| T00015 | mtu | Mycobacterium tuberculosis H37Rv |
| T02178 | mtv | Mycobacterium tuberculosis H37Rv |
| T00053 | mtc | Mycobacterium tuberculosis CDC1551 |
| T00540 | mra | Mycobacterium tuberculosis H37Ra |
| T00545 | mtf | Mycobacterium tuberculosis F11 |
| T00940 | mtb | Mycobacterium tuberculosis KZN 1435 |
| T01690 | mtk | Mycobacterium tuberculosis KZN 4207 |
| T02141 | mtz | Mycobacterium tuberculosis KZN 605 |
| T01775 | mtg | Mycobacterium tuberculosis RGTB327 |
| T01994 | mti | Mycobacterium tuberculosis RGTB423 |
| T01991 | mte | Mycobacterium tuberculosis CCDC5079 |
| T02679 | mtur | Mycobacterium tuberculosis CCDC5079 |
| T01992 | mtl | Mycobacterium tuberculosis CCDC5180 |
| T01993 | mto | Mycobacterium tuberculosis CTRI-2 |
| T02142 | mtd | Mycobacterium tuberculosis UT205 |
| T02526 | mtn | Mycobacterium tuberculosis Erdman = ATCC 35801 |
| T02616 | mtj | Mycobacterium tuberculosis Beijing/NITR203 |
| T02617 | mtub | Mycobacterium tuberculosis 7199-99 |
| T02652 | mtuc | Mycobacterium tuberculosis CAS/NITR204 |
| T02653 | mtue | Mycobacterium tuberculosis EAI5/NITR206 |
| T02749 | mtx | Mycobacterium tuberculosis EAI5 |
| T02654 | mtuh | Mycobacterium tuberculosis Haarlem/NITR202 |
| T02845 | mtul | Mycobacterium tuberculosis Haarlem |
| T03152 | mtut | Mycobacterium tuberculosis BT1 |
| T03153 | mtuu | Mycobacterium tuberculosis BT2 |
| T03154 | mtq | Mycobacterium tuberculosis HKBS1 |
| T00132 | mbo | Mycobacterium tuberculosis variant bovis AF2122/97 |
| T00463 | mbb | Mycobacterium tuberculosis variant bovis BCG Pasteur 1173P2 |
| T00864 | mbt | Mycobacterium tuberculosis variant bovis BCG Tokyo 172 |
| T01727 | mbm | Mycobacterium tuberculosis variant bovis BCG Mexico |
| T02451 | mbk | Mycobacterium tuberculosis variant bovis BCG Korea 1168P |
| T03796 | mbx | Mycobacterium tuberculosis variant bovis BCG ATCC 35743 |
| T01575 | maf | Mycobacterium tuberculosis variant africanum |
| T04291 | mmic | Mycobacterium tuberculosis variant microti |
| T01585 | mce | Mycobacterium canettii CIPT 140010059 |
| T02419 | mcq | Mycobacterium canettii CIPT 140060008 |
| T02420 | mcv | Mycobacterium canettii CIPT 140070008 |
| T02421 | mcx | Mycobacterium canettii CIPT 140070010 |
| T02422 | mcz | Mycobacterium canettii CIPT 140070017 |
| T09544 | mory | Mycobacterium orygis |
| T00047 | mle | Mycobacterium leprae TN |
| T00842 | mlb | Mycobacterium leprae Br4923 |
| T00156 | mpa | Mycobacterium avium subsp. paratuberculosis K-10 |
| T02662 | mao | Mycobacterium avium subsp. paratuberculosis MAP4 |
| T03787 | mavi | Mycobacterium avium subsp. paratuberculosis E1 |
| T03847 | mavu | Mycobacterium avium subsp. paratuberculosis E93 |
| T00433 | mav | Mycobacterium avium 104 |
| T01754 | mit | Mycobacterium intracellulare MOTT-02 |
| T02158 | mia | Mycobacterium intracellulare ATCC 13950 |
| T02325 | mid | Mycobacterium intracellulare subsp. intracellulare |
| T02732 | myo | Mycobacterium intracellulare subsp. yongonense |
| T04926 | mchi | Mycobacterium intracellulare subsp. chimaera |
| T01755 | mir | Mycobacterium paraintracellulare |
| T05049 | mmal | Mycobacterium marseillense |
| T05534 | mlp | Mycobacterium lepraemurium |
| T07431 | mman | Mycobacterium mantenii |
| T02423 | msa | Mycobacterium sp. JS623 |
| T00435 | mul | Mycobacterium ulcerans |
| T00694 | mmi | Mycobacterium marinum M |
| T04774 | mmae | Mycobacterium marinum E11 |
| T02444 | mli | Mycobacterium liflandii |
| T07300 | mpse | Mycobacterium pseudoshottsii |
| T07303 | msho | Mycobacterium shottsii |
| T00367 | mmc | Mycobacterium sp. MCS |
| T00442 | mkm | Mycobacterium sp. KMS |
| T00482 | mjl | Mycobacterium sp. JLS |
| T02113 | mmm | Mycobacterium sp. MOTT36Y |
| T02887 | mkn | Mycobacterium kansasii ATCC 12478 |
| T03634 | myv | Mycobacterium sp. VKM Ac-1817D |
| T03960 | mye | Mycobacterium sp. EPa45 |
| T04111 | mhad | Mycobacterium haemophilum |
| T05102 | mdx | Mycobacterium dioxanotrophicus |
| T05717 | mshg | Mycobacterium shigaense |
| T06524 | mfj | Mycobacterium florentinum |
| T07145 | msto | Mycobacterium stomatepiae |
| T07396 | msim | Mycobacterium simiae |
| T07413 | msak | Mycobacterium saskatchewanense |
| T07774 | mku | Mycobacterium kubicae |
| T08800 | mlw | Mycobacterium lentiflavum |
| T06649 | mxe | Mycobacterium xenopi |
| T06809 | mnv | Mycobacterium noviomagense |
| T06847 | mpag | Mycobacterium paragordonae |
| T06926 | mnm | Mycobacterium novum |
| T06936 | mgor | Mycobacterium gordonae |
| T07035 | mcoo | Mycobacterium cookii |
| T07125 | mbai | Mycobacterium basiliense |
| T07134 | mseo | Mycobacterium seoulense |
| T07325 | mhek | Mycobacterium heckeshornense |
| T07342 | mgau | Mycobacterium gallinarum |
| T07377 | mlj | Mycobacterium lacus |
| T07397 | mbrd | Mycobacterium branderi |
| T07415 | mshj | Mycobacterium shinjukuense |
| T07571 | mmam | Mycobacterium malmoense |
| T07689 | mspg | Mycobacterium spongiae |
| T07946 | mot | Mycobacterium ostraviense |
| T08064 | mlm | Mycobacterium lepromatosis |
| T08203 | mpaa | Mycobacterium paraterrae |
| T08748 | mmeh | Candidatus Mycobacterium methanotrophicum |
| T09155 | mky | Mycobacterium kiyosense |
| T09402 | madi | Mycobacterium adipatum |
| T09639 | mwu | Candidatus Mycobacterium wuenschmannii |
Genus: Mycobacterium