg; methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor
D YPK_1726 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03776 aer; aerotaxis receptor
D YPK_0378 extracellular solute-binding protein family 1 K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D YPK_1611 Monosaccharide-transporting ATPase K10439 rbsB; ribose transport system substrate-binding protein
D YPK_0127 periplasmic binding protein/LacI transcriptional regulator K10439 rbsB; ribose transport system substrate-binding protein
D YPK_0812 periplasmic binding protein/LacI transcriptional regulator K10439 rbsB; ribose transport system substrate-binding protein
D YPK_2566 periplasmic binding protein/LacI transcriptional regulator K10540 mglB; methyl-galactoside transport system substrate-binding protein
D YPK_0088 4-phytase K12368 dppA; dipeptide transport system substrate-binding protein
D YPK_1749 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D YPK_1750 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D YPK_1758 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D YPK_1759 chemotaxis phosphatase, CheZ K03414 cheZ; chemotaxis protein CheZ
D YPK_1757 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D YPK_1756 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D YPK_2392 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D YPK_0712 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D YPK_2399 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D YPK_0708 flagellar motor switch protein K02416 fliM; flagellar motor switch protein FliM
D YPK_2400 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D YPK_0707 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D YPK_1747 chemotaxis protein MotA K02556 motA; chemotaxis protein MotA
D YPK_0730 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA
D YPK_1748 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB
D YPK_0731 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB
C 02040 Flagellar assembly [PATH:ypy02040]
D YPK_2390 flagellar hook-basal body complex subunit FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D YPK_0710 flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D YPK_0711 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D YPK_2391 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D YPK_2392 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D YPK_0712 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D YPK_2393 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D YPK_0713 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D YPK_2394 ATPase, FliI/YscN family K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D YPK_0714 ATPase, FliI/YscN family K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D YPK_2395 flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ
D YPK_2396 flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK
D YPK_0729 putative flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK
D YPK_2398 flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL
D YPK_2399 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D YPK_0708 flagellar motor switch protein K02416 fliM; flagellar motor switch protein FliM
D YPK_2400 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D YPK_0707 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D YPK_2401 flagellar biosynthesis protein FliO K02418 fliO; flagellar protein FliO/FliZ
D YPK_2402 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D YPK_0706 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D YPK_2403 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D YPK_0705 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D YPK_2404 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D YPK_0704 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D YPK_2430 flagellar FlhE family protein K03516 flhE; flagellar protein FlhE
D YPK_2431 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D YPK_0702 type III secretion FHIPEP protein K02400 flhA; flagellar biosynthesis protein FlhA
D YPK_2432 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D YPK_0703 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D YPK_2426 flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D YPK_0718 flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D YPK_2425 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D YPK_0719 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D YPK_2424 flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D YPK_0720 flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D YPK_0721 flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D YPK_2423 flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D YPK_2422 flagellar basal body FlaE domain protein K02390 flgE; flagellar hook protein FlgE
D YPK_2421 flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D YPK_2420 flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D YPK_2419 flagellar L-ring protein K02393 flgH; flagellar L-ring protein FlgH
D YPK_2418 flagellar P-ring protein K02394 flgI; flagellar P-ring protein FlgI
D YPK_2417 flagellar rod assembly protein/muramidase FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ
D YPK_2416 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D YPK_2415 flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL
D YPK_0726 flagellin domain protein K02406 fliC; flagellin
D YPK_2381 flagellin domain protein K02406 fliC; flagellin
D YPK_0728 flagellin domain protein K02406 fliC; flagellin
D YPK_2382 flagellar hook-associated 2 domain protein K02407 fliD; flagellar hook-associated protein 2
D YPK_2383 flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS
D YPK_2384 flagellar export chaperone K02423 fliT; flagellar protein FliT
D YPK_1747 chemotaxis protein MotA K02556 motA; chemotaxis protein MotA
D YPK_0730 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA
D YPK_1748 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB
D YPK_0731 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB
D YPK_2427 anti-sigma-28 factor, FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
D YPK_0717 putative flagellar regulatory protein K02398 flgM; negative regulator of flagellin synthesis FlgM
D YPK_0716 conserved hypothetical protein K02399 flgN; flagellar biosynthesis protein FlgN
D YPK_2428 FlgN family protein K02399 flgN; flagellar biosynthesis protein FlgN
D YPK_2376 extracellular solute-binding protein family 3 K02424 tcyA; L-cystine transport system substrate-binding protein
D YPK_2378 integrase domain protein SAM domain protein K02425 fliZ; regulator of sigma S factor FliZ
D YPK_0634 RNA polymerase, sigma 70 subunit, RpoD K03086 rpoD; RNA polymerase primary sigma factor
D YPK_1745 flagellar transcriptional activator K02403 flhD; flagellar transcriptional activator FlhD
D YPK_1746 flagellar transcriptional activator FlhC K02402 flhC; flagellar transcriptional activator FlhC
D YPK_0505 RNA polymerase, sigma 54 subunit, RpoN K03092 rpoN; RNA polymerase sigma-54 factor
D YPK_0709 sigma54 specific transcriptional regulator, Fis family K10943 flrC; two-component system, response regulator FlrC
D YPK_2380 RNA polymerase, sigma 28 subunit, FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D YPK_3446 Phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
D YPK_0368 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
D YPK_0145 conserved repeat domain protein K13735 yeeJ; adhesin/invasin
D YPK_1315 Ig domain protein group 1 domain protein K13735 yeeJ; adhesin/invasin
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
D YPK_0145 conserved repeat domain protein K13735 yeeJ; adhesin/invasin
D YPK_1315 Ig domain protein group 1 domain protein K13735 yeeJ; adhesin/invasin
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:ypy01501]
D YPK_2649 porin Gram-negative type K09476 ompF; outer membrane pore protein F
D YPK_2839 porin Gram-negative type K09475 ompC; outer membrane pore protein C
D YPK_3239 AmpG-related permease K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D YPK_1700 glycoside hydrolase family 3 domain protein K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D YPK_2070 extracellular solute-binding protein family 5 K15580 oppA; oligopeptide transport system substrate-binding protein
D YPK_1906 extracellular solute-binding protein family 5 K15580 oppA; oligopeptide transport system substrate-binding protein
D YPK_2069 Alkaline phosphatase K15581 oppB; oligopeptide transport system permease protein
D YPK_2068 binding-protein-dependent transport systems inner membrane component K15582 oppC; oligopeptide transport system permease protein
D YPK_2067 oligopeptide/dipeptide ABC transporter, ATPase subunit K15583 oppD; oligopeptide transport system ATP-binding protein
D YPK_2066 oligopeptide/dipeptide ABC transporter, ATPase subunit K10823 oppF; oligopeptide transport system ATP-binding protein
D YPK_3719 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D YPK_3207 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D YPK_3208 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump
D YPK_3718 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump
D YPK_0739 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump
D YPK_3717 RND efflux system, outer membrane lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system
D YPK_0654 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein
D YPK_0219 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D YPK_3021 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D YPK_3524 Peptidoglycan glycosyltransferase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:ypy01502]
D YPK_3516 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D YPK_3854 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D YPK_3522 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D YPK_3521 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D YPK_3518 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:ypy01503]
D YPK_1714 integral membrane sensor signal transduction histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D YPK_1715 two component transcriptional regulator, winged helix family K07660 phoP; two-component system, OmpR family, response regulator PhoP
D YPK_0080 sulfatase K12975 eptB; KDO II ethanolaminephosphotransferase [EC:2.7.8.42]
D YPK_2476 Antimicrobial peptide resistance and lipid A acylation PagP K12973 pagP; lipid IVA palmitoyltransferase [EC:2.3.1.251]
D YPK_1831 DegT/DnrJ/EryC1/StrS aminotransferase K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87]
D YPK_1832 glycosyl transferase family 2 K10012 arnC; undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [EC:2.4.2.53]
D YPK_1833 NAD-dependent epimerase/dehydratase K10011 arnA; UDP-4-amino-4-deoxy-L-arabinose formyltransferase / UDP-glucuronic acid dehydrogenase (UDP-4-keto-hexauronic acid decarboxylating) [EC:2.1.2.13 1.1.1.305]
D YPK_1834 polysaccharide deacetylase K13014 arnD; undecaprenyl phosphate-alpha-L-ara4FN deformylase [EC:3.5.1.-]
D YPK_1835 glycosyl transferase family 39 K07264 arnT; 4-amino-4-deoxy-L-arabinose transferase [EC:2.4.2.43]
D YPK_1836 conserved hypothetical protein K12962 arnE; undecaprenyl phosphate-alpha-L-ara4N flippase subunit ArnE
D YPK_1837 conserved hypothetical protein K12963 arnF; undecaprenyl phosphate-alpha-L-ara4N flippase subunit ArnF
D YPK_3742 integral membrane sensor signal transduction histidine kinase K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3]
D YPK_3741 two component transcriptional regulator, winged helix family K07771 basR; two-component system, OmpR family, response regulator BasR
D YPK_1873 protein of unknown function DUF1705 K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D YPK_1892 extracellular solute-binding protein family 5 K19226 sapA; cationic peptide transport system substrate-binding protein
D YPK_1891 binding-protein-dependent transport systems inner membrane component K19227 sapB; cationic peptide transport system permease protein
D YPK_1890 binding-protein-dependent transport systems inner membrane component K19228 sapC; cationic peptide transport system permease protein
D YPK_1889 oligopeptide/dipeptide ABC transporter, ATPase subunit K19229 sapD; cationic peptide transport system ATP-binding protein
D YPK_1888 ABC transporter related K19230 sapF; cationic peptide transport system ATP-binding protein
D YPK_0118 Serralysin K01406 prtC; serralysin [EC:3.4.24.40]
D YPK_1090 copper resistance lipoprotein NlpE K06079 cutF; copper homeostasis protein (lipoprotein)
D YPK_4133 integral membrane sensor signal transduction histidine kinase K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D YPK_4132 two component transcriptional regulator, winged helix family K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D YPK_1046 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D YPK_3802 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D YPK_1853 ErfK/YbiS/YcfS/YnhG family protein K19236 ycfS; L,D-transpeptidase YcfS
D YPK_3452 protease Do K04771 degP; serine protease Do [EC:3.4.21.107]
D YPK_4196 DSBA oxidoreductase K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D YPK_0242 peptidyl-prolyl cis-trans isomerase cyclophilin type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D YPK_3719 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D YPK_3207 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D YPK_3208 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump
D YPK_3718 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump
D YPK_0739 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump
D YPK_0654 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein
D YPK_1078 acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:ypy01000]
C 01001 Protein kinases [BR:ypy01001]
D YPK_2488 protein of unknown function RIO1 K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D YPK_3275 PAS/PAC sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D YPK_1714 integral membrane sensor signal transduction histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D YPK_0173 integral membrane sensor signal transduction histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D YPK_1936 integral membrane sensor signal transduction histidine kinase K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3]
D YPK_4133 integral membrane sensor signal transduction histidine kinase K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D YPK_0879 integral membrane sensor signal transduction histidine kinase K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3]
D YPK_1328 integral membrane sensor signal transduction histidine kinase K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3]
D YPK_3742 integral membrane sensor signal transduction histidine kinase K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3]
D YPK_2193 heavy metal sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D YPK_1156 osmosensitive K+ channel signal transduction histidine kinase K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D YPK_0533 multi-sensor hybrid histidine kinase K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D YPK_1425 integral membrane sensor signal transduction histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D YPK_2232 integral membrane sensor signal transduction histidine kinase K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3]
D YPK_0082 integral membrane sensor signal transduction histidine kinase K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D YPK_2842 multi-sensor signal transduction histidine kinase K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3]
D YPK_2844 integral membrane sensor hybrid histidine kinase K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]
D YPK_3451 multi-sensor hybrid histidine kinase K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D YPK_0146 signal transduction histidine kinase, LytS K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D YPK_4190 signal transduction histidine kinase, nitrogen specific, NtrB K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D YPK_2908 signal transduction histidine kinase, nitrogen specific, NtrB K07709 zraS; two-component system, NtrC family, sensor histidine kinase HydH [EC:2.7.13.3]
D YPK_1257 integral membrane sensor signal transduction histidine kinase K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D YPK_1749 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D YPK_3918 multi-sensor hybrid histidine kinase K14978 ssrA; two-component system, LuxR family, secretion system sensor histidine kinase SsrA
C 01009 Protein phosphatases and associated proteins [BR:ypy01009]
D YPK_4126 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D YPK_3195 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG
D YPK_3622 phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:ypy01002]
D YPK_3587 lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
D YPK_1014 Prepilin peptidase K02464 gspO; general secretion pathway protein O [EC:3.4.23.43 2.1.1.-]
D YPK_0687 peptidase A24A prepilin type IV K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D YPK_2831 Plasminogen activator Pla K08566 pla; plasminogen activator [EC:3.4.23.48]
D YPK_1172 pyrrolidone-carboxylate peptidase K01304 pcp; pyroglutamyl-peptidase [EC:3.4.19.3]
D YPK_1303 GMP synthase, large subunit K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D YPK_4110 ABC transporter related K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB
D YPK_2784 NLP/P60 protein K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13]
D YPK_1864 NLP/P60 protein K19303 mepH; murein DD-endopeptidase [EC:3.4.-.-]
D YPK_1838 NLP/P60 protein K13695 nlpC; probable lipoprotein NlpC
D YPK_1535 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D YPK_0530 Glutamate synthase (ferredoxin) K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D YPK_4229 glucosamine--fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D YPK_3001 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D YPK_3249 DJ-1 family protein K03152 thiJ; protein deglycase [EC:3.5.1.124]
D YPK_1853 ErfK/YbiS/YcfS/YnhG family protein K19236 ycfS; L,D-transpeptidase YcfS
D YPK_2654 Peptidoglycan-binding domain 1 protein K21470 ycbB; L,D-transpeptidase YcbB
D YPK_0793 Abortive infection protein K07052 K07052; CAAX protease family protein
D YPK_2942 Abortive infection protein K07052 K07052; CAAX protease family protein
D YPK_2645 aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D YPK_0116 Oligopeptidase A K01414 prlC; oligopeptidase A [EC:3.4.24.70]
D YPK_0118 Serralysin K01406 prtC; serralysin [EC:3.4.24.40]
D YPK_1218 peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin K17733 cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]
D YPK_0476 putative phage-related protein K17733 cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]
D YPK_2334 bacteriophage P7 related protein K17733 cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]
D YPK_1042 peptidase M16 domain protein K01407 ptrA; protease III [EC:3.4.24.55]
D YPK_0100 peptidase M16 domain protein K07263 pqqL; zinc protease [EC:3.4.24.-]
D YPK_3679 Leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D YPK_1284 PepB aminopeptidase K07751 pepB; PepB aminopeptidase [EC:3.4.11.23]
D YPK_1372 succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D YPK_1712 peptidase T K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4]
D YPK_0749 peptidase T K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4]
D YPK_3295 aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D YPK_3324 amidase, hydantoinase/carbamoylase family K02083 allC; allantoate deiminase [EC:3.5.3.9]
D YPK_2139 peptidase M23B K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-]
D YPK_1065 methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D YPK_3406 methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D YPK_3932 peptidase M24 K01271 pepQ; Xaa-Pro dipeptidase [EC:3.4.13.9]
D YPK_0863 peptidase M24 K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D YPK_1935 Carboxypeptidase Taq K01299 E3.4.17.19; carboxypeptidase Taq [EC:3.4.17.19]
D YPK_3736 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D YPK_1784 HtpX domain protein K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D YPK_0849 peptidase M48 Ste24p K07387 K07387; metalloprotease [EC:3.4.24.-]
D YPK_1356 peptidase M48 Ste24p K01423 bepA; beta-barrel assembly-enhancing protease [EC:3.4.-.-]
D YPK_1073 membrane-associated zinc metalloprotease K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D YPK_1515 peptidase U6 penicillin-insensitive murein endopeptidase K07261 mepA; penicillin-insensitive murein DD-endopeptidase [EC:3.4.24.-]
D YPK_2490 protein of unknown function DUF980 K09933 mtfA; MtfA peptidase
D YPK_1928 peptidase S1 and S6 chymotrypsin/Hap K04775 ydgD; protease YdgD [EC:3.4.21.-]
D YPK_3452 protease Do K04771 degP; serine protease Do [EC:3.4.21.107]
D YPK_0520 protease Do K04772 degQ; serine protease DegQ [EC:3.4.21.-]
D YPK_0519 periplasmic serine protease DegS K04691 hhoB; serine protease DegS [EC:3.4.21.-]
D YPK_2442 Oligopeptidase B K01354 ptrB; oligopeptidase B [EC:3.4.21.83]
D YPK_3024 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D YPK_2740 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D YPK_2885 peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-]
D YPK_2836 beta-lactamase K18988 ampH; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase [EC:3.4.16.4 3.4.21.-]
D YPK_3740 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D YPK_3234 ATP-dependent Clp protease, proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D YPK_3232 ATP-dependent protease La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D YPK_2633 conserved hypothetical protein K04770 lonH; Lon-like ATP-dependent protease [EC:3.4.21.-]
D YPK_3860 transcriptional repressor, LexA family K01356 lexA; repressor LexA [EC:3.4.21.88]
D YPK_1188 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D YPK_2440 proline iminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D YPK_1783 carboxyl-terminal protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D YPK_2091 signal peptide peptidase SppA, 67K type K04773 sppA; protease IV [EC:3.4.21.-]
D YPK_2036 Peptidase S49 domain protein K04774 sohB; serine protease SohB [EC:3.4.21.-]
D YPK_0158 Rhomboid family protein K02441 glpG; rhomboid protease GlpG [EC:3.4.21.105]
D YPK_4103 20S proteasome A and B subunits K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D YPK_3269 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13]
D YPK_1325 peptidase U32 K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D YPK_3716 peptidase U32 K24845 ubiV; O2-independent ubiquinone biosynthesis protein UbiV
D YPK_3715 peptidase U32 K24844 ubiU; O2-independent ubiquinone biosynthesis protein UbiU
D YPK_0490 peptidase U62 modulator of DNA gyrase K03592 pmbA; PmbA protein
D YPK_0472 peptidase U62 modulator of DNA gyrase K03568 tldD; TldD protein
D YPK_2851 proteinase inhibitor I11 ecotin K08276 eco; ecotin
D YPK_3053 alpha-2-macroglobulin domain protein K06894 yfhM; alpha-2-macroglobulin
D YPK_3795 HflC protein K04087 hflC; modulator of FtsH protease HflC
D YPK_3796 HflK protein K04088 hflK; modulator of FtsH protease HflK
C 01003 Glycosyltransferases [BR:ypy01003]
D YPK_2212 putative glycosyl transferase K00720 UGCG; ceramide glucosyltransferase [EC:2.4.1.80]
D YPK_0150 glycogen/starch synthase, ADP-glucose type K00703 glgA; starch synthase [EC:2.4.1.21]
D YPK_0535 monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D YPK_3054 penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D YPK_3463 penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D YPK_0219 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D YPK_4022 glycosyl transferase, WecB/TagA/CpsF family K02852 wecG; UDP-N-acetyl-D-mannosaminouronate:lipid I N-acetyl-D-mannosaminouronosyltransferase [EC:2.4.1.180]
D YPK_4024 4-alpha-L-fucosyltransferase K12582 wecF; dTDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase [EC:2.4.1.325]
D YPK_4033 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D YPK_1662 glycosyl transferase family 2 K03669 mdoH; membrane glycosyltransferase [EC:2.4.1.-]
D YPK_2239 glycosyl transferase family 2 K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:ypy01005]
D YPK_1078 acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D YPK_1079 lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D YPK_3512 UDP-3-0-acyl N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D YPK_1076 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D YPK_3154 UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D YPK_2664 tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D YPK_1665 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D YPK_2138 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243]
D YPK_0430 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase K12974 lpxP; KDO2-lipid IV(A) palmitoleoyltransferase [EC:2.3.1.242]
D YPK_2783 phosphoesterase PA-phosphatase related K19803 lpxT; Kdo2-lipid A phosphotransferase [EC:2.7.4.29]
D YPK_4149 Three-deoxy-D-manno-octulosonic-acid transferase domain protein K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D YPK_1835 glycosyl transferase family 39 K07264 arnT; 4-amino-4-deoxy-L-arabinose transferase [EC:2.4.2.43]
D YPK_2476 Antimicrobial peptide resistance and lipid A acylation PagP K12973 pagP; lipid IVA palmitoyltransferase [EC:2.3.1.251]
D YPK_1873 protein of unknown function DUF1705 K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D YPK_0080 sulfatase K12975 eptB; KDO II ethanolaminephosphotransferase [EC:2.7.8.42]
D YPK_2175 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D YPK_2660 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D YPK_0509 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D YPK_0510 KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D YPK_4148 lipopolysaccharide heptosyltransferase I K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D YPK_4150 glycosyl transferase family 2 K12984 waaE; (heptosyl)LPS beta-1,4-glucosyltransferase [EC:2.4.1.-]
D YPK_4147 lipopolysaccharide heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D YPK_3647 lipopolysaccharide heptosyltransferase III K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25]
D YPK_3308 phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D YPK_1097 D,D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D YPK_0645 rfaE bifunctional protein K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D YPK_4146 ADP-L-glycero-D-manno-heptose-6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D YPK_3184 glycosyl transferase group 1 K13001 wbyK; mannosyltransferase [EC:2.4.1.-]
D YPK_4023 WzyE family protein K02853 wzyE; enterobacterial common antigen polymerase [EC:2.4.99.27]
D YPK_4033 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D YPK_3179 NAD-dependent epimerase/dehydratase K19997 gnu; GlcNAc-P-P-Und epimerase [EC:5.1.3.26]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:ypy01011]
D YPK_0518 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D YPK_0326 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D YPK_3517 UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D YPK_3520 UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D YPK_3523 UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D YPK_3516 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D YPK_3854 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D YPK_4072 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D YPK_3521 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D YPK_3518 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D YPK_0640 undecaprenol kinase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D YPK_2736 Undecaprenyl-diphosphatase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D YPK_2158 integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase
D YPK_0219 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D YPK_3463 penicillin-binding protein 1B K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D YPK_3054 penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D YPK_3021 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D YPK_3524 Peptidoglycan glycosyltransferase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D YPK_3024 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D YPK_2740 Serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D YPK_3740 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D YPK_2836 beta-lactamase K18988 ampH; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase [EC:3.4.16.4 3.4.21.-]
D YPK_2885 peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-]
D YPK_0535 monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D YPK_1853 ErfK/YbiS/YcfS/YnhG family protein K19236 ycfS; L,D-transpeptidase YcfS
D YPK_2654 Peptidoglycan-binding domain 1 protein K21470 ycbB; L,D-transpeptidase YcbB
D YPK_1515 peptidase U6 penicillin-insensitive murein endopeptidase K07261 mepA; penicillin-insensitive murein DD-endopeptidase [EC:3.4.24.-]
D YPK_1864 NLP/P60 protein K19303 mepH; murein DD-endopeptidase [EC:3.4.-.-]
D YPK_2784 NLP/P60 protein K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13]
D YPK_2139 peptidase M23B K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-]
D YPK_1218 peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin K17733 cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]
D YPK_0476 putative phage-related protein K17733 cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]
D YPK_2334 bacteriophage P7 related protein K17733 cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]
D YPK_3613 Lytic transglycosylase catalytic K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D YPK_1047 MltA domain protein K08304 mltA; peptidoglycan lytic transglycosylase A [EC:4.2.2.29]
D YPK_1464 lytic murein transglycosylase B K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D YPK_2119 lytic murein transglycosylase K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D YPK_0818 Lytic transglycosylase catalytic K08306 mltC; peptidoglycan lytic transglycosylase C [EC:4.2.2.29]
D YPK_1105 Lytic transglycosylase catalytic K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
D YPK_1816 Lytic transglycosylase catalytic K08308 mltE; peptidoglycan lytic transglycosylase E [EC:4.2.2.29]
D YPK_1252 Lytic transglycosylase catalytic K18691 mltF; peptidoglycan lytic transglycosylase F [EC:4.2.2.29]
D YPK_1690 aminodeoxychorismate lyase K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D YPK_3023 rare lipoprotein A K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D YPK_1046 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D YPK_3802 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D YPK_1794 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD K11066 amiD; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D YPK_3496 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD K03806 ampD; N-acetyl-anhydromuramoyl-L-alanine amidase [EC:3.5.1.28]
D YPK_1854 LPP repeat-containing protein K06078 lpp; murein lipoprotein
C 01004 Lipid biosynthesis proteins [BR:ypy01004]
D YPK_1685 malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D YPK_2602 putative acyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D YPK_1684 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D YPK_2217 Beta-ketoacyl-acyl-carrier-protein synthase I K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D YPK_1520 Beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D YPK_2610 Beta-ketoacyl synthase K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D YPK_1688 3-oxoacyl-(acyl-carrier-protein) synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D YPK_2636 3-oxoacyl-(acyl-carrier-protein) synthase 2 K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D YPK_1686 3-oxoacyl-(acyl-carrier-protein) reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D YPK_2609 short-chain dehydrogenase/reductase SDR K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D YPK_2634 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D YPK_2611 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D YPK_1077 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D YPK_4244 Trans-2-enoyl-CoA reductase (NAD(+)) K00209 fabV; enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+) [EC:1.3.1.9 1.3.1.44]
D YPK_3159 Lysophospholipase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D YPK_3217 acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
D YPK_2054 thioesterase superfamily protein K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
D YPK_3228 thioesterase superfamily protein K12500 tesC; thioesterase III [EC:3.1.2.-]
D YPK_3921 acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D YPK_3532 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D YPK_2125 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D YPK_3862 Glycerol-3-phosphate O-acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D YPK_1683 fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D YPK_0638 protein of unknown function DUF205 K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D YPK_0663 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins [BR:ypy01008]
D YPK_2495 4'-phosphopantetheinyl transferase K02362 entD; enterobactin synthetase component D [EC:6.3.2.14 2.7.8.-]
D YPK_0752 amino acid adenylation domain protein K12240 pchF; L-cysteine---[L-cysteinyl-carrier protein] ligase PchF [EC:6.2.1.69]
D YPK_0754 thiazolinyl imide reductase K12241 pchG; pyochelin biosynthesis protein PchG
C 01006 Prenyltransferases [BR:ypy01006]
D YPK_3252 Polyprenyl synthetase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D YPK_3758 Polyprenyl synthetase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D YPK_1071 undecaprenyl diphosphate synthase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D YPK_3800 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D YPK_4105 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D YPK_3863 4-hydroxybenzoate polyprenyl transferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D YPK_3245 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
C 01007 Amino acid related enzymes [BR:ypy01007]
D YPK_1437 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D YPK_2994 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D YPK_3469 Glutamate--tRNA ligase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D YPK_1881 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D YPK_0231 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D YPK_3152 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D YPK_2155 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D YPK_2554 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D YPK_3588 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D YPK_3681 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D YPK_3015 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D YPK_0924 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D YPK_2148 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D YPK_2648 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D YPK_1294 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D YPK_0022 glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D YPK_0023 glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D YPK_2681 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D YPK_1091 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D YPK_1820 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D YPK_3373 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D YPK_1824 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D YPK_1825 phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D YPK_2650 Aspartate transaminase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D YPK_0014 aminotransferase class I and II K00835 avtA; valine--pyruvate aminotransferase [EC:2.6.1.66]
D YPK_1558 aminotransferase class I and II K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D YPK_1446 aminotransferase class I and II K14261 alaC; alanine-synthesizing transaminase [EC:2.6.1.-]
D YPK_3853 Aromatic-amino-acid transaminase K00832 tyrB; aromatic-amino-acid transaminase [EC:2.6.1.57]
D YPK_3322 aminotransferase class I and II K14287 ybdL; methionine transaminase [EC:2.6.1.88]
D YPK_2527 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D YPK_4145 2-amino-3-ketobutyrate coenzyme A ligase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D YPK_2930 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D YPK_1968 aminotransferase class I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D YPK_1417 aminotransferase class I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D YPK_0245 succinylornithine transaminase family K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D YPK_2229 succinylornithine transaminase family K00840 astC; succinylornithine aminotransferase [EC:2.6.1.81]
D YPK_1335 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D YPK_2932 adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D YPK_3459 glutamate-1-semialdehyde-2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D YPK_4059 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D YPK_2671 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D YPK_3325 aminotransferase class V K00839 pucG; (S)-ureidoglycine---glyoxylate transaminase [EC:2.6.1.112]
D YPK_1831 DegT/DnrJ/EryC1/StrS aminotransferase K07806 arnB; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.87]
D YPK_4026 TDP-4-keto-6-deoxy-D-glucose transaminase K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:ypy00194]
D YPK_4227 ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D YPK_4226 ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D YPK_4225 ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D YPK_4224 ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D YPK_4223 ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D YPK_4222 ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D YPK_4221 ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D YPK_4220 ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D YPK_4219 ATP synthase I chain K02116 atpI; ATP synthase protein I
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:ypy03000]
D YPK_2321 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D YPK_1996 transcriptional regulator, AraC family K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein
D YPK_3841 transcriptional regulator, AraC family K02854 rhaR; AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR
D YPK_3842 transcriptional regulator, AraC family K02855 rhaS; AraC family transcriptional regulator, L-rhamnose operon regulatory protein RhaS
D YPK_1147 transcriptional regulator, AraC family K03490 chbR; AraC family transcriptional regulator, dual regulator of chb operon
D YPK_3609 transcriptional regulator, AraC family K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D YPK_4134 transcriptional regulator, AraC family K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D YPK_1052 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D YPK_4052 transcriptional regulator, LysR family K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D YPK_3953 transcriptional regulator, LysR family K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D YPK_3591 transcriptional regulator, LysR family K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA
D YPK_4079 transcriptional regulator, LysR family K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D YPK_0857 transcriptional regulator, LysR family K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D YPK_3533 transcriptional regulator, LysR family K05798 leuO; LysR family transcriptional regulator, transcriptional activator for leuABCD operon
D YPK_2032 transcriptional regulator, LysR family K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D YPK_1615 transcriptional regulator, LysR family K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA
D YPK_4119 transcriptional regulator, LysR family K16516 galR; LysR family transcriptional regulator, regulator for genes of the gallate degradation pathway
D YPK_0482 transcriptional regulator, LysR family K21698 aaeR; LysR family transcriptional regulator, transcriptional activator for aaeXAB operon
D YPK_4064 transcriptional regulator, LysR family K23773 hdfR; LysR family transcriptional regulator, flagellar master operon regulator
D YPK_2738 transcriptional regulator, DeoR family K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor
D YPK_0157 transcriptional regulator, DeoR family K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D YPK_0995 transcriptional regulator, DeoR family K02081 agaR; DeoR family transcriptional regulator, aga operon transcriptional repressor
D YPK_3397 transcriptional regulator, DeoR family K02430 fucR; DeoR family transcriptional regulator, L-fucose operon activator
D YPK_0976 transcriptional regulator, LacI family K27069 lacI; LacI family transcriptional regulator, lactose operon repressor
D YPK_0779 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D YPK_1965 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D YPK_0588 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D YPK_1614 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D YPK_0060 transcriptional regulator, AraC family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D YPK_1025 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D YPK_2491 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D YPK_4101 transcriptional regulator, LacI family K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D YPK_3529 transcriptional regulator, LacI family K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D YPK_0496 transcriptional regulator, LacI family K03485 treR; LacI family transcriptional regulator, trehalose operon repressor
D YPK_1862 transcriptional regulator, LacI family K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
D YPK_0134 transcriptional regulator, LacI family K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D YPK_1578 transcriptional regulator, LacI family K06146 idnR; LacI family transcriptional regulator, gluconate utilization system Gnt-II transcriptional activator
D YPK_3693 transcriptional regulator, GntR family K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein
D YPK_2221 transcriptional regulator, histidine utilization repressor, GntR family K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D YPK_2284 transcriptional regulator, GntR family K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D YPK_1988 transcriptional regulator, GntR family K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D YPK_2109 fatty acid metabolism transcriptional regulator FadR K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D YPK_3492 GntR domain protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D YPK_2780 GntR domain protein K13637 uxuR; GntR family transcriptional regulator, uxu operon transcriptional repressor
D YPK_0552 regulatory protein GntR HTH K19775 exuR; GntR family transcriptional regulator, hexuronate regulon transcriptional repressor
D YPK_1334 transcriptional regulator, GntR family with aminotransferase domain K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D YPK_2915 transcriptional regulator, TetR family K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D YPK_3206 transcriptional regulator, TetR family K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D YPK_4158 transcriptional regulator, TetR family K05501 slmA; TetR/AcrR family transcriptional regulator
D YPK_1872 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D YPK_4076 transcriptional regulator, TetR family K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
D YPK_2899 transcriptional regulator, TetR family K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity
D YPK_4215 transcriptional regulator, AsnC family K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D YPK_1733 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D YPK_2686 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D YPK_3223 transcriptional regulator, AsnC family K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
D YPK_1655 transcriptional regulator, LuxR family K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR
D YPK_0791 transcriptional regulator, LuxR family K19734 expR; LuxR family transcriptional regulator, quorum-sensing system regulator ExpR
D YPK_0160 ATP-dependent transcriptional regulator, MalT-like, LuxR family K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
D YPK_1876 transcriptional regulator, MarR family K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D YPK_3337 transcriptional regulator, MarR family K15974 emrR; MarR family transcriptional regulator, negative regulator of the multidrug operon emrRAB
D YPK_3164 transcriptional regulator, MerR family K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D YPK_0310 transcriptional regulator, MerR family K13638 zntR; MerR family transcriptional regulator, Zn(II)-responsive regulator of zntA
D YPK_2991 ferric uptake regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D YPK_3859 ferric uptake regulator, Fur family K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D YPK_0367 transcriptional regulator, IclR family K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D YPK_1793 transcriptional regulator, IclR family K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D YPK_0248 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D YPK_1944 transcriptional regulator, Crp/Fnr family K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D YPK_1275 transcriptional regulator, BadM/Rrf2 family K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D YPK_3792 transcriptional regulator, BadM/Rrf2 family K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
D YPK_3415 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D YPK_2135 transcriptional regulator, RpiR family K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator
D YPK_0327 bifunctional BirA, biotin operon repressor/biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D YPK_0452 transcriptional regulator, Fis family K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D YPK_3612 Trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor
D YPK_0217 putative transcriptional regulator, Nlp K07724 ner; Ner family transcriptional regulator
D YPK_3760 putative transcriptional regulator, Nlp K07724 ner; Ner family transcriptional regulator
D YPK_3055 putative transcriptional regulator, Nlp K07724 ner; Ner family transcriptional regulator
D YPK_3540 extracellular solute-binding protein family 5 K11925 sgrR; SgrR family transcriptional regulator
D YPK_3620 transcriptional regulator, XRE family K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D YPK_1975 GAF modulated sigma54 specific transcriptional regulator, Fis family K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D YPK_0113 transcriptional regulator, CdaR K02647 cdaR; carbohydrate diacid regulator
D YPK_2939 transcriptional regulator, ModE family K02019 modE; molybdate transport system regulatory protein
D YPK_1211 transcriptional regulator, XRE family K07729 K07729; putative transcriptional regulator
D YPK_4096 methionine repressor, MetJ K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
D YPK_2369 delta-1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D YPK_3237 BolA family protein K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D YPK_3937 transcriptional acivator RfaH K05785 rfaH; transcriptional antiterminator RfaH
D YPK_3762 arginine repressor, ArgR K03402 argR; transcriptional regulator of arginine metabolism
D YPK_2999 ROK family protein K02565 nagC; N-acetylglucosamine repressor
D YPK_1981 ROK family protein K15545 mlc; transcriptional regulator of PTS gene
D YPK_0028 mannitol repressor, MtlR K02562 mtlR; mannitol operon repressor
D YPK_1902 transcriptional regulator, TyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D YPK_1361 glycine cleavage system regulatory protein K03567 gcvR; glycine cleavage system transcriptional repressor
D YPK_1893 sigma54 specific transcriptional regulator, Fis family K03974 pspF; psp operon transcriptional activator
D YPK_1896 phage shock protein C, PspC K03973 pspC; phage shock protein C
D YPK_3649 transcriptional regulator, DeoR family K11531 lsrR; lsr operon transcriptional repressor
D YPK_0493 GreA/GreB family elongation factor K06140 rnk; regulator of nucleoside diphosphate kinase
D YPK_0948 phage transcriptional regulator, AlpA K07733 alpA; prophage regulatory protein
D YPK_3140 phage transcriptional regulator, AlpA K07733 alpA; prophage regulatory protein
D YPK_3752 phage transcriptional regulator, AlpA K07733 alpA; prophage regulatory protein
D YPK_0837 protein of unknown function DUF179 K07735 algH; putative transcriptional regulator
D YPK_3468 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor
D YPK_3259 ATP-cone domain protein K07738 nrdR; transcriptional repressor NrdR
D YPK_3289 transcriptional regulator Crl K11926 crl; sigma factor-binding protein Crl
D YPK_3527 MraZ protein K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:ypy03021]
D YPK_0308 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D YPK_0340 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D YPK_0341 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D YPK_4177 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D YPK_0634 RNA polymerase, sigma 70 subunit, RpoD K03086 rpoD; RNA polymerase primary sigma factor
D YPK_3425 RNA polymerase, sigma 70 subunit, RpoD family K03087 rpoS; RNA polymerase nonessential primary-like sigma factor
D YPK_1182 RNA polymerase, sigma-24 subunit, ECF subfamily K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D YPK_3976 RNA polymerase, sigma 32 subunit, RpoH K03089 rpoH; RNA polymerase sigma-32 factor
D YPK_0505 RNA polymerase, sigma 54 subunit, RpoN K03092 rpoN; RNA polymerase sigma-54 factor
D YPK_2380 RNA polymerase, sigma 28 subunit, FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA
D YPK_3547 SNF2-related protein K03580 hepA; ATP-dependent helicase HepA [EC:5.6.2.-]
D YPK_3731 NusA antitermination factor K02600 nusA; transcription termination/antitermination protein NusA
D YPK_3256 NusB antitermination factor K03625 nusB; transcription antitermination protein NusB
D YPK_0334 NusG antitermination factor K02601 nusG; transcription termination/antitermination protein NusG
D YPK_0526 Glutathione S-transferase domain K03599 sspA; stringent starvation protein A
D YPK_0527 Stringent starvation protein B K03600 sspB; stringent starvation protein B
D YPK_1183 anti sigma-E protein, RseA K03597 rseA; sigma-E factor negative regulatory protein RseA
D YPK_1184 sigma E regulatory protein, MucB/RseB K03598 rseB; sigma-E factor negative regulatory protein RseB
D YPK_1185 positive regulator of sigma E, RseC/MucC K03803 rseC; sigma-E factor negative regulatory protein RseC
D YPK_3468 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor
D YPK_3739 transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D YPK_0171 transcription elongation factor GreB K04760 greB; transcription elongation factor GreB
D YPK_4034 transcription termination factor Rho K03628 rho; transcription termination factor Rho
D YPK_1086 transcriptional antiterminator, Rof K19000 rof; Rho-binding antiterminator
C 03019 Messenger RNA biogenesis [BR:ypy03019]
D YPK_1677 ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12]
D YPK_0469 ribonuclease, Rne/Rng family K08301 rng; ribonuclease G [EC:3.1.26.-]
D YPK_1189 Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D YPK_3791 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D YPK_3808 Exonuclease RNase T and DNA polymerase III K13288 orn; oligoribonuclease [EC:3.1.-.-]
D YPK_4036 DEAD/DEAH box helicase domain protein K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
D YPK_2891 helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D YPK_2898 DEAD/DEAH box helicase domain protein K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D YPK_3724 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D YPK_3998 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D YPK_3446 Phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D YPK_3726 Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D YPK_4034 transcription termination factor Rho K03628 rho; transcription termination factor Rho
D YPK_4126 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D YPK_3594 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D YPK_3822 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D YPK_3799 RNA chaperone Hfq K03666 hfq; host factor-I protein
D YPK_1344 Polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D YPK_3470 poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D YPK_1033 NUDIX hydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D YPK_3372 carbon storage regulator, CsrA K03563 csrA; carbon storage regulator
D YPK_0464 diguanylate cyclase/phosphodiesterase K18765 csrD; RNase E specificity factor CsrD
D YPK_4106 regulator of ribonuclease activity A K02553 rraA; regulator of ribonuclease activity A
D YPK_3683 protein of unknown function DUF1260 K09893 rraB; regulator of ribonuclease activity B
D YPK_0502 conserved hypothetical protein K06958 rapZ; RNase adapter protein RapZ
D YPK_1925 ATP-dependent helicase HrpA K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
D YPK_3464 ATP-dependent helicase HrpB K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6]
C 03041 Spliceosome
C 03011 Ribosome [BR:ypy03011]
D YPK_2668 ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D YPK_1066 ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D YPK_0289 ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D YPK_0307 ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D YPK_0300 ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D YPK_3784 ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D YPK_0276 ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D YPK_0297 ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D YPK_0525 ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D YPK_0282 ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D YPK_0306 ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D YPK_0275 ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D YPK_0305 ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D YPK_0296 ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D YPK_3727 ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D YPK_3364 ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D YPK_0292 ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D YPK_3782 ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D YPK_0287 ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D YPK_3590 ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D YPK_0636 ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D YPK_0336 ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D YPK_0286 ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D YPK_0283 ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D YPK_0284 ribosomal protein L4/L1e K02926 RP-L4; large subunit ribosomal protein L4
D YPK_0295 ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D YPK_0298 ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D YPK_3781 ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D YPK_0337 ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D YPK_0335 ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D YPK_0338 ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D YPK_0524 ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D YPK_0293 ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D YPK_0302 ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D YPK_0290 ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D YPK_0309 ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D YPK_0299 ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D YPK_3361 ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D YPK_1823 ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D YPK_3757 ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D YPK_0288 ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D YPK_0285 Ribosomal protein L25/L23 K02892 RP-L23; large subunit ribosomal protein L23
D YPK_0294 ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D YPK_3756 ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D YPK_4154 ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D YPK_0291 ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D YPK_0301 ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D YPK_4098 ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D YPK_3210 ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D YPK_1682 ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D YPK_4153 ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D YPK_4249 ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D YPK_1822 ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D YPK_3211 ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D YPK_0304 ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D YPK_2795 ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D YPK_R0085 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPK_R0089 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPK_R0090 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPK_R0091 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPK_R0086 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPK_R0087 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPK_R0088 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPK_R0098 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPK_R0094 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPK_R0097 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPK_R0096 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPK_R0095 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPK_R0092 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPK_R0093 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:ypy03009]
D YPK_1189 Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D YPK_2488 protein of unknown function RIO1 K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1]
D YPK_3808 Exonuclease RNase T and DNA polymerase III K13288 orn; oligoribonuclease [EC:3.1.-.-]
D YPK_1190 GTP-binding protein Era K03595 era; GTPase
D YPK_3743 GTP-binding protein Obg/CgtA K03979 obgE; GTPase [EC:3.6.5.-]
D YPK_3468 transcriptional regulator, TraR/DksA family K06204 dksA; RNA polymerase-binding transcription factor
D YPK_3731 NusA antitermination factor K02600 nusA; transcription termination/antitermination protein NusA
D YPK_3256 NusB antitermination factor K03625 nusB; transcription antitermination protein NusB
D YPK_0334 NusG antitermination factor K02601 nusG; transcription termination/antitermination protein NusG
D YPK_2793 pseudouridine synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D YPK_3573 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D YPK_0314 sun protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D YPK_3636 rRNA (guanine-N(2)-)-methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D YPK_3980 methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D YPK_0839 protein of unknown function DUF558 K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D YPK_4218 methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D YPK_3526 S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D YPK_0540 Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D YPK_0117 protein of unknown function DUF548 K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
D YPK_2472 rRNA (guanine-N(1)-)-methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D YPK_3790 RNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D YPK_3737 ribosomal RNA large subunit methyltransferase J K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D YPK_1596 protein of unknown function DUF890 K06970 rlmF; 23S rRNA (adenine1618-N6)-methyltransferase [EC:2.1.1.181]
D YPK_0562 rRNA (guanine-N(2)-)-methyltransferase K11391 rlmG; 23S rRNA (guanine1835-N2)-methyltransferase [EC:2.1.1.174]
D YPK_3020 protein of unknown function DUF163 K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D YPK_2620 PUA domain containing protein K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
D YPK_0115 protein of unknown function DUF519 K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D YPK_2641 putative RNA methylase K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D YPK_1054 conserved hypothetical protein K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D YPK_1290 radical SAM enzyme, Cfr family K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D YPK_2725 23S rRNA (uracil-5-)-methyltransferase RumB K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189]
D YPK_3568 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D YPK_2039 pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D YPK_1678 pseudouridine synthase, RluA family K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D YPK_3351 pseudouridine synthase, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D YPK_1722 pseudouridine synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D YPK_3069 pseudouridine synthase K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
D YPK_3340 tRNA/rRNA methyltransferase (SpoU) K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
D YPK_3634 ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D YPK_2161 GCN5-related N-acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
D YPK_3363 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
D YPK_2675 protein of unknown function DUF181 K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
D YPK_0454 ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D YPK_1513 protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
D YPK_3067 Cupin 4 family protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
D YPK_1713 Cupin 4 family protein K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
D YPK_1677 ribonuclease, Rne/Rng family K08300 rne; ribonuclease E [EC:3.1.26.12]
D YPK_0469 ribonuclease, Rne/Rng family K08301 rng; ribonuclease G [EC:3.1.26.-]
D YPK_0836 Holliday junction resolvase YqgF K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D YPK_2446 DEAD/DEAH box helicase domain protein K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6]
D YPK_3724 DEAD/DEAH box helicase domain protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D YPK_1179 DEAD/DEAH box helicase domain protein K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7]
D YPK_3809 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D YPK_1297 small GTP-binding protein K03977 engA; GTPase
D YPK_3797 GTP-binding proten HflX K03665 hflX; GTPase
D YPK_0320 SUA5/yciO/yrdC domain K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D YPK_4178 (p)ppGpp synthetase I, SpoT/RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D YPK_3729 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D YPK_3732 protein of unknown function DUF150 K09748 rimP; ribosome maturation factor RimP
D YPK_3151 conserved hypothetical protein K14761 rlbA; ribosome-associated protein
D YPK_3019 iojap-like protein K09710 ybeB; ribosome-associated protein
D YPK_3007 protein of unknown function UPF0054 K07042 ybeY; probable rRNA maturation factor
D YPK_3738 protein of unknown function UPF0044 K07574 yhbY; RNA-binding protein
D YPK_0030 conserved hypothetical protein K14762 yibL; ribosome-associated protein
D YPK_0489 protein of unknown function DUF615 K09889 yjgA; ribosome-associated protein
D YPK_0504 sigma 54 modulation protein/ribosomal protein S30EA K05808 hpf; ribosome hibernation promoting factor
D YPK_3353 sigma 54 modulation protein/ribosomal protein S30EA K05809 raiA; ribosome-associated inhibitor A
D YPK_2187 GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase
D YPK_1681 protein of unknown function DUF177 K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:ypy03016]
D YPK_0641 polynucleotide adenylyltransferase/metal dependent phosphohydrolase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D YPK_1437 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D YPK_1091 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D YPK_3588 isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D YPK_3015 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D YPK_2554 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D YPK_2994 glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D YPK_2155 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D YPK_0924 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D YPK_2148 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D YPK_3373 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D YPK_2648 asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D YPK_1820 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D YPK_2681 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D YPK_3152 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D YPK_3681 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D YPK_1294 histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D YPK_1824 phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D YPK_1825 phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D YPK_1881 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D YPK_0231 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D YPK_4185 D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D YPK_1696 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D YPK_0821 tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D YPK_1092 protein of unknown function UPF0066 K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-]
D YPK_1529 tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D YPK_3728 tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D YPK_3429 tRNA pseudouridine synthase D TruD K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D YPK_2115 aminotransferase class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YPK_1276 cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YPK_0320 SUA5/yciO/yrdC domain K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D YPK_3800 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D YPK_4245 tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D YPK_4217 glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D YPK_2089 selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D YPK_3775 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D YPK_4248 ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D YPK_1868 ribonuclease T K03683 rnt; ribonuclease T [EC:3.1.13.-]
D YPK_4160 ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D YPK_2016 exoribonuclease II K01147 rnb; exoribonuclease II [EC:3.1.13.1]
D YPK_2124 ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5]
D YPK_3466 2'-5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
D YPK_3618 ABC transporter related K06020 ettA; energy-dependent translational throttle protein EttA
D YPK_0022 glycyl-tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D YPK_0023 glycyl-tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D YPK_3469 Glutamate--tRNA ligase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
D YPK_3167 ybaK/ebsC protein K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D YPK_1251 CMP/dCMP deaminase zinc-binding K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D YPK_3858 TIM-barrel protein, yjbN family K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
D YPK_0453 TIM-barrel protein, nifR3 family K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D YPK_2887 dihydrouridine synthase DuS K05541 dusC; tRNA-dihydrouridine synthase C [EC:1.-.-.-]
D YPK_3005 tRNA-i(6)A37 thiotransferase enzyme MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D YPK_2151 methyltransferase K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
D YPK_2152 methyltransferase K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-]
D YPK_2658 Methyltransferase type 11 K06219 smtA; tRNA 5-carboxymethoxyuridine methyltransferase [EC:2.1.1.-]
D YPK_4074 tRNA (uracil-5-)-methyltransferase K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35]
D YPK_3362 tRNA (guanine-N1)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D YPK_3340 tRNA/rRNA methyltransferase (SpoU) K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
D YPK_4179 tRNA guanosine-2'-O-methyltransferase K00556 trmH; tRNA (guanosine-2'-O-)-methyltransferase [EC:2.1.1.34]
D YPK_1274 RNA methyltransferase, TrmH family, group 1 K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200]
D YPK_4135 RNA methyltransferase, TrmH family, group 2 K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D YPK_1180 methyltransferase small K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223]
D YPK_1060 pseudouridine synthase K06175 truC; tRNA pseudouridine65 synthase [EC:5.4.99.26]
D YPK_3568 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D YPK_1720 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D YPK_1912 PP-loop domain protein K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D YPK_3986 SirA family protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D YPK_0274 sulfur relay protein TusB/DsrH K07237 tusB; tRNA 2-thiouridine synthesizing protein B
D YPK_0273 sulfur relay protein TusC/DsrF K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D YPK_0272 sulfur relay protein TusD/DsrE K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D YPK_2618 sulfur relay protein, TusE/DsrC/DsvC family K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D YPK_1278 iron-sulfur cluster assembly protein IscA K13628 iscA; iron-sulfur cluster assembly protein
D YPK_0875 conserved hypothetical protein K06980 ygfZ; tRNA-modifying protein YgfZ
D YPK_1519 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
D YPK_3265 S-adenosylmethionine--tRNA-ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D YPK_3227 exsB protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D YPK_3443 queuosine biosynthesis protein QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D YPK_3444 Radical SAM domain protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D YPK_1057 7-cyano-7-deazaguanine reductase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D YPK_3805 iron-sulfur cluster binding protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D YPK_3264 queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D YPK_3250 thiamine biosynthesis/tRNA modification protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D YPK_1084 tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D YPK_1368 protein of unknown function DUF699 ATPase putative K06957 tmcA; tRNA(Met) cytidine acetyltransferase [EC:2.3.1.193]
D YPK_2127 peptidase M22 glycoprotease K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D YPK_0637 metalloendopeptidase, glycoprotease family K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D YPK_3803 protein of unknown function UPF0079 K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D YPK_1048 UBA/THIF-type NAD/FAD binding protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D YPK_3791 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D YPK_3726 Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:ypy03012]
D YPK_2023 translation initiation factor SUI1 K03113 EIF1; translation initiation factor 1
D YPK_3730 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D YPK_1821 initiation factor 3 K02520 infC; translation initiation factor IF-3
D YPK_0264 ABC transporter related K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D YPK_1067 translation elongation factor Ts K02357 tsf; elongation factor Ts
D YPK_0332 translation elongation factor Tu K02358 tuf; elongation factor Tu
D YPK_0278 translation elongation factor Tu K02358 tuf; elongation factor Tu
D YPK_0277 translation elongation factor G K02355 fusA; elongation factor G
D YPK_0043 selenocysteine-specific translation elongation factor K03833 selB; selenocysteine-specific elongation factor
D YPK_2179 peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D YPK_1069 ribosome recycling factor K02838 frr; ribosome recycling factor
D YPK_2178 protein-(glutamine-N5) methyltransferase, release factor-specific K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D YPK_2186 Aminoacyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D YPK_2691 translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D YPK_2777 elongation factor P-like protein YeiP K02356 efp; elongation factor P
D YPK_3818 translation elongation factor P K02356 efp; elongation factor P
D YPK_3812 lysyl-tRNA synthetase-related protein GenX K04568 epmA; elongation factor P--(R)-beta-lysine ligase [EC:6.3.1.-]
D YPK_3819 lysine 2,3-aminomutase YodO family protein K19810 epmB; L-lysine 2,3-aminomutase [EC:5.4.3.-]
D YPK_1517 protein of unknown function DUF462 K09906 epmC; elongation factor P hydroxylase [EC:1.14.-.-]
D YPK_0923 peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
D YPK_3633 peptide chain release factor 3 K02837 prfC; peptide chain release factor 3
D YPK_0311 protein of unknown function DUF331 K09890 arfA; alternative ribosome-rescue factor
D YPK_1089 Class I peptide chain release factor K15034 yaeJ; ribosome-associated protein
C 03110 Chaperones and folding catalysts [BR:ypy03110]
D YPK_2692 ATP-dependent Clp protease, ATP-binding subunit clpA K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA
D YPK_3349 ATP-dependent chaperone ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D YPK_3233 ATP-dependent Clp protease, ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D YPK_4104 heat shock protein HslVU, ATPase subunit HslU K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D YPK_3195 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG
D YPK_3594 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D YPK_1280 Fe-S protein assembly chaperone HscA K04044 hscA; molecular chaperone HscA
D YPK_1340 putative chaperone protein K04046 yegD; hypothetical chaperone protein
D YPK_3822 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D YPK_3593 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D YPK_3569 heat shock protein DnaJ domain protein K05801 djlA; DnaJ like chaperone protein
D YPK_1279 co-chaperone Hsc20 K04082 hscB; molecular chaperone HscB
D YPK_0175 Hsp33 protein K04083 hslO; molecular chaperone Hsp33
D YPK_2974 GrpE protein K03687 GRPE; molecular chaperone GrpE
D YPK_0011 heat shock protein Hsp20 K04080 ibpA; molecular chaperone IbpA
D YPK_0012 heat shock protein Hsp20 K04081 ibpB; molecular chaperone IbpB
D YPK_0176 RNA-binding S4 domain protein K04762 hslR; ribosome-associated heat shock protein Hsp15
D YPK_3823 chaperonin Cpn10 K04078 groES; chaperonin GroES
D YPK_3452 protease Do K04771 degP; serine protease Do [EC:3.4.21.107]
D YPK_3736 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D YPK_4220 ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D YPK_1790 pili assembly chaperone K07346 fimC; fimbrial chaperone protein
D YPK_1775 chaperone protein K07346 fimC; fimbrial chaperone protein
D YPK_4043 pili assembly chaperone K07346 fimC; fimbrial chaperone protein
D YPK_4138 protein-export protein SecB K03071 secB; preprotein translocase subunit SecB
D YPK_4131 protein of unknown function Spy-related K06006 cpxP; periplasmic protein CpxP/Spy
D YPK_2909 conserved hypothetical protein K07803 zraP; zinc resistance-associated protein
D YPK_1140 conserved hypothetical protein K19778 hdeB; acid stress chaperone HdeB
D YPK_3391 cytoplasmic chaperone TorD family protein K23349 dmsD; putative dimethyl sulfoxide reductase chaperone
D YPK_1453 cytoplasmic chaperone TorD family protein K23349 dmsD; putative dimethyl sulfoxide reductase chaperone
D YPK_2992 Beta-N-acetylhexosaminidase K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D YPK_0242 peptidyl-prolyl cis-trans isomerase cyclophilin type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D YPK_3153 peptidyl-prolyl cis-trans isomerase cyclophilin type K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D YPK_3230 PpiC-type peptidyl-prolyl cis-trans isomerase K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D YPK_0270 Peptidylprolyl isomerase K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]
D YPK_3778 peptidylprolyl isomerase FKBP-type K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8]
D YPK_3586 peptidylprolyl isomerase FKBP-type K03774 slpA; FKBP-type peptidyl-prolyl cis-trans isomerase SlpA [EC:5.2.1.8]
D YPK_0268 peptidylprolyl isomerase FKBP-type K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D YPK_4040 PpiC-type peptidyl-prolyl cis-trans isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
D YPK_3571 SurA domain K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D YPK_4035 thioredoxin K03671 TXN; thioredoxin
D YPK_3341 thioredoxin K03672 trxC; thioredoxin 2 [EC:1.8.1.8]
D YPK_3161 Thioredoxin domain K05838 ybbN; putative thioredoxin
D YPK_2733 glutaredoxin, GrxA family K03674 grxA; glutaredoxin 1
D YPK_4139 glutaredoxin 3 K03676 grxC; glutaredoxin 3
D YPK_1866 glutaredoxin-like protein K07390 grxD; monothiol glutaredoxin
D YPK_4196 DSBA oxidoreductase K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D YPK_2111 Disulphide bond formation protein DsbB K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9]
D YPK_0921 thiol:disulfide interchange protein DsbC K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D YPK_3828 Protein-disulfide reductase K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16]
D YPK_1502 periplasmic protein thiol--disulphide oxidoreductase DsbE K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE
C 04131 Membrane trafficking [BR:ypy04131]
D YPK_1289 Nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D YPK_2096 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D YPK_2948 phosphoglycerate mutase 1 family K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D YPK_1855 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D YPK_2136 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D YPK_3195 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG
C 04121 Ubiquitin system [BR:ypy04121]
C 03051 Proteasome [BR:ypy03051]
D YPK_3195 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:ypy03032]
D YPK_1108 Ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D YPK_2321 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D YPK_0354 histone family protein DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha
D YPK_3231 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D YPK_1826 integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha
D YPK_2667 integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta
D YPK_0001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D YPK_3855 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D YPK_0635 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D YPK_3850 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D YPK_1081 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D YPK_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D YPK_3680 DNA-directed DNA polymerase K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D YPK_3017 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D YPK_1692 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D YPK_1109 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D YPK_3198 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D YPK_3635 DNA polymerase III psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D YPK_2439 DNA polymerase II beta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D YPK_1080 Ribonuclease H K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D YPK_4195 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D YPK_4175 DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D YPK_1432 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D YPK_1984 DNA replication terminus site-binding protein K10748 tus; DNA replication terminus site-binding protein
D YPK_0228 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D YPK_0181 D12 class N6 adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D YPK_2320 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D YPK_0888 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D YPK_1151 SeqA family protein K03645 seqA; negative modulator of initiation of replication
D YPK_1354 DnaA regulatory inactivator Hda K10763 hda; DnaA-homolog protein
D YPK_2846 DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D YPK_0004 DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D YPK_0662 DNA topoisomerase IV, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D YPK_0659 DNA topoisomerase IV, B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D YPK_2033 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D YPK_2088 DNA topoisomerase III K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:ypy03036]
D YPK_2321 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D YPK_1189 Ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D YPK_2074 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS
D YPK_0354 histone family protein DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha
D YPK_3231 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D YPK_1826 integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha
D YPK_2667 integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta
D YPK_3609 transcriptional regulator, AraC family K05804 rob; AraC family transcriptional regulator, mar-sox-rob regulon activator
D YPK_0001 chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D YPK_0537 phosphoheptose isomerase K12961 diaA; DnaA initiator-associating protein
D YPK_2621 hemimethylated DNA binding protein K11940 hspQ; heat shock protein HspQ
D YPK_1602 Ferritin Dps family protein K04047 dps; starvation-inducible DNA-binding protein
D YPK_0452 transcriptional regulator, Fis family K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D YPK_3799 RNA chaperone Hfq K03666 hfq; host factor-I protein
D YPK_0857 transcriptional regulator, LysR family K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D YPK_1733 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D YPK_2686 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D YPK_2796 37kDa nucleoid-associated protein K06899 ndpA; nucleoid-associated protein
D YPK_2655 chromosome segregation and condensation protein MukB domain protein K03632 mukB; chromosome partition protein MukB
D YPK_2656 chromosome segregation and condensation protein MukE K03804 mukE; chromosome partition protein MukE
D YPK_2657 chromosome segregation and condensation protein MukF K03633 mukF; chromosome partition protein MukF
D YPK_3514 cell division protein FtsA K03590 ftsA; cell division protein FtsA
D YPK_3432 Septum formation initiator K05589 ftsB; cell division protein FtsB
D YPK_3978 Type II (General) Secretory Pathway (IISP) Family protein K09812 ftsE; cell division transport system ATP-binding protein
D YPK_3524 Peptidoglycan glycosyltransferase K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D YPK_2685 cell divisionFtsK/SpoIIIE K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D YPK_3525 cell division protein FtsL K03586 ftsL; cell division protein FtsL
D YPK_4102 cell division protein FtsN K03591 ftsN; cell division protein FtsN
D YPK_3515 Polypeptide-transport-associated domain protein FtsQ-type K03589 ftsQ; cell division protein FtsQ
D YPK_3519 cell division protein FtsW K03588 ftsW; cell division protein FtsW
D YPK_3977 protein insertion ABC transporter, inner membrane subunit FtsX K09811 ftsX; cell division transport system permease protein
D YPK_3513 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D YPK_1431 cell division protein ZipA K03528 zipA; cell division protein ZipA
D YPK_0861 protein of unknown function DUF710 K09888 zapA; cell division protein ZapA
D YPK_4111 protein of unknown function DUF904 K09892 zapB; cell division protein ZapB
D YPK_2643 protein of unknown function DUF1379 K18657 zapC; cell division protein ZapC
D YPK_3504 protein of unknown function DUF1342 K18778 zapD; cell division protein ZapD
D YPK_0523 AFG1-family ATPase K06916 zapE; cell division protein ZapE
D YPK_3779 Opacity-associated protein A K07269 ytfB; cell division protein YtfB
D YPK_1046 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D YPK_3802 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D YPK_3719 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D YPK_3207 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D YPK_2121 septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D YPK_2122 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D YPK_2123 cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor
D YPK_2629 cell division inhibitor SulA K13053 sulA; cell division inhibitor SulA
D YPK_4158 transcriptional regulator, TetR family K05501 slmA; TetR/AcrR family transcriptional regulator
D YPK_1151 SeqA family protein K03645 seqA; negative modulator of initiation of replication
D YPK_0465 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins
D YPK_0466 rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC
D YPK_0467 rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD
D YPK_3022 rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA
D YPK_0662 DNA topoisomerase IV, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D YPK_0659 DNA topoisomerase IV, B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D YPK_4217 glucose inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D YPK_4218 methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D YPK_4009 tyrosine recombinase XerC K03733 xerC; integrase/recombinase XerC
D YPK_0920 tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD
D YPK_2553 putative ATPase Mrp K03593 mrp; ATP-binding protein involved in chromosome partitioning
D YPK_0608 filamentation induced by cAMP protein Fic K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D YPK_4194 GTP-binding protein HSR1-related K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:ypy03400]
D YPK_1945 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D YPK_1163 Deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D YPK_1173 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D YPK_0820 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D YPK_2013 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D YPK_3508 mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D YPK_4157 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D YPK_4134 transcriptional regulator, AraC family K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D YPK_2387 HhH-GPD family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D YPK_0021 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D YPK_4152 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D YPK_2085 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D YPK_2756 apurinic endonuclease Apn1 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D YPK_0352 Deoxyribonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
D YPK_0922 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D YPK_4175 DNA ligase (NAD(+)) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D YPK_1432 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D YPK_4195 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D YPK_3851 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
D YPK_2926 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
D YPK_2355 excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C
D YPK_4007 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D YPK_3145 conserved hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D YPK_0340 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D YPK_0341 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D YPK_0308 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D YPK_4177 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D YPK_1706 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D YPK_3424 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D YPK_3801 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D YPK_1032 DNA mismatch repair endonuclease mutH K03573 mutH; DNA mismatch repair protein MutH
D YPK_2516 Exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D YPK_1301 exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D YPK_3251 exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D YPK_1081 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D YPK_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D YPK_3680 DNA-directed DNA polymerase K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D YPK_3017 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D YPK_1692 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D YPK_1109 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D YPK_3198 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D YPK_3635 DNA polymerase III psi subunit K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D YPK_2439 DNA polymerase II beta subunit K02345 holE; DNA polymerase III subunit theta [EC:2.7.7.7]
D YPK_3850 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D YPK_0228 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D YPK_0181 D12 class N6 adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D YPK_2320 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D YPK_0888 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D YPK_1043 exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D YPK_1041 exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D YPK_1044 exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D YPK_3375 recA protein K03553 recA; recombination protein RecA
D YPK_2144 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D YPK_2143 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D YPK_2145 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D YPK_4099 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D YPK_3783 primosomal replication protein N K02686 priB; primosomal replication protein N
D YPK_3202 Primosomal replication priB and priC K04067 priC; primosomal replication protein N''
D YPK_3278 SMC domain protein K03546 sbcC; DNA repair protein SbcC/Rad50
D YPK_3277 nuclease SbcCD, D subunit K03547 sbcD; DNA repair protein SbcD/Mre11
D YPK_3621 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D YPK_0003 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
D YPK_4180 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D YPK_4173 putative transcriptional regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D YPK_1191 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D YPK_3196 recombination protein RecR K06187 recR; recombination protein RecR
D YPK_2976 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D YPK_3280 putative exonuclease RdgC K03554 rdgC; recombination associated protein RdgC
D YPK_1644 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1
D YPK_2794 type III restriction protein res subunit K19789 radD; DNA repair protein RadD
D YPK_0243 protein of unknown function DUF853 NPT hydrolase putative K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
D YPK_2846 DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D YPK_0004 DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D YPK_2033 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D YPK_0354 histone family protein DNA-binding protein K05787 hupA; DNA-binding protein HU-alpha
D YPK_3231 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D YPK_0452 transcriptional regulator, Fis family K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D YPK_1826 integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha
D YPK_2667 integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta
D YPK_3998 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D YPK_2074 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS
D YPK_3296 DNA-directed DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D YPK_3860 transcriptional repressor, LexA family K01356 lexA; repressor LexA [EC:3.4.21.88]
D YPK_3546 DNA polymerase B region K02336 polB; DNA polymerase II [EC:2.7.7.7]
D YPK_1674 DinI family protein K12149 dinI; DNA-damage-inducible protein I
D YPK_3109 DinI family protein K12149 dinI; DNA-damage-inducible protein I
D YPK_3374 regulatory protein RecX K03565 recX; regulatory protein
D YPK_4038 ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D YPK_2625 UvrD/REP helicase K03658 helD; DNA helicase IV [EC:5.6.2.4]
D YPK_2856 helicase c2 K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D YPK_2128 helicase c2 K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D YPK_1117 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D YPK_2848 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D YPK_1116 Ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D YPK_2849 Ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:ypy03029]
D YPK_3730 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D YPK_1821 initiation factor 3 K02520 infC; translation initiation factor IF-3
D YPK_1067 translation elongation factor Ts K02357 tsf; elongation factor Ts
D YPK_0332 translation elongation factor Tu K02358 tuf; elongation factor Tu
D YPK_0278 translation elongation factor Tu K02358 tuf; elongation factor Tu
D YPK_0277 translation elongation factor G K02355 fusA; elongation factor G
D YPK_1190 GTP-binding protein Era K03595 era; GTPase
D YPK_1881 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D YPK_3015 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D YPK_2148 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D YPK_2155 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D YPK_3850 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D YPK_1074 outer membrane protein assembly complex, YaeT protein K07277 SAM50; outer membrane protein insertion porin family
D YPK_3594 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D YPK_2974 GrpE protein K03687 GRPE; molecular chaperone GrpE
D YPK_3822 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D YPK_3823 chaperonin Cpn10 K04078 groES; chaperonin GroES
D YPK_3593 chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D YPK_2115 aminotransferase class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YPK_1276 cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YPK_1279 co-chaperone Hsc20 K04082 hscB; molecular chaperone HscB
D YPK_1866 glutaredoxin-like protein K07390 grxD; monothiol glutaredoxin
D YPK_2553 putative ATPase Mrp K03593 mrp; ATP-binding protein involved in chromosome partitioning
D YPK_3245 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D YPK_4246 60 kDa inner membrane insertion protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D YPK_3195 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:ypy02000]
D YPK_0757 ABC transporter related K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D YPK_0758 ABC transporter related K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D YPK_2665 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D YPK_3222 ABC transporter related K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D YPK_3221 ABC transporter related K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D YPK_2004 type I secretion system ATPase K12530 rtxB; ATP-binding cassette, subfamily B, bacterial RtxB
D YPK_2002 type I secretion system ATPase K12531 rtxE; ATP-binding cassette, subfamily B, bacterial RtxE
D YPK_4110 ABC transporter related K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB
D YPK_3037 ABC transporter related K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter
D YPK_2487 ABC transporter related K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D YPK_4084 type I secretion system ATPase K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D YPK_2689 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D YPK_2688 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D YPK_2695 ABC transporter related K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D YPK_1422 ABC transporter related K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D YPK_2640 ABC transporter related K15738 uup; ABC transport system ATP-binding/permease protein
D YPK_1408 sulfate ABC transporter, periplasmic sulfate-binding protein K02048 cysP; sulfate/thiosulfate transport system substrate-binding protein
D YPK_4125 sulfate ABC transporter, periplasmic sulfate-binding protein K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D YPK_1409 sulfate ABC transporter, inner membrane subunit K02046 cysU; sulfate/thiosulfate transport system permease protein
D YPK_1410 sulfate ABC transporter, inner membrane subunit CysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D YPK_1411 sulfate ABC transporter, ATPase subunit K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D YPK_2937 molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D YPK_4123 extracellular solute-binding protein family 1 K02020 modA; molybdate transport system substrate-binding protein
D YPK_2936 molybdate ABC transporter, inner membrane subunit K02018 modB; molybdate transport system permease protein
D YPK_2935 molybdate ABC transporter, ATPase subunit K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D YPK_2940 ABC transporter related K05776 modF; molybdate transport system ATP-binding protein
D YPK_0258 taurine ABC transporter, periplasmic binding protein K15551 tauA; taurine transport system substrate-binding protein
D YPK_0260 binding-protein-dependent transport systems inner membrane component K15552 tauC; taurine transport system permease protein
D YPK_0259 ABC transporter related K10831 tauB; taurine transport system ATP-binding protein [EC:7.6.2.7]
D YPK_0421 aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein
D YPK_0423 binding-protein-dependent transport systems inner membrane component K15554 ssuC; sulfonate transport system permease protein
D YPK_0424 ABC transporter related K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14]
D YPK_1463 extracellular solute-binding protein family 1 K02012 afuA; iron(III) transport system substrate-binding protein
D YPK_1375 extracellular solute-binding protein family 1 K02012 afuA; iron(III) transport system substrate-binding protein
D YPK_1462 binding-protein-dependent transport systems inner membrane component K02011 afuB; iron(III) transport system permease protein
D YPK_1376 binding-protein-dependent transport systems inner membrane component K02011 afuB; iron(III) transport system permease protein
D YPK_1377 ABC transporter related K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D YPK_1461 ABC transporter related K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D YPK_3542 thiamine ABC transporter, periplasmic binding protein K02064 thiB; thiamine transport system substrate-binding protein
D YPK_3543 thiamine ABC transporter, inner membrane subunit K02063 thiP; thiamine transport system permease protein
D YPK_3544 ABC transporter, ATPase subunit, ThiQ subfamily K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]
D YPK_2730 extracellular solute-binding protein family 1 K11073 potF; putrescine transport system substrate-binding protein
D YPK_2727 Ornithine carbamoyltransferase K11074 potI; putrescine transport system permease protein
D YPK_2728 binding-protein-dependent transport systems inner membrane component K11075 potH; putrescine transport system permease protein
D YPK_2729 spermidine/putrescine ABC transporter ATPase subunit K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16]
D YPK_1336 extracellular solute-binding protein family 1 K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D YPK_2171 extracellular solute-binding protein family 1 K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D YPK_2170 binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D YPK_1338 binding-protein-dependent transport systems inner membrane component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D YPK_1337 binding-protein-dependent transport systems inner membrane component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D YPK_2169 binding-protein-dependent transport systems inner membrane component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D YPK_1333 spermidine/putrescine ABC transporter ATPase subunit K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D YPK_2168 ABC transporter related K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D YPK_1113 Substrate-binding region of ABC-type glycine betaine transport system K02002 proX; glycine betaine/proline transport system substrate-binding protein
D YPK_1114 binding-protein-dependent transport systems inner membrane component K02001 proW; glycine betaine/proline transport system permease protein
D YPK_1115 glycine betaine/L-proline ABC transporter, ATPase subunit K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D YPK_2865 Substrate-binding region of ABC-type glycine betaine transport system K05845 opuC; osmoprotectant transport system substrate-binding protein
D YPK_2862 binding-protein-dependent transport systems inner membrane component K05846 opuBD; osmoprotectant transport system permease protein
D YPK_2864 binding-protein-dependent transport systems inner membrane component K05846 opuBD; osmoprotectant transport system permease protein
D YPK_2863 ABC transporter related K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D YPK_1958 ABC transporter, periplasmic substrate-binding protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D YPK_1957 binding-protein-dependent transport systems inner membrane component K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D YPK_1956 ABC transporter related K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D YPK_0378 extracellular solute-binding protein family 1 K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D YPK_0377 Fructose-bisphosphate aldolase K10109 malF; maltose/maltodextrin transport system permease protein
D YPK_0376 binding-protein-dependent transport systems inner membrane component K10110 malG; maltose/maltodextrin transport system permease protein
D YPK_0380 ABC transporter related K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPK_1631 ABC transporter related K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPK_0967 ABC transporter related K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPK_2277 ABC transporter related K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPK_0586 ABC transporter related K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPK_3706 ABC transporter related K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPK_0968 extracellular solute-binding protein family 1 K15770 cycB; arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding protein
D YPK_0970 binding-protein-dependent transport systems inner membrane component K15771 ganP; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D YPK_0971 binding-protein-dependent transport systems inner membrane component K15772 ganQ; arabinogalactan oligomer / maltooligosaccharide transport system permease protein
D YPK_1999 Monosaccharide-transporting ATPase K10537 araF; L-arabinose transport system substrate-binding protein
D YPK_1997 Monosaccharide-transporting ATPase K10538 araH; L-arabinose transport system permease protein
D YPK_1998 ABC transporter related K10539 araG; L-arabinose transport system ATP-binding protein [EC:7.5.2.12]
D YPK_1798 extracellular solute-binding protein family 1 K10192 togB; oligogalacturonide transport system substrate-binding protein
D YPK_1801 binding-protein-dependent transport systems inner membrane component K10193 togM; oligogalacturonide transport system permease protein
D YPK_1800 binding-protein-dependent transport systems inner membrane component K10194 togN; oligogalacturonide transport system permease protein
D YPK_1799 ABC transporter related K10195 togA; oligogalacturonide transport system ATP-binding protein
D YPK_2566 periplasmic binding protein/LacI transcriptional regulator K10540 mglB; methyl-galactoside transport system substrate-binding protein
D YPK_2564 Monosaccharide-transporting ATPase K10541 mglC; methyl-galactoside transport system permease protein
D YPK_2565 ABC transporter related K10542 mglA; methyl-galactoside transport system ATP-binding protein [EC:7.5.2.11]
D YPK_0057 D-xylose ABC transporter, periplasmic substrate-binding protein K10543 xylF; D-xylose transport system substrate-binding protein
D YPK_0059 Monosaccharide-transporting ATPase K10544 xylH; D-xylose transport system permease protein
D YPK_0058 D-xylose ABC transporter, ATPase subunit K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10]
D YPK_1611 Monosaccharide-transporting ATPase K10439 rbsB; ribose transport system substrate-binding protein
D YPK_0127 periplasmic binding protein/LacI transcriptional regulator K10439 rbsB; ribose transport system substrate-binding protein
D YPK_0812 periplasmic binding protein/LacI transcriptional regulator K10439 rbsB; ribose transport system substrate-binding protein
D YPK_0814 Monosaccharide-transporting ATPase K10440 rbsC; ribose transport system permease protein
D YPK_0126 Monosaccharide-transporting ATPase K10440 rbsC; ribose transport system permease protein
D YPK_1613 Monosaccharide-transporting ATPase K10440 rbsC; ribose transport system permease protein
D YPK_0813 ABC transporter related K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D YPK_1612 ABC transporter related K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D YPK_0125 ABC transporter related K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D YPK_4068 periplasmic binding protein/LacI transcriptional regulator K23508 ytfQ; galactofuranose transport system substrate-binding protein
D YPK_4065 Monosaccharide-transporting ATPase K23509 ytfT; galactofuranose transport system permease protein
D YPK_4066 Monosaccharide-transporting ATPase K23509 ytfT; galactofuranose transport system permease protein
D YPK_4067 ABC transporter related K10820 ytfR; galactofuranose transport system ATP-binding protein [EC:7.5.2.9]
D YPK_1963 periplasmic binding protein/LacI transcriptional regulator K17202 eryG; erythritol transport system substrate-binding protein
D YPK_3387 periplasmic binding protein/LacI transcriptional regulator K17202 eryG; erythritol transport system substrate-binding protein
D YPK_1962 Monosaccharide-transporting ATPase K17203 eryF; erythritol transport system permease protein
D YPK_3384 Monosaccharide-transporting ATPase K17203 eryF; erythritol transport system permease protein
D YPK_1961 ABC transporter related K17204 eryE; erythritol transport system ATP-binding protein
D YPK_3385 ABC transporter related K17204 eryE; erythritol transport system ATP-binding protein
D YPK_0964 periplasmic binding protein/LacI transcriptional regulator K17205 xltC; putative xylitol transport system substrate-binding protein
D YPK_0965 Monosaccharide-transporting ATPase K17206 xltB; putative xylitol transport system permease protein
D YPK_0966 ABC transporter related K17207 xltA; putative xylitol transport system ATP-binding protein
D YPK_3045 Monosaccharide-transporting ATPase K17208 ibpA; inositol transport system substrate-binding protein
D YPK_3043 Monosaccharide-transporting ATPase K17209 iatP; inositol transport system permease protein
D YPK_3044 ABC transporter related K17210 iatA; inositol transport system ATP-binding protein
D YPK_3962 extracellular solute-binding protein family 1 K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein
D YPK_3961 binding-protein-dependent transport systems inner membrane component K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein
D YPK_3960 binding-protein-dependent transport systems inner membrane component K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein
D YPK_3959 ABC transporter related K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10]
D YPK_3653 autoinducer AI-2 ABC transporter, periplasmic AI-2-binding protein K10555 lsrB; AI-2 transport system substrate-binding protein
D YPK_3651 Monosaccharide-transporting ATPase K10556 lsrC; AI-2 transport system permease protein
D YPK_3652 Monosaccharide-transporting ATPase K10557 lsrD; AI-2 transport system permease protein
D YPK_3650 ABC transporter related K10558 lsrA; AI-2 transport system ATP-binding protein
D YPK_0514 Mammalian cell entry related domain protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D YPK_0513 protein of unknown function DUF140 K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D YPK_0512 ABC transporter related K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D YPK_0515 toluene tolerance family protein K07323 mlaC; phospholipid transport system substrate-binding protein
D YPK_0516 putative anti-sigma B factor antagonist K07122 mlaB; phospholipid transport system transporter-binding protein
D YPK_0589 extracellular solute-binding protein family 1 K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D YPK_2280 extracellular solute-binding protein family 1 K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D YPK_3709 extracellular solute-binding protein family 1 K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D YPK_1634 extracellular solute-binding protein family 1 K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D YPK_0590 binding-protein-dependent transport systems inner membrane component K02025 ABC.MS.P; multiple sugar transport system permease protein
D YPK_1635 binding-protein-dependent transport systems inner membrane component K02025 ABC.MS.P; multiple sugar transport system permease protein
D YPK_2279 binding-protein-dependent transport systems inner membrane component K02025 ABC.MS.P; multiple sugar transport system permease protein
D YPK_3708 binding-protein-dependent transport systems inner membrane component K02025 ABC.MS.P; multiple sugar transport system permease protein
D YPK_0591 binding-protein-dependent transport systems inner membrane component K02026 ABC.MS.P1; multiple sugar transport system permease protein
D YPK_1636 binding-protein-dependent transport systems inner membrane component K02026 ABC.MS.P1; multiple sugar transport system permease protein
D YPK_2278 binding-protein-dependent transport systems inner membrane component K02026 ABC.MS.P1; multiple sugar transport system permease protein
D YPK_3707 binding-protein-dependent transport systems inner membrane component K02026 ABC.MS.P1; multiple sugar transport system permease protein
D YPK_0431 carbohydrate uptake (CUT2 family) ABC transporter, periplasmic carbohydrate-binding protein K02058 ABC.SS.S; simple sugar transport system substrate-binding protein
D YPK_2410 putative sugar-binding periplasmic protein K02058 ABC.SS.S; simple sugar transport system substrate-binding protein
D YPK_3398 carbohydrate uptake ABC transporter 2 (CUT2) family, periplasmic carbohydrate-binding protein K02058 ABC.SS.S; simple sugar transport system substrate-binding protein
D YPK_2768 ABC transporter, periplasmic sugar-binding protein K02058 ABC.SS.S; simple sugar transport system substrate-binding protein
D YPK_2556 putative sugar ABC transporter K02058 ABC.SS.S; simple sugar transport system substrate-binding protein
D YPK_2408 Monosaccharide-transporting ATPase K02057 ABC.SS.P; simple sugar transport system permease protein
D YPK_0433 Monosaccharide-transporting ATPase K02057 ABC.SS.P; simple sugar transport system permease protein
D YPK_0434 Monosaccharide-transporting ATPase K02057 ABC.SS.P; simple sugar transport system permease protein
D YPK_2411 Monosaccharide-transporting ATPase K02057 ABC.SS.P; simple sugar transport system permease protein
D YPK_3400 Monosaccharide-transporting ATPase K02057 ABC.SS.P; simple sugar transport system permease protein
D YPK_3401 Monosaccharide-transporting ATPase K02057 ABC.SS.P; simple sugar transport system permease protein
D YPK_2766 Monosaccharide-transporting ATPase K02057 ABC.SS.P; simple sugar transport system permease protein
D YPK_2521 Monosaccharide-transporting ATPase K02057 ABC.SS.P; simple sugar transport system permease protein
D YPK_0416 RbsD or FucU transport K02057 ABC.SS.P; simple sugar transport system permease protein
D YPK_2409 ABC transporter related K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPK_0432 ABC transporter related K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPK_3399 ABC transporter related K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPK_2767 ABC transporter related K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPK_2520 ABC transporter related K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-]
D YPK_4231 phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D YPK_3274 phosphate binding protein K02040 pstS; phosphate transport system substrate-binding protein
D YPK_4232 phosphate ABC transporter, inner membrane subunit PstC K02037 pstC; phosphate transport system permease protein
D YPK_1345 binding-protein-dependent transport systems inner membrane component K02037 pstC; phosphate transport system permease protein
D YPK_4233 phosphate ABC transporter, inner membrane subunit PstA K02038 pstA; phosphate transport system permease protein
D YPK_1346 phosphate ABC transporter, inner membrane subunit PstA K02038 pstA; phosphate transport system permease protein
D YPK_4234 phosphate ABC transporter, ATPase subunit K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D YPK_1347 phosphate ABC transporter, ATPase subunit K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D YPK_2877 phosphonate ABC transporter, periplasmic phosphonate binding protein K02044 phnD; phosphonate transport system substrate-binding protein
D YPK_2876 phosphonate ABC transporter, inner membrane subunit K02042 phnE; phosphonate transport system permease protein
D YPK_2875 phosphonate ABC transporter, inner membrane subunit K02042 phnE; phosphonate transport system permease protein
D YPK_2878 phosphonate ABC transporter, ATPase subunit K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D YPK_1540 polar amino acid ABC transporter, inner membrane subunit K10015 hisM; histidine transport system permease protein
D YPK_1539 polar amino acid ABC transporter, inner membrane subunit K10016 hisQ; histidine transport system permease protein
D YPK_1541 ABC transporter related K10017 hisP; histidine transport system ATP-binding protein [EC:7.4.2.1]
D YPK_1538 cationic amino acid ABC transporter, periplasmic binding protein K10014 hisJ; histidine transport system substrate-binding protein
D YPK_1600 cationic amino acid ABC transporter, periplasmic binding protein K10036 glnH; glutamine transport system substrate-binding protein
D YPK_1599 polar amino acid ABC transporter, inner membrane subunit K10037 glnP; glutamine transport system permease protein
D YPK_1598 ABC transporter related K10038 glnQ; glutamine transport system ATP-binding protein [EC:7.4.2.1]
D YPK_2724 cationic amino acid ABC transporter, periplasmic binding protein K09996 artJ; arginine transport system substrate-binding protein
D YPK_2711 cationic amino acid ABC transporter, periplasmic binding protein K09997 artI; arginine transport system substrate-binding protein
D YPK_2713 polar amino acid ABC transporter, inner membrane subunit K09998 artM; arginine transport system permease protein
D YPK_2712 polar amino acid ABC transporter, inner membrane subunit K09999 artQ; arginine transport system permease protein
D YPK_2710 ABC transporter related K10000 artP; arginine transport system ATP-binding protein [EC:7.4.2.1]
D YPK_3010 extracellular solute-binding protein family 3 K10001 gltI; glutamate/aspartate transport system substrate-binding protein
D YPK_3012 polar amino acid ABC transporter, inner membrane subunit K10002 gltK; glutamate/aspartate transport system permease protein
D YPK_3011 polar amino acid ABC transporter, inner membrane subunit K10003 gltJ; glutamate/aspartate transport system permease protein
D YPK_3013 ABC transporter related K10004 gltL; glutamate/aspartate transport system ATP-binding protein [EC:7.4.2.1]
D YPK_2376 extracellular solute-binding protein family 3 K02424 tcyA; L-cystine transport system substrate-binding protein
D YPK_2375 polar amino acid ABC transporter, inner membrane subunit K10009 tcyB; L-cystine transport system permease protein
D YPK_2374 ABC transporter related K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D YPK_3974 Extracellular ligand-binding receptor K01999 livK; branched-chain amino acid transport system substrate-binding protein
D YPK_3973 inner-membrane translocator K01997 livH; branched-chain amino acid transport system permease protein
D YPK_3972 inner-membrane translocator K01998 livM; branched-chain amino acid transport system permease protein
D YPK_3971 ABC transporter related K01995 livG; branched-chain amino acid transport system ATP-binding protein
D YPK_3970 ABC transporter related K01996 livF; branched-chain amino acid transport system ATP-binding protein
D YPK_2743 NLPA lipoprotein K02073 metQ; D-methionine transport system substrate-binding protein
D YPK_1094 lipoprotein, YaeC family K02073 metQ; D-methionine transport system substrate-binding protein
D YPK_2741 binding-protein-dependent transport systems inner membrane component K02072 metI; D-methionine transport system permease protein
D YPK_1095 binding-protein-dependent transport systems inner membrane component K02072 metI; D-methionine transport system permease protein
D YPK_1096 D-methionine ABC transporter, ATPase subunit K02071 metN; D-methionine transport system ATP-binding protein
D YPK_2742 ABC transporter related K02071 metN; D-methionine transport system ATP-binding protein
D YPK_2873 urea ABC transporter, urea binding protein K11959 urtA; urea transport system substrate-binding protein
D YPK_2872 urea ABC transporter, permease protein UrtB K11960 urtB; urea transport system permease protein
D YPK_2871 urea ABC transporter, permease protein UrtC K11961 urtC; urea transport system permease protein
D YPK_2870 urea ABC transporter, ATP-binding protein UrtD K11962 urtD; urea transport system ATP-binding protein
D YPK_2869 urea ABC transporter, ATP-binding protein UrtE K11963 urtE; urea transport system ATP-binding protein
D YPK_2927 ABC transporter related K11963 urtE; urea transport system ATP-binding protein
D YPK_3329 extracellular solute-binding protein family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D YPK_4237 extracellular solute-binding protein family 3 K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D YPK_3327 polar amino acid ABC transporter, inner membrane subunit K02029 ABC.PA.P; polar amino acid transport system permease protein
D YPK_3328 polar amino acid ABC transporter, inner membrane subunit K02029 ABC.PA.P; polar amino acid transport system permease protein
D YPK_4238 polar amino acid ABC transporter, inner membrane subunit K02029 ABC.PA.P; polar amino acid transport system permease protein
D YPK_4239 polar amino acid ABC transporter, inner membrane subunit K02029 ABC.PA.P; polar amino acid transport system permease protein
D YPK_3326 ABC transporter related K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D YPK_2070 extracellular solute-binding protein family 5 K15580 oppA; oligopeptide transport system substrate-binding protein
D YPK_1906 extracellular solute-binding protein family 5 K15580 oppA; oligopeptide transport system substrate-binding protein
D YPK_2069 Alkaline phosphatase K15581 oppB; oligopeptide transport system permease protein
D YPK_2068 binding-protein-dependent transport systems inner membrane component K15582 oppC; oligopeptide transport system permease protein
D YPK_2067 oligopeptide/dipeptide ABC transporter, ATPase subunit K15583 oppD; oligopeptide transport system ATP-binding protein
D YPK_2066 oligopeptide/dipeptide ABC transporter, ATPase subunit K10823 oppF; oligopeptide transport system ATP-binding protein
D YPK_0088 4-phytase K12368 dppA; dipeptide transport system substrate-binding protein
D YPK_0089 Alkaline phosphatase K12369 dppB; dipeptide transport system permease protein
D YPK_0090 binding-protein-dependent transport systems inner membrane component K12370 dppC; dipeptide transport system permease protein
D YPK_0091 oligopeptide/dipeptide ABC transporter, ATPase subunit K12371 dppD; dipeptide transport system ATP-binding protein
D YPK_0092 oligopeptide/dipeptide ABC transporter, ATPase subunit K12372 dppF; dipeptide transport system ATP-binding protein
D YPK_1892 extracellular solute-binding protein family 5 K19226 sapA; cationic peptide transport system substrate-binding protein
D YPK_1891 binding-protein-dependent transport systems inner membrane component K19227 sapB; cationic peptide transport system permease protein
D YPK_1890 binding-protein-dependent transport systems inner membrane component K19228 sapC; cationic peptide transport system permease protein
D YPK_1889 oligopeptide/dipeptide ABC transporter, ATPase subunit K19229 sapD; cationic peptide transport system ATP-binding protein
D YPK_1888 ABC transporter related K19230 sapF; cationic peptide transport system ATP-binding protein
D YPK_1125 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D YPK_3686 extracellular solute-binding protein family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D YPK_1126 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein
D YPK_3687 binding-protein-dependent transport systems inner membrane component K02033 ABC.PE.P; peptide/nickel transport system permease protein
D YPK_1127 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D YPK_3688 binding-protein-dependent transport systems inner membrane component K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D YPK_1128 ABC transporter related K02031 ddpD; peptide/nickel transport system ATP-binding protein
D YPK_3689 ABC transporter related K02031 ddpD; peptide/nickel transport system ATP-binding protein
D YPK_3690 ABC transporter related K02032 ddpF; peptide/nickel transport system ATP-binding protein
D YPK_1129 ABC transporter related K02032 ddpF; peptide/nickel transport system ATP-binding protein
D YPK_2786 extracellular solute-binding protein family 5 K13893 yejA; microcin C transport system substrate-binding protein
D YPK_2787 binding-protein-dependent transport systems inner membrane component K13894 yejB; microcin C transport system permease protein
D YPK_2788 binding-protein-dependent transport systems inner membrane component K13895 yejE; microcin C transport system permease protein
D YPK_2789 ABC transporter related K13896 yejF; microcin C transport system ATP-binding protein
D YPK_3461 periplasmic binding protein K23227 fhuD; ferric hydroxamate transport system substrate-binding protein
D YPK_3460 transport system permease protein K23228 fhuB; ferric hydroxamate transport system permease protein
D YPK_3462 ABC transporter related K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16]
D YPK_3891 periplasmic binding protein K25132 hmuT; heme transport system substrate-binding protein
D YPK_3892 transport system permease protein K25133 hmuU; heme transport system permease protein
D YPK_3893 ABC transporter related K10834 hmuV; heme transport system ATP-binding protein [EC:7.6.2.5]
D YPK_0698 periplasmic binding protein K23185 fepB; ferric enterobactin transport system substrate-binding protein
D YPK_2540 periplasmic binding protein K25286 fagD; iron-siderophore transport system substrate-binding protein
D YPK_2541 transport system permease protein K23186 fepD; iron-siderophore transport system permease protein
D YPK_2542 transport system permease protein K23187 fepG; iron-siderophore transport system permease protein
D YPK_2543 ABC transporter related K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-]
D YPK_0071 periplasmic binding protein K25282 yclQ; iron-siderophore transport system substrate-binding protein
D YPK_0069 transport system permease protein K25283 yclO; iron-siderophore transport system permease protein
D YPK_0070 transport system permease protein K25284 yclN; iron-siderophore transport system permease protein
D YPK_0068 ABC transporter related K25285 yclP; iron-siderophore transport system ATP-binding protein [EC:7.2.2.-]
D YPK_2751 periplasmic binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D YPK_0816 periplasmic binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D YPK_2750 transport system permease protein K02015 ABC.FEV.P; iron complex transport system permease protein
D YPK_2719 transport system permease protein K02015 ABC.FEV.P; iron complex transport system permease protein
D YPK_2718 ABC transporter related K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D YPK_2749 ABC transporter related K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D YPK_3455 periplasmic binding protein K06858 btuF; vitamin B12 transport system substrate-binding protein
D YPK_1828 transport system permease protein K06073 btuC; vitamin B12 transport system permease protein
D YPK_1830 ABC transporter related K06074 btuD; vitamin B12 transport system ATP-binding protein [EC:7.6.2.8]
D YPK_2140 periplasmic solute binding protein K09815 znuA; zinc transport system substrate-binding protein
D YPK_2142 ABC-3 protein K09816 znuB; zinc transport system permease protein
D YPK_2141 ABC transporter related K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D YPK_1815 periplasmic solute binding protein K11604 sitA; manganese/iron transport system substrate-binding protein
D YPK_1813 ABC-3 protein K11605 sitC; manganese/iron transport system permease protein
D YPK_1812 ABC-3 protein K11606 sitD; manganese/iron transport system permease protein
D YPK_1814 ABC transporter related K11607 sitB; manganese/iron transport system ATP-binding protein
D YPK_3678 permease YjgP/YjgQ family protein K07091 lptF; lipopolysaccharide export system permease protein
D YPK_3677 permease YjgP/YjgQ family protein K11720 lptG; lipopolysaccharide export system permease protein
D YPK_0506 ABC transporter related K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D YPK_2903 ABC-2 type transporter K25180 ybhR; drug efflux transport system permease protein
D YPK_2902 ABC-2 type transporter K25181 ybhS; drug efflux transport system permease protein
D YPK_2901 ABC transporter related K25182 ybhF; drug efflux transport system ATP-binding protein
D YPK_2900 secretion protein HlyD family protein K25183 ybhG; membrane fusion protein YbhG
D YPK_1707 lipoprotein releasing system, transmembrane protein, LolC/E family K09808 lolC_E; lipoprotein-releasing system permease protein
D YPK_1709 lipoprotein releasing system, transmembrane protein LolE K09808 lolC_E; lipoprotein-releasing system permease protein
D YPK_1708 lipoprotein releasing system, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D YPK_1499 heme exporter protein CcmD K02196 ccmD; heme exporter protein D
D YPK_1498 heme exporter protein CcmC K02195 ccmC; heme exporter protein C
D YPK_1497 heme exporter protein CcmB K02194 ccmB; heme exporter protein B
D YPK_1496 heme exporter protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D YPK_3977 protein insertion ABC transporter, inner membrane subunit FtsX K09811 ftsX; cell division transport system permease protein
D YPK_3978 Type II (General) Secretory Pathway (IISP) Family protein K09812 ftsE; cell division transport system ATP-binding protein
D YPK_3476 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein
D YPK_3477 ABC transporter related K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D YPK_3157 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D YPK_2574 putative membrane protein K02004 ABC.CD.P; putative ABC transport system permease protein
D YPK_2247 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D YPK_2248 protein of unknown function DUF214 K02004 ABC.CD.P; putative ABC transport system permease protein
D YPK_3158 ABC transporter related K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D YPK_2576 ABC transporter related K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D YPK_2246 ABC transporter related K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D YPK_1849 FeS assembly ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein
D YPK_1994 conserved hypothetical protein K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7
D YPK_0778 anion transporter K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5
D YPK_1856 MATE efflux family protein K26939 norM; MATE family, multidrug efflux pump
D YPK_2504 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D YPK_2492 oligosaccharide/H+ symporter, major facilitator superfamily (MFS) K02532 lacY; MFS transporter, OHS family, lactose permease
D YPK_3539 sugar efflux transporter K03291 MFS.SET; MFS transporter, SET family, sugar efflux transporter
D YPK_2910 nucleoside transporter K11537 xapB; MFS transporter, NHS family, xanthosine permease
D YPK_3597 major facilitator superfamily MFS_1 K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D YPK_1407 major facilitator superfamily MFS_1 K03290 nanT; MFS transporter, SHS family, sialic acid transporter
D YPK_0978 major facilitator superfamily MFS_1 K08191 exuT; MFS transporter, ACS family, aldohexuronate transporter
D YPK_0553 d-galactonate transporter K08191 exuT; MFS transporter, ACS family, aldohexuronate transporter
D YPK_2454 4-hydroxyphenylacetate transporter K02511 hpaX; MFS transporter, ACS family, 4-hydroxyphenylacetate permease
D YPK_2512 major facilitator superfamily MFS_1 K26580 rhmT; MFS transporter, ACS family, inner membrane transport protein
D YPK_1269 Chloramphenicol O-acetyltransferase K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter
D YPK_0083 phosphoglycerate transporter K07783 uhpC; MFS transporter, OPA family, sugar phosphate sensor protein UhpC
D YPK_1028 major facilitator superfamily MFS_1 K08227 lplT; MFS transporter, LPLT family, lysophospholipid transporter
D YPK_3239 AmpG-related permease K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D YPK_2792 drug resistance transporter, Bcr/CflA subfamily K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D YPK_2106 drug resistance transporter, Bcr/CflA subfamily K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D YPK_0048 major facilitator superfamily MFS_1 K08160 mdfA; MFS transporter, DHA1 family, multidrug/chloramphenicol efflux transport protein
D YPK_2162 major facilitator superfamily MFS_1 K08162 mdtH; MFS transporter, DHA1 family, multidrug resistance protein
D YPK_1022 major facilitator superfamily MFS_1 K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein
D YPK_3339 drug resistance transporter, EmrB/QacA subfamily K03446 emrB; MFS transporter, DHA2 family, multidrug resistance protein
D YPK_1791 major facilitator superfamily MFS_1 K08169 yebQ; MFS transporter, DHA2 family, multidrug resistance protein
D YPK_1329 major facilitator superfamily MFS_1 K18326 mdtD; MFS transporter, DHA2 family, multidrug resistance protein
D YPK_3174 putative membrane efflux protein K08223 fsr; MFS transporter, FSR family, fosmidomycin resistance protein
D YPK_1983 major facilitator superfamily MFS_1 K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein
D YPK_2680 major facilitator superfamily MFS_1 K08219 UMF2; MFS transporter, UMF2 family, putative MFS family transporter protein
D YPK_0238 major facilitator superfamily MFS_1 K06141 tsgA; MFS transporter, TsgA protein
D YPK_1652 General substrate transporter K08368 yaaU; MFS transporter, putative metabolite transport protein
D YPK_1427 phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D YPK_1034 PTSINtr with GAF domain, PtsP K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9]
D YPK_1428 Phosphotransferase system, phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr
D YPK_0501 Phosphotransferase system, phosphocarrier protein HPr K08485 ptsO; phosphocarrier protein NPr
D YPK_3657 phosphoenolpyruvate-protein phosphotransferase K23991 ptsA; multiphosphoryl transfer protein [EC:2.7.3.9 2.7.1.-]
D YPK_2764 phosphocarrier, HPr family K11183 fruB; multiphosphoryl transfer protein [EC:2.7.1.202]
D YPK_1426 PTS system, glucose subfamily, IIA subunit K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D YPK_1694 PTS system, glucose-specific IIBC subunit K02779 ptsG; glucose PTS system EIICB or EIICBA component [EC:2.7.1.199]
D YPK_0974 phosphotransferase system PTS EIIB protein K02778 ptsGb; glucose PTS system EIIB component [EC:2.7.1.199]
D YPK_2996 PTS system, N-acetylglucosamine-specific IIBC subunit K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D YPK_0495 PTS system, trehalose-specific IIBC subunit K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201]
D YPK_2762 PTS system, fructose subfamily, IIC subunit K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D YPK_3659 PTS system, fructose-specific, IIB subunnit K11202 fryB; fructose-like PTS system EIIB component [EC:2.7.1.-]
D YPK_3660 phosphotransferase system PTS fructose-specific IIB subunit K11202 fryB; fructose-like PTS system EIIB component [EC:2.7.1.-]
D YPK_3658 PTS system, fructose subfamily, IIC subunit K11203 fryC; fructose-like PTS system EIIC or EIIBC or EIIABC component
D YPK_0026 PTS system, mannitol-specific IIC subunit K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]
D YPK_1146 phosphotransferase system PTS lactose/cellobiose-specific IIA subunit K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D YPK_1144 phosphotransferase system lactose/cellobiose-specific IIB subunit K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D YPK_1145 PTS system, lactose/cellobiose family IIC subunit K02761 celB; cellobiose PTS system EIIC component
D YPK_2464 PTS system, mannose/fructose/sorbose family, IIB subunit K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D YPK_2465 PTS system, mannose/fructose/sorbose family, IIC subunit K02795 manY; mannose PTS system EIIC component
D YPK_2466 PTS system, mannose/fructose/sorbose family, IID subunit K02796 manZ; mannose PTS system EIID component
D YPK_0989 PTS system fructose subfamily IIA component K02744 agaF; N-acetylgalactosamine PTS system EIIA component [EC:2.7.1.-]
D YPK_0992 PTS system, mannose/fructose/sorbose family, IIB subunit K02745 agaV; N-acetylgalactosamine PTS system EIIB component [EC:2.7.1.-]
D YPK_0991 phosphotransferase system PTS sorbose-specific IIC subunit K02746 agaW; N-acetylgalactosamine PTS system EIIC component
D YPK_0990 PTS system mannose/fructose/sorbose family IID component K02747 agaE; N-acetylgalactosamine PTS system EIID component
D YPK_1548 putative PTS IIA-like nitrogen-regulatory protein PtsN K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D YPK_1547 phosphotransferase system lactose/cellobiose-specific IIB subunit K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D YPK_1546 putative sugar-specific permease SgaT/UlaA K03475 ulaA; ascorbate PTS system EIIC component
D YPK_0503 PTS IIA-like nitrogen-regulatory protein PtsN K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
D YPK_4112 MIP family channel protein K02440 glpF; glycerol uptake facilitator
D YPK_1141 TrkA-N domain protein K10716 kch; voltage-gated potassium channel
D YPK_3219 ammonium transporter K03320 amt; ammonium transporter, Amt family
D YPK_1883 Glutathione S-transferase domain K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D YPK_2747 Glutathione S-transferase domain K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D YPK_0526 Glutathione S-transferase domain K03599 sspA; stringent starvation protein A
D YPK_1416 von Willebrand factor type A K07114 yfbK; Ca-activated chloride channel homolog
D YPK_2676 formate/nitrite transporter K06212 focA; formate transporter
D YPK_0233 formate/nitrite transporter K02598 nirC; nitrite transporter
D YPK_0312 large conductance mechanosensitive channel protein K03282 mscL; large conductance mechanosensitive channel
D YPK_3204 MscS Mechanosensitive ion channel K05802 mscK; potassium-dependent mechanosensitive channel
D YPK_3811 MscS Mechanosensitive ion channel K22051 mscM; miniconductance mechanosensitive channel
D YPK_0854 MscS Mechanosensitive ion channel K03442 mscS; small conductance mechanosensitive channel
D YPK_1641 MscS Mechanosensitive ion channel K16053 ybdG; miniconductance mechanosensitive channel
D YPK_1341 magnesium transporter K06213 mgtE; magnesium transporter
D YPK_1138 urea transporter K08717 utp; urea transporter
D YPK_1747 chemotaxis protein MotA K02556 motA; chemotaxis protein MotA
D YPK_0730 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA
D YPK_1748 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB
D YPK_0731 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB
D YPK_0672 tonB-system energizer ExbB K03561 exbB; biopolymer transport protein ExbB
D YPK_0673 TonB system transport protein ExbD K03559 exbD; biopolymer transport protein ExbD
D YPK_2959 protein TolQ K03562 tolQ; biopolymer transport protein TolQ
D YPK_2958 protein TolR K03560 tolR; biopolymer transport protein TolR
D YPK_4002 magnesium and cobalt transport protein CorA K03284 corA; magnesium transporter
D YPK_1907 Mg2 transporter protein CorA family protein K16074 zntB; zinc transporter
D YPK_3030 CrcB protein K06199 crcB; fluoride exporter
D YPK_1142 Camphor resistance CrcB protein K06199 crcB; fluoride exporter
D YPK_1143 CrcB protein K06199 crcB; fluoride exporter
D YPK_3772 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family
D YPK_3367 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family
D YPK_2649 porin Gram-negative type K09476 ompF; outer membrane pore protein F
D YPK_2857 porin Gram-negative type K11929 phoE; outer membrane pore protein E
D YPK_2839 porin Gram-negative type K09475 ompC; outer membrane pore protein C
D YPK_0381 porin LamB type K02024 lamB; maltoporin
D YPK_0975 porin LamB type K02024 lamB; maltoporin
D YPK_2630 OmpA domain protein transmembrane region-containing protein K03286 TC.OOP; OmpA-OmpF porin, OOP family
D YPK_1606 virulence-related outer membrane protein K11934 ompX; outer membrane protein X
D YPK_1268 virulence-related outer membrane protein K16078 ail; attachment invasion locus protein
D YPK_1506 membrane protein involved in aromatic hydrocarbon degradation K06076 fadL; long-chain fatty acid transport protein
D YPK_4044 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPK_1774 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPK_1788 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPK_2757 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPK_1477 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPK_2274 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPK_0743 outer membrane autotransporter barrel domain protein K12678 aidA-I; autotransporter family porin
D YPK_4073 TonB-dependent vitamin B12 receptor K16092 btuB; vitamin B12 transporter
D YPK_4085 Heme-binding A family protein K12545 hasA; heme acquisition protein HasA
D YPK_4086 TonB-dependent heme/hemoglobin receptor family protein K16152 hasR; heme acquisition protein HasR
D YPK_2539 TonB-dependent siderophore receptor K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid
D YPK_3409 TonB-dependent receptor K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins
D YPK_2748 TonB-dependent receptor K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins
D YPK_3889 TonB-dependent heme/hemoglobin receptor family protein K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D YPK_0239 TonB-dependent copper receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D YPK_0815 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D YPK_0750 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D YPK_2469 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D YPK_0782 TonB-dependent siderophore receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D YPK_0654 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein
D YPK_3717 RND efflux system, outer membrane lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system
D YPK_1074 outer membrane protein assembly complex, YaeT protein K07277 SAM50; outer membrane protein insertion porin family
D YPK_1296 outer membrane assembly lipoprotein YfgL K17713 bamB; outer membrane protein assembly factor BamB
D YPK_1363 NlpBDapX family lipoprotein K07287 bamC; outer membrane protein assembly factor BamC
D YPK_3352 putative lipoprotein K05807 bamD; outer membrane protein assembly factor BamD
D YPK_2977 SmpA/OmlA domain protein K06186 bamE; outer membrane protein assembly factor BamE
D YPK_3770 surface antigen (D15) K07278 tamA; translocation and assembly module TamA
D YPK_3769 protein of unknown function DUF490 K09800 tamB; translocation and assembly module TamB
D YPK_0095 Oligogalacturonate-specific porin K22110 kdgM; oligogalacturonate-specific porin family protein
D YPK_1797 Oligogalacturonate-specific porin K22110 kdgM; oligogalacturonate-specific porin family protein
D YPK_0871 YadA domain protein K21449 ata; trimeric autotransporter adhesin
D YPK_0507 lipopolysaccharide transport periplasmic protein LptA K09774 lptA; lipopolysaccharide export system protein LptA
D YPK_0508 protein of unknown function DUF1239 K11719 lptC; lipopolysaccharide export system protein LptC
D YPK_3570 Organic solvent tolerance protein K04744 lptD; LPS-assembly protein
D YPK_3016 Rare lipoprotein B K03643 lptE; LPS-assembly lipoprotein
D YPK_3837 conserved hypothetical protein K19298 subB; subtilase cytotoxin, subunit B
D YPK_3008 transporter-associated region K06189 corC; hemolysin (HlyC) family protein
D YPK_2559 LrgA family protein K06518 cidA; holin-like protein
D YPK_2835 putative transport protein K16210 togT; oligogalacturonide transporter
D YPK_2752 amino acid permease-associated region K11733 lysP; lysine-specific permease
D YPK_3494 amino acid permease-associated region K11734 aroP; aromatic amino acid transport protein AroP
D YPK_2477 amino acid permease-associated region K11734 aroP; aromatic amino acid transport protein AroP
D YPK_3272 amino acid permease-associated region K11736 proY; proline-specific permease ProY
D YPK_2361 amino acid permease-associated region K11737 cycA; D-serine/D-alanine/glycine transporter
D YPK_2256 amino acid permease-associated region K11738 ansP; L-asparagine permease
D YPK_0078 amino acid permease-associated region K16234 hutT; histidine transporter
D YPK_1939 arginine/ornithine antiporter K03758 arcD; arginine:ornithine antiporter / lysine permease
D YPK_2861 amino acid permease-associated region K03759 adiC; arginine:agmatine antiporter
D YPK_0646 amino acid permease-associated region K16263 yjeH; amino acid efflux transporter
D YPK_2951 cation diffusion facilitator family transporter K16264 czcD; cobalt-zinc-cadmium efflux system protein
D YPK_4127 cation diffusion facilitator family transporter K13283 fieF; ferrous-iron efflux pump FieF
D YPK_3208 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump
D YPK_3718 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump
D YPK_0739 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump
D YPK_1382 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18324 acrD; multidrug efflux pump
D YPK_1331 acriflavin resistance protein K07788 mdtB; multidrug efflux pump
D YPK_1330 acriflavin resistance protein K07789 mdtC; multidrug efflux pump
D YPK_1914 small multidrug resistance protein K03297 emrE; small multidrug resistance pump
D YPK_3817 small multidrug resistance protein K11741 sugE; quaternary ammonium compound-resistance protein SugE
D YPK_2130 small multidrug resistance protein K11742 mdtI; spermidine export protein MdtI
D YPK_2131 small multidrug resistance protein K11743 mdtJ; spermidine export protein MdtJ
D YPK_1154 protein of unknown function DUF6 transmembrane K08978 TC.BAT1; bacterial/archaeal transporter family protein
D YPK_1605 protein of unknown function DUF6 transmembrane K11939 rhtA; inner membrane transporter RhtA
D YPK_3840 L-rhamnose-proton symporter, RhaT family, DMT superfamily K02856 rhaT; L-rhamnose-H+ transport protein
D YPK_4001 RarD protein, DMT superfamily transporter K05786 rarD; chloramphenicol-sensitive protein RarD
D YPK_1836 conserved hypothetical protein K12962 arnE; undecaprenyl phosphate-alpha-L-ara4N flippase subunit ArnE
D YPK_0762 gluconate transporter K16321 gntP; high-affinity gluconate transporter
D YPK_0135 gluconate transporter K06155 gntT; Gnt-I system high-affinity gluconate transporter
D YPK_0112 Gluconate transporter K03299 TC.GNTP; gluconate:H+ symporter, GntP family
D YPK_3826 anaerobic c4-dicarboxylate antiporter, Dcu family K07791 dcuA; anaerobic C4-dicarboxylate transporter DcuA
D YPK_3359 anaerobic c4-dicarboxylate antiporter, Dcu family K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D YPK_2914 choline/carnitine/betaine transporter K02168 betT; choline/glycine/proline betaine transport protein
D YPK_2233 calcium/proton exchanger K07300 chaA; Ca2+:H+ antiporter
D YPK_0511 Na+/Ca+ antiporter, CaCA family K07301 yrbG; cation:H+ antiporter
D YPK_0122 phosphate transporter K16322 pit; low-affinity inorganic phosphate transporter
D YPK_0455 sodium/pantothenate symporter K14392 panF; sodium/pantothenate symporter
D YPK_2367 sodium/proline symporter K11928 putP; sodium/proline symporter
D YPK_3923 cation/acetate symporter ActP K14393 actP; cation/acetate symporter
D YPK_3920 sodium:dicarboxylate symporter K11102 gltP; proton glutamate symport protein
D YPK_0098 sodium:dicarboxylate symporter K11103 dctA; aerobic C4-dicarboxylate transport protein
D YPK_0558 sodium:dicarboxylate symporter K07862 sstT; serine/threonine transporter
D YPK_4181 sodium/glutamate symporter K03312 gltS; glutamate:Na+ symporter, ESS family
D YPK_3592 Na+/H+ antiporter NhaA K03313 nhaA; Na+:H+ antiporter, NhaA family
D YPK_2110 Na+/H+ antiporter NhaB K03314 nhaB; Na+:H+ antiporter, NhaB family
D YPK_1967 Na+/H+ antiporter NhaC K03315 nhaC; Na+:H+ antiporter, NhaC family
D YPK_0428 Na+/H+ antiporter K24163 nhaK; monovalent cation/hydrogen antiporter
D YPK_1658 sodium/hydrogen exchanger K11105 cvrA; potassium/hydrogen antiporter
D YPK_0266 potassium efflux system protein K11747 kefB; glutathione-regulated potassium-efflux system protein KefB
D YPK_0265 NAD(P)H dehydrogenase (quinone) K11748 kefG; glutathione-regulated potassium-efflux system ancillary protein KefG
D YPK_3175 potassium efflux system protein K26735 KEA4_5_6; K+:H+ antiporter
D YPK_3930 potassium uptake protein, TrkH family K03498 trkH; trk/ktr system potassium uptake protein
D YPK_0313 TrkA-N domain protein K03499 trkA; trk/ktr system potassium uptake protein
D YPK_1353 uracil-xanthine permease K02824 uraA; uracil permease
D YPK_4182 uracil-xanthine permease K16345 xanP; xanthine permease XanP
D YPK_4241 Xanthine/uracil/vitamin C permease K06901 pbuG; adenine/guanine/hypoxanthine permease
D YPK_0426 Xanthine/uracil/vitamin C permease K06901 pbuG; adenine/guanine/hypoxanthine permease
D YPK_1438 nucleoside transporter K11535 nupC; nucleoside transport protein
D YPK_2853 aromatic amino acid transporter K03834 tyrP; tyrosine-specific transport protein
D YPK_2776 aromatic amino acid transporter K03835 mtr; tryptophan-specific transport protein
D YPK_2739 serine transporter K03837 sdaC; serine transporter
D YPK_3895 putative transmembrane transport protein K26603 yhjV; inner membrane transport protein
D YPK_3458 Chloride channel core K03281 clcA; chloride channel protein, CIC family
D YPK_1979 Chloride channel core K03281 clcA; chloride channel protein, CIC family
D YPK_1139 high-affinity nickel-transporter K07241 hoxN; nickel/cobalt transporter (NiCoT) family protein
D YPK_2174 sulfate transporter K03321 TC.SULP; sulfate permease, SulP family
D YPK_1439 Mn2+/Fe2+ transporter, NRAMP family K03322 mntH; manganese transport protein
D YPK_3416 arsenical pump membrane protein K03893 arsB; arsenical pump membrane protein
D YPK_4025 polysaccharide biosynthesis protein K16693 wzxE; enterobacterial common antigen flippase
D YPK_2158 integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase
D YPK_1298 Auxin Efflux Carrier K13936 mdcF; malonate transporter and related proteins
D YPK_3957 Auxin Efflux Carrier K13936 mdcF; malonate transporter and related proteins
D YPK_4211 potassium uptake protein K03549 kup; KUP system potassium uptake protein
D YPK_0855 L-lysine exporter K06895 lysE; L-lysine exporter family protein LysE/ArgO
D YPK_3996 Lysine exporter protein (LYSE/YGGA) K05834 rhtB; homoserine/homoserine lactone efflux protein
D YPK_3997 homoserine/threonine efflux pump K05835 rhtC; threonine efflux protein
D YPK_3581 Lysine exporter protein (LYSE/YGGA) K05835 rhtC; threonine efflux protein
D YPK_3335 AzlC family protein K26605 azlC; branched chain amino acid efflux pump
D YPK_3336 conserved hypothetical protein K26606 azlD; branched chain amino acid efflux pump
D YPK_0485 Fusaric acid resistance protein conserved region K03468 aaeB; p-hydroxybenzoic acid efflux pump subunit AaeB
D YPK_0595 Fusaric acid resistance protein conserved region K15547 mdtO; multidrug resistance protein MdtO
D YPK_1357 protein of unknown function UPF0118 K03548 perM; putative permease
D YPK_3987 conserved hypothetical integral membrane protein K09125 yhhQ; queuosine precursor transporter
D YPK_1817 multiple antibiotic resistance (MarC)-related protein K05595 marC; multiple antibiotic resistance protein
D YPK_3519 cell division protein FtsW K03588 ftsW; cell division protein FtsW
D YPK_2468 protein of unknown function DUF204 K23242 mntP; manganese efflux pump family protein
D YPK_2252 iron permease FTR1 K07243 FTR; high-affinity iron transporter
D YPK_2366 iron permease FTR1 K07243 FTR; high-affinity iron transporter
D YPK_2365 conserved hypothetical protein K07224 efeO; iron uptake system component EfeO
D YPK_2364 Dyp-type peroxidase family K16301 efeB; deferrochelatase/peroxidase EfeB [EC:1.11.1.-]
D YPK_2251 conserved hypothetical protein K07230 p19; periplasmic iron binding protein
D YPK_1272 high-affinity nickel-transporter K08970 rcnA; nickel/cobalt transporter (NicO) family protein
D YPK_4082 TonB family protein K03832 tonB; periplasmic protein TonB
D YPK_2055 TonB family protein K03832 tonB; periplasmic protein TonB
D YPK_2955 peptidoglycan-associated lipoprotein K03640 pal; peptidoglycan-associated lipoprotein
D YPK_2957 protein TolA K03646 tolA; colicin import membrane protein
D YPK_2956 Tol-Pal system beta propeller repeat protein TolB K03641 tolB; TolB protein
D YPK_3394 anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3]
D YPK_1456 anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3]
D YPK_1455 dimethylsulfoxide reductase, chain B K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B
D YPK_3393 dimethylsulfoxide reductase, chain B K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B
D YPK_3392 DMSO reductase anchor subunit (DmsC) K07308 dmsC; anaerobic dimethyl sulfoxide reductase subunit C
D YPK_1454 putative anaerobic dimethyl sulfoxide reductase, C subunit K07308 dmsC; anaerobic dimethyl sulfoxide reductase subunit C
D YPK_1026 molybdopterin oxidoreductase K08351 bisC; biotin/methionine sulfoxide reductase [EC:1.-.-.-]
D YPK_3338 efflux pump membrane protein K03543 emrA; membrane fusion protein, multidrug efflux system
D YPK_0596 secretion protein HlyD family protein K15549 mdtN; membrane fusion protein, multidrug efflux system
D YPK_4083 type I secretion membrane fusion protein, HlyD family K12537 hasE; membrane fusion protein, type I secretion system
D YPK_2003 type I secretion membrane fusion protein, HlyD family K12532 rtxD; membrane fusion protein, RTX toxin transport system
D YPK_4109 secretion protein HlyD family protein K13408 cvaA; membrane fusion protein
D YPK_3719 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D YPK_3207 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D YPK_2938 conserved hypothetical protein K25859 acrZ; accessory protein, multidrug efflux pump
D YPK_1332 efflux transporter, RND family, MFP subunit K07799 mdtA; membrane fusion protein, multidrug efflux system
D YPK_2696 efflux transporter, RND family, MFP subunit K13888 macA; membrane fusion protein, macrolide-specific efflux system
D YPK_1423 efflux transporter, RND family, MFP subunit K13888 macA; membrane fusion protein, macrolide-specific efflux system
D YPK_0484 secretion protein HlyD family protein K15548 aaeA; p-hydroxybenzoic acid efflux pump subunit AaeA
D YPK_2952 nicotinamide mononucleotide transporter PnuC K03811 pnuC; nicotinamide mononucleotide transporter
D YPK_0169 FeoA family protein K04758 feoA; ferrous iron transport protein A
D YPK_0168 ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B
D YPK_0167 Protein of unknown function DUF1920 K07490 feoC; ferrous iron transport protein C
D YPK_0121 universal stress protein B K06144 uspB; universal stress protein B
D YPK_1501 cytochrome c-type biogenesis protein CcmF K02198 ccmF; cytochrome c-type biogenesis protein CcmF
D YPK_1743 MgtC/SapB transporter K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein
D YPK_1915 MgtC/SapB transporter K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein
D YPK_2436 copper resistance D domain protein K07245 pcoD; copper resistance protein D
D YPK_2437 copper resistance protein CopC K07156 copC; copper resistance protein C
D YPK_2098 MltA-interacting MipA family protein K07274 mipA; MipA family protein
C 02044 Secretion system [BR:ypy02044]
D YPK_0654 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein
D YPK_2004 type I secretion system ATPase K12530 rtxB; ATP-binding cassette, subfamily B, bacterial RtxB
D YPK_2002 type I secretion system ATPase K12531 rtxE; ATP-binding cassette, subfamily B, bacterial RtxE
D YPK_2003 type I secretion membrane fusion protein, HlyD family K12532 rtxD; membrane fusion protein, RTX toxin transport system
D YPK_4084 type I secretion system ATPase K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D YPK_4083 type I secretion membrane fusion protein, HlyD family K12537 hasE; membrane fusion protein, type I secretion system
D YPK_4109 secretion protein HlyD family protein K13408 cvaA; membrane fusion protein
D YPK_4110 ABC transporter related K13409 cvaB; ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB
D YPK_1003 general secretion pathway protein C K02452 gspC; general secretion pathway protein C
D YPK_1004 general secretion pathway protein D K02453 gspD; general secretion pathway protein D
D YPK_1005 type II secretion system protein E K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D YPK_1006 type II secretion system protein K02455 gspF; general secretion pathway protein F
D YPK_1007 general secretion pathway protein G K02456 gspG; general secretion pathway protein G
D YPK_1008 general secretion pathway protein H K02457 gspH; general secretion pathway protein H
D YPK_1009 type II secretion system protein I/J K02458 gspI; general secretion pathway protein I
D YPK_1010 general secretion pathway protein J K02459 gspJ; general secretion pathway protein J
D YPK_1011 general secretion pathway protein K K02460 gspK; general secretion pathway protein K
D YPK_1012 general secretion pathway protein L K02461 gspL; general secretion pathway protein L
D YPK_1014 Prepilin peptidase K02464 gspO; general secretion pathway protein O [EC:3.4.23.43 2.1.1.-]
D YPK_1015 putative lipoprotein K02465 gspS; general secretion pathway protein S
D YPK_1291 type IV pilus biogenesis/stability protein PilW K02656 pilF; type IV pilus assembly protein PilF
D YPK_0833 twitching motility protein K02669 pilT; twitching motility protein PilT
D YPK_0687 peptidase A24A prepilin type IV K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D YPK_0686 putative membrane protein K02279 cpaB; pilus assembly protein CpaB
D YPK_0685 type II and III secretion system protein K02280 cpaC; pilus assembly protein CpaC
D YPK_0683 conserved hypothetical protein K02282 cpaE; pilus assembly protein CpaE
D YPK_0682 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D YPK_0681 type II secretion system protein K12510 tadB; tight adherence protein B
D YPK_0680 type II secretion system protein K12511 tadC; tight adherence protein C
D YPK_0679 putative lipoprotein K12512 tadD; tight adherence protein D
D YPK_0678 TadE family protein K12513 tadE; tight adherence protein E
D YPK_0677 conserved hypothetical protein K12514 tadF; tight adherence protein F
D YPK_1037 conserved hypothetical protein K02679 ppdA; prepilin peptidase dependent protein A
D YPK_1038 putative prepilin peptidase dependent protein K02680 ppdB; prepilin peptidase dependent protein B
D YPK_1040 prepilin peptidase dependent protein-like protein K02681 ppdC; prepilin peptidase dependent protein C
D YPK_3498 putative prepilin peptidase dependent protein D precursor K02682 ppdD; prepilin peptidase dependent protein D
D YPK_3499 type II secretion system protein E K02504 hofB; protein transport protein HofB
D YPK_3500 type II secretion system protein K02505 hofC; protein transport protein HofC
D YPK_0220 conserved hypothetical protein K12288 hofM; pilus assembly protein HofM
D YPK_0221 Fimbrial assembly family protein K12289 hofN; pilus assembly protein HofN
D YPK_0222 membrane protein K12290 hofO; pilus assembly protein HofO
D YPK_0223 membrane protein K12291 hofP; pilus assembly protein HofP
D YPK_0224 type IV pilus secretin PilQ K02507 hofQ; protein transport protein HofQ
D YPK_0829 protein of unknown function YGGT K02221 yggT; YggT family protein
D YPK_3229 competence protein ComEA helix-hairpin-helix repeat protein K02237 comEA; competence protein ComEA
D YPK_2666 DNA internalization-related competence protein ComEC/Rec2 K02238 comEC; competence protein ComEC
D YPK_3917 type III secretion outer membrane pore, YscC/HrcC family K03219 yscC; type III secretion protein C
D YPK_3916 type III secretion apparatus protein, YscD/HrpQ family K03220 yscD; type III secretion protein D
D YPK_3913 type III secretion system needle protein K03221 yscF; type III secretion protein F
D YPK_3910 type III secretion apparatus lipoprotein, YscJ/HrcJ family K03222 yscJ; type III secretion protein J
D YPK_3906 ATPase, FliI/YscN family K03224 yscN; ATP synthase in type III secretion protein N [EC:7.4.2.8]
D YPK_3903 type III secretion system apparatus protein YscQ/HrcQ K03225 yscQ; type III secretion protein Q
D YPK_3902 Yop virulence translocation R K03226 yscR; type III secretion protein R
D YPK_3901 type III secretion protein, HrpO family K03227 yscS; type III secretion protein S
D YPK_3900 type III secretion protein SpaR/YscT/HrcT K03228 yscT; type III secretion protein T
D YPK_3899 type III secretion protein, YscU/HrpY family K03229 yscU; type III secretion protein U
D YPK_3907 type III secretion protein, HrcV family K03230 yscV; type III secretion protein V
D YPK_2431 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D YPK_0702 type III secretion FHIPEP protein K02400 flhA; flagellar biosynthesis protein FlhA
D YPK_2432 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D YPK_0703 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D YPK_0711 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D YPK_2391 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D YPK_2393 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D YPK_0713 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D YPK_2394 ATPase, FliI/YscN family K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D YPK_0714 ATPase, FliI/YscN family K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D YPK_2400 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D YPK_0707 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D YPK_2401 flagellar biosynthesis protein FliO K02418 fliO; flagellar protein FliO/FliZ
D YPK_2402 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D YPK_0706 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D YPK_2403 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D YPK_0705 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D YPK_2404 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D YPK_0704 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D YPK_0921 thiol:disulfide interchange protein DsbC K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D YPK_0743 outer membrane autotransporter barrel domain protein K12678 aidA-I; autotransporter family porin
D YPK_2673 Haemagluttinin domain protein K12342 yadB_C; adhesin YadB/C
D YPK_2672 conserved hypothetical protein K12342 yadB_C; adhesin YadB/C
D YPK_2157 Hemolysin activator HlyB domain protein K11017 shlB; hemolysin activation/secretion protein
D YPK_2156 filamentous haemagglutinin domain protein K11016 shlA; hemolysin
D YPK_1485 type VI secretion protein IcmF K11891 impL; type VI secretion system protein ImpL
D YPK_0399 type VI secretion protein IcmF K11891 impL; type VI secretion system protein ImpL
D YPK_2591 ImcF domain protein K11891 impL; type VI secretion system protein ImpL
D YPK_3550 type VI secretion protein IcmF K11891 impL; type VI secretion system protein ImpL
D YPK_0394 conserved hypothetical protein K11892 impK; type VI secretion system protein ImpK
D YPK_1484 type VI secretion system OmpA/MotB family protein K11892 impK; type VI secretion system protein ImpK
D YPK_0801 conserved hypothetical protein K11892 impK; type VI secretion system protein ImpK
D YPK_3551 type IV / VI secretion system protein, DotU family K11892 impK; type VI secretion system protein ImpK
D YPK_0800 type VI secretion protein, VC_A0114 family K11893 impJ; type VI secretion system protein ImpJ
D YPK_1483 type VI secretion protein, VC_A0114 family K11893 impJ; type VI secretion system protein ImpJ
D YPK_0393 type VI secretion protein, VC_A0114 family K11893 impJ; type VI secretion system protein ImpJ
D YPK_3552 type VI secretion protein, VC_A0114 family K11893 impJ; type VI secretion system protein ImpJ
D YPK_1472 type VI secretion protein, VC_A0111 family K11895 impH; type VI secretion system protein ImpH
D YPK_0390 type VI secretion protein, VC_A0111 family K11895 impH; type VI secretion system protein ImpH
D YPK_2586 type VI secretion protein, VC_A0111 family K11895 impH; type VI secretion system protein ImpH
D YPK_3560 type VI secretion protein, VC_A0111 family K11895 impH; type VI secretion system protein ImpH
D YPK_0389 type VI secretion protein, VC_A0110 family K11896 impG; type VI secretion system protein ImpG
D YPK_1473 type VI secretion protein, VC_A0110 family K11896 impG; type VI secretion system protein ImpG
D YPK_2587 type VI secretion protein, VC_A0110 family K11896 impG; type VI secretion system protein ImpG
D YPK_3561 type VI secretion protein, VC_A0110 family K11896 impG; type VI secretion system protein ImpG
D YPK_1490 type VI secretion system lysozyme-related protein K11897 impF; type VI secretion system protein ImpF
D YPK_3562 type VI secretion system lysozyme-related protein K11897 impF; type VI secretion system protein ImpF
D YPK_1480 type VI secretion protein, EvpB/VC_A0108 family K11900 impC; type VI secretion system protein ImpC
D YPK_0799 type VI secretion protein, EvpB/VC_A0108 family K11900 impC; type VI secretion system protein ImpC
D YPK_0387 type VI secretion protein, EvpB/VC_A0108 family K11900 impC; type VI secretion system protein ImpC
D YPK_3564 type VI secretion protein, EvpB/VC_A0108 family K11900 impC; type VI secretion system protein ImpC
D YPK_1479 type VI secretion protein, VC_A0107 family K11901 impB; type VI secretion system protein ImpB
D YPK_0386 type VI secretion protein, VC_A0107 family K11901 impB; type VI secretion system protein ImpB
D YPK_0798 type VI secretion protein, VC_A0107 family K11901 impB; type VI secretion system protein ImpB
D YPK_2600 type VI secretion protein, VC_A0107 family K11901 impB; type VI secretion system protein ImpB
D YPK_3565 type VI secretion protein, VC_A0107 family K11901 impB; type VI secretion system protein ImpB
D YPK_1471 ImpA domain protein K11902 impA; type VI secretion system protein ImpA
D YPK_3566 ImpA domain protein K11902 impA; type VI secretion system protein ImpA
D YPK_0385 type VI secretion system effector, Hcp1 family K11903 hcp; type VI secretion system secreted protein Hcp
D YPK_1481 type VI secretion system effector, Hcp1 family K11903 hcp; type VI secretion system secreted protein Hcp
D YPK_0803 type VI secretion system effector, Hcp1 family K11903 hcp; type VI secretion system secreted protein Hcp
D YPK_3563 protein of unknown function DUF796 K11903 hcp; type VI secretion system secreted protein Hcp
D YPK_0764 type VI secretion system Vgr family protein K11904 vgrG; type VI secretion system secreted protein VgrG
D YPK_0805 type VI secretion system Vgr family protein K11904 vgrG; type VI secretion system secreted protein VgrG
D YPK_1486 type VI secretion system Vgr family protein K11904 vgrG; type VI secretion system secreted protein VgrG
D YPK_0401 type VI secretion system Vgr family protein K11904 vgrG; type VI secretion system secreted protein VgrG
D YPK_3558 type VI secretion system Vgr family protein K11904 vgrG; type VI secretion system secreted protein VgrG
D YPK_0388 type VI secretion system lysozyme-related protein K11905 K11905; type VI secretion system protein
D YPK_2584 type VI secretion system lysozyme-related protein K11905 K11905; type VI secretion system protein
D YPK_0392 putative lipoprotein K11906 vasD; type VI secretion system protein VasD
D YPK_2585 conserved hypothetical protein K11906 vasD; type VI secretion system protein VasD
D YPK_1482 conserved hypothetical protein K11906 vasD; type VI secretion system protein VasD
D YPK_3553 putative lipoprotein K11906 vasD; type VI secretion system protein VasD
D YPK_1474 type VI secretion ATPase, ClpV1 family K11907 vasG; type VI secretion system protein VasG
D YPK_0395 type VI secretion ATPase, ClpV1 family K11907 vasG; type VI secretion system protein VasG
D YPK_3559 type VI secretion ATPase, ClpV1 family K11907 vasG; type VI secretion system protein VasG
D YPK_0804 type VI secretion ATPase, ClpV1 family K11907 vasG; type VI secretion system protein VasG
D YPK_2590 type VI secretion-associated protein, VC_A0119 family K11910 vasJ; type VI secretion system protein VasJ
D YPK_0398 type VI secretion-associated protein, VC_A0119 family K11910 vasJ; type VI secretion system protein VasJ
D YPK_0400 ImpA domain protein K11911 vasL; type VI secretion system protein VasL
D YPK_2583 ImpA domain protein K11911 vasL; type VI secretion system protein VasL
D YPK_0391 FHA domain containing protein K11894 impI; type VI secretion system protein ImpI
D YPK_1489 virulence protein SciE type K11898 impE; type VI secretion system protein ImpE
D YPK_0397 conserved hypothetical protein K11909 vasI; type VI secretion system protein VasI
D YPK_1786 Fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D YPK_4042 Fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D YPK_1789 Fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D YPK_1475 Fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D YPK_2272 Fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D YPK_1790 pili assembly chaperone K07346 fimC; fimbrial chaperone protein
D YPK_1775 chaperone protein K07346 fimC; fimbrial chaperone protein
D YPK_4043 pili assembly chaperone K07346 fimC; fimbrial chaperone protein
D YPK_4044 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPK_1774 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPK_1788 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPK_2757 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPK_1477 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPK_2274 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPK_1777 Spore coat U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D YPK_1773 Spore coat U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D YPK_1776 Spore coat U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D YPK_1778 Spore coat U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D YPK_0695 fimbrial biogenesis outer membrane usher protein K12518 papC; outer membrane usher protein PapC
D YPK_0052 fimbrial biogenesis outer membrane usher protein K12518 papC; outer membrane usher protein PapC
D YPK_0696 pili assembly chaperone K12519 papD; chaperone protein PapD
D YPK_3509 preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D YPK_4138 protein-export protein SecB K03071 secB; preprotein translocase subunit SecB
D YPK_3262 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D YPK_0333 preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D YPK_3261 protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D YPK_3733 preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D YPK_3510 secretion monitor family proten K13301 secM; secretion monitor
D YPK_0303 preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D YPK_3365 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D YPK_3979 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D YPK_3263 preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D YPK_4246 60 kDa inner membrane insertion protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D YPK_3942 twin-arginine translocation protein, TatA/E family subunit K03116 tatA; sec-independent protein translocase protein TatA
D YPK_3941 twin-arginine translocation protein, TatB subunit K03117 tatB; sec-independent protein translocase protein TatB
D YPK_3940 Sec-independent protein translocase, TatC subunit K03118 tatC; sec-independent protein translocase protein TatC
D YPK_3028 twin-arginine translocation protein, TatA/E family subunit K03425 tatE; sec-independent protein translocase protein TatE
C 02042 Bacterial toxins [BR:ypy02042]
D YPK_3837 conserved hypothetical protein K19298 subB; subtilase cytotoxin, subunit B
D YPK_2615 Cytotoxic necrotizing factor K11008 cnf1; cytotoxic necrotizing factor 1
D YPK_0473 YD repeat protein K11021 tccC; insecticidal toxin complex protein TccC
D YPK_3772 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family
D YPK_3367 protein of unknown function DUF21 K03699 tlyC; magnesium and cobalt exporter, CNNM family
D YPK_2156 filamentous haemagglutinin domain protein K11016 shlA; hemolysin
D YPK_2157 Hemolysin activator HlyB domain protein K11017 shlB; hemolysin activation/secretion protein
D YPK_0873 channel protein, hemolysin III family K11068 hlyIII; hemolysin III
C 02022 Two-component system [BR:ypy02022]
D YPK_3275 PAS/PAC sensor signal transduction histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D YPK_3276 two component transcriptional regulator, winged helix family K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D YPK_1414 two component transcriptional regulator, winged helix family K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D YPK_1714 integral membrane sensor signal transduction histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D YPK_1715 two component transcriptional regulator, winged helix family K07660 phoP; two-component system, OmpR family, response regulator PhoP
D YPK_0173 integral membrane sensor signal transduction histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
D YPK_0172 two component transcriptional regulator, winged helix family K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR
D YPK_1936 integral membrane sensor signal transduction histidine kinase K07639 rstB; two-component system, OmpR family, sensor histidine kinase RstB [EC:2.7.13.3]
D YPK_1937 two component transcriptional regulator, winged helix family K07661 rstA; two-component system, OmpR family, response regulator RstA
D YPK_4133 integral membrane sensor signal transduction histidine kinase K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D YPK_4132 two component transcriptional regulator, winged helix family K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D YPK_0879 integral membrane sensor signal transduction histidine kinase K07641 creC; two-component system, OmpR family, sensor histidine kinase CreC [EC:2.7.13.3]
D YPK_0878 two component transcriptional regulator, winged helix family K07663 creB; two-component system, OmpR family, catabolic regulation response regulator CreB
D YPK_1328 integral membrane sensor signal transduction histidine kinase K07642 baeS; two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3]
D YPK_1327 two component transcriptional regulator, winged helix family K07664 baeR; two-component system, OmpR family, response regulator BaeR
D YPK_3742 integral membrane sensor signal transduction histidine kinase K07643 basS; two-component system, OmpR family, sensor histidine kinase BasS [EC:2.7.13.3]
D YPK_3741 two component transcriptional regulator, winged helix family K07771 basR; two-component system, OmpR family, response regulator BasR
D YPK_2193 heavy metal sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D YPK_2192 two component heavy metal response transcriptional regulator, winged helix family K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
D YPK_1156 osmosensitive K+ channel signal transduction histidine kinase K07646 kdpD; two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3]
D YPK_1155 two component transcriptional regulator, winged helix family K07667 kdpE; two-component system, OmpR family, KDP operon response regulator KdpE
D YPK_0533 multi-sensor hybrid histidine kinase K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D YPK_3606 two component transcriptional regulator, winged helix family K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA
D YPK_1425 integral membrane sensor signal transduction histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D YPK_1424 two component transcriptional regulator, winged helix family K02483 K02483; two-component system, OmpR family, response regulator
D YPK_2232 integral membrane sensor signal transduction histidine kinase K07673 narX; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX [EC:2.7.13.3]
D YPK_1384 two component transcriptional regulator, LuxR family K07685 narP; two-component system, NarL family, nitrate/nitrite response regulator NarP
D YPK_0082 integral membrane sensor signal transduction histidine kinase K07675 uhpB; two-component system, NarL family, sensor histidine kinase UhpB [EC:2.7.13.3]
D YPK_0081 two component transcriptional regulator, LuxR family K07686 uhpA; two-component system, NarL family, uhpT operon response regulator UhpA
D YPK_2499 two component transcriptional regulator, LuxR family K20264 fusR; two-component system, NarL family, response regulator FusR
D YPK_2844 integral membrane sensor hybrid histidine kinase K07677 rcsC; two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]
D YPK_2842 multi-sensor signal transduction histidine kinase K07676 rcsD; two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3]
D YPK_2843 two component transcriptional regulator, LuxR family K07687 rcsB; two-component system, NarL family, captular synthesis response regulator RcsB
D YPK_3451 multi-sensor hybrid histidine kinase K07678 barA; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]
D YPK_2356 two component transcriptional regulator, LuxR family K07689 uvrY; two-component system, NarL family, invasion response regulator UvrY
D YPK_2269 two component transcriptional regulator, LuxR family K07688 fimZ; two-component system, NarL family, response regulator, fimbrial Z protein, FimZ
D YPK_0146 signal transduction histidine kinase, LytS K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D YPK_3358 two component transcriptional regulator, LytTR family K02477 K02477; two-component system, LytTR family, response regulator
D YPK_4190 signal transduction histidine kinase, nitrogen specific, NtrB K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
D YPK_4191 nitrogen metabolism transcriptional regulator, NtrC, Fis Family K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG
D YPK_2908 signal transduction histidine kinase, nitrogen specific, NtrB K07709 zraS; two-component system, NtrC family, sensor histidine kinase HydH [EC:2.7.13.3]
D YPK_2907 two component, sigma54 specific, transcriptional regulator, Fis family K07713 zraR; two-component system, NtrC family, response regulator HydG
D YPK_1257 integral membrane sensor signal transduction histidine kinase K07711 glrK; two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
D YPK_1259 two component, sigma54 specific, transcriptional regulator, Fis family K07715 glrR; two-component system, NtrC family, response regulator GlrR
D YPK_1749 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D YPK_1758 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D YPK_1757 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D YPK_3918 multi-sensor hybrid histidine kinase K14978 ssrA; two-component system, LuxR family, secretion system sensor histidine kinase SsrA
D YPK_3919 two component transcriptional regulator, LuxR family K14979 ssrB; two-component system, LuxR family, secretion system response regulator SsrB
D YPK_0709 sigma54 specific transcriptional regulator, Fis family K10943 flrC; two-component system, response regulator FlrC
D YPK_2078 response regulator receiver protein K02485 rssB; two-component system, response regulator
C 02035 Bacterial motility proteins [BR:ypy02035]
D YPK_1749 CheA signal transduction histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D YPK_1750 CheW protein K03408 cheW; purine-binding chemotaxis protein CheW
D YPK_1756 MCP methyltransferase, CheR-type K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D YPK_1757 response regulator receiver modulated CheB methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D YPK_1758 response regulator receiver protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D YPK_1759 chemotaxis phosphatase, CheZ K03414 cheZ; chemotaxis protein CheZ
D YPK_1597 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03406 mcp; methyl-accepting chemotaxis protein
D YPK_2833 methyl-accepting chemotaxis sensory transducer with Cache sensor K03406 mcp; methyl-accepting chemotaxis protein
D YPK_1753 methyl-accepting chemotaxis sensory transducer K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D YPK_1018 methyl-accepting chemotaxis sensory transducer K05874 tsr; methyl-accepting chemotaxis protein I, serine sensor receptor
D YPK_0034 methyl-accepting chemotaxis sensory transducer K05875 tar; methyl-accepting chemotaxis protein II, aspartate sensor receptor
D YPK_1742 methyl-accepting chemotaxis sensory transducer K05876 trg; methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor
D YPK_1726 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor K03776 aer; aerotaxis receptor
D YPK_2393 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D YPK_0713 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D YPK_2394 ATPase, FliI/YscN family K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D YPK_0714 ATPase, FliI/YscN family K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D YPK_2395 flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ
D YPK_2401 flagellar biosynthesis protein FliO K02418 fliO; flagellar protein FliO/FliZ
D YPK_2402 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D YPK_0706 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D YPK_2403 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D YPK_0705 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D YPK_2404 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D YPK_0704 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D YPK_2431 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D YPK_0702 type III secretion FHIPEP protein K02400 flhA; flagellar biosynthesis protein FlhA
D YPK_2432 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D YPK_0703 flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D YPK_2430 flagellar FlhE family protein K03516 flhE; flagellar protein FlhE
D YPK_2392 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D YPK_0712 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D YPK_2399 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D YPK_0708 flagellar motor switch protein K02416 fliM; flagellar motor switch protein FliM
D YPK_2400 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D YPK_0707 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D YPK_0711 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D YPK_2391 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D YPK_2418 flagellar P-ring protein K02394 flgI; flagellar P-ring protein FlgI
D YPK_2426 flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D YPK_0718 flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA
D YPK_2419 flagellar L-ring protein K02393 flgH; flagellar L-ring protein FlgH
D YPK_2398 flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL
D YPK_2390 flagellar hook-basal body complex subunit FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D YPK_0710 flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D YPK_2396 flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK
D YPK_0729 putative flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK
D YPK_2425 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D YPK_0719 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D YPK_2424 flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D YPK_0720 flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D YPK_0721 flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D YPK_2423 flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D YPK_2421 flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF
D YPK_2420 flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D YPK_2417 flagellar rod assembly protein/muramidase FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ
D YPK_2422 flagellar basal body FlaE domain protein K02390 flgE; flagellar hook protein FlgE
D YPK_2416 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D YPK_2415 flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL
D YPK_0716 conserved hypothetical protein K02399 flgN; flagellar biosynthesis protein FlgN
D YPK_2428 FlgN family protein K02399 flgN; flagellar biosynthesis protein FlgN
D YPK_1348 protein of unknown function UPF0153 K18475 fliB; lysine-N-methylase [EC:2.1.1.-]
D YPK_0726 flagellin domain protein K02406 fliC; flagellin
D YPK_2381 flagellin domain protein K02406 fliC; flagellin
D YPK_0728 flagellin domain protein K02406 fliC; flagellin
D YPK_2382 flagellar hook-associated 2 domain protein K02407 fliD; flagellar hook-associated protein 2
D YPK_2383 flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS
D YPK_2384 flagellar export chaperone K02423 fliT; flagellar protein FliT
D YPK_1745 flagellar transcriptional activator K02403 flhD; flagellar transcriptional activator FlhD
D YPK_1746 flagellar transcriptional activator FlhC K02402 flhC; flagellar transcriptional activator FlhC
D YPK_2380 RNA polymerase, sigma 28 subunit, FliA/WhiG K02405 fliA; RNA polymerase sigma factor FliA
D YPK_1747 chemotaxis protein MotA K02556 motA; chemotaxis protein MotA
D YPK_0730 MotA/TolQ/ExbB proton channel K02556 motA; chemotaxis protein MotA
D YPK_1748 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB
D YPK_0731 OmpA/MotB domain protein K02557 motB; chemotaxis protein MotB
D YPK_0709 sigma54 specific transcriptional regulator, Fis family K10943 flrC; two-component system, response regulator FlrC
D YPK_2376 extracellular solute-binding protein family 3 K02424 tcyA; L-cystine transport system substrate-binding protein
D YPK_2378 integrase domain protein SAM domain protein K02425 fliZ; regulator of sigma S factor FliZ
D YPK_2427 anti-sigma-28 factor, FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
D YPK_0717 putative flagellar regulatory protein K02398 flgM; negative regulator of flagellin synthesis FlgM
D YPK_0833 twitching motility protein K02669 pilT; twitching motility protein PilT
D YPK_1291 type IV pilus biogenesis/stability protein PilW K02656 pilF; type IV pilus assembly protein PilF
D YPK_0687 peptidase A24A prepilin type IV K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D YPK_0686 putative membrane protein K02279 cpaB; pilus assembly protein CpaB
D YPK_0685 type II and III secretion system protein K02280 cpaC; pilus assembly protein CpaC
D YPK_0683 conserved hypothetical protein K02282 cpaE; pilus assembly protein CpaE
D YPK_0682 type II secretion system protein E K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D YPK_1786 Fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D YPK_4042 Fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D YPK_1789 Fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D YPK_1475 Fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D YPK_2272 Fimbrial protein K07345 fimA; major type 1 subunit fimbrin (pilin)
D YPK_1790 pili assembly chaperone K07346 fimC; fimbrial chaperone protein
D YPK_1775 chaperone protein K07346 fimC; fimbrial chaperone protein
D YPK_4043 pili assembly chaperone K07346 fimC; fimbrial chaperone protein
D YPK_4044 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPK_1774 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPK_1788 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPK_2757 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPK_1477 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPK_2274 fimbrial biogenesis outer membrane usher protein K07347 fimD; outer membrane usher protein
D YPK_1777 Spore coat U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D YPK_1773 Spore coat U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D YPK_1776 Spore coat U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
D YPK_1778 Spore coat U domain protein K27078 cupE; spore coat protein U domain-containing protein, fimbrial subunit CupE1/2/3/6
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:ypy04812]
D YPK_0465 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins
D YPK_3513 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D YPK_3514 cell division protein FtsA K03590 ftsA; cell division protein FtsA
D YPK_2121 septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D YPK_2122 septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D YPK_2123 cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor
C 04147 Exosome [BR:ypy04147]
D YPK_3195 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG
D YPK_3446 Phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D YPK_2096 glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D YPK_0852 Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D YPK_1855 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D YPK_2136 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D YPK_0242 peptidyl-prolyl cis-trans isomerase cyclophilin type K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D YPK_3267 alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24]
D YPK_3822 chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D YPK_3594 chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D YPK_0373 Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D YPK_1302 inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D YPK_0332 translation elongation factor Tu K02358 tuf; elongation factor Tu
D YPK_0278 translation elongation factor Tu K02358 tuf; elongation factor Tu
D YPK_1696 histidine triad (HIT) protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D YPK_1994 conserved hypothetical protein K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7
D YPK_3532 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D YPK_2125 AMP-dependent synthetase and ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D YPK_3194 Nucleoside-triphosphate--adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D YPK_3199 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D YPK_0074 phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D YPK_4087 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D YPK_2505 Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D YPK_2867 Aromatic-L-amino-acid decarboxylase K01593 DDC; aromatic-L-amino-acid/L-tryptophan decarboxylase [EC:4.1.1.28 4.1.1.105]
D YPK_3766 Inositol phosphatase/fructose-16-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D YPK_2945 galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D YPK_0147 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D YPK_4113 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D YPK_3381 carbohydrate kinase FGGY K00864 glpK; glycerol kinase [EC:2.7.1.30]
D YPK_4189 glutamine synthetase, type I K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D YPK_3938 Porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D YPK_1946 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D YPK_0859 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D YPK_2773 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D YPK_0357 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D YPK_3489 dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPK_4081 pyridine nucleotide-disulphide oxidoreductase dimerisation region K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D YPK_2134 glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D YPK_4118 Triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D YPK_2948 phosphoglycerate mutase 1 family K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
C 02048 Prokaryotic defense system [BR:ypy02048]
D YPK_1644 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1
D YPK_1645 CRISPR-associated helicase Cas3 family K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
D YPK_1646 CRISPR-associated protein, Csy1 family K19127 csy1; CRISPR-associated protein Csy1
D YPK_1647 CRISPR-associated protein, Csy2 family K19128 csy2; CRISPR-associated protein Csy2
D YPK_1648 CRISPR-associated protein, Csy3 family K19129 csy3; CRISPR-associated protein Csy3
D YPK_1649 CRISPR-associated protein, Csy4 family K19130 csy4; CRISPR-associated endonuclease Csy4 [EC:3.1.-.-]
D YPK_3674 type I site-specific deoxyribonuclease, HsdR family K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D YPK_3666 Type I site-specific deoxyribonuclease K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D YPK_3673 restriction modification system DNA specificity domain K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D YPK_3672 type I restriction-modification system, M subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D YPK_0065 N4/N6-methyltransferase family protein K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D YPK_0228 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D YPK_0181 D12 class N6 adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D YPK_2320 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D YPK_0888 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D YPK_2321 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D YPK_3671 conserved hypothetical protein K19147 mcrC; 5-methylcytosine-specific restriction enzyme subunit McrC
D YPK_0425 RelB antitoxin K07473 dinJ; DNA-damage-inducible protein J
D YPK_1448 conserved hypothetical protein K18843 hicB; antitoxin HicB
D YPK_3214 Haemolysin expression modulating family protein K05839 hha; haemolysin expression modulating protein
D YPK_3213 conserved hypothetical protein K19162 tomB; hha toxicity modulator TomB
D YPK_1896 phage shock protein C, PspC K03973 pspC; phage shock protein C
D YPK_1895 phage shock protein B K03970 pspB; phage shock protein B
D YPK_2388 death-on-curing family protein K07341 doc; death on curing protein
D YPK_3685 conserved hypothetical protein K19334 tabA; biofilm protein TabA
D YPK_1574 conserved hypothetical protein K19334 tabA; biofilm protein TabA
D YPK_1673 conserved hypothetical protein K12148 bssS; biofilm regulator BssS
D YPK_3513 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D YPK_0465 cell shape determining protein, MreB/Mrl family K03569 mreB; rod shape-determining protein MreB and related proteins
D YPK_0662 DNA topoisomerase IV, A subunit K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D YPK_0659 DNA topoisomerase IV, B subunit K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D YPK_1437 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D YPK_3131 protein of unknown function DUF1219 K18837 cbtA; cytoskeleton-binding toxin CbtA and related proteins
D YPK_3132 YagBYeeUYfjZ family protein K18838 cbeA; cytoskeleton bundling-enhancing protein CbeA and related proteins
D YPK_0876 protein of unknown function DUF339 K09159 cptB; antitoxin CptB
D YPK_2115 aminotransferase class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YPK_1276 cysteine desulfurase IscS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels [BR:ypy04040]
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules [BR:ypy04090]
C 01504 Antimicrobial resistance genes [BR:ypy01504]
D YPK_0048 major facilitator superfamily MFS_1 K08160 mdfA; MFS transporter, DHA1 family, multidrug/chloramphenicol efflux transport protein
D YPK_2193 heavy metal sensor signal transduction histidine kinase K07644 cusS; two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
D YPK_2192 two component heavy metal response transcriptional regulator, winged helix family K07665 cusR; two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
D YPK_1714 integral membrane sensor signal transduction histidine kinase K07637 phoQ; two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
D YPK_1715 two component transcriptional regulator, winged helix family K07660 phoP; two-component system, OmpR family, response regulator PhoP
D YPK_3719 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D YPK_3207 efflux transporter, RND family, MFP subunit K03585 acrA; membrane fusion protein, multidrug efflux system
D YPK_3208 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump
D YPK_3718 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump
D YPK_0739 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family K18138 acrB; multidrug efflux pump
D YPK_3717 RND efflux system, outer membrane lipoprotein, NodT family K18139 oprM; outer membrane protein, multidrug efflux system
D YPK_3164 transcriptional regulator, MerR family K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D YPK_0654 type I secretion outer membrane protein, TolC family K12340 tolC; outer membrane protein
D YPK_2649 porin Gram-negative type K09476 ompF; outer membrane pore protein F
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins [BR:ypy00536]
D YPK_1622 filamentous haemagglutinin family outer membrane protein K15125 fhaB; filamentous hemagglutinin
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:ypy00537]
D YPK_1946 Alkaline phosphatase K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:ypy03100]
D YPK_R0004 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YPK_R0060 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YPK_R0047 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YPK_R0078 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YPK_R0079 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YPK_R0061 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YPK_R0042 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YPK_R0019 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YPK_R0055 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YPK_R0056 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YPK_R0057 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YPK_R0058 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YPK_R0024 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D YPK_R0026 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D YPK_R0025 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D YPK_R0013 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D YPK_R0040 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D YPK_R0014 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D YPK_R0073 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D YPK_R0030 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D YPK_R0031 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D YPK_R0033 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D YPK_R0009 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D YPK_R0038 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D YPK_R0012 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D YPK_R0039 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D YPK_R0007 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YPK_R0011 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YPK_R0048 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YPK_R0050 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YPK_R0049 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YPK_R0072 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YPK_R0043 tRNA-His K14226 tRNA-His; tRNA His
D YPK_R0003 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D YPK_R0046 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D YPK_R0059 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D YPK_R0051 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPK_R0029 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPK_R0053 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPK_R0044 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPK_R0034 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPK_R0035 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPK_R0036 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPK_R0074 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YPK_R0018 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YPK_R0065 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YPK_R0064 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YPK_R0062 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YPK_R0063 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YPK_R0071 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YPK_R0066 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YPK_R0067 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YPK_R0028 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPK_R0032 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPK_R0084 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPK_R0052 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPK_R0080 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPK_R0081 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPK_R0082 tRNA-Met K14230 tRNA-Met; tRNA Met
D YPK_R0037 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D YPK_R0083 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D YPK_R0002 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D YPK_R0045 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D YPK_R0027 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D YPK_R0070 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YPK_R0054 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YPK_R0068 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YPK_R0022 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YPK_R0023 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YPK_R0008 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D YPK_R0010 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D YPK_R0005 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D YPK_R0069 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D YPK_R0041 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D YPK_R0006 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D YPK_R0020 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D YPK_R0021 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D YPK_R0015 tRNA-Val K14237 tRNA-Val; tRNA Val
D YPK_R0017 tRNA-Val K14237 tRNA-Val; tRNA Val
D YPK_R0016 tRNA-Val K14237 tRNA-Val; tRNA Val
D YPK_R0075 tRNA-Val K14237 tRNA-Val; tRNA Val
D YPK_R0076 tRNA-Val K14237 tRNA-Val; tRNA Val
D YPK_R0077 tRNA-Val K14237 tRNA-Val; tRNA Val
D YPK_R0001 tRNA-Sec K14238 tRNA-Sec; tRNA Sec
D YPK_R0085 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPK_R0089 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPK_R0090 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPK_R0091 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPK_R0086 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPK_R0087 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPK_R0088 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YPK_R0098 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPK_R0094 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPK_R0097 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPK_R0096 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPK_R0095 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPK_R0092 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YPK_R0093 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D YPK_1576 short-chain dehydrogenase/reductase SDR K00046 idnO; gluconate 5-dehydrogenase [EC:1.1.1.69]
D YPK_0667 2,5-didehydrogluconate reductase K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346]
D YPK_3075 2,5-didehydrogluconate reductase K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346]
D YPK_1101 aldo/keto reductase K06222 dkgB; 2,5-diketo-D-gluconate reductase B [EC:1.1.1.346]
D YPK_2014 NAD-dependent epimerase/dehydratase K22025 denD; D-erythronate 2-dehydrogenase [EC:1.1.1.410]
D YPK_2519 Glycerol dehydrogenase K08317 hcxA; hydroxycarboxylate dehydrogenase A [EC:1.1.1.-]
D YPK_1441 aldo/keto reductase K19265 gpr; L-glyceraldehyde 3-phosphate reductase [EC:1.1.1.-]
D YPK_1610 Alcohol dehydrogenase zinc-binding domain protein K23271 eltD; erythritol/L-threitol dehydrogenase [EC:1.1.1.-]
D YPK_3421 Alcohol dehydrogenase zinc-binding domain protein K23271 eltD; erythritol/L-threitol dehydrogenase [EC:1.1.1.-]
D YPK_3866 Berberine/berberine domain protein K26080 E1.1.3.29; N-acylhexosamine oxidase [EC:1.1.3.29]
D YPK_1650 aldo/keto reductase K23107 yajO; 1-deoxyxylulose-5-phosphate synthase [EC:1.1.-.-]
D YPK_0563 NADH:flavin oxidoreductase/NADH oxidase K00219 fadH; 2,4-dienoyl-CoA reductase (NADPH2) [EC:1.3.1.34]
D YPK_1672 Sarcosine oxidase K02846 solA; N-methyl-L-tryptophan oxidase [EC:1.5.3.-]
D YPK_3856 Alcohol dehydrogenase zinc-binding domain protein K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D YPK_1737 NAD(P)H quinone oxidoreductase, PIG3 family K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D YPK_0661 NAD(P)H dehydrogenase (quinone) K03923 mdaB; NADPH dehydrogenase (quinone) [EC:1.6.5.10]
D YPK_1924 NAD(P)H dehydrogenase (quinone) K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17]
D YPK_3771 peptide methionine sulfoxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D YPK_2095 methionine-R-sulfoxide reductase K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D YPK_0437 Glutathione S-transferase domain K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-]
D YPK_0543 putative glutathione S-transferase K07393 ECM4; glutathionyl-hydroquinone reductase [EC:1.8.5.7]
D YPK_0462 oxidoreductase molybdopterin binding K07147 msrP; methionine sulfoxide reductase catalytic subunit [EC:1.8.-.-]
D YPK_3390 cytochrome B561 K12262 cybB; superoxide oxidase [EC:1.10.3.17]
D YPK_3411 Cytochrome-c peroxidase K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5]
D YPK_1360 Peroxiredoxin K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D YPK_1903 Redoxin domain protein K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D YPK_1399 Dyp-type peroxidase family K07223 yfeX; porphyrinogen peroxidase [EC:1.11.1.-]
D YPK_0133 Pirin domain protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D YPK_2105 Pirin domain protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D YPK_1264 globin K05916 hmp; nitric oxide dioxygenase [EC:1.14.12.17]
D YPK_1619 Rieske (2Fe-2S) domain protein K22443 cntA; carnitine monooxygenase subunit [EC:1.14.13.239]
D YPK_1620 ferredoxin K22444 cntB; carnitine monooxygenase subunit [EC:1.14.13.239]
D YPK_2546 L-lysine 6-monooxygenase (NADPH) K27501 alcA; putrescine N-hydroxylase [EC:1.14.13.252]
D YPK_2438 Ferroxidase K02217 ftnA; ferritin [EC:1.16.3.2]
D YPK_3480 multicopper oxidase type 3 K14588 cueO; cuproxidase [EC:1.16.3.4]
D YPK_4115 oxidoreductase FAD/NAD(P)-binding domain protein K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D YPK_1355 arsenate reductase K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1]
D YPK_3692 anaerobic ribonucleoside-triphosphate reductase activating protein K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4]
D YPK_2679 pyruvate formate-lyase activating enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D YPK_2702 ferredoxin K11933 hcr; NADH oxidoreductase Hcr [EC:1.-.-.-]
D YPK_3427 protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D YPK_1858 Cyclopropane-fatty-acyl-phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D YPK_1603 Trans-aconitate 2-methyltransferase K00598 tam; trans-aconitate 2-methyltransferase [EC:2.1.1.144]
D YPK_2243 tellurite resistance protein TehB K16868 tehB; tellurite methyltransferase [EC:2.1.1.265]
D YPK_3885 Coproporphyrinogen dehydrogenase K21936 chuW; anaerobilin synthase [EC:2.1.1.342]
D YPK_3009 apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D YPK_3713 GCN5-related N-acetyltransferase K03824 yhbS; putative acetyltransferase [EC:2.3.1.-]
D YPK_0020 GCN5-related N-acetyltransferase K03826 yiaC; putative acetyltransferase [EC:2.3.1.-]
D YPK_3682 GCN5-related N-acetyltransferase K03828 yjgM; putative acetyltransferase [EC:2.3.1.-]
D YPK_4041 glutamine cyclotransferase K22757 QCT; glutaminyl-peptide cyclotransferase [EC:2.3.2.5]
D YPK_2690 Leucyltransferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6]
D YPK_0587 conserved hypothetical protein K21298 E2.4.1.333; 1,2-beta-oligoglucan phosphorylase [EC:2.4.1.333]
D YPK_1637 glycosidase PH1107-related K20885 K20885; beta-1,2-mannobiose phosphorylase / 1,2-beta-oligomannan phosphorylase [EC:2.4.1.339 2.4.1.340]
D YPK_3342 DTW domain containing protein K05812 DTWD2; tRNA-uridine aminocarboxypropyltransferase [EC:2.5.1.25]
D YPK_1035 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D YPK_3299 ApbE family lipoprotein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D YPK_2826 type III effector Hrp-dependent outers K21948 otnK; 3-dehydrotetronate 4-kinase [EC:2.7.1.217]
D YPK_1842 protein of unknown function DUF299 K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33]
D YPK_1204 DNA-directed DNA polymerase K02334 dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]
D YPK_0644 (Glutamate--ammonia-ligase) adenylyltransferase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]
D YPK_1840 protein of unknown function UPF0061 K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108]
D YPK_0366 (Isocitrate dehydrogenase (NADP(+))) kinase K00906 aceK; isocitrate dehydrogenase kinase/phosphatase [EC:2.7.11.5 3.1.3.-]
D YPK_2960 tol-pal system-associated acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D YPK_2041 PHP domain protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D YPK_1511 phosphohistidine phosphatase, SixA K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D YPK_2785 diguanylate phosphodiesterase K26148 K26148; c-di-GMP phosphodiesterase [EC:3.1.4.52]
D YPK_0094 diguanylate cyclase/phosphodiesterase K26149 K26149; c-di-GMP phosphodiesterase [EC:3.1.4.52]
D YPK_0984 sulfatase K01138 K01138; uncharacterized sulfatase [EC:3.1.6.-]
D YPK_1378 sulfatase K01138 K01138; uncharacterized sulfatase [EC:3.1.6.-]
D YPK_0996 sulfatase K01138 K01138; uncharacterized sulfatase [EC:3.1.6.-]
D YPK_0841 Deoxyribonuclease I K01150 endA; deoxyribonuclease I [EC:3.1.21.1]
D YPK_3939 TatD-related deoxyribonuclease K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D YPK_3629 TatD-related deoxyribonuclease K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D YPK_1693 hydrolase, TatD family K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D YPK_2986 alpha/beta hydrolase fold K01175 ybfF; esterase [EC:3.1.-.-]
D YPK_3290 protein of unknown function DUF1100 hydrolase family protein K11750 frsA; esterase FrsA [EC:3.1.-.-]
D YPK_0093 Cellulase K20542 bcsZ; endoglucanase [EC:3.2.1.4]
D YPK_0972 Arabinogalactan endo-1,4-beta-galactosidase K01224 E3.2.1.89; arabinogalactan endo-1,4-beta-galactosidase [EC:3.2.1.89]
D YPK_1760 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D YPK_0316 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D YPK_2502 polysaccharide deacetylase K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104]
D YPK_1148 YdjC family protein K03478 chbG; chitin disaccharide deacetylase [EC:3.5.1.105]
D YPK_2444 protein of unknown function DUF437 K09900 E3.5.1.135; N4-acetylcytidine amidohydrolase [EC:3.5.1.135]
D YPK_0498 endoribonuclease L-PSP K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D YPK_0643 adenylate cyclase K18446 ygiF; triphosphatase [EC:3.6.1.25]
D YPK_3225 Cof-like hydrolase K11938 cof; HMP-PP phosphatase [EC:3.6.1.-]
D YPK_1390 NUDIX hydrolase K12945 nudK; GDP-mannose pyrophosphatase NudK [EC:3.6.1.-]
D YPK_1680 maf protein K25422 yceF; 7-methyl-GTP pyrophosphatase [EC:3.6.1.-]
D YPK_4212 ATPase associated with various cellular activities AAA_5 K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D YPK_2825 class II aldolase/adducin family protein K22130 otnC; 3-dehydro-4-phosphotetronate decarboxylase [EC:4.1.1.104]
D YPK_2019 transaldolase K08313 fsaA; fructose-6-phosphate aldolase 1 [EC:4.1.2.-]
D YPK_3804 carbohydrate kinase, YjeF related protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D YPK_0997 Lyase catalytic K08961 K08961; chondroitin-sulfate-ABC endolyase/exolyase [EC:4.2.2.20 4.2.2.21]
D YPK_1050 cysteine desulfurase, catalytic subunit CsdA K01766 csdA; cysteine sulfinate desulfinase [EC:4.4.1.-]
D YPK_2362 Kelch repeat-containing protein K17948 nanM; N-acetylneuraminate epimerase [EC:5.1.3.24]
D YPK_3849 L-rhamnose 1-epimerase K03534 rhaM; L-rhamnose mutarotase [EC:5.1.3.32]
D YPK_2823 Hydroxypyruvate isomerase K22131 otnI; 2-dehydrotetronate isomerase [EC:5.3.1.35]
D YPK_3765 UDP-N-acetylmuramate K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45]
D YPK_2010 electron transport complex, RnfABCDGE type, D subunit K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2]
D YPK_2008 electron transport complex, RnfABCDGE type, C subunit K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2]
D YPK_2007 electron transport complex, RnfABCDGE type, B subunit K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2]
D YPK_3305 NADH:ubiquinone oxidoreductase, subunit A K00346 nqrA; Na+-transporting NADH:ubiquinone oxidoreductase subunit A [EC:7.2.1.1]
D YPK_3304 NADH:ubiquinone oxidoreductase, subunit B K00347 nqrB; Na+-transporting NADH:ubiquinone oxidoreductase subunit B [EC:7.2.1.1]
D YPK_3303 NADH:ubiquinone oxidoreductase, subunit C K00348 nqrC; Na+-transporting NADH:ubiquinone oxidoreductase subunit C [EC:7.2.1.1]
D YPK_3302 NADH:ubiquinone oxidoreductase, subunit D K00349 nqrD; Na+-transporting NADH:ubiquinone oxidoreductase subunit D [EC:7.2.1.1]
D YPK_3301 NADH:ubiquinone oxidoreductase, subunit E K00350 nqrE; Na+-transporting NADH:ubiquinone oxidoreductase subunit E [EC:7.2.1.1]
D YPK_2258 NADH:ubiquinone oxidoreductase, subunit E K00350 nqrE; Na+-transporting NADH:ubiquinone oxidoreductase subunit E [EC:7.2.1.1]
D YPK_3300 NADH:ubiquinone oxidoreductase, subunit F K00351 nqrF; Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:7.2.1.1]
D YPK_3985 heavy metal translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]
D YPK_1744 magnesium-translocating P-type ATPase K01531 mgtA; P-type Mg2+ transporter [EC:7.2.2.14]
C 99981 Carbohydrate metabolism
D YPK_3467 sugar fermentation stimulation protein K06206 sfsA; sugar fermentation stimulation protein A
C 99982 Energy metabolism
D YPK_0036 formate dehydrogenase family accessory protein FdhD K02379 fdhD; FdhD protein
D YPK_1281 ferredoxin, 2Fe-2S type, ISC system K04755 fdx; ferredoxin, 2Fe-2S
D YPK_2850 ferredoxin K11107 yfaE; ferredoxin
D YPK_2011 electron transport complex, RnfABCDGE type, G subunit K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G
D YPK_2012 electron transport complex, RnfABCDGE type, E subunit K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E
D YPK_2006 electron transport complex, RnfABCDGE type, A subunit K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A
D YPK_3830 4Fe-4S ferredoxin iron-sulfur binding domain protein K05796 hydN; electron transport protein HydN
D YPK_4216 flavodoxin/nitric oxide synthase K06205 mioC; MioC protein
D YPK_0881 flavodoxin K03840 fldB; flavodoxin II
D YPK_1277 FeS cluster assembly scaffold IscU K04488 iscU; nitrogen fixation protein NifU and related proteins
D YPK_0492 cytochrome b562 K15536 cybC; soluble cytochrome b562
D YPK_3389 cytochrome b562 K15536 cybC; soluble cytochrome b562
D YPK_1386 NapD family protein K02570 napD; periplasmic nitrate reductase NapD
D YPK_1385 ferredoxin-type protein NapF K02572 napF; ferredoxin-type protein NapF
D YPK_2990 flavodoxin K03839 fldA; flavodoxin I
D YPK_1389 periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family K02569 napC; cytochrome c-type protein NapC
C 99983 Lipid metabolism
D YPK_3788 acyl-CoA dehydrogenase domain protein K09456 aidB; putative acyl-CoA dehydrogenase
C 99984 Nucleotide metabolism
D YPK_1118 NrdI protein K03647 nrdI; protein involved in ribonucleotide reduction
C 99985 Amino acid metabolism
D YPK_1430 protein of unknown function DUF540 K06203 cysZ; CysZ protein
D YPK_1083 Glyoxalase/bleomycin resistance protein/dioxygenase K08234 yaeR; glyoxylase I family protein
D YPK_1905 peptidase M14 carboxypeptidase A K14054 mpaA; murein peptide amidase A
D YPK_0832 alanine racemase domain protein K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
D YPK_2027 protein of unknown function DUF1049 K08992 lapA; lipopolysaccharide assembly protein A
D YPK_2026 Tetratricopeptide TPR_2 repeat protein K19804 lapB; lipopolysaccharide assembly protein B
D YPK_2678 glycosyl transferase family 25 K07270 K07270; glycosyl transferase, family 25
C 99987 Cofactor metabolism
D YPK_4019 HemY protein K02498 hemY; HemY protein
D YPK_3943 2-polyprenylphenol 6-hydroxylase K03688 ubiB; ubiquinone biosynthesis protein
D YPK_3944 Sterol-binding domain protein K03690 ubiJ; ubiquinone biosynthesis accessory factor UbiJ
D YPK_0647 protein of unknown function DUF526 K09806 ubiK; ubiquinone biosynthesis accessory factor UbiK
D YPK_3714 Sterol-binding domain protein K24843 ubiT; O2-independent ubiquinone biosynthesis accessory factor UbiT
D YPK_4200 molybdopterin-guanine dinucleotide biosynthesis protein B K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein
D YPK_0748 AbgT putative transporter K12942 abgT; aminobenzoyl-glutamate transport protein
C 99988 Secondary metabolism
D YPK_0665 multicopper oxidase type 3 K04753 sufI; suppressor of ftsI
C 99999 Others
D YPK_0544 DoxX family protein K15977 K15977; putative oxidoreductase
D YPK_3343 GCN5-related N-acetyltransferase K09181 yfiQ; acetyltransferase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D YPK_0488 Barstar (barnase inhibitor) K03623 yhcO; ribonuclease inhibitor
D YPK_2694 cold-shock DNA-binding domain protein K03704 cspA; cold shock protein
D YPK_3031 cold-shock DNA-binding domain protein K03704 cspA; cold shock protein
D YPK_1124 cold-shock DNA-binding domain protein K03704 cspA; cold shock protein
D YPK_1740 cold-shock DNA-binding domain protein K03704 cspA; cold shock protein
D YPK_2474 cold-shock DNA-binding domain protein K03704 cspA; cold shock protein
D YPK_2662 cold-shock DNA-binding domain protein K03704 cspA; cold shock protein
D YPK_0442 cold-shock DNA-binding domain protein K03704 cspA; cold shock protein
D YPK_0443 cold-shock DNA-binding domain protein K03704 cspA; cold shock protein
D YPK_0444 cold-shock DNA-binding domain protein K03704 cspA; cold shock protein
D YPK_0348 regulator of RpoD, Rsd/AlgQ K07740 rsd; regulator of sigma D
D YPK_3750 AntA/AntB antirepressor domain protein K07741 antB; anti-repressor protein
D YPK_0617 AntA/AntB antirepressor domain protein K07741 antB; anti-repressor protein
D YPK_3220 nitrogen regulatory protein P-II K04752 glnK; nitrogen regulatory protein P-II 2
D YPK_0170 RNA binding S1 domain protein K06959 tex; protein Tex
C 99974 Translation
C 99975 Protein processing
D YPK_1917 protein of unknown function DUF306 Meta and HslJ K03668 hslJ; heat shock protein HslJ
D YPK_2693 ATP-dependent Clp protease adaptor protein ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D YPK_3235 trigger factor K03545 tig; trigger factor
D YPK_0461 Ferric reductase domain protein transmembrane component domain K17247 msrQ; methionine sulfoxide reductase heme-binding subunit
D YPK_0041 formate dehydrogenase accessory protein FdhE K02380 fdhE; FdhE protein
D YPK_1134 UreE urease accessory domain protein K03187 ureE; urease accessory protein
D YPK_1135 Urease accessory protein UreF K03188 ureF; urease accessory protein
D YPK_1136 urease accessory protein UreG K03189 ureG; urease accessory protein
D YPK_1137 Urease accessory protein UreD K03190 ureD; urease accessory protein
D YPK_2980 SsrA-binding protein K03664 smpB; SsrA-binding protein
D YPK_1119 glutaredoxin-like protein NrdH K06191 nrdH; glutaredoxin-like protein NrdH
D YPK_4062 Mg chelatase, subunit ChlI K07391 comM; magnesium chelatase family protein
D YPK_1019 conserved hypothetical protein K07396 K07396; putative protein-disulfide isomerase
D YPK_0606 putative protein-disulfide isomerase K07396 K07396; putative protein-disulfide isomerase
D YPK_0249 OsmC family protein K07397 yhfA; putative redox protein
D YPK_0163 IscR-regulated protein YhgI K07400 nfuA; Fe/S biogenesis protein NfuA
D YPK_3915 type III secretion system protein, YseE family K18984 ssaE; secretion system chaperone SsaE
C 99976 Replication and repair
D YPK_3215 methylated-DNA--protein-cysteine methyltransferase K07443 ybaZ; methylated-DNA-protein-cysteine methyltransferase related protein
D YPK_1055 5'-3' exonuclease K01146 xni; protein Xni
D YPK_3143 hypothetical protein K07454 K07454; putative restriction endonuclease
D YPK_4155 DNA repair protein RadC K03630 radC; DNA repair protein RadC
D YPK_3133 DNA repair protein RadC K03630 radC; DNA repair protein RadC
D YPK_3946 protein of unknown function DUF195 K09760 rmuC; DNA recombination protein RmuC
D YPK_2699 conserved hypothetical protein K07459 ybjD; putative ATP-dependent endonuclease of the OLD family
D YPK_3144 SMC (structural maintenance of chromosomes) family protein K07459 ybjD; putative ATP-dependent endonuclease of the OLD family
D YPK_0538 protein of unknown function UPF0102 K07460 yraN; putative endonuclease
D YPK_3712 Excinuclease ABC C subunit domain protein K07461 K07461; putative endonuclease
D YPK_0317 DNA protecting protein DprA K04096 smf; DNA processing protein
D YPK_3746 putative phage terminase, small subunit K07474 xtmA; phage terminase small subunit
D YPK_1220 Terminase small subunit K07474 xtmA; phage terminase small subunit
D YPK_0613 putative phage terminase, small subunit K07474 xtmA; phage terminase small subunit
D YPK_1222 conserved hypothetical protein K06909 xtmB; phage terminase large subunit
D YPK_2683 AAA ATPase central domain protein K07478 ycaJ; putative ATPase
D YPK_0319 DNA topoisomerase type IA zn finger domain protein K07479 yrdD; putative DNA topoisomerase
D YPK_0945 P4 alpha zinc-binding domain protein K06919 K06919; putative DNA primase/helicase
D YPK_0622 phage/plasmid primase, P4 family K06919 K06919; putative DNA primase/helicase
D YPK_3838 IS1 transposase K07480 insB; insertion element IS1 protein InsB
D YPK_0808 Insertion element protein K07489 K07489; transposase
D YPK_0279 transposase IS200-family protein K07491 rayT; REP-associated tyrosine transposase
D YPK_3209 transposase IS200-family protein K07491 rayT; REP-associated tyrosine transposase
D YPK_3173 transposase IS200-family protein K07491 rayT; REP-associated tyrosine transposase
D YPK_2889 transposase IS200-family protein K07491 rayT; REP-associated tyrosine transposase
D YPK_2631 transposase IS200-family protein K07491 rayT; REP-associated tyrosine transposase
D YPK_2234 transposase IS200-family protein K07491 rayT; REP-associated tyrosine transposase
D YPK_0848 transposase IS200-family protein K07491 rayT; REP-associated tyrosine transposase
D YPK_1679 transposase IS200-family protein K07491 rayT; REP-associated tyrosine transposase
D YPK_2995 transposase IS200-family protein K07491 rayT; REP-associated tyrosine transposase
D YPK_3316 transposase IS200-family protein K07491 rayT; REP-associated tyrosine transposase
D YPK_3488 transposase IS200-family protein K07491 rayT; REP-associated tyrosine transposase
D YPK_2533 transposase IS200-family protein K07491 rayT; REP-associated tyrosine transposase
D YPK_3506 transposase IS200-family protein K07491 rayT; REP-associated tyrosine transposase
D YPK_0846 transposase IS200-family protein K07491 rayT; REP-associated tyrosine transposase
D YPK_1806 transposase mutator type K07493 K07493; putative transposase
D YPK_3068 transposase mutator type K07493 K07493; putative transposase
D YPK_4201 transposase mutator type K07493 K07493; putative transposase
D YPK_0427 transposase mutator type K07493 K07493; putative transposase
D YPK_2292 transposase mutator type K07493 K07493; putative transposase
D YPK_3926 transposase IS3/IS911 family protein K07497 K07497; putative transposase
D YPK_0067 Integrase catalytic region K07497 K07497; putative transposase
D YPK_3925 Integrase catalytic region K07497 K07497; putative transposase
D YPK_1624 transposase IS3/IS911 family protein K07497 K07497; putative transposase
D YPK_0216 Transposase-like Mu K07497 K07497; putative transposase
D YPK_2982 transposase IS3/IS911 family protein K07497 K07497; putative transposase
D YPK_2286 putative transposase K07497 K07497; putative transposase
D YPK_0066 transposase IS3/IS911 family protein K07497 K07497; putative transposase
C 99979 Viral proteins
C 99998 Others
D YPK_1894 phage shock protein A, PspA K03969 pspA; phage shock protein A
D YPK_1897 phage shock protein PspD K03971 pspD; phage shock protein D
D YPK_3197 conserved hypothetical protein K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D YPK_4021 amino acid permease-associated region K03293 TC.AAT; amino acid transporter, AAT family
D YPK_1618 cyclic nucleotide-binding protein K03451 TC.BCT; betaine/carnitine transporter, BCCT family
D YPK_1886 amino acid/peptide transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D YPK_1664 amino acid/peptide transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D YPK_1420 Na+/solute symporter K03307 TC.SSS; solute:Na+ symporter, SSS family
D YPK_3273 branched-chain amino acid transport system II carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family
D YPK_1110 permease for cytosine/purines uracil thiamine allantoin K03457 TC.NCS1; nucleobase:cation symporter-1, NCS1 family
D YPK_3628 nucleoside transporter K03317 TC.CNT; concentrative nucleoside transporter, CNT family
D YPK_4122 anion transporter K03319 TC.DASS; divalent anion:Na+ symporter, DASS family
D YPK_2734 YidE/YbjL duplication K07085 K07085; putative transport protein
D YPK_0013 YidE/YbjL duplication K07085 K07085; putative transport protein
C 99978 Cell growth
D YPK_2053 intracellular septation protein A K06190 ispZ; intracellular septation protein
D YPK_3988 putative lipoprotein K27311 dcrB; inner membrane lipoprotein DcrB
D YPK_3777 protein of unknown function DUF542 ScdA domain protein K07322 ytfE; regulator of cell morphogenesis and NO signaling
D YPK_2108 SpoVR family protein K06415 spoVR; stage V sporulation protein R
D YPK_4142 peptidase M23B K22719 envC; murein hydrolase activator
C 99993 Cell motility
D YPK_1698 membrane lipoprotein lipid attachment site K07337 K07337; penicillin-binding protein activator
D YPK_2628 regulator of competence-specific genes K07343 tfoX; DNA transformation protein and related proteins
D YPK_1787 pili assembly chaperone K15540 ecpD; chaperone protein EcpD
D YPK_1476 pili assembly chaperone K15540 ecpD; chaperone protein EcpD
D YPK_1058 Syd family protein K15723 syd; SecY interacting protein Syd
C 99995 Signaling proteins
D YPK_3495 signaling modulator of AmpD, AmpE K03807 ampE; AmpE protein
D YPK_3876 stress protein K05792 terA; tellurite resistance protein TerA
D YPK_3872 stress protein K05795 terD; tellurium resistance protein TerD
D YPK_3873 stress protein K05795 terD; tellurium resistance protein TerD
D YPK_3877 stress protein K05791 terZ; tellurium resistance protein TerZ
D YPK_1782 ProQ activator of osmoprotectant transporter ProP K03607 proQ; ProP effector
D YPK_0120 UspA domain protein K06149 uspA; universal stress protein A
D YPK_1943 UspA domain protein K14055 uspE; universal stress protein E
D YPK_2017 carbon starvation protein CstA K06200 cstA; carbon starvation protein
D YPK_3948 carbon starvation protein CstA K06200 cstA; carbon starvation protein
D YPK_4188 GTP-binding protein TypA K06207 typA; GTP-binding protein
D YPK_2235 PhoH family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D YPK_3006 PhoH family protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D YPK_2100 putative serine protein kinase, PrkA K07180 prkA; serine protein kinase
D YPK_0642 SH3 domain protein K07184 ygiM; SH3 domain protein
D YPK_3623 putative membrane protein Smp K07186 smp; membrane protein
D YPK_3247 protein of unknown function DUF520 K09767 yajQ; cyclic-di-GMP-binding protein
C 99992 Structural proteins
D YPK_2684 outer membrane lipoprotein carrier protein LolA K03634 lolA; outer membrane lipoprotein carrier protein
D YPK_2181 outer membrane lipoprotein LolB K02494 lolB; outer membrane lipoprotein LolB
D YPK_1505 VacJ family lipoprotein K04754 mlaA; phospholipid-binding lipoprotein MlaA
D YPK_4032 lipopolysaccharide biosynthesis protein K05790 wzzE; lipopolysaccharide biosynthesis protein WzzE
D YPK_1877 17 kDa surface antigen K06077 slyB; outer membrane lipoprotein SlyB
D YPK_0736 17 kDa surface antigen K06077 slyB; outer membrane lipoprotein SlyB
D YPK_0445 17 kDa surface antigen K06077 slyB; outer membrane lipoprotein SlyB
D YPK_1075 outer membrane chaperone Skp (OmpH) K06142 hlpA; outer membrane protein
D YPK_3426 peptidase M23B K06194 nlpD; lipoprotein NlpD
D YPK_3725 TPR repeat-containing protein K05803 nlpI; lipoprotein NlpI
D YPK_2049 OmpW family protein K07275 ompW; outer membrane protein
D YPK_3360 protein of unknown function DUF481 K07283 ydiY; putative salt-induced outer membrane protein
D YPK_2126 outer membrane lipoprotein, Slp family K07285 slp; outer membrane lipoprotein
D YPK_3238 Uncharacterized lipoprotein K07286 yajG; uncharacterized lipoprotein
D YPK_2550 AsmA family protein K07289 asmA; AsmA protein
D YPK_0104 AsmA family protein K07290 yhjG; AsmA family protein
D YPK_3163 protein of unknown function DUF107 K07340 ybbJ; inner membrane protein
D YPK_2575 efflux transporter, RND family, MFP subunit K02005 ABC.CD.TX; HlyD family secretion protein
D YPK_1669 protein of unknown function UPF0118 K11744 tqsA; AI-2 transport protein TqsA
D YPK_2022 osmotically inducible lipoprotein B precursor K04062 osmB; osmotically inducible lipoprotein OsmB
D YPK_0880 Inner membrane CreD family protein K06143 creD; inner membrane protein
D YPK_1500 CcmE/CycJ protein K02197 ccmE; cytochrome c-type biogenesis protein CcmE
D YPK_1503 cytochrome C biogenesis protein K02200 ccmH; cytochrome c-type biogenesis protein CcmH
D YPK_1292 transcriptional regulator, XRE family K15539 rodZ; cytoskeleton protein RodZ
D YPK_0483 protein of unknown function DUF1656 K21695 aaeX; protein AaeX
D YPK_0564 conserved hypothetical protein K21908 hdeD; membrane protein HdeD
C 99994 Others
D YPK_4235 phosphate uptake regulator, PhoU K02039 phoU; phosphate transport system protein
D YPK_0280 BFD domain protein (2Fe-2S)-binding domain protein K02192 bfd; bacterioferritin-associated ferredoxin
D YPK_1661 periplasmic glucan biosynthesis protein MdoG K03670 mdoG; periplasmic glucans biosynthesis protein
D YPK_3875 Tellurite resistance TerB K05793 terB; tellurite resistance protein TerB
D YPK_3874 Integral membrane protein TerC K05794 terC; tellurite resistance protein TerC
D YPK_3827 CutA1 divalent ion tolerance protein K03926 cutA; periplasmic divalent cation tolerance protein
D YPK_2153 CutC family protein K06201 cutC; copper homeostasis protein
D YPK_3698 phosphonate C-P lyase system protein PhnK K05781 phnK; putative phosphonate transport system ATP-binding protein
D YPK_3574 ApaG domain protein K06195 apaG; ApaG protein
D YPK_4013 iron donor protein CyaY K06202 cyaY; iron-sulfur cluster assembly protein CyaY
D YPK_3890 Haemin-degrading family protein K07225 hmuS; putative hemin transport protein
D YPK_3886 protein of unknown function DUF1008 K07227 chuX; heme iron utilization protein
D YPK_3205 DsrE family protein K06039 ychN; uncharacterized protein involved in oxidation of intracellular sulfur
B
B 09194 Poorly characterized
C 99996 General function prediction only
D YPK_1534 Colicin V production protein K03558 cvpA; membrane protein required for colicin V production
D YPK_0199 putative endolysin K03791 K03791; putative chitinase
D YPK_2638 Mammalian cell entry related domain protein K06192 pqiB; paraquat-inducible protein B
D YPK_3345 putative lipoprotein K05811 yfiM; putative lipoprotein
D YPK_3632 transport-associated K04065 osmY; hyperosmotically inducible periplasmic protein
D YPK_2165 PHP domain protein K04477 ycdX; putative hydrolase
D YPK_1174 formate C-acetyltransferase glycine radical K06866 grcA; autonomous glycyl radical cofactor
D YPK_3457 iron-sulfur cluster assembly accessory protein K15724 erpA; iron-sulfur cluster insertion protein
D YPK_1847 FeS assembly scaffold SufA K05997 sufA; Fe-S cluster assembly protein SufA
D YPK_1848 FeS assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB
D YPK_1850 FeS assembly protein SufD K09015 sufD; Fe-S cluster assembly protein SufD
D YPK_1380 membrane-bound metal-dependent hydrolase K07038 K07038; inner membrane protein
D YPK_1796 membrane-bound metal-dependent hydrolase K07038 K07038; inner membrane protein
D YPK_0106 ribonuclease K07058 K07058; membrane protein
D YPK_4186 ribonuclease BN K07058 K07058; membrane protein
D YPK_3824 FxsA cytoplasmic membrane protein K07113 fxsA; UPF0716 protein FxsA
D YPK_1852 Fe-S metabolism associated SufE K02426 sufE; cysteine desulfuration protein SufE
D YPK_1049 cysteine desulfurase, sulfur acceptor subunit CsdE K02426 sufE; cysteine desulfuration protein SufE
D YPK_1668 Rhodanese domain protein K07146 K07146; UPF0176 protein
D YPK_1719 protein of unknown function DUF489 K07153 hflD; high frequency lysogenization protein
D YPK_2548 ferric iron reductase K13255 fhuF; ferric iron reductase protein FhuF
D YPK_1494 LemA family protein K03744 lemA; LemA protein
D YPK_0269 SlyX family protein K03745 slyX; SlyX protein
D YPK_0318 protein of unknown function DUF494 K03747 smg; Smg protein
D YPK_3607 CreA family protein K05805 creA; CreA protein
D YPK_0842 protein of unknown function DUF335 SprT K02742 sprT; SprT protein
D YPK_1533 Phosphogluconate dehydratase K03749 dedD; DedD protein
D YPK_0227 Sporulation domain protein K03112 damX; DamX protein
D YPK_2563 protein of unknown function DUF218 K03748 sanA; SanA protein
D YPK_1530 SNARE associated Golgi protein K03975 dedA; membrane-associated protein
D YPK_1780 integral membrane protein, PqiA family K03808 pqiA; paraquat-inducible protein A
D YPK_2639 integral membrane protein, PqiA family K03808 pqiA; paraquat-inducible protein A
D YPK_1585 protein of unknown function DUF883 ElaB K05594 elaB; ElaB protein
D YPK_1899 conserved hypothetical protein K08990 ycjF; putative membrane protein
D YPK_3981 protein of unknown function DUF1145 K08993 yhhL; putative membrane protein
D YPK_2079 SEC-C motif domain protein K09858 K09858; SEC-C motif domain protein
D YPK_3216 putative lipoprotein K09914 K09914; putative lipoprotein
D YPK_0382 Maltose operon periplasmic K05775 malM; maltose operon periplasmic protein
D YPK_0375 phosphate-starvation-inducible E K13256 psiE; protein PsiE
D YPK_1492 alkylphosphonate utilization operon protein PhnA K06193 phnA; protein PhnA
C 99997 Function unknown
D YPK_0741 ShET2 enterotoxin domain protein K06867 K06867; uncharacterized protein
D YPK_1177 Ankyrin K06867 K06867; uncharacterized protein
D YPK_3408 ShET2 enterotoxin domain protein K06867 K06867; uncharacterized protein
D YPK_2577 Radical SAM domain protein K06871 K06871; uncharacterized protein
D YPK_0985 Radical SAM domain protein K06871 K06871; uncharacterized protein
D YPK_1379 Radical SAM domain protein K06871 K06871; uncharacterized protein
D YPK_3060 type VI secretion system effector, Hcp1 family K06887 K06887; uncharacterized protein
D YPK_1459 type VI secretion system effector, Hcp1 family K06887 K06887; uncharacterized protein
D YPK_1304 type VI secretion system effector, Hcp1 family K06887 K06887; uncharacterized protein
D YPK_0251 type VI secretion system effector, Hcp1 family K06887 K06887; uncharacterized protein
D YPK_0610 HNH endonuclease K06887 K06887; uncharacterized protein
D YPK_2800 conserved hypothetical protein K06887 K06887; uncharacterized protein
D YPK_3786 phospholipase/Carboxylesterase K06889 K06889; uncharacterized protein
D YPK_2191 hydrolases of the alpha/beta superfamily K06889 K06889; uncharacterized protein
D YPK_2918 protein of unknown function UPF0005 K06890 K06890; uncharacterized protein
D YPK_2297 GPW/gp25 family protein K06903 W; Bacteriophage baseplate protein W
D YPK_2342 GPW/gp25 family protein K06903 W; Bacteriophage baseplate protein W
D YPK_2305 late control D family protein K06905 D; Bacteriophage probable baseplate hub protein
D YPK_2352 late control D family protein K06905 D; Bacteriophage probable baseplate hub protein
D YPK_2304 P2 GpU family protein K06906 gpU; phage tail protein
D YPK_2351 P2 GpU family protein K06906 gpU; phage tail protein
D YPK_2347 tail sheath protein K06907 FI; Bacteriophage tail sheath protein
D YPK_2300 tail sheath protein K06907 FI; Bacteriophage tail sheath protein
D YPK_2301 phage major tail tube protein K06908 FII; Bacteriophage tail tube protein
D YPK_2348 phage major tail tube protein K06908 FII; Bacteriophage tail tube protein
D YPK_1898 protein of unknown function DUF463 YcjX family protein K06918 K06918; uncharacterized protein
D YPK_2622 CoA-binding domain protein K06929 K06929; uncharacterized protein
D YPK_1874 protein of unknown function DUF1289 K06938 K06938; uncharacterized protein
D YPK_2775 protein of unknown function UPF0153 K06940 K06940; uncharacterized protein
D YPK_3137 GTP-binding protein HSR1-related K06946 K06946; uncharacterized protein
D YPK_1795 sodium:dicarboxylate symporter K06956 K06956; uncharacterized protein
D YPK_1701 protein of unknown function UPF0227 K07000 K07000; uncharacterized protein
D YPK_0658 protein of unknown function UPF0227 K07000 K07000; uncharacterized protein
D YPK_2798 sulfatase K07014 K07014; uncharacterized protein
D YPK_0256 alpha/beta hydrolase fold K07019 K07019; uncharacterized protein
D YPK_3595 GPR1/FUN34/yaaH family protein K07034 K07034; uncharacterized protein
D YPK_1366 protein of unknown function zinc metallopeptidase putative K07054 K07054; uncharacterized protein
D YPK_0267 conserved hypothetical protein K07070 K07070; uncharacterized protein
D YPK_1542 domain of unknown function DUF1731 K07071 K07071; uncharacterized protein
D YPK_1516 protein of unknown function DUF81 K07090 K07090; uncharacterized protein
D YPK_1544 phosphodiesterase, MJ0936 family K07095 K07095; uncharacterized protein
D YPK_3774 conserved hypothetical protein K07109 K07109; uncharacterized protein
D YPK_3898 protein of unknown function DUF395 YeeE/YedE K07112 K07112; uncharacterized protein
D YPK_0539 LppC family lipoprotein K07121 K07121; uncharacterized protein
D YPK_2207 Sel1 domain protein repeat-containing protein K07126 K07126; uncharacterized protein
D YPK_2150 conserved hypothetical protein K07136 K07136; uncharacterized protein
D YPK_0531 conserved hypothetical radical SAM protein K07139 K07139; uncharacterized protein
D YPK_2642 MOSC domain protein beta barrel domain protein K07140 K07140; MOSC domain-containing protein
D YPK_2567 protein of unknown function DUF418 K07148 K07148; uncharacterized protein
D YPK_4247 protein of unknown function DUF37 K08998 K08998; uncharacterized protein
D YPK_0828 protein of unknown function DUF167 K09131 K09131; uncharacterized protein
D YPK_3025 protein of unknown function DUF493 K09158 K09158; uncharacterized protein
D YPK_2117 protein of unknown function UPF0153 K09160 K09160; uncharacterized protein
D YPK_1553 YfbU family protein K09161 K09161; uncharacterized protein
D YPK_1392 protein of unknown function DUF188 K09768 K09768; uncharacterized protein
D YPK_2057 YCII-related K09780 K09780; uncharacterized protein
D YPK_2102 protein of unknown function DUF444 K09786 K09786; uncharacterized protein
D YPK_2661 protein of unknown function DUF343 K09791 K09791; uncharacterized protein
D YPK_4143 protein of unknown function DUF610 YibQ K09798 K09798; uncharacterized protein
D YPK_2978 protein of unknown function UPF0125 K09801 K09801; uncharacterized protein
D YPK_2514 protein of unknown function DUF496 K09802 K09802; uncharacterized protein
D YPK_2295 protein of unknown function DUF497 K09803 K09803; uncharacterized protein
D YPK_0856 protein of unknown function DUF541 K09807 K09807; uncharacterized protein
D YPK_2697 protein of unknown function DUF535 K09824 virK; uncharacterized protein
D YPK_3298 protein of unknown function DUF539 K05952 K05952; uncharacterized protein
D YPK_2637 protein of unknown function DUF330 K09857 K09857; uncharacterized protein
D YPK_3600 protein of unknown function DUF328 K09861 K09861; uncharacterized protein
D YPK_3505 protein of unknown function DUF329 K09862 K09862; uncharacterized protein
D YPK_0353 protein of unknown function DUF416 K09891 K09891; uncharacterized protein
D YPK_4193 protein of unknown function DUF414 K09894 K09894; uncharacterized protein
D YPK_0862 yecA family protein K09895 K09895; uncharacterized protein
D YPK_4198 protein of unknown function DUF1040 K09896 K09896; uncharacterized protein
D YPK_4063 protein of unknown function DUF413 K09897 K09897; uncharacterized protein
D YPK_0255 protein of unknown function UPF0270 K09898 K09898; uncharacterized protein
D YPK_1552 protein of unknown function DUF412 K09899 K09899; uncharacterized protein
D YPK_2064 protein of unknown function DUF440 K09901 K09901; uncharacterized protein
D YPK_2120 protein of unknown function DUF709 K09902 K09902; uncharacterized protein
D YPK_2797 protein of unknown function DUF1414 K09904 K09904; uncharacterized protein
D YPK_2154 protein of unknown function DUF991 K09907 K09907; uncharacterized protein
D YPK_0521 protein of unknown function DUF1043 K09908 K09908; uncharacterized protein
D YPK_2623 conserved hypothetical protein K09909 K09909; uncharacterized protein
D YPK_3486 conserved hypothetical protein K09910 K09910; uncharacterized protein
D YPK_2632 protein of unknown function DUF1047 K09911 K09911; uncharacterized protein
D YPK_2500 conserved hypothetical protein K09912 K09912; uncharacterized protein
D YPK_2094 protein of unknown function DUF1315 K09916 K09916; uncharacterized protein
D YPK_2448 protein of unknown function UPF0181 K09917 K09917; uncharacterized protein
D YPK_2445 YebG family protein K09918 K09918; uncharacterized protein
D YPK_0656 protein of unknown function DUF1249 K09920 K09920; uncharacterized protein
D YPK_4010 protein of unknown function DUF484 K09921 K09921; uncharacterized protein
D YPK_0822 protein of unknown function DUF469 K09923 K09923; uncharacterized protein
D YPK_3794 conserved hypothetical protein K09937 K09937; uncharacterized protein
D YPK_1326 protein of unknown function DUF1508 K09946 K09946; uncharacterized protein
D YPK_1433 conserved hypothetical protein K09954 K09954; uncharacterized protein
D YPK_2837 protein of unknown function DUF1348 K09958 K09958; uncharacterized protein
D YPK_1225 conserved hypothetical protein K09960 K09960; uncharacterized protein
D YPK_1223 conserved hypothetical protein K09961 K09961; uncharacterized protein
D YPK_1435 protein of unknown function DUF925 K09962 K09962; uncharacterized protein
D YPK_3166 GumN family protein K09973 K09973; uncharacterized protein
D YPK_2219 protein of unknown function DUF886 K09975 K09975; uncharacterized protein
D YPK_1921 conserved hypothetical protein K09978 K09978; uncharacterized protein
D YPK_3704 conserved hypothetical protein K09979 K09979; uncharacterized protein
D YPK_2058 conserved hypothetical protein K09981 K09981; uncharacterized protein
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: May 11, 2024